Query 019645
Match_columns 338
No_of_seqs 50 out of 52
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 03:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA01732 proline-rich protein 96.0 0.0082 1.8E-07 50.1 3.9 20 74-93 61-80 (94)
2 KOG1924 RhoA GTPase effector D 95.2 0.029 6.2E-07 61.3 5.3 11 53-63 615-625 (1102)
3 PF01690 PLRV_ORF5: Potato lea 92.6 0.089 1.9E-06 54.1 2.9 14 168-181 91-104 (465)
4 PRK09752 adhesin; Provisional 90.8 0.22 4.7E-06 56.3 3.7 17 245-261 1172-1188(1250)
5 PF05308 Mito_fiss_reg: Mitoch 87.0 0.73 1.6E-05 43.9 3.9 10 73-82 243-252 (253)
6 PRK09752 adhesin; Provisional 85.9 0.78 1.7E-05 52.1 3.9 14 203-216 1081-1094(1250)
7 KOG1830 Wiskott Aldrich syndro 83.9 1.1 2.5E-05 46.4 3.8 10 17-26 385-394 (518)
8 PF01690 PLRV_ORF5: Potato lea 80.9 1.1 2.4E-05 46.4 2.5 20 22-41 7-27 (465)
9 KOG3671 Actin regulatory prote 79.2 2.5 5.4E-05 44.7 4.3 7 80-86 481-487 (569)
10 KOG2675 Adenylate cyclase-asso 78.7 1.4 3.1E-05 45.7 2.4 54 93-147 323-377 (480)
11 KOG1923 Rac1 GTPase effector F 77.0 3.4 7.3E-05 45.5 4.7 12 227-238 501-512 (830)
12 PRK15319 AIDA autotransporter- 76.9 3.2 7E-05 49.3 4.7 24 86-109 1750-1774(2039)
13 PHA03211 serine/threonine kina 76.2 2.9 6.3E-05 41.7 3.8 16 7-22 25-43 (461)
14 KOG2675 Adenylate cyclase-asso 74.7 1.7 3.7E-05 45.1 1.8 7 167-173 353-359 (480)
15 COG5178 PRP8 U5 snRNP spliceos 73.8 2.7 5.8E-05 48.7 3.0 25 48-72 40-64 (2365)
16 PHA03247 large tegument protei 72.8 8.4 0.00018 47.5 6.8 24 92-115 2999-3022(3151)
17 PRK15240 resistance to complem 67.8 7.9 0.00017 34.9 4.2 40 190-235 27-67 (185)
18 COG5178 PRP8 U5 snRNP spliceos 67.4 4.4 9.5E-05 47.0 3.0 32 137-171 134-165 (2365)
19 PRK12700 flgH flagellar basal 65.1 83 0.0018 29.9 10.5 54 168-221 149-206 (230)
20 PHA03211 serine/threonine kina 61.9 6.7 0.00014 39.2 2.8 9 141-149 210-218 (461)
21 PHA03247 large tegument protei 57.8 18 0.00039 44.9 5.7 13 74-86 2964-2976(3151)
22 COG2067 FadL Long-chain fatty 57.5 9.5 0.00021 39.1 3.1 171 158-337 99-301 (440)
23 PHA03417 E4 protein; Provision 56.3 11 0.00024 32.9 2.9 10 54-63 61-70 (118)
24 PF02711 Pap_E4: E4 protein; 55.5 16 0.00034 30.7 3.5 12 53-64 41-52 (95)
25 KOG1945 Protein phosphatase 1 55.2 9.5 0.00021 38.9 2.6 17 102-118 119-135 (377)
26 smart00021 DAX Domain present 53.7 13 0.00028 30.8 2.7 62 215-279 3-68 (83)
27 PRK14849 putative lipoprotein/ 52.9 10 0.00022 45.1 2.7 6 86-91 1504-1509(1806)
28 cd08677 C2A_Synaptotagmin-13 C 52.6 13 0.00028 31.7 2.6 51 123-173 32-82 (118)
29 PRK15319 AIDA autotransporter- 52.1 20 0.00044 43.1 4.9 13 248-260 1964-1976(2039)
30 PF06316 Ail_Lom: Enterobacter 50.9 15 0.00033 34.5 3.1 25 214-238 49-74 (199)
31 KOG3644 Ligand-gated ion chann 49.0 45 0.00097 34.5 6.3 122 168-304 148-283 (457)
32 cd07305 Porin3_Tom40 Transloca 46.8 2.5E+02 0.0054 26.3 10.6 48 103-151 56-103 (279)
33 PF01698 FLO_LFY: Floricaula / 46.5 6.6 0.00014 40.1 0.0 37 96-132 70-112 (386)
34 KOG1785 Tyrosine kinase negati 44.5 25 0.00054 37.0 3.7 11 5-15 471-481 (563)
35 PF00778 DIX: DIX domain; Int 43.0 27 0.00058 28.6 3.0 45 215-262 3-49 (84)
36 PRK15313 autotransport protein 39.1 34 0.00073 38.8 3.9 61 246-307 878-944 (955)
37 KOG4462 WASP-interacting prote 37.7 50 0.0011 34.2 4.6 23 54-76 385-407 (437)
38 PF14173 ComGG: ComG operon pr 35.7 45 0.00099 26.8 3.3 38 162-199 35-72 (95)
39 PRK12407 flgH flagellar basal 34.5 4.1E+02 0.0089 25.2 11.0 54 168-221 139-196 (221)
40 KOG0559 Dihydrolipoamide succi 34.1 64 0.0014 33.7 4.7 9 60-68 227-235 (457)
41 KOG1925 Rac1 GTPase effector F 32.3 44 0.00095 36.3 3.3 23 99-121 309-331 (817)
42 KOG4849 mRNA cleavage factor I 30.8 62 0.0013 33.7 4.0 23 32-54 275-297 (498)
43 KOG1925 Rac1 GTPase effector F 30.6 42 0.0009 36.5 2.8 13 99-111 318-330 (817)
44 PF06788 UPF0257: Uncharacteri 30.0 5.2E+02 0.011 25.0 10.1 149 92-287 25-175 (236)
45 PLN03132 NADH dehydrogenase (u 29.7 26 0.00055 36.5 1.1 13 188-200 270-282 (461)
46 PF13418 Kelch_4: Galactose ox 29.5 36 0.00078 23.1 1.5 18 250-268 27-44 (49)
47 PF02806 Alpha-amylase_C: Alph 29.3 2.6E+02 0.0057 21.4 6.8 80 242-333 12-94 (95)
48 PF13793 Pribosyltran_N: N-ter 28.7 23 0.00051 29.7 0.6 47 152-198 11-57 (116)
49 TIGR03509 OMP_MtrB_PioB decahe 26.3 1.3E+02 0.0028 31.8 5.5 51 239-289 353-416 (649)
50 KOG1785 Tyrosine kinase negati 26.3 1.3E+02 0.0029 31.9 5.5 16 40-55 543-558 (563)
51 cd07694 Ig2_CD4 Second immunog 25.6 1.6E+02 0.0036 24.5 4.9 64 154-220 16-81 (88)
52 PF13964 Kelch_6: Kelch motif 25.4 43 0.00094 23.0 1.3 14 255-268 30-43 (50)
53 PRK15313 autotransport protein 24.5 86 0.0019 35.7 4.0 55 98-155 678-738 (955)
54 PRK12697 flgH flagellar basal 24.4 6.3E+02 0.014 24.2 10.5 37 168-204 145-184 (226)
55 PLN03132 NADH dehydrogenase (u 24.4 47 0.001 34.6 1.9 12 288-299 346-357 (461)
56 PF14754 IFR3_antag: Papain-li 23.6 64 0.0014 30.5 2.5 38 286-323 187-229 (249)
57 PRK14849 putative lipoprotein/ 21.7 64 0.0014 38.9 2.5 7 142-148 1571-1577(1806)
58 KOG4462 WASP-interacting prote 21.4 84 0.0018 32.7 3.0 21 68-89 33-53 (437)
59 PF07661 MORN_2: MORN repeat v 21.1 1.5E+02 0.0031 17.2 2.9 22 203-224 1-22 (22)
60 PF01459 Porin_3: Eukaryotic p 21.0 6E+02 0.013 22.6 12.1 156 124-281 87-259 (273)
61 PRK10781 rcsF outer membrane l 20.6 1.1E+02 0.0024 27.3 3.2 26 111-136 87-112 (133)
62 PF09092 Lyase_N: Lyase, N ter 20.6 2.1E+02 0.0046 26.4 5.1 60 240-326 89-153 (178)
63 PRK09980 ompL outer membrane p 20.5 2.4E+02 0.0052 26.9 5.6 44 212-261 70-115 (230)
64 TIGR03593 yidC_nterm membrane 20.3 7.8E+02 0.017 23.7 9.6 68 114-181 80-157 (366)
65 KOG0162 Myosin class I heavy c 20.1 1.3E+02 0.0028 34.2 4.2 6 85-90 1080-1085(1106)
No 1
>PHA01732 proline-rich protein
Probab=96.01 E-value=0.0082 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.3
Q ss_pred ccccceeeeeeecCCCCCCC
Q 019645 74 FDSLAKLKVSFQNDNKGQIF 93 (338)
Q Consensus 74 L~GlAKLrLAfq~D~SG~~~ 93 (338)
-.|.|.||.--|+..+|+++
T Consensus 61 a~gTasLrIpkqtg~~g~~s 80 (94)
T PHA01732 61 AGGTASLRIPKQSGTQGSIS 80 (94)
T ss_pred ccCcceeEeecccccccccc
Confidence 36778888888888877655
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.18 E-value=0.029 Score=61.26 Aligned_cols=11 Identities=0% Similarity=0.223 Sum_probs=5.4
Q ss_pred cccccccCCcc
Q 019645 53 RVTSEFDSDSS 63 (338)
Q Consensus 53 rvtsEfDSe~s 63 (338)
+=.-+|+-|..
T Consensus 615 kpKK~~k~e~~ 625 (1102)
T KOG1924|consen 615 KPKKVYKPEVP 625 (1102)
T ss_pred CccccCCCCCc
Confidence 33445555543
No 3
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=92.56 E-value=0.089 Score=54.13 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=7.9
Q ss_pred cEEEEecCcceeee
Q 019645 168 KATFKFPLGEVSLV 181 (338)
Q Consensus 168 Rat~~FP~Gevs~e 181 (338)
-..|--|.|+-||+
T Consensus 91 ~f~~Pvp~G~~sV~ 104 (465)
T PF01690_consen 91 MFVFPVPKGKWSVE 104 (465)
T ss_pred EEEEecCCceEEEE
Confidence 34444456766666
No 4
>PRK09752 adhesin; Provisional
Probab=90.77 E-value=0.22 Score=56.30 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=10.7
Q ss_pred ccccCCCCCceeEEecc
Q 019645 245 KRQFSPSDKLSYWYNFD 261 (338)
Q Consensus 245 KR~f~psdKlSY~ynfd 261 (338)
.|+|-|-=++.|||+|.
T Consensus 1172 ~~~~QPYleaNW~Hn~~ 1188 (1250)
T PRK09752 1172 AVHVIPTLDLNYYHDPH 1188 (1250)
T ss_pred CceEeEEEEEEEEEcCC
Confidence 45666666666666654
No 5
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=87.04 E-value=0.73 Score=43.88 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.2
Q ss_pred cccccceeee
Q 019645 73 LFDSLAKLKV 82 (338)
Q Consensus 73 vL~GlAKLrL 82 (338)
+|.++=++||
T Consensus 243 VLKDmnkVKL 252 (253)
T PF05308_consen 243 VLKDMNKVKL 252 (253)
T ss_pred HHHhhhhccc
Confidence 3444444443
No 6
>PRK09752 adhesin; Provisional
Probab=85.88 E-value=0.78 Score=52.11 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=5.8
Q ss_pred cCceEEEEeecccc
Q 019645 203 LNGICTAQYEEEDL 216 (338)
Q Consensus 203 lnG~~tA~y~d~~~ 216 (338)
++++.-..+-+|++
T Consensus 1081 VD~wlQY~WFdN~V 1094 (1250)
T PRK09752 1081 LDSWLQYAWFNNDV 1094 (1250)
T ss_pred EEEEEEeeEecccc
Confidence 44444444444443
No 7
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=83.89 E-value=1.1 Score=46.44 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=6.6
Q ss_pred cCCCCCCCCC
Q 019645 17 MVPPPLDPQP 26 (338)
Q Consensus 17 ~~~pp~~p~p 26 (338)
|+|||++.|-
T Consensus 385 ~~~pphp~p~ 394 (518)
T KOG1830|consen 385 FLCPPHPLPQ 394 (518)
T ss_pred cCCCCCCCCc
Confidence 7777766553
No 8
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=80.90 E-value=1.1 Score=46.38 Aligned_cols=20 Identities=40% Similarity=0.911 Sum_probs=8.2
Q ss_pred CCCCCCC-CCCCCCCCCCCCC
Q 019645 22 LDPQPQP-SPSPPQPQQQRTS 41 (338)
Q Consensus 22 ~~p~p~p-ppppppppp~~~~ 41 (338)
|.|.|.| |||||+|+|+|++
T Consensus 7 P~P~P~P~P~P~P~P~PePtP 27 (465)
T PF01690_consen 7 PSPGPSPTPPPPPAPTPEPTP 27 (465)
T ss_pred CCCCCCCCCCCCCcccCCCcc
Confidence 3333333 3333444444444
No 9
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=79.18 E-value=2.5 Score=44.68 Aligned_cols=7 Identities=29% Similarity=0.055 Sum_probs=2.7
Q ss_pred eeeeeec
Q 019645 80 LKVSFQN 86 (338)
Q Consensus 80 LrLAfq~ 86 (338)
|+.+-++
T Consensus 481 l~~ve~t 487 (569)
T KOG3671|consen 481 LKKVETT 487 (569)
T ss_pred ccceeec
Confidence 3333333
No 10
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=78.72 E-value=1.4 Score=45.67 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCCceeeeeccccceechhhhhhhhhcccccCcccee-eeecccccccceeeEEEe
Q 019645 93 FEPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHF-RAAHDVKAQQGEVGVVAN 147 (338)
Q Consensus 93 ~~P~~~~vsK~fSv~yD~e~rNALvrg~adl~~~l~l-k~~hDvKaqQGEV~vvA~ 147 (338)
..|.+-|..|...|-|....+|. |=-.+|+..++.+ +-...+---+|-|+-++-
T Consensus 323 ~pp~~ELeGkkW~VEnq~~~~~~-Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItl 377 (480)
T KOG2675|consen 323 KPPVKELEGKKWRVENQENNKNL-VIDDAELKQSVYIYKCSNSTIQIKGKVNSITL 377 (480)
T ss_pred CCCceeeccceEEEeeecCCcce-eeeeccccceEEEEeccceEEEEeceeeeEEe
Confidence 35778888999999888755554 4456677665554 223333333566665544
No 11
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.97 E-value=3.4 Score=45.46 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=6.9
Q ss_pred eeeeeeccCCCc
Q 019645 227 LSFIPTISLPSN 238 (338)
Q Consensus 227 ls~iPsiSlPsn 238 (338)
.+=++.+|.|++
T Consensus 501 ~~pme~Ls~edk 512 (830)
T KOG1923|consen 501 RSPMENLSEEDK 512 (830)
T ss_pred cCchhhcccchh
Confidence 445555666665
No 12
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=76.87 E-value=3.2 Score=49.31 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=11.4
Q ss_pred cCCCCCC-CCCceeeeeccccceec
Q 019645 86 NDNKGQI-FEPQLAFTSKHLSLHYD 109 (338)
Q Consensus 86 ~D~SG~~-~~P~~~~vsK~fSv~yD 109 (338)
+|+.|+. ....=+++.|.+--+.+
T Consensus 1750 HDR~Geqy~~ad~s~W~Ri~GGh~~ 1774 (2039)
T PRK15319 1750 YDREGSQYRNADGSVWARFKAGKAE 1774 (2039)
T ss_pred HHcCCcccccCCCCeEEEEeccccc
Confidence 5666641 11222566666544443
No 13
>PHA03211 serine/threonine kinase US3; Provisional
Probab=76.24 E-value=2.9 Score=41.67 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.9
Q ss_pred CCCcccccc---ccCCCCC
Q 019645 7 PSPSLQIPN---HMVPPPL 22 (338)
Q Consensus 7 ~~~~l~~p~---~~~~pp~ 22 (338)
|.-.-+|+| ||-+|+-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (461)
T PHA03211 25 PETTTRCVFPPETFYNPPR 43 (461)
T ss_pred CCCCCCCCCCCCCCCCCcc
Confidence 344456665 4444443
No 14
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=74.72 E-value=1.7 Score=45.08 Aligned_cols=7 Identities=0% Similarity=0.482 Sum_probs=2.6
Q ss_pred CcEEEEe
Q 019645 167 PKATFKF 173 (338)
Q Consensus 167 PRat~~F 173 (338)
....+.|
T Consensus 353 kqsvyIy 359 (480)
T KOG2675|consen 353 KQSVYIY 359 (480)
T ss_pred cceEEEE
Confidence 3333333
No 15
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=73.78 E-value=2.7 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=17.7
Q ss_pred CCCCccccccccCCcceeeeccccc
Q 019645 48 SRPALRVTSEFDSDSSIFLHKISCK 72 (338)
Q Consensus 48 rrp~~rvtsEfDSe~sIF~NkVSA~ 72 (338)
+.+++-=.-+-||...+|.-++|-+
T Consensus 40 k~~~~~g~~~~~~g~~~~~~r~S~k 64 (2365)
T COG5178 40 KQLSIVGDILGHSGNPIYSLRVSDK 64 (2365)
T ss_pred ccHHHhhhhhhhcCCcceeeecccc
Confidence 4444444567788888998888876
No 16
>PHA03247 large tegument protein UL36; Provisional
Probab=72.81 E-value=8.4 Score=47.50 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=16.5
Q ss_pred CCCCceeeeeccccceechhhhhh
Q 019645 92 IFEPQLAFTSKHLSLHYDLEEQNA 115 (338)
Q Consensus 92 ~~~P~~~~vsK~fSv~yD~e~rNA 115 (338)
+..+-+..++..+.+|.|.+-++.
T Consensus 2999 ~~~~~~~~w~~~~~~~~~~~~~~~ 3022 (3151)
T PHA03247 2999 HSLSRVSSWASSLALHEETDPPPV 3022 (3151)
T ss_pred CCCCCcchhhhhccccccCCCCCC
Confidence 444567777888888888776543
No 17
>PRK15240 resistance to complement killing; Provisional
Probab=67.78 E-value=7.9 Score=34.94 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=27.4
Q ss_pred ceeEEeccccccccCceEEEEeecccceeeeeee-cCceeeeeeccC
Q 019645 190 KTLSISGIAKGQILNGICTAQYEEEDLKLRYCYK-DEALSFIPTISL 235 (338)
Q Consensus 190 r~lsv~G~~k~~~lnG~~tA~y~d~~~~lrY~yK-D~els~iPsiSl 235 (338)
.++|+ |...+++- | .-+-+.+||||+|. |+.+.+|+|++.
T Consensus 27 ~t~s~-GYaq~~~~-~----~~~~~G~nlkYrYe~~~~~gvi~S~ty 67 (185)
T PRK15240 27 HSVSV-GYAQSRIE-H----FKDIRGVNLKYRYEAQTPLGLMASFSW 67 (185)
T ss_pred CEEEE-EEEEeecc-C----CCCCCceEEEEeecCCCceEEEEEEEE
Confidence 34444 55555552 1 12235589999999 899999999985
No 18
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=67.43 E-value=4.4 Score=47.04 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=17.0
Q ss_pred cccceeeEEEecCCCCceeeecCCCCCCCCCcEEE
Q 019645 137 AQQGEVGVVANLGDPGYALELSSPVPYVGYPKATF 171 (338)
Q Consensus 137 aqQGEV~vvA~LgDP~yk~ELSS~vP~~glPRat~ 171 (338)
++-.||+++-... =++-++-.+|-.+-|..+.
T Consensus 134 e~~~evkvlyh~~---Gaitfvne~prviep~~~a 165 (2365)
T COG5178 134 EDVSEVKVLYHCH---GAITFVNEVPRVIEPQLFA 165 (2365)
T ss_pred hhhheeeEEeecc---ceEEEeecCccccCcceee
Confidence 4555666655432 2445555666665555443
No 19
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=65.10 E-value=83 Score=29.91 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=33.4
Q ss_pred cEEEEecCcceeeeeeee---hhccceeEEeccccccccCceEE-EEeecccceeeee
Q 019645 168 KATFKFPLGEVSLVEREE---EEVKKTLSISGIAKGQILNGICT-AQYEEEDLKLRYC 221 (338)
Q Consensus 168 Rat~~FP~Gevs~ee~~~---ee~~r~lsv~G~~k~~~lnG~~t-A~y~d~~~~lrY~ 221 (338)
+++=..|||-+-++-+++ +.+++.|-|+|||.-+=.+.-=| ..-.=-|+.|.|.
T Consensus 149 ~V~~VlpNGNLvI~GeK~i~vN~~~e~irlsGiVRP~DI~~~NtV~S~~IAdArI~Y~ 206 (230)
T PRK12700 149 TVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYR 206 (230)
T ss_pred EEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCeEccceeeeEEEEEc
Confidence 355678999998875332 45688999999998765443222 2222234455554
No 20
>PHA03211 serine/threonine kinase US3; Provisional
Probab=61.93 E-value=6.7 Score=39.20 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=3.8
Q ss_pred eeeEEEecC
Q 019645 141 EVGVVANLG 149 (338)
Q Consensus 141 EV~vvA~Lg 149 (338)
|+.++++|.
T Consensus 210 E~~iL~~L~ 218 (461)
T PHA03211 210 EARLLRRLS 218 (461)
T ss_pred HHHHHHHCC
Confidence 444444443
No 21
>PHA03247 large tegument protein UL36; Provisional
Probab=57.75 E-value=18 Score=44.92 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.6
Q ss_pred ccccceeeeeeec
Q 019645 74 FDSLAKLKVSFQN 86 (338)
Q Consensus 74 L~GlAKLrLAfq~ 86 (338)
++.++.=++..++
T Consensus 2964 ~~~~~~~~~~~pR 2976 (3151)
T PHA03247 2964 LGALVPGRVAVPR 2976 (3151)
T ss_pred ccccCcccccCcc
Confidence 4444444444443
No 22
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=57.51 E-value=9.5 Score=39.15 Aligned_cols=171 Identities=19% Similarity=0.260 Sum_probs=95.2
Q ss_pred cCCCCCCCCCcEEEEecCcc-ee----e------eeeeehh-ccceeEEeccccccccCceEEEEeecc---cceeeeee
Q 019645 158 SSPVPYVGYPKATFKFPLGE-VS----L------VEREEEE-VKKTLSISGIAKGQILNGICTAQYEEE---DLKLRYCY 222 (338)
Q Consensus 158 SS~vP~~glPRat~~FP~Ge-vs----~------ee~~~ee-~~r~lsv~G~~k~~~lnG~~tA~y~d~---~~~lrY~y 222 (338)
....|.-=+|++-|++|+++ +. + +-+-+++ .-+...+.=-+++.=++..|.=..||+ -+-|+.-|
T Consensus 99 ~d~~~~~~vP~~~~~~pind~f~~G~~~~~p~G~~t~~~~~~~g~~~~~~t~l~s~~l~~s~sYrvN~~~S~G~gl~~~~ 178 (440)
T COG2067 99 GDITPTAWVPNFYFVAPINDQFAFGLSFYVPYGLATEYDDNWAGGSFGGDTKLQSINLNPSGSYRVNDGFSVGLGLIAVY 178 (440)
T ss_pred CCCcCcEEecccceEEEccCcEEEEEEeecccccccCCCCCcchhhhcccceEEEEeecceEEEEecCCcceeeeEEEEE
Confidence 44566667889999999988 22 1 1111111 112222222344444666665555555 23455555
Q ss_pred ecCceeeeeeccCCCccc---ccccc-----cccCCCCCceeEEec-------cCcceeeeeeeecCcceeEeeecCccc
Q 019645 223 KDEALSFIPTISLPSNAL---SFALK-----RQFSPSDKLSYWYNF-------DSNYWSAVYKHTYGKDFKFKAGYDSEV 287 (338)
Q Consensus 223 KD~els~iPsiSlPsnal---S~aFK-----R~f~psdKlSY~ynf-------dt~~WsavyK~~~~k~~K~KaGYdS~v 287 (338)
-+++++-..-.-.+.++- -+-+- --..-.|+.+|-||- |.+.|+++|+-++ +.++|.||++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~g~G~~lG~~ye~~d~~r~g~~YrS~V--~~~~~g~~~~~~ 256 (440)
T COG2067 179 ASAKLKRYAGNLGPLQAPNGMPSPLGNILSGLARLKGEDWGFGWNLGVAYEINDNNRIGLSYRSKV--KMDFKGGYESSL 256 (440)
T ss_pred ehhhhhccccccccccccccccCCCccccccccccccccccceeEEEEEEccCcceeEEEEEeeee--eEeccCCccccc
Confidence 556554333322222211 00000 113345666666654 5678999999887 677889999999
Q ss_pred ceeeeeeeeecCCC--CcccCCcceEEEEEeecCccccccceeEEEEeeccc
Q 019645 288 RLGWASLWVGDEGG--KARTAPMKMKVQFMLQVPQDDIKSSALMFRVKKRWD 337 (338)
Q Consensus 288 rlgWaS~WvG~e~g--~aK~aPmK~K~Q~mLqvPQd~~k~~~l~FrvKKRwd 337 (338)
-++|+-. .+++ -.+..| .+.++-|++||- -+-....+|..+|.
T Consensus 257 ~~~~~~~---~~~~~~~g~~~~--~~~~~~l~lP~~--~el~~~~~~~d~w~ 301 (440)
T COG2067 257 NLGMAGL---PIGPLALGGVTP--GSGKLTLSLPAS--AELSGQHKVADQWA 301 (440)
T ss_pred ccccccc---cccccccCceec--ccceEEEecCcE--EEEeeeeccCCCeE
Confidence 9999887 2222 112223 668888888873 34445556666664
No 23
>PHA03417 E4 protein; Provisional
Probab=56.31 E-value=11 Score=32.87 Aligned_cols=10 Identities=0% Similarity=0.139 Sum_probs=6.4
Q ss_pred ccccccCCcc
Q 019645 54 VTSEFDSDSS 63 (338)
Q Consensus 54 vtsEfDSe~s 63 (338)
.-|+.||...
T Consensus 61 l~sd~ds~~~ 70 (118)
T PHA03417 61 LGNDHEDLHN 70 (118)
T ss_pred ccCccccccc
Confidence 4678887533
No 24
>PF02711 Pap_E4: E4 protein; InterPro: IPR003861 This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but the function of neither E4 nor E1--E4 is known [].
Probab=55.50 E-value=16 Score=30.70 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=7.2
Q ss_pred cccccccCCcce
Q 019645 53 RVTSEFDSDSSI 64 (338)
Q Consensus 53 rvtsEfDSe~sI 64 (338)
|.-++-||+.+.
T Consensus 41 R~~sd~ds~~~~ 52 (95)
T PF02711_consen 41 RLPSDSDSSTSQ 52 (95)
T ss_pred CCCCccccCCcc
Confidence 455667766553
No 25
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=55.17 E-value=9.5 Score=38.88 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=8.2
Q ss_pred ccccceechhhhhhhhh
Q 019645 102 KHLSLHYDLEEQNAFVK 118 (338)
Q Consensus 102 K~fSv~yD~e~rNALvr 118 (338)
.+-+.--|.+++.+.+.
T Consensus 119 ~~~gkk~~~~e~~~~~~ 135 (377)
T KOG1945|consen 119 MGVGKKSGLEELGIFVK 135 (377)
T ss_pred cccchhccchhhcceee
Confidence 34444455555555443
No 26
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=53.73 E-value=13 Score=30.77 Aligned_cols=62 Identities=18% Similarity=0.411 Sum_probs=44.0
Q ss_pred cceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCCceeEEeccCcc--e-eeeeeeecCcceeE
Q 019645 215 DLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKLSYWYNFDSNY--W-SAVYKHTYGKDFKF 279 (338)
Q Consensus 215 ~~~lrY~yKD~els~iPsiSlPsnalS~a-FKR~f~psdKlSY~ynfdt~~--W-savyK~~~~k~~K~ 279 (338)
+.++-|..-||++-..-.|--|...+.|+ ||+.|+-. .|+|-|-+-. - ..|+--...++=++
T Consensus 3 ~TkV~Y~~d~e~~PY~~~i~~~~~~iTLgdFK~~l~k~---~yry~FK~~d~df~gvVkeEi~dD~~~L 68 (83)
T smart00021 3 ETKVIYHLDDEETPYLVKVPVPAERVTLGDFKEVLTKK---NYKYYFKSMDDDFGGVVKEEIRDDSARL 68 (83)
T ss_pred ceEEEEEeCCCCCceeEecCCCcCceEHHHHHHhhccC---CcEEEEEecCcccCCeeEEEEcCCcccc
Confidence 45678889899999999999999888885 99999876 5888885432 3 44444443333333
No 27
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=52.86 E-value=10 Score=45.14 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=3.4
Q ss_pred cCCCCC
Q 019645 86 NDNKGQ 91 (338)
Q Consensus 86 ~D~SG~ 91 (338)
+|+.|+
T Consensus 1504 hdR~GE 1509 (1806)
T PRK14849 1504 HDRLGE 1509 (1806)
T ss_pred HHhcCc
Confidence 466564
No 28
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=52.58 E-value=13 Score=31.74 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=39.8
Q ss_pred cCccceeeeecccccccceeeEEEecCCCCceeeecCCCCCCCCCcEEEEe
Q 019645 123 VGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFKF 173 (338)
Q Consensus 123 l~~~l~lk~~hDvKaqQGEV~vvA~LgDP~yk~ELSS~vP~~glPRat~~F 173 (338)
-.+.+.+.+..+-|...-+=++..+.-||-|--.+.-.||...+++.|+.|
T Consensus 32 sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~ 82 (118)
T cd08677 32 CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTL 82 (118)
T ss_pred CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEE
Confidence 367888888765553444667788889999998888889998898888876
No 29
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=52.12 E-value=20 Score=43.08 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=5.8
Q ss_pred cCCCCCceeEEec
Q 019645 248 FSPSDKLSYWYNF 260 (338)
Q Consensus 248 f~psdKlSY~ynf 260 (338)
|-|.=++.+||++
T Consensus 1964 ~QPYlEANWiHns 1976 (2039)
T PRK15319 1964 IQPFAEANWLHTS 1976 (2039)
T ss_pred EEEEEEEEEEEeC
Confidence 3444444444444
No 30
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=50.93 E-value=15 Score=34.49 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=21.1
Q ss_pred ccceeeeeee-cCceeeeeeccCCCc
Q 019645 214 EDLKLRYCYK-DEALSFIPTISLPSN 238 (338)
Q Consensus 214 ~~~~lrY~yK-D~els~iPsiSlPsn 238 (338)
+-+||||+|. |+.+.+|=|+|+=+.
T Consensus 49 ~GvNvKYRYE~~d~lGvItSfSY~~~ 74 (199)
T PF06316_consen 49 RGVNVKYRYEFDDPLGVITSFSYASG 74 (199)
T ss_pred CccEEEEEEecccceeeeEEEEEeec
Confidence 4579999998 789999999998544
No 31
>KOG3644 consensus Ligand-gated ion channel [Signal transduction mechanisms]
Probab=48.98 E-value=45 Score=34.50 Aligned_cols=122 Identities=22% Similarity=0.283 Sum_probs=63.9
Q ss_pred cEEEEecCcceeeeeeeehhccceeEEeccccccccC----ceEEEEeecccceeeeeeecC-ceeeeeeccCCCccccc
Q 019645 168 KATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILN----GICTAQYEEEDLKLRYCYKDE-ALSFIPTISLPSNALSF 242 (338)
Q Consensus 168 Rat~~FP~Gevs~ee~~~ee~~r~lsv~G~~k~~~ln----G~~tA~y~d~~~~lrY~yKD~-els~iPsiSlPsnalS~ 242 (338)
.....||+|.|-...+..=+ ++-+=-++-=-+| .+-.+.|+=|.-.++|..++. -+.+.+.|.||...+.
T Consensus 148 ~ll~I~pnGtV~~~~Ri~l~----~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~- 222 (457)
T KOG3644|consen 148 VLLMIFPNGTVWYSYRISLT----LPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLP- 222 (457)
T ss_pred eEEEEecCCeEEEEEEEEEe----eceeeehhhCCCccceeeEEEEEeccccceEEEEecCCCCcccccCccCCceecc-
Confidence 45667999999888653211 1111111111111 233445555555556666665 5888899999987763
Q ss_pred ccccccCCCCCceeEEeccCcceeeeeeeecCcceeEeeecC---------cccceeeeeeeeecCCCCcc
Q 019645 243 ALKRQFSPSDKLSYWYNFDSNYWSAVYKHTYGKDFKFKAGYD---------SEVRLGWASLWVGDEGGKAR 304 (338)
Q Consensus 243 aFKR~f~psdKlSY~ynfdt~~WsavyK~~~~k~~K~KaGYd---------S~vrlgWaS~WvG~e~g~aK 304 (338)
+|...+.-. .|. +.+||-.==+ =.||=..||- --|=+.|-|+|.|-+.--|+
T Consensus 223 ----~~~~~~~~~-~y~--~G~~scL~v~---~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PAR 283 (457)
T KOG3644|consen 223 ----SFSTEKCTG-SYT--TGVYSCLRVT---FTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPAR 283 (457)
T ss_pred ----ceeeccccc-ccc--CcceEEEEEE---EEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccce
Confidence 121111111 233 7777643111 1133334442 23567899999987654443
No 32
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=46.80 E-value=2.5e+02 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred cccceechhhhhhhhhcccccCccceeeeecccccccceeeEEEecCCC
Q 019645 103 HLSLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDP 151 (338)
Q Consensus 103 ~fSv~yD~e~rNALvrg~adl~~~l~lk~~hDvKaqQGEV~vvA~LgDP 151 (338)
+|...|-.+.++-++-|+.|-.++|..++.|++-. .--+++.+.+.+.
T Consensus 56 ~f~a~y~~~~~~~~~~~~id~~g~l~~~~~~~~~~-~~~~k~~~~~~~~ 103 (279)
T cd07305 56 QFGATYVGDKQYPFLQGDIDNDGNLNARIIHQLGD-RLRSKLQAQLQDS 103 (279)
T ss_pred EeeeEEecCCCcEEEEEEeCCCCceeEEEEeccCc-ceEEEEEEEecCC
Confidence 56667766555689999999999999999999754 3356666666554
No 33
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=46.45 E-value=6.6 Score=40.10 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=0.0
Q ss_pred ceeeeeccccceechh---hhhhhhhc-cccc--Cccceeeee
Q 019645 96 QLAFTSKHLSLHYDLE---EQNAFVKS-SFDV--GPKLHFRAA 132 (338)
Q Consensus 96 ~~~~vsK~fSv~yD~e---~rNALvrg-~adl--~~~l~lk~~ 132 (338)
++||++..|=-+=|-| +-|+|+-. +-|| |.+.=+|++
T Consensus 70 ElGFTvsTLl~M~deELDdmM~sL~~ifRwdLLVGERYGIKAA 112 (386)
T PF01698_consen 70 ELGFTVSTLLNMTDEELDDMMNSLSQIFRWDLLVGERYGIKAA 112 (386)
T ss_dssp -------------------------------------------
T ss_pred HhcccHHHHhcccHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 5777776665555532 23333321 3344 666655554
No 34
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=44.53 E-value=25 Score=37.00 Aligned_cols=11 Identities=45% Similarity=0.754 Sum_probs=4.9
Q ss_pred CCCCCcccccc
Q 019645 5 SPPSPSLQIPN 15 (338)
Q Consensus 5 ~~~~~~l~~p~ 15 (338)
+|++|++..|-
T Consensus 471 ~p~~p~~~~~p 481 (563)
T KOG1785|consen 471 SPSIPSVDEPP 481 (563)
T ss_pred cCCCCccccCC
Confidence 34444444443
No 35
>PF00778 DIX: DIX domain; InterPro: IPR001158 Dishevelled (Dsh) protein is an important component of the Wnt signal-transduction pathway. It has three relatively conserved domains: DIX, PDZ and DEP. The DIX domain of Dvl-1 (a mammalian Dishevelled homologue) shares 37% identity with the C-terminal region of Axin. Dsh can interact with the Axin/APC/GSK3/beta-catenin complex, and may thus modulate its activity []. The Wnt signalling pathway is conserved in various species from Caenorhabditis elegans to mammals, and plays important roles in development, cellular proliferation, and differentiation. The molecular mechanisms by which the Wnt signal regulates cellular functions are becoming increasingly well understood. Wnt stabilises cytoplasmic beta-catenin, which stimulates the expression of genes including c-myc, c-jun, fra-1, and cyclin D1. Axin and its homologue Axil are components of the Wnt signalling pathway that negatively regulate this pathway. Other components of the Wnt signalling pathway, including Dvl, glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, and adenomatous polyposis coli (APC), interact with Axin, and the phosphorylation and stability of beta-catenin are regulated in the Axin complex. Axil has similar functions to Axin. Thus, Axin and Axil act as scaffold proteins in the Wnt signalling pathway, thereby modulating the Wnt-dependent cellular functions [].; GO: 0004871 signal transducer activity, 0007275 multicellular organismal development, 0005622 intracellular; PDB: 1WSP_B 2D5G_A 3PZ7_A 3PZ8_H.
Probab=43.00 E-value=27 Score=28.57 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=30.6
Q ss_pred cceeeeeeecCceeeeeeccCCCcccccc-cccccCCCCCc-eeEEeccC
Q 019645 215 DLKLRYCYKDEALSFIPTISLPSNALSFA-LKRQFSPSDKL-SYWYNFDS 262 (338)
Q Consensus 215 ~~~lrY~yKD~els~iPsiSlPsnalS~a-FKR~f~psdKl-SY~ynfdt 262 (338)
..++-|-.-||+.-.+=.|..|.+.+.|+ ||+-| +|- .|+|-|-+
T Consensus 3 ~T~V~Y~~~~e~~Py~~~ip~~~~~iTL~dFK~~l---~r~G~yrffFK~ 49 (84)
T PF00778_consen 3 ETKVIYYIDDEETPYVVKIPKPPGEITLGDFKEVL---PRPGNYRFFFKS 49 (84)
T ss_dssp EEEEEEEETT-SS-EEEEESSSSTT-BHHHHHHTC---TS-SGEEEEEEE
T ss_pred ceEEEEEeCCCCCceEEEccCCCCccCHHHHHHhh---cCCCCceEEEEE
Confidence 34566777777877777788888888885 99999 344 88888753
No 36
>PRK15313 autotransport protein MisL; Provisional
Probab=39.07 E-value=34 Score=38.75 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=31.2
Q ss_pred cccCCCCCceeEEeccCcce--eee-eeeecCcc-eeEeeecCcccceeeeeee--eecCCCCcccCC
Q 019645 246 RQFSPSDKLSYWYNFDSNYW--SAV-YKHTYGKD-FKFKAGYDSEVRLGWASLW--VGDEGGKARTAP 307 (338)
Q Consensus 246 R~f~psdKlSY~ynfdt~~W--sav-yK~~~~k~-~K~KaGYdS~vrlgWaS~W--vG~e~g~aK~aP 307 (338)
|+|.|-=+..+||||..+-= +.+ .+..-.++ ..+|+|-+..+.=.| |+| ||.+-|+....+
T Consensus 878 ~~~QPYveANWlHn~~~~~V~md~~~~d~~GtrN~gELK~GVegqLs~nL-slwgnV~~Q~G~~~Ysd 944 (955)
T PRK15313 878 REFQPFVEANWIHNTQPASVKMDDVSSDMRGTKNIGELKVGIEGQITPRL-NVWGNVAQQVGDQGYSN 944 (955)
T ss_pred cEeeeEEEEEEEEecCCccEEeCCeeecccCCceeEEEEeeEEEEecCCE-EEEEEEEEEccCCCccc
Confidence 66777778888888853210 011 11112233 467777776554332 333 355555544433
No 37
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=37.68 E-value=50 Score=34.24 Aligned_cols=23 Identities=26% Similarity=0.075 Sum_probs=18.3
Q ss_pred ccccccCCcceeeeccccccccc
Q 019645 54 VTSEFDSDSSIFLHKISCKLFDS 76 (338)
Q Consensus 54 vtsEfDSe~sIF~NkVSA~vL~G 76 (338)
.|+|=|-|+.+-+|-+|-+...+
T Consensus 385 ~t~~dd~esr~~fhp~s~~p~Pe 407 (437)
T KOG4462|consen 385 RTSADDDESRFSFHPDSDLPIPE 407 (437)
T ss_pred ccccccccccccccchhccCCCc
Confidence 45788888889899999887654
No 38
>PF14173 ComGG: ComG operon protein 7
Probab=35.72 E-value=45 Score=26.76 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCCCCCcEEEEecCcceeeeeeeehhccceeEEecccc
Q 019645 162 PYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIAK 199 (338)
Q Consensus 162 P~~glPRat~~FP~Gevs~ee~~~ee~~r~lsv~G~~k 199 (338)
+.....-.+|.||.|+||.+-..+++..-.+++.=..+
T Consensus 35 ~~~~~~~~~~~y~~G~Vsy~~~~~~~~~~~v~l~~~t~ 72 (95)
T PF14173_consen 35 EDEKSQTGSFQYPDGTVSYQITKEDEDVITVTLQCETK 72 (95)
T ss_pred hhcCCCceEEEecCCEEEEEEEeccceEEEEEEEEEec
Confidence 34455667899999999995333332344445443333
No 39
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=34.47 E-value=4.1e+02 Score=25.22 Aligned_cols=54 Identities=7% Similarity=0.195 Sum_probs=33.2
Q ss_pred cEEEEecCcceeeeeeee---hhccceeEEeccccccccCc-eEEEEeecccceeeee
Q 019645 168 KATFKFPLGEVSLVEREE---EEVKKTLSISGIAKGQILNG-ICTAQYEEEDLKLRYC 221 (338)
Q Consensus 168 Rat~~FP~Gevs~ee~~~---ee~~r~lsv~G~~k~~~lnG-~~tA~y~d~~~~lrY~ 221 (338)
+++=..|||-+-++-+++ +.+++.|-|+|||.-+=.+. =.+....=-|+.|.|.
T Consensus 139 ~V~~VlpNGnL~I~GeK~i~vN~e~e~i~~sGvVRP~DI~~~NtV~S~~iAdArI~Y~ 196 (221)
T PRK12407 139 AVHQVLPNGVLVIRGEKWLTLNQGDEYMRVTGLVRADDIARDNSVSSQRIANARISYA 196 (221)
T ss_pred EEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCeEccceeeeeEEEEc
Confidence 345568999998875332 45588999999998754433 2222223334555554
No 40
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=34.14 E-value=64 Score=33.65 Aligned_cols=9 Identities=11% Similarity=0.408 Sum_probs=3.8
Q ss_pred CCcceeeec
Q 019645 60 SDSSIFLHK 68 (338)
Q Consensus 60 Se~sIF~Nk 68 (338)
||..+=-|+
T Consensus 227 ~E~RVkMnR 235 (457)
T KOG0559|consen 227 SERRVKMNR 235 (457)
T ss_pred chhhhhhHH
Confidence 344444443
No 41
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=32.25 E-value=44 Score=36.29 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=11.2
Q ss_pred eeeccccceechhhhhhhhhccc
Q 019645 99 FTSKHLSLHYDLEEQNAFVKSSF 121 (338)
Q Consensus 99 ~vsK~fSv~yD~e~rNALvrg~a 121 (338)
|+.-.=.+.||..-...|-..++
T Consensus 309 ~W~s~D~~~~D~~r~~~LFEsr~ 331 (817)
T KOG1925|consen 309 LWASLDPVSVDTARLEHLFESRA 331 (817)
T ss_pred hhhccCcceecHHHHHHHHHHhh
Confidence 33333344566655555544444
No 42
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=30.79 E-value=62 Score=33.72 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc
Q 019645 32 PPQPQQQRTSSLFSFPSRPALRV 54 (338)
Q Consensus 32 pppppp~~~~~~~~~~rrp~~rv 54 (338)
||++.++.+..+-.++-||.+..
T Consensus 275 pp~~~qq~p~pp~~~ppRP~m~l 297 (498)
T KOG4849|consen 275 PPQQIQQQPQPPMGQPPRPMMQL 297 (498)
T ss_pred CchhhccCCCCCCCCCCCccccc
Confidence 33333444455555556666544
No 43
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=30.58 E-value=42 Score=36.46 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=7.0
Q ss_pred eeeccccceechh
Q 019645 99 FTSKHLSLHYDLE 111 (338)
Q Consensus 99 ~vsK~fSv~yD~e 111 (338)
|=+|.+-.+|...
T Consensus 318 ~D~~r~~~LFEsr 330 (817)
T KOG1925|consen 318 VDTARLEHLFESR 330 (817)
T ss_pred ecHHHHHHHHHHh
Confidence 5555555555543
No 44
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=30.01 E-value=5.2e+02 Score=25.04 Aligned_cols=149 Identities=20% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCCCceeeeeccccceechhhhhhhhhcccccCccceeeeeccccccccee--eEEEecCCCCceeeecCCCCCCCCCcE
Q 019645 92 IFEPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEV--GVVANLGDPGYALELSSPVPYVGYPKA 169 (338)
Q Consensus 92 ~~~P~~~~vsK~fSv~yD~e~rNALvrg~adl~~~l~lk~~hDvKaqQGEV--~vvA~LgDP~yk~ELSS~vP~~glPRa 169 (338)
...|.|+ +||..||.+ -+||.. ....+=+-..+|+| .+-.+++--+|-.+|...=+.+
T Consensus 25 ~f~P~ma----nfSn~FdFD----PlrGpV-------K~~tQt~~de~g~v~~~v~~~l~~eGCfd~l~~~~~~~----- 84 (236)
T PF06788_consen 25 SFTPEMA----NFSNEFDFD----PLRGPV-------KEFTQTLYDEDGEVTKRVSLTLSREGCFDTLELYDKEN----- 84 (236)
T ss_pred cCCHHHh----hhhhhccCC----cccCCc-------eeeeEEEEcCCCcEEEEEEEEECCccceeeeeeccccc-----
Confidence 3445555 788888772 355554 23445556677888 7777888888988887766655
Q ss_pred EEEecCcceeeeeeeehhccceeEEeccccccccCceEEEEeecccceeeeeeecCceeeeeeccCCCcccccccccccC
Q 019645 170 TFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRYCYKDEALSFIPTISLPSNALSFALKRQFS 249 (338)
Q Consensus 170 t~~FP~Gevs~ee~~~ee~~r~lsv~G~~k~~~lnG~~tA~y~d~~~~lrY~yKD~els~iPsiSlPsnalS~aFKR~f~ 249 (338)
+.++.|. + ++...+.=++.-+.=.|+|-|--. .-.+..|.|.|-|+.+ |=++ =+
T Consensus 85 -----n~~~~Lv-~---d~n~l~d~~~~e~~~~l~~~CqLa-~~~s~gl~~~~nd~Gf--I~~~--------------~~ 138 (236)
T PF06788_consen 85 -----NTHLALV-R---DANYLLDAETQEKRIRLQGKCQLA-ELPSAGLTYEYNDNGF--IVSA--------------KG 138 (236)
T ss_pred -----ccceEEE-E---ecCcccccCCceEEEEEcceeeEE-EccCCceEEEECCCcE--EEEe--------------cc
Confidence 2344444 1 112333334444555678888754 3344557788888664 4222 12
Q ss_pred CCCCceeEEeccCcceeeeeeeecCcceeEeeecCccc
Q 019645 250 PSDKLSYWYNFDSNYWSAVYKHTYGKDFKFKAGYDSEV 287 (338)
Q Consensus 250 psdKlSY~ynfdt~~WsavyK~~~~k~~K~KaGYdS~v 287 (338)
...+..|+|+.+----.--| ...+|.+++.+=|+-+.
T Consensus 139 ~e~~~~Y~Yd~~g~pl~~t~-~~~~k~~~v~~~~~~d~ 175 (236)
T PF06788_consen 139 KETKVTYRYDDEGFPLGKTT-YYDKKVLSVVLTPSADP 175 (236)
T ss_pred CCcceEEEECCCCCccceEE-ecCCceEEEEEeeCCCC
Confidence 33556788887542211111 12235566766666444
No 45
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=29.67 E-value=26 Score=36.48 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=8.6
Q ss_pred ccceeEEeccccc
Q 019645 188 VKKTLSISGIAKG 200 (338)
Q Consensus 188 ~~r~lsv~G~~k~ 200 (338)
+.|+++|+|=|+.
T Consensus 270 gtkl~tvSG~V~~ 282 (461)
T PLN03132 270 GTKLFCISGHVNK 282 (461)
T ss_pred ceEEEEEecccCC
Confidence 5677777776543
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=29.53 E-value=36 Score=23.13 Aligned_cols=18 Identities=22% Similarity=0.848 Sum_probs=11.9
Q ss_pred CCCCceeEEeccCcceeee
Q 019645 250 PSDKLSYWYNFDSNYWSAV 268 (338)
Q Consensus 250 psdKlSY~ynfdt~~Wsav 268 (338)
..+.+ |.||+.++.|+.+
T Consensus 27 ~~~d~-~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDL-WIFDIETNTWTRL 44 (49)
T ss_dssp E---E-EEEETTTTEEEE-
T ss_pred ccCCE-EEEECCCCEEEEC
Confidence 34444 8899999999876
No 47
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=29.30 E-value=2.6e+02 Score=21.36 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=45.8
Q ss_pred cccccccCCCCC-ceeEEeccCcceeeeeeeecCcceeEeeecCcccceeeeeeeeecCCCCccc--CCcceEEEEEeec
Q 019645 242 FALKRQFSPSDK-LSYWYNFDSNYWSAVYKHTYGKDFKFKAGYDSEVRLGWASLWVGDEGGKART--APMKMKVQFMLQV 318 (338)
Q Consensus 242 ~aFKR~f~psdK-lSY~ynfdt~~WsavyK~~~~k~~K~KaGYdS~vrlgWaS~WvG~e~g~aK~--aPmK~K~Q~mLqv 318 (338)
+||.|. +..++ +=.-.||....+..=|.-.+-++-+++.=++|+-. .+-|.+.+..+. .+..- +++|.|
T Consensus 12 ~af~R~-~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~-----~~~g~~~~~~~~v~~~~~g--~~~~~l 83 (95)
T PF02806_consen 12 IAFERK-DKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDE-----EYGGSGKGNSGEVTVDSNG--RITVTL 83 (95)
T ss_dssp EEEEET-TTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCE-----EEEESSCSETSEEEEETTS--EEEEEE
T ss_pred EEEEEc-CCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCcc-----EECCcccccCceEEEeeCC--EEEEEE
Confidence 678887 43333 66778888875666665555556677777777532 122222211111 11111 378888
Q ss_pred CccccccceeEEEEe
Q 019645 319 PQDDIKSSALMFRVK 333 (338)
Q Consensus 319 PQd~~k~~~l~FrvK 333 (338)
|. .++++|++|
T Consensus 84 p~----~s~~vl~~~ 94 (95)
T PF02806_consen 84 PP----YSALVLKLK 94 (95)
T ss_dssp ST----TEEEEEEEE
T ss_pred CC----CEEEEEEEc
Confidence 85 689999987
No 48
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=28.65 E-value=23 Score=29.72 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=21.8
Q ss_pred CceeeecCCCCCCCCCcEEEEecCcceeeeeeeehhccceeEEeccc
Q 019645 152 GYALELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIA 198 (338)
Q Consensus 152 ~yk~ELSS~vP~~glPRat~~FP~Gevs~ee~~~ee~~r~lsv~G~~ 198 (338)
..+.+|+..+-..--+--+.+||+||+.++-.+.-.++.+.-|.-+.
T Consensus 11 ~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 11 DLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTS 57 (116)
T ss_dssp HHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---S
T ss_pred HHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecC
Confidence 33334444443333344567899999999865543445555444443
No 49
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=26.33 E-value=1.3e+02 Score=31.85 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=35.4
Q ss_pred ccccccccccCCCCCceeEEec-------------cCcceeeeeeeecCcceeEeeecCcccce
Q 019645 239 ALSFALKRQFSPSDKLSYWYNF-------------DSNYWSAVYKHTYGKDFKFKAGYDSEVRL 289 (338)
Q Consensus 239 alS~aFKR~f~psdKlSY~ynf-------------dt~~WsavyK~~~~k~~K~KaGYdS~vrl 289 (338)
..++..+-||+..-+|.--|.+ +++.|-+-+++.+++++++.+||..+.|-
T Consensus 353 ~~sl~~dy~l~~~~tLt~G~d~~~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~l~~g~~y~~r~ 416 (649)
T TIGR03509 353 KAELAADYRFTRSVKLTAGYDYKNDDRSYQDRQETDESTVWAKLRYRLNPGLSLNLKGSYSNRD 416 (649)
T ss_pred eceEEEEEEecCCeEEEeeEEEeecccccccccceeeeeEEEEEEEeecCCEEEEEEEEecCCC
Confidence 4455555566555555544444 55677788888899999999999888875
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=26.27 E-value=1.3e+02 Score=31.86 Aligned_cols=16 Identities=19% Similarity=-0.058 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCcccc
Q 019645 40 TSSLFSFPSRPALRVT 55 (338)
Q Consensus 40 ~~~~~~~~rrp~~rvt 55 (338)
.+++..+..|-..-+|
T Consensus 543 ~~~a~~r~~rhp~~~t 558 (563)
T KOG1785|consen 543 RLSASERQPRHPYTNT 558 (563)
T ss_pred CCCccccCCCCCcCCC
Confidence 3444444444333333
No 51
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=25.64 E-value=1.6e+02 Score=24.48 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred eeeecCCCCCCCCC--cEEEEecCcceeeeeeeehhccceeEEeccccccccCceEEEEeecccceeee
Q 019645 154 ALELSSPVPYVGYP--KATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRY 220 (338)
Q Consensus 154 k~ELSS~vP~~glP--Rat~~FP~Gevs~ee~~~ee~~r~lsv~G~~k~~~lnG~~tA~y~d~~~~lrY 220 (338)
.++|...-|+...| .++.+=|.|+.. +|... +.++|++.-+-.-|=.-=.|+-.|+....+++-
T Consensus 16 sLtLtl~~~s~s~p~~~i~w~~P~n~~~-~~~~~--~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 16 NLTLTLHGSSNSLPAFKVEWRGPGNKSK-QILNQ--DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred cEEEEEecCCCCCCCccEEEeCCCCccc-eeccC--CccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 34555555565666 889999999944 43333 489999987765554334577778766665543
No 52
>PF13964 Kelch_6: Kelch motif
Probab=25.37 E-value=43 Score=22.98 Aligned_cols=14 Identities=21% Similarity=0.549 Sum_probs=12.1
Q ss_pred eeEEeccCcceeee
Q 019645 255 SYWYNFDSNYWSAV 268 (338)
Q Consensus 255 SY~ynfdt~~Wsav 268 (338)
-+.||..|+.|+.+
T Consensus 30 v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 30 VERYDPETNTWEQL 43 (50)
T ss_pred EEEEcCCCCcEEEC
Confidence 48999999999875
No 53
>PRK15313 autotransport protein MisL; Provisional
Probab=24.53 E-value=86 Score=35.68 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=24.9
Q ss_pred eeeeccccceechhhhhhhhhcccccCccceeeeeccccc------ccceeeEEEecCCCCcee
Q 019645 98 AFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKA------QQGEVGVVANLGDPGYAL 155 (338)
Q Consensus 98 ~~vsK~fSv~yD~e~rNALvrg~adl~~~l~lk~~hDvKa------qQGEV~vvA~LgDP~yk~ 155 (338)
+++.|.+--|+...+.+--++-++ ..-.|.+-.|+.. ++.-+-+|+-.++...+.
T Consensus 678 s~WlR~~Ggh~r~~d~SGql~tq~---n~y~lQLGgDl~~ws~dG~gr~~lGvMaGYg~s~s~t 738 (955)
T PRK15313 678 SLWMRNVGAHTRFNDGSGQLKTRI---NSYVLQLGGDLAQWSTDGLDRWHIGAMAGYANSQNRT 738 (955)
T ss_pred ceEEEeecccccccCCCCceeeee---eEEEEEeeeehhccccCCCCcEEEEEEeeeccccCcc
Confidence 567777766655543221122221 1112344444322 233566677665555443
No 54
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=24.44 E-value=6.3e+02 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=26.9
Q ss_pred cEEEEecCcceeeeeee---ehhccceeEEeccccccccC
Q 019645 168 KATFKFPLGEVSLVERE---EEEVKKTLSISGIAKGQILN 204 (338)
Q Consensus 168 Rat~~FP~Gevs~ee~~---~ee~~r~lsv~G~~k~~~ln 204 (338)
+++=..|||-+-++-++ .+.+++.|-|+|||.-+=..
T Consensus 145 ~V~~VlpNGnL~I~GeK~i~vN~e~e~IrlsGvVRP~DI~ 184 (226)
T PRK12697 145 TVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGVVNPNTIS 184 (226)
T ss_pred EEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 45567899999887533 24568899999999875443
No 55
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=24.42 E-value=47 Score=34.61 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=6.4
Q ss_pred ceeeeeeeeecC
Q 019645 288 RLGWASLWVGDE 299 (338)
Q Consensus 288 rlgWaS~WvG~e 299 (338)
.||+.++=|=||
T Consensus 346 ~lGsGgviV~de 357 (461)
T PLN03132 346 GLGTAAVIVMDK 357 (461)
T ss_pred CcCcceEEEECC
Confidence 455555555444
No 56
>PF14754 IFR3_antag: Papain-like auto-proteinase
Probab=23.55 E-value=64 Score=30.53 Aligned_cols=38 Identities=37% Similarity=0.616 Sum_probs=32.7
Q ss_pred ccceeeee-----eeeecCCCCcccCCcceEEEEEeecCcccc
Q 019645 286 EVRLGWAS-----LWVGDEGGKARTAPMKMKVQFMLQVPQDDI 323 (338)
Q Consensus 286 ~vrlgWaS-----~WvG~e~g~aK~aPmK~K~Q~mLqvPQd~~ 323 (338)
|.|-||-| +|.||-|-+....---.|..+|---||...
T Consensus 187 eqrtgwlsktglrlwlgdlglginassgglkfhimrgspqraw 229 (249)
T PF14754_consen 187 EQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAW 229 (249)
T ss_pred HhhcccccccchheeecccccccccCCCceEEEEecCCCccee
Confidence 67888887 899999988888888899999999998653
No 57
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=21.75 E-value=64 Score=38.93 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.9
Q ss_pred eeEEEec
Q 019645 142 VGVVANL 148 (338)
Q Consensus 142 V~vvA~L 148 (338)
+-+|+-.
T Consensus 1571 lGvmaGY 1577 (1806)
T PRK14849 1571 LGVMAGY 1577 (1806)
T ss_pred EEEEEEe
Confidence 3344443
No 58
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=21.43 E-value=84 Score=32.68 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=12.8
Q ss_pred ccccccccccceeeeeeecCCC
Q 019645 68 KISCKLFDSLAKLKVSFQNDNK 89 (338)
Q Consensus 68 kVSA~vL~GlAKLrLAfq~D~S 89 (338)
++-..+..|. |||.+.-+|++
T Consensus 33 ALL~DI~KG~-KLKK~~tNDRS 53 (437)
T KOG4462|consen 33 ALLGDIQKGK-KLKKATTNDRS 53 (437)
T ss_pred HHHHHhhhcc-eecceeccccc
Confidence 3333444555 78887777775
No 59
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=21.12 E-value=1.5e+02 Score=17.16 Aligned_cols=22 Identities=36% Similarity=0.464 Sum_probs=14.3
Q ss_pred cCceEEEEeecccceeeeeeec
Q 019645 203 LNGICTAQYEEEDLKLRYCYKD 224 (338)
Q Consensus 203 lnG~~tA~y~d~~~~lrY~yKD 224 (338)
++|.++--|.+..+...-.|||
T Consensus 1 ~~G~~~~yy~nG~l~~~~~y~n 22 (22)
T PF07661_consen 1 LDGEWKFYYENGKLKSEGHYKN 22 (22)
T ss_pred CcceEEEEeCCCCEEEEEEEEC
Confidence 4566666666666666666664
No 60
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=20.97 E-value=6e+02 Score=22.63 Aligned_cols=156 Identities=12% Similarity=0.119 Sum_probs=65.2
Q ss_pred Cccceeeeeccccccc--ceeeEEEecCCCCceeeecCCCCCCCCCcEEEEecCc-ceeeeeeee-hhccceeE-E---e
Q 019645 124 GPKLHFRAAHDVKAQQ--GEVGVVANLGDPGYALELSSPVPYVGYPKATFKFPLG-EVSLVEREE-EEVKKTLS-I---S 195 (338)
Q Consensus 124 ~~~l~lk~~hDvKaqQ--GEV~vvA~LgDP~yk~ELSS~vP~~glPRat~~FP~G-evs~ee~~~-ee~~r~ls-v---~ 195 (338)
.+.|.+++.-.+.... -...+-++...+.|.+.++-.....++=-+.+.+..+ .+++--+-. +-..+.+. - =
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~ 166 (273)
T PF01459_consen 87 SPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGL 166 (273)
T ss_dssp TTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEE
T ss_pred CcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEE
Confidence 4455555544433333 2455556666667777766665222222333344444 444432111 00011111 0 1
Q ss_pred ccccc-cccCceEEEEee--cccceeeeeeec-CceeeeeeccCC----CcccccccccccCCCCCceeEEeccCc-cee
Q 019645 196 GIAKG-QILNGICTAQYE--EEDLKLRYCYKD-EALSFIPTISLP----SNALSFALKRQFSPSDKLSYWYNFDSN-YWS 266 (338)
Q Consensus 196 G~~k~-~~lnG~~tA~y~--d~~~~lrY~yKD-~els~iPsiSlP----snalS~aFKR~f~psdKlSY~ynfdt~-~Ws 266 (338)
|+..+ .--+-++++++. -..+++-|-+|= +.+.+-=.+.+- ...++++++.+|+++. ..+=..|++ ..+
T Consensus 167 ~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~--~vk~kvds~g~v~ 244 (273)
T PF01459_consen 167 SYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSS--TVKAKVDSNGRVS 244 (273)
T ss_dssp EEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTE--EEEEEEETTSEEE
T ss_pred EEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCccc--EEEEEEcCCCEEE
Confidence 11111 001334555553 555666665553 333333333222 2334555555555544 333333332 355
Q ss_pred eeeeeecCcceeEee
Q 019645 267 AVYKHTYGKDFKFKA 281 (338)
Q Consensus 267 avyK~~~~k~~K~Ka 281 (338)
++|+++..+.+++-.
T Consensus 245 ~~~~~~l~~~~~l~l 259 (273)
T PF01459_consen 245 ASYEQKLNPGVTLTL 259 (273)
T ss_dssp EEEEEEECTTEEEEE
T ss_pred EEEEEecCCCcEEEE
Confidence 555555555554433
No 61
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=20.64 E-value=1.1e+02 Score=27.26 Aligned_cols=26 Identities=0% Similarity=0.033 Sum_probs=19.8
Q ss_pred hhhhhhhhcccccCccceeeeecccc
Q 019645 111 EEQNAFVKSSFDVGPKLHFRAAHDVK 136 (338)
Q Consensus 111 e~rNALvrg~adl~~~l~lk~~hDvK 136 (338)
+.|+.+.+..+++|++--+...+-.-
T Consensus 87 ~Ar~~~r~kAa~~gaN~Vvl~~C~~~ 112 (133)
T PRK10781 87 TARKRMQINASKMKANAVLLHSCEIT 112 (133)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeecc
Confidence 68999999999998886665555433
No 62
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=20.63 E-value=2.1e+02 Score=26.41 Aligned_cols=60 Identities=27% Similarity=0.675 Sum_probs=32.7
Q ss_pred cccccccccCCCCCceeEEeccCcceeeeeeeecCcceeEeeecCcccceeeeeeeeecCC---CCccc--CCcceEEEE
Q 019645 240 LSFALKRQFSPSDKLSYWYNFDSNYWSAVYKHTYGKDFKFKAGYDSEVRLGWASLWVGDEG---GKART--APMKMKVQF 314 (338)
Q Consensus 240 lS~aFKR~f~psdKlSY~ynfdt~~WsavyK~~~~k~~K~KaGYdS~vrlgWaS~WvG~e~---g~aK~--aPmK~K~Q~ 314 (338)
|-|.|.+...+++|.+||+.|.=|+ =||..+||+=|. |.+++ ..| -.+
T Consensus 89 l~f~F~~~~~~t~~~~~~F~~~LNF------------------------tGWR~~WV~y~~Dm~g~~~~g~~~m---d~l 141 (178)
T PF09092_consen 89 LRFEFGKGLINTGKPCYWFPFNLNF------------------------TGWRAAWVSYERDMQGRPEEGSKDM---DSL 141 (178)
T ss_dssp EEEEEECT--TTTEECEEEEEE---------------------------SEEEEEEEETTTTSEE---TT--------EE
T ss_pred EEEEecCCcccCCccceEEEEEeec------------------------ccceeeeeeehhhccCCcccCccee---eEE
Confidence 5677888778888998887665432 299999999775 33322 223 245
Q ss_pred EeecCccccccc
Q 019645 315 MLQVPQDDIKSS 326 (338)
Q Consensus 315 mLqvPQd~~k~~ 326 (338)
.+..|+.+-++.
T Consensus 142 ~i~AP~~~~~G~ 153 (178)
T PF09092_consen 142 RITAPANDPSGT 153 (178)
T ss_dssp EEE--TTSSEEE
T ss_pred EEEccccCCCcc
Confidence 566776655443
No 63
>PRK09980 ompL outer membrane porin L; Provisional
Probab=20.52 E-value=2.4e+02 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=30.3
Q ss_pred ecccceeeee-eecC-ceeeeeeccCCCcccccccccccCCCCCceeEEecc
Q 019645 212 EEEDLKLRYC-YKDE-ALSFIPTISLPSNALSFALKRQFSPSDKLSYWYNFD 261 (338)
Q Consensus 212 ~d~~~~lrY~-yKD~-els~iPsiSlPsnalS~aFKR~f~psdKlSY~ynfd 261 (338)
+.+++.+.|. ||-+ .+++-|.++|=+++-.-.+|-. |...|+||
T Consensus 70 ~~~E~~~sY~~~k~~d~~tl~PG~~~~s~s~~~~Y~Py------Lr~~y~f~ 115 (230)
T PRK09980 70 GYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVY------LDVNYKFT 115 (230)
T ss_pred cceEEEEEEEeEecCCCEEEecceEEEecCCCceEeeE------EEEEEEEC
Confidence 3566777997 4855 5999999999988776555432 34455555
No 64
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=20.31 E-value=7.8e+02 Score=23.71 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=33.0
Q ss_pred hhhhhccccc-Cccceeeeeccccc----ccceeeEEEecCCCCceeeecCCCC---CCC--CCcEEEEecCcceeee
Q 019645 114 NAFVKSSFDV-GPKLHFRAAHDVKA----QQGEVGVVANLGDPGYALELSSPVP---YVG--YPKATFKFPLGEVSLV 181 (338)
Q Consensus 114 NALvrg~adl-~~~l~lk~~hDvKa----qQGEV~vvA~LgDP~yk~ELSS~vP---~~g--lPRat~~FP~Gevs~e 181 (338)
|.++++.+|. |+.|.=-...+-|. ++--|.|+..-.+..|-+++.-... ... -.+..|+--.|++.|.
T Consensus 80 td~~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~~y~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (366)
T TIGR03593 80 TDVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGAERLYVAQSGLIGANGADLALPGHRTVWQAEGGEYTLT 157 (366)
T ss_pred CCeEEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCCCceeEEEeccccCCCCcccCCCCCceEEeCCCceeeC
Confidence 4455666665 54443222223332 2224666665455567766553322 111 2355666666665554
No 65
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.10 E-value=1.3e+02 Score=34.25 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=3.6
Q ss_pred ecCCCC
Q 019645 85 QNDNKG 90 (338)
Q Consensus 85 q~D~SG 90 (338)
+-|+||
T Consensus 1080 ~edpSG 1085 (1106)
T KOG0162|consen 1080 REDPSG 1085 (1106)
T ss_pred ccCCCc
Confidence 356666
Done!