BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019645
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TPA|A Chain A, Structure Of Hbpa2 From Haemophilus Parasuis
          Length = 521

 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 233 ISLPSNALSFALKRQFSPSDKLSYWYNFDSNYWSAVYKHTYGKDFKFKAGYDSEVRLGWA 292
           IS P+N L   +    +   KLS     D+N ++A  +  Y +  +FKAG   EV  G A
Sbjct: 3   ISAPTNTLVNCIA---TAPMKLSPAITNDANDFNASSQQVYNRLVEFKAG-KIEVEPGLA 58

Query: 293 SLWVGDEGGKARTAPMKMKVQF 314
             W   E G   T  ++  V+F
Sbjct: 59  ERWEISEDGLVYTFYLRQNVKF 80


>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
           R209h Mutant
 pdb|3NQ5|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
           R209h Mutant
          Length = 303

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 108 YDLEEQNAFVK--SSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSS 159
           +D+  QN+F      F  GP+LH R  H V  Q G V    N  DP + L  ++
Sbjct: 182 WDMTSQNSFRNQLEGFINGPQLHNRVHHWVGGQMGVVPTAPN--DPVFFLHHAN 233


>pdb|3BTP|A Chain A, Crystal Structure Of Agrobacterium Tumefaciens Vire2 In
           Complex With Its Chaperone Vire1: A Novel Fold And
           Implications For Dna Binding
          Length = 556

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 206 ICTAQYEEEDLKLRYCYKDEALSFIPTISLPSNALSFALKRQFSPSDKLSYWYNFDSNYW 265
           I T +Y   +++ RY ++ +A S +P I + +            P + + + Y F  + +
Sbjct: 236 IQTEKYGRREIQKRYEHQFQAGSLLPDILIKT------------PQNDIHFSYRFAGDAY 283

Query: 266 SAVYKHTYGKDFKFKAGYDSEVRL 289
           +      + +  K K G D+E++L
Sbjct: 284 ANKRFEEFERAIKTKYGSDTEIKL 307


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,214,648
Number of Sequences: 62578
Number of extensions: 354824
Number of successful extensions: 829
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)