Query 019645
Match_columns 338
No_of_seqs 50 out of 52
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 04:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 95.6 0.002 7E-08 59.1 0.0 8 53-60 434-441 (449)
2 4erh_A Outer membrane protein 60.8 2.5 8.5E-05 34.2 0.9 39 55-93 23-71 (148)
3 1nxk_A MAP kinase-activated pr 46.6 5.1 0.00018 36.4 0.6 7 79-85 77-83 (400)
4 3pz8_A Segment polarity protei 32.7 24 0.00081 29.3 2.4 49 214-262 4-53 (106)
5 3nb3_A Outer membrane protein 32.1 9.6 0.00033 33.7 0.0 41 53-93 218-268 (346)
6 1pk8_A RAT synapsin I; ATP bin 30.0 11 0.00038 37.0 0.0 47 106-157 118-166 (422)
7 1zo0_A ODC-AZ, ornithine decar 26.3 50 0.0017 27.9 3.4 41 221-270 2-42 (126)
8 2jv4_A Peptidyl-prolyl CIS/tra 24.1 50 0.0017 23.6 2.6 29 235-263 3-31 (54)
9 3pgw_A U1-A; protein-RNA compl 22.7 1.7E+02 0.0059 24.6 6.1 14 99-112 210-223 (282)
10 1zxu_A AT5G01750 protein; PFAM 21.2 1.2E+02 0.004 26.0 4.8 29 58-90 57-85 (217)
11 4evy_A Aminoglycoside N(6')-ac 20.9 23 0.00077 26.7 0.2 12 236-247 138-149 (166)
12 2jxb_A T-cell surface glycopro 20.8 1E+02 0.0034 22.7 3.8 8 52-59 34-41 (86)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=95.59 E-value=0.002 Score=59.07 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred cccccccC
Q 019645 53 RVTSEFDS 60 (338)
Q Consensus 53 rvtsEfDS 60 (338)
.+|+...+
T Consensus 434 ~~~~~~~~ 441 (449)
T 3iot_A 434 QITAGKLG 441 (449)
T ss_dssp --------
T ss_pred ccCCCccc
Confidence 34444433
No 2
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=60.83 E-value=2.5 Score=34.19 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=25.5
Q ss_pred cccccCCcceeee-------cccccccc---ccceeeeeeecCCCCCCC
Q 019645 55 TSEFDSDSSIFLH-------KISCKLFD---SLAKLKVSFQNDNKGQIF 93 (338)
Q Consensus 55 tsEfDSe~sIF~N-------kVSA~vL~---GlAKLrLAfq~D~SG~~~ 93 (338)
+--||..++.+.. .+...+.. ...+|.+.||+|..|...
T Consensus 23 ~v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~ 71 (148)
T 4erh_A 23 DVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDA 71 (148)
T ss_dssp HHHBCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTC
T ss_pred eeEecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHH
Confidence 3468888877653 22222222 246899999999998754
No 3
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=46.57 E-value=5.1 Score=36.42 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=2.8
Q ss_pred eeeeeee
Q 019645 79 KLKVSFQ 85 (338)
Q Consensus 79 KLrLAfq 85 (338)
++.++.+
T Consensus 77 ~V~~~~~ 83 (400)
T 1nxk_A 77 KVLQIFN 83 (400)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444433
No 4
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=32.75 E-value=24 Score=29.28 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=37.3
Q ss_pred ccceeeeeeecCceeeeeeccCCCccccc-ccccccCCCCCceeEEeccC
Q 019645 214 EDLKLRYCYKDEALSFIPTISLPSNALSF-ALKRQFSPSDKLSYWYNFDS 262 (338)
Q Consensus 214 ~~~~lrY~yKD~els~iPsiSlPsnalS~-aFKR~f~psdKlSY~ynfdt 262 (338)
++-++-|..-||+.-..=.|..|...+.| .||+.|+-.-+-.|+|.|-+
T Consensus 4 ~~TkV~Y~~ddE~tPY~~~Ip~~~~~iTL~dFK~~l~kr~~~nYryfFK~ 53 (106)
T 3pz8_A 4 MDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKS 53 (106)
T ss_dssp -CEEEEEECTTCSSCEEEEESSCSSSCBHHHHHHTCTTSCGGGBCCEEEE
T ss_pred CceEEEEECCCCCCceEEEccCCcccccHHHHHHHHhcCCCccceEEEee
Confidence 45678898999998888888888777887 59999965444468887754
No 5
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=32.08 E-value=9.6 Score=33.72 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred cccccccCCcceeee-------cccccccc---ccceeeeeeecCCCCCCC
Q 019645 53 RVTSEFDSDSSIFLH-------KISCKLFD---SLAKLKVSFQNDNKGQIF 93 (338)
Q Consensus 53 rvtsEfDSe~sIF~N-------kVSA~vL~---GlAKLrLAfq~D~SG~~~ 93 (338)
..+--||..++.+.. ++...+.. ...+|++.||+|..|+..
T Consensus 218 ~~~~~F~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~i~i~Ghtd~~g~~~ 268 (346)
T 3nb3_A 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDA 268 (346)
T ss_dssp ---------------------------------------------------
T ss_pred ccceEecCCccccCHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCCCCHH
Confidence 334457776665543 23222221 235799999999988643
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=29.97 E-value=11 Score=37.04 Aligned_cols=47 Identities=15% Similarity=0.393 Sum_probs=20.2
Q ss_pred ceec--hhhhhhhhhcccccCccceeeeecccccccceeeEEEecCCCCceeee
Q 019645 106 LHYD--LEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALEL 157 (338)
Q Consensus 106 v~yD--~e~rNALvrg~adl~~~l~lk~~hDvKaqQGEV~vvA~LgDP~yk~EL 157 (338)
+.|| .-+.|...+|.= |.+....+.++ ++-.|++++.. .|..|-+.+
T Consensus 118 LVid~~~~dw~K~f~~~~-~~g~y~i~veq---a~~~~i~l~~~-~~~~~~v~~ 166 (422)
T 1pk8_A 118 LVIDEPHTDWAKYFKGKK-IHGEIDIKVEQ---AEFSDLNLVAH-ANGGFSVDM 166 (422)
T ss_dssp EEECCTTSCHHHHHTTCE-ETTTEEEEEEE---ECGGGEEEEEE-TTSCEEEEE
T ss_pred EEeccccchHHHHhcccc-cccchhhHHHH---HhhcCceEEEE-cCCceeEEe
Confidence 3466 234555655542 33333344322 23334555442 344444433
No 7
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=26.28 E-value=50 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=31.9
Q ss_pred eeecCceeeeeeccCCCcccccccccccCCCCCceeEEeccCcceeeeee
Q 019645 221 CYKDEALSFIPTISLPSNALSFALKRQFSPSDKLSYWYNFDSNYWSAVYK 270 (338)
Q Consensus 221 ~yKD~els~iPsiSlPsnalS~aFKR~f~psdKlSY~ynfdt~~WsavyK 270 (338)
-|+|+.||.+=.....+...-+.|+.|.++.-. ..|.+|-.
T Consensus 2 ~ysd~~L~V~ee~~~n~~~~~L~F~~~lTe~~~---------~~W~~Vl~ 42 (126)
T 1zo0_A 2 LYSDERLNVTEEPTSNDKTRVLSIQCTLTEAKQ---------VTWRAVWN 42 (126)
T ss_dssp EEECSSEEEEEECCTTSSCEEEEEEECCTTSCC---------EEEEEEEE
T ss_pred ccccCeeEEEeecCCCCCceEEEEEEEecCCCc---------ceEEEEEe
Confidence 489999999998777777777999999998653 45666654
No 8
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=24.13 E-value=50 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCCCCceeEEeccCc
Q 019645 235 LPSNALSFALKRQFSPSDKLSYWYNFDSN 263 (338)
Q Consensus 235 lPsnalS~aFKR~f~psdKlSY~ynfdt~ 263 (338)
++...|--+.+.|+++++...|.||-.|.
T Consensus 3 m~~~~LP~GW~~~~~~~~Gr~YY~N~~T~ 31 (54)
T 2jv4_A 3 MVNTGLPAGWEVRHSNSKNLPYYFNPATR 31 (54)
T ss_dssp CCCCCCCSSCCEEECSSSSCEEEEETTTT
T ss_pred CCCCCCCCCcEEEEECCCCCEEEEECCCC
Confidence 34444555788999999999999998886
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=22.69 E-value=1.7e+02 Score=24.61 Aligned_cols=14 Identities=7% Similarity=-0.147 Sum_probs=6.3
Q ss_pred eeeccccceechhh
Q 019645 99 FTSKHLSLHYDLEE 112 (338)
Q Consensus 99 ~vsK~fSv~yD~e~ 112 (338)
+..+|+.-..+-++
T Consensus 210 l~v~nl~~~~~~~~ 223 (282)
T 3pgw_A 210 LFLTNLPEETNELM 223 (282)
T ss_pred EEEeCCCCcCCHHH
Confidence 34445554444433
No 10
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=21.24 E-value=1.2e+02 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=12.8
Q ss_pred ccCCcceeeeccccccccccceeeeeeecCCCC
Q 019645 58 FDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKG 90 (338)
Q Consensus 58 fDSe~sIF~NkVSA~vL~GlAKLrLAfq~D~SG 90 (338)
||+++.+... |..+.+..-.++.+ .|.+|
T Consensus 57 ~D~~G~~vf~-V~~~~~~~~~~~~l---~D~~G 85 (217)
T 1zxu_A 57 TDVNGNLLFK-VKEPVFGLHDKRVL---LDGSG 85 (217)
T ss_dssp EETTSCEEEE-EECSSTTCCSEEEE---ECTTS
T ss_pred EeCCCCEEEE-EEccccCCCCEEEE---ECCCC
Confidence 5666554443 23343332223444 45555
No 11
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=20.95 E-value=23 Score=26.65 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=5.0
Q ss_pred CCcccccccccc
Q 019645 236 PSNALSFALKRQ 247 (338)
Q Consensus 236 PsnalS~aFKR~ 247 (338)
+.|.-+.+|=++
T Consensus 138 ~~N~~a~~~y~k 149 (166)
T 4evy_A 138 LDNVISHAMHRS 149 (166)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 344444444333
No 12
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=20.81 E-value=1e+02 Score=22.67 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=3.0
Q ss_pred cccccccc
Q 019645 52 LRVTSEFD 59 (338)
Q Consensus 52 ~rvtsEfD 59 (338)
+|+.-.|+
T Consensus 34 ~~alydy~ 41 (86)
T 2jxb_A 34 VIAKWDYT 41 (86)
T ss_dssp EEESSCCC
T ss_pred EEECccCC
Confidence 33333333
Done!