Query 019646
Match_columns 337
No_of_seqs 176 out of 1168
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00129 rpl1 ribosomal protei 100.0 3.5E-59 7.6E-64 434.3 22.9 212 116-328 17-228 (229)
2 COG0081 RplA Ribosomal protein 100.0 4E-59 8.7E-64 430.3 21.4 208 117-325 19-227 (228)
3 TIGR01169 rplA_bact ribosomal 100.0 8.3E-58 1.8E-62 424.7 23.2 213 114-327 14-226 (227)
4 PRK05424 rplA 50S ribosomal pr 100.0 8.7E-58 1.9E-62 425.3 22.8 215 114-329 15-229 (230)
5 PRK04203 rpl1P 50S ribosomal p 100.0 6.8E-53 1.5E-57 388.8 22.2 199 122-325 8-215 (215)
6 PTZ00225 60S ribosomal protein 100.0 3.7E-50 8E-55 370.6 19.8 198 121-324 9-214 (214)
7 PTZ00029 60S ribosomal protein 100.0 8.1E-49 1.8E-53 362.1 21.0 188 131-324 21-216 (216)
8 KOG1569 50S ribosomal protein 100.0 2.1E-48 4.5E-53 368.8 17.2 302 10-335 1-318 (323)
9 cd00403 Ribosomal_L1 Ribosomal 100.0 4.9E-44 1.1E-48 325.3 21.2 188 133-323 14-208 (208)
10 PF00687 Ribosomal_L1: Ribosom 100.0 1.8E-36 3.8E-41 277.3 19.5 185 132-320 15-220 (220)
11 TIGR01170 rplA_mito ribosomal 100.0 2.7E-36 5.8E-41 262.5 13.3 136 121-258 3-141 (141)
12 KOG1570 60S ribosomal protein 99.9 4.4E-26 9.4E-31 207.5 7.3 189 130-324 22-218 (218)
13 KOG1685 Uncharacterized conser 99.8 1.8E-21 3.8E-26 189.4 7.0 166 160-329 71-264 (343)
14 PF13003 MRL1: Ribosomal prote 97.1 0.00025 5.5E-09 61.5 2.2 66 111-177 63-133 (133)
15 PTZ00029 60S ribosomal protein 59.5 5.1 0.00011 37.5 1.5 21 224-245 117-137 (216)
16 TIGR00853 pts-lac PTS system, 50.9 39 0.00084 27.4 5.2 62 171-232 3-73 (95)
17 cd05565 PTS_IIB_lactose PTS_II 50.4 29 0.00063 28.7 4.4 61 173-233 2-71 (99)
18 PTZ00225 60S ribosomal protein 39.1 21 0.00045 33.5 2.1 31 224-256 115-145 (214)
19 COG1064 AdhP Zn-dependent alco 34.7 55 0.0012 33.0 4.4 49 172-224 191-243 (339)
20 PRK02228 V-type ATP synthase s 29.1 1.5E+02 0.0033 24.2 5.5 81 173-256 2-94 (100)
21 PRK13958 N-(5'-phosphoribosyl) 26.9 35 0.00076 31.5 1.4 25 172-196 3-27 (207)
22 COG0135 TrpF Phosphoribosylant 25.3 39 0.00085 31.7 1.4 25 171-195 3-27 (208)
23 KOG1198 Zinc-binding oxidoredu 23.6 1.4E+02 0.0031 29.8 5.1 45 172-216 184-232 (347)
24 PF00697 PRAI: N-(5'phosphorib 22.6 58 0.0013 29.6 2.0 25 172-196 1-25 (197)
25 PRK09590 celB cellobiose phosp 21.4 1.8E+02 0.004 24.1 4.6 82 173-256 3-101 (104)
26 PRK01189 V-type ATP synthase s 20.5 2.7E+02 0.0058 23.2 5.4 83 173-256 4-97 (104)
27 COG1436 NtpG Archaeal/vacuolar 20.4 2.4E+02 0.0053 23.6 5.1 84 172-256 3-98 (104)
28 PRK01222 N-(5'-phosphoribosyl) 20.3 53 0.0011 30.4 1.3 26 171-196 4-29 (210)
29 PLN02363 phosphoribosylanthran 20.0 57 0.0012 31.4 1.5 26 171-196 48-73 (256)
No 1
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=100.00 E-value=3.5e-59 Score=434.34 Aligned_cols=212 Identities=63% Similarity=1.026 Sum_probs=203.1
Q ss_pred CCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeec
Q 019646 116 TKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVG 195 (337)
Q Consensus 116 ~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG 195 (337)
.+.+....|++++++ ...++|+||||++|+|++|++++++++||+|.|||+++++.+|||||+++.+++|+++||++||
T Consensus 17 ~~~y~l~eAi~~~k~-~~~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~vg 95 (229)
T CHL00129 17 KKLYSPEEAINLLKE-TATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGADIVG 95 (229)
T ss_pred ccccCHHHHHHHHHH-hCcCCCCccEEEEEEECCCCCCCCCceeeEEECCCCCCCCcEEEEECChHhHHHHHHcCCCEeC
Confidence 445566688888876 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeec
Q 019646 196 GDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG 275 (337)
Q Consensus 196 ~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG 275 (337)
++||+++|+++|.+||+|||+|++||+|++|||+||||||||+|+.||+++|+.++|+++++|+++||+++.+++|++||
T Consensus 96 ~edLi~~ik~~~~~fd~~iAt~d~m~~l~kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G~v~~r~dk~g~i~~~VG 175 (229)
T CHL00129 96 SDDLIEEITKGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFG 175 (229)
T ss_pred HHHHHHHHHcCcccCCEEEECHHHHHHHHHhcCcccccCCCCCCCCCCccccHHHHHHHHhcCcEEEEecCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecccc
Q 019646 276 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 328 (337)
Q Consensus 276 ~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~ 328 (337)
+++|++|||.||+.+++++|.+++|.+|++.||+++||||||||+++|++.++
T Consensus 176 ~~~m~~~~l~eNi~a~l~~i~~~~p~~~kg~~ik~v~issTMGp~v~i~~~~~ 228 (229)
T CHL00129 176 KSNFTEEDLLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLL 228 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEeccccc
Confidence 99999999999999999999999999999999999999999999999998765
No 2
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-59 Score=430.27 Aligned_cols=208 Identities=52% Similarity=0.873 Sum_probs=198.8
Q ss_pred CccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeecc
Q 019646 117 KPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 117 ~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
+-+....|+.++.|.+. +||+||||++|+|++||+++++++||.|.|||++|+..+||||++++.+++|++||||+||+
T Consensus 19 ~~~~i~eai~~~ke~~~-~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g~~~~~A~~AGad~Vg~ 97 (228)
T COG0081 19 KLYSLEEAVKLLKETSK-RKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADGEKAEEAKAAGADYVGG 97 (228)
T ss_pred hhhhHHHHHHHHHhccc-cCcceEEEEEEEcccCCCCcccccceeEECCCCCCCccEEEEEcChHhHHHHHHcCCCEecH
Confidence 34455677877777555 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCC-CCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeec
Q 019646 197 DDLIEQIKGG-FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG 275 (337)
Q Consensus 197 ~eLIekIk~~-~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG 275 (337)
+||+++|+++ |.+||+|||+|+|||.+++||++||||||||+|+.||++.|+.++|+++++|+++||+++.+++|++||
T Consensus 98 edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~v~~R~dk~g~ih~~iG 177 (228)
T COG0081 98 EDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTVEFRADKAGVIHVPIG 177 (228)
T ss_pred HHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhcCcEEEEECCCceEEEEec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEec
Q 019646 276 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 325 (337)
Q Consensus 276 ~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~ 325 (337)
+++|++|+|.||+.++++.|.+.+|.+.++.||+++||||||||+++|++
T Consensus 178 k~sf~~e~L~eNi~a~l~~i~~~~p~~~kg~~ik~v~vstTMGP~v~v~~ 227 (228)
T COG0081 178 KVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVDL 227 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcCCcccceEeEEEEecCCCCCEEecc
Confidence 99999999999999999999999999988889999999999999999986
No 3
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=100.00 E-value=8.3e-58 Score=424.69 Aligned_cols=213 Identities=51% Similarity=0.831 Sum_probs=202.9
Q ss_pred cCCCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCe
Q 019646 114 ISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADL 193 (337)
Q Consensus 114 ~~~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~ 193 (337)
...+.+....|+.++++ ...++|+||||++|+|++|++|+++++||+|.|||+++++.+|||||+++.+++|+++||++
T Consensus 14 ~~~~~y~l~eAi~~lk~-~~~~~f~esvel~i~L~id~kK~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~~Ak~aGa~~ 92 (227)
T TIGR01169 14 DRNKLYSLDEAIALLKE-TATAKFDETVEVAIRLGIDPRKSDQQVRGTVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADY 92 (227)
T ss_pred ccCCccCHHHHHHHHHh-hccCCCCCCEEEEEEECcCCCcCCCeeeEEEECCCCCCCCcEEEEEcCchhHHHHHHcCCCE
Confidence 34456666788888876 56799999999999999999999999999999999999999999999999899999999999
Q ss_pred eccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEe
Q 019646 194 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIP 273 (337)
Q Consensus 194 VG~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~ 273 (337)
||++||+++|++++.+||+|||++++||+|+.|||+||||||||+++.|||++|+.++|+++++|+++||+++.|++|++
T Consensus 93 vg~~eLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~~k~gtv~~di~~~I~~~k~g~v~~r~~k~g~i~~~ 172 (227)
T TIGR01169 93 VGSDDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPNPKTGTVTADVAKAVKNAKKGQVEFRADKAGNIHAS 172 (227)
T ss_pred eCHHHHHHHHHcCCccCCEEEECHHHHHHHHHhccccccccCCCCCCCCCccccHHHHHHHHHcCcEEEEeCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccc
Q 019646 274 FGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 327 (337)
Q Consensus 274 IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~ 327 (337)
||+++|++|||.|||.+++++|.+++|.+|+|.||+++||||||||+++|++++
T Consensus 173 VG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lssTmGp~~~i~~~~ 226 (227)
T TIGR01169 173 IGKVSFDSEKLKENLEALLDAIKKAKPSGAKGQYIKNIALSSTMGPGIKVDLSS 226 (227)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHhCccccCCCEEEEEEEECCCCCCEEeccCC
Confidence 999999999999999999999999999999999999999999999999998865
No 4
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=100.00 E-value=8.7e-58 Score=425.28 Aligned_cols=215 Identities=51% Similarity=0.847 Sum_probs=204.2
Q ss_pred cCCCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCe
Q 019646 114 ISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADL 193 (337)
Q Consensus 114 ~~~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~ 193 (337)
...+.+....|+.++++ ...++|+||||++|+|++|++|+++++||+|.|||+.+++.+|||||+++.+++|+++||++
T Consensus 15 ~~~~~y~l~eAi~~lk~-~~~~kF~esvel~v~L~id~kK~~~~irg~v~LP~~~gk~~kI~Vfa~~~~~~~Ak~aGa~~ 93 (230)
T PRK05424 15 DRTKLYSLEEAIALVKE-TATAKFDETVDVAVNLGVDPRKADQQVRGAVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADI 93 (230)
T ss_pred cccCccCHHHHHHHHHh-hccCCCCCcEEEEEEeCCCCCCCCCeeeEEEECCCCCCCCcEEEEECChHhHHHHHHcCCCE
Confidence 44455666688877776 56799999999999999999999999999999999999999999999999899999999999
Q ss_pred eccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEe
Q 019646 194 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIP 273 (337)
Q Consensus 194 VG~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~ 273 (337)
||++||+++|++++.+||+|||++++||+|++|||+||||||||+|+.||+++|+.++|+++++|+++||+++.+++|++
T Consensus 94 vg~eeLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~pk~gTv~~di~~~I~~~k~g~v~~r~~k~g~i~~~ 173 (230)
T PRK05424 94 VGGEDLIEKIKGGWLDFDVVIATPDMMGKVGKLGRILGPRGLMPNPKTGTVTMDVAKAVKEAKAGKVEFRVDKAGIIHAP 173 (230)
T ss_pred eCHHHHHHHHhcCCCcCCEEEECHHHHHHHHHhccccccccCCCCCCCCCcchhHHHHHHHHhcCcEEEEecCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccccc
Q 019646 274 FGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329 (337)
Q Consensus 274 IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~ 329 (337)
||+++|++|||.|||.+++++|.+++|++|++.||+++||||||||+++|+.+++.
T Consensus 174 IG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lssTmGp~~~i~~~~~~ 229 (230)
T PRK05424 174 IGKVSFDAEKLKENLKALIDAIKKAKPATAKGTYIKSVSLSSTMGPGVKVDPSSLA 229 (230)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCccccCCCEEEEEEEECCCCCCEEechHHhc
Confidence 99999999999999999999999999999999999999999999999999998764
No 5
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=100.00 E-value=6.8e-53 Score=388.76 Aligned_cols=199 Identities=34% Similarity=0.560 Sum_probs=186.8
Q ss_pred ccccccccccCCCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHH
Q 019646 122 KAALPLKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLI 200 (337)
Q Consensus 122 ~~al~L~~e~~~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLI 200 (337)
.+|+.++.+.+.+++|+||||++|+| ++|++++++++||+|.|||++++..+|||||+++.+++|+++||++||+.|.+
T Consensus 8 ~eai~~~k~~~~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~~k~~~V~vf~~~~~~~~Ak~aGa~~v~~~e~L 87 (215)
T PRK04203 8 EEAVKEALEEAPKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKGELALQAKEAGADYVITREEL 87 (215)
T ss_pred HHHHHHHHHhcccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCCCCCcEEEEEcChHhHHHHHHcCCCEEeCHHHH
Confidence 46676777667889999999999999 99999999999999999999999999999999999999999999988888888
Q ss_pred HHHHCC-------CCcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEE
Q 019646 201 EQIKGG-------FMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHI 272 (337)
Q Consensus 201 ekIk~~-------~~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v 272 (337)
++|.++ +.+||+||||++|||.|++ |||+||||||||+|++||+ ||.++|+++++ ++.||.++++|+++
T Consensus 88 ~~i~~~~k~~rkl~~~fD~~lA~~~im~~l~k~LGk~lgprgkmP~p~~~t~--di~~~i~~~~~-~~~~r~~k~~~i~v 164 (215)
T PRK04203 88 EELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKMPTPLPPNA--DIKPLVERLKN-TVRIRTKDQPTFHV 164 (215)
T ss_pred HHHhcChHHHhhhhhcCCEEEECHHHHHHHHHHHhhhcCcCCCCCCCcCCCC--CHHHHHHHHhh-ceEEEeCCCCEEEE
Confidence 998876 7899999999999999996 9999999999999999986 99999999996 79999999999999
Q ss_pred eecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEec
Q 019646 273 PFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 325 (337)
Q Consensus 273 ~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~ 325 (337)
+||+++|++|||+||+.+++++|.+.+|++|+ ||+++||||||||+++|+.
T Consensus 165 ~VG~~~m~~e~l~eNi~avl~~i~~~~p~g~~--~Iksi~lktTmgp~i~i~~ 215 (215)
T PRK04203 165 RVGTEDMSPEELAENIDAVLNRIESKLEKGRQ--NIKSVYVKTTMGPAVKVEL 215 (215)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCccccc--cEEEEEEECCCCCCEEeeC
Confidence 99999999999999999999999999999997 5999999999999999974
No 6
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=3.7e-50 Score=370.60 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=182.3
Q ss_pred cccccccccccCCCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 019646 121 GKAALPLKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 199 (337)
Q Consensus 121 ~~~al~L~~e~~~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eL 199 (337)
...|+.++.+..+.++|+||||++|+| |+||++ ++++||+|.|||++++..+||||++++.+++|+++||+++|.++|
T Consensus 9 i~~Av~~~lk~~~~~kF~Etvdl~v~Lk~iDp~k-d~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~aGad~v~~e~l 87 (214)
T PTZ00225 9 LSEAIQAVLKVDKERKFKESIDLQVNLKNYDPQK-DKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKEGVPTMNQEEL 87 (214)
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEeccCcCCCc-CcccceeEECCCCCCCCcEEEEECChHHHHHHHHCCCCEECHHHH
Confidence 345665544456889999999999999 999996 999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCC------CcccEEEeCchhHHHHH-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEE
Q 019646 200 IEQIKGGF------MEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHI 272 (337)
Q Consensus 200 IekIk~~~------~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v 272 (337)
++.+++++ .+||+|||++++||.|+ .||+.|||+||||++. +++.|+.+.|+++++ +++||+++.+++|+
T Consensus 88 ~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~~--~~~~dl~~~i~~~k~-~v~~r~~k~~~~~~ 164 (214)
T PTZ00225 88 KKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTVC--SPSESLPDKVVELRS-TVKFQLKKVLCLGT 164 (214)
T ss_pred HHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCccc--CCccCHHHHHHHHhh-eeEEEecCccEEEe
Confidence 99998884 89999999999999998 4888888889999976 566899999999997 99999999999999
Q ss_pred eecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 273 PFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 273 ~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
+||+++|++|||+||+.|+++.|.+++|.+|+ ||+++||||||||+++|+
T Consensus 165 ~VGk~~m~~e~i~eNi~a~l~~l~~~~p~k~~--nIksv~iktTMGp~~~~~ 214 (214)
T PTZ00225 165 CVGHVEMTEEQLRQNVVMAINFLVSLLKKNWQ--NLKSAYIKSTMGKPQRIY 214 (214)
T ss_pred EEccCCCCHHHHHHHHHHHHHHHHHhCCcCCc--eEeEEEEECCCCCCEeCC
Confidence 99999999999999999999999999999988 599999999999999874
No 7
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=8.1e-49 Score=362.06 Aligned_cols=188 Identities=25% Similarity=0.390 Sum_probs=174.1
Q ss_pred cCCCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHH-----HHH
Q 019646 131 RMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIE-----QIK 204 (337)
Q Consensus 131 ~~~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIe-----kIk 204 (337)
..++++|+||||++|+| ++||++ ++++|++|.|||++++..+|||||+++.+++|+++||++||.++|++ +++
T Consensus 21 ~~~~~~f~esv~~~i~Lk~id~~~-~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~aGa~vvg~edL~~~~k~~k~~ 99 (216)
T PTZ00029 21 EEKKRKFVETVELQIGLKDYDTQK-DKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLV 99 (216)
T ss_pred cccccCCceEEEEEEEcCCCCCCc-CcccceeEecCCCCCCCcEEEEECCcHHHHHHHHcCCCEecHHHHHHhhhhHHHH
Confidence 56789999999999999 899996 99999999999999999999999999999999999999999999998 444
Q ss_pred CCC-CcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChH
Q 019646 205 GGF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSED 282 (337)
Q Consensus 205 ~~~-~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~e 282 (337)
.++ .+||+||||+++||.|++ ||+.|+|++|||.++ |+++|+.++|+++++ +++||+++++|+|++||+++|++|
T Consensus 100 kkl~~~fD~flA~~~im~~l~riLGp~l~p~~K~P~~v--~~~~d~~~~i~~~k~-~v~~r~~k~~~i~v~VG~~~~~~e 176 (216)
T PTZ00029 100 KKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLI--THNDDIEDKINELKS-SVKFQLKKVLCLGVAVGNVEMTEE 176 (216)
T ss_pred hcccccCCEEEECHHHHHHHHHHhccccccCCCCCCcc--cCccCHHHHHHHHHh-eEEEEECCCCEEEEEEcCCCCCHH
Confidence 444 799999999999999984 788888888888887 567899999999985 799999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 283 DLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 283 qI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
||.|||.+++++|.+.+|+||. ||+++||||||||+++|+
T Consensus 177 ~l~eNi~avl~~i~~~~~kg~~--~Iksv~lktTmgp~v~v~ 216 (216)
T PTZ00029 177 QLRQNIVLSINFLVSLLKKNWQ--NIKTLHIKSTMGKPQRIY 216 (216)
T ss_pred HHHHHHHHHHHHHHHHhccccc--cEeEEEEECCCCCCEeCC
Confidence 9999999999999999999997 599999999999999985
No 8
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-48 Score=368.78 Aligned_cols=302 Identities=29% Similarity=0.473 Sum_probs=249.7
Q ss_pred cceeeeccCCCCCCCCCCcccccccccCcccceeeeccc-ccccccccccccccccccccCCCCCCcceeeecccccccc
Q 019646 10 SLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNL-SVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVEADT 88 (337)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
+|||+|+++|++ ||++|.+|++||.-++. + ..+|.. .+....+||-+ ++ ++.+.++ +.+.+++++.
T Consensus 1 ml~l~~~~ss~~-~~~l~~~s~~Sv~~r~~-~-r~~~~~~~~~~k~kk~~a-~e---~~~~~~k------ini~~~~~~~ 67 (323)
T KOG1569|consen 1 MLMLVYQTSSTR-QDLLPTLSACSVAIRVP-N-RHFPAATKSAKKTKKLGA-IE---KKPAAKK------INIERAKADL 67 (323)
T ss_pred Cchhhhhhcccc-ccccCCccceeEEeecc-c-cchhhHhhhhhHHHhhhc-cc---cCchhhh------hhhHhhhccc
Confidence 589999999999 99999999999998876 3 344655 44444555443 22 2333222 3444666666
Q ss_pred cccCCCcccccCCCccCceeccccccCCCccccccccccccccCCCCCC---cceEEEEEEeccCCC---CCCCceeEEE
Q 019646 89 DLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKRDRMSSTKF---TETAEAHFRLNIDPK---YNDQQLRATV 162 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~al~L~~e~~~~~kF---~EsVel~v~Lnidpk---K~~~~irg~V 162 (337)
+. +.+-++.+||++.++ +.++.+.+..|+++++|-+..+-| ++++.+.|.|++... +....+.+.+
T Consensus 68 ~~-------~~e~~pk~dv~lKr~-~kr~~y~vq~a~~~~ke~~~~sa~~~pk~~~~l~i~l~~~a~~~~k~~~~~~~~v 139 (323)
T KOG1569|consen 68 DM-------EGELEPKDDVYLKRL-YKRQIYEVQKAVHLHKELQILSAYNVPKQPVNLRIELNMLAEKETKGVAPLQGSV 139 (323)
T ss_pred ch-------hhccCccchhhhhhh-cCcchhhHHHHHHHHHHhccchhhhCCCCceeeeEEeeeeeeeeccccCCCceeE
Confidence 62 222226799999998 999999999999999986666544 488999998876432 2334566677
Q ss_pred ECCCCCC--CceEEEEEcCc-ccHHHHHHcCCCeeccHHHHHHHHCCCC--cccEEEeCchhHHHHHhhccccCCCCCCC
Q 019646 163 SLPKGTG--KSVKVAVLAQG-EKFNEAKNAGADLVGGDDLIEQIKGGFM--EFDKLIASPDMMVKVASLGKILGPRGLMP 237 (337)
Q Consensus 163 ~LPh~~~--k~~kIcVfa~d-e~~eeAkeaGAd~VG~~eLIekIk~~~~--~fD~fLAt~~imp~L~~LgKiLGpRgkmP 237 (337)
+.|||++ +.++|+|||+| +..++|+++||+++||.|||++|++|.+ +||+++|+|||||.|..|+++|||| ||
T Consensus 140 ~vP~Pf~~ge~r~IavFtn~~~kveeArEaGA~l~GG~dLIkkI~~Gei~~Dyd~~vA~Pdim~~l~~Lr~iL~~r--~P 217 (323)
T KOG1569|consen 140 TVPHPFAHGEIRKIAVFTNDASKVEEAREAGAALAGGTDLIKKIKSGEIVADYDFYVAHPDIMPELNRLRKILGPR--FP 217 (323)
T ss_pred eccccCCCCceEEEEEecCChHHHHHHHhccccccccHHHHHHhhcCeEEEeeceeeecchHHHHHHHHHHHhccc--CC
Confidence 8888864 57789999999 4679999999999999999999999975 5669999999999999999999998 99
Q ss_pred CCCCCCcCCCHHHHHHHHHcC-eEEEEEcCCCeeEEeecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecC
Q 019646 238 NPKAGTVTTNIPQAIEEFKKG-KVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSS 316 (337)
Q Consensus 238 ~pk~GTvt~di~~~Ie~~k~G-~v~~r~~k~g~i~v~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkST 316 (337)
++++|||++||+++|++|++| .+.++.++.++++++||+++|+.|||++||.+++++++.++|+ .+|+||.+++|+|+
T Consensus 218 n~k~gtvg~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt~e~i~~Ni~a~i~av~t~rp~-~~G~fv~ra~L~Ss 296 (323)
T KOG1569|consen 218 NPKRGTVGRNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMTSEQILANIQAVIAAVCTHRPK-ALGPFVVRALLRSS 296 (323)
T ss_pred CcccCccccchHHHHHHhhCCcccccccccCceeeeeeeeecCCHHHHHHHHHHHHHHHHhcCCc-ccCceeeeeEeecC
Confidence 999999999999999999998 5888888889999999999999999999999999999999998 67899999999999
Q ss_pred CCCcEEEeccccccc---cCCC
Q 019646 317 MGPSIRLNIKEMLDY---KLPS 335 (337)
Q Consensus 317 mGpal~I~~~~~~~~---~~~~ 335 (337)
||+++.|+++.++++ +.|+
T Consensus 297 ~g~~i~l~i~p~i~~k~k~~~t 318 (323)
T KOG1569|consen 297 PGEGILLKIDPLIPKKVKNEPT 318 (323)
T ss_pred CCCceeEecccccceeccCCCC
Confidence 999999999999999 4554
No 9
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=100.00 E-value=4.9e-44 Score=325.34 Aligned_cols=188 Identities=47% Similarity=0.769 Sum_probs=177.8
Q ss_pred CCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHCCC-----
Q 019646 133 SSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGF----- 207 (337)
Q Consensus 133 ~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIekIk~~~----- 207 (337)
....|+|+|+++|+|+..+.++++++++.|.|||++++..+||||++|++.++|+++|++++|+++|+++|++++
T Consensus 14 ~~~~~~~~v~l~i~l~~~~~~~~~~~~~~i~LPh~~~~~~~i~v~~~d~~~~~a~~~~a~vig~~~L~~~~~~~~~~~l~ 93 (208)
T cd00403 14 KKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGEDLKKKIKNGEAKKLA 93 (208)
T ss_pred ccCCCCceEEEEEEeCCCCCccccccceeEECCCCCCCCeEEEEEcChHhHHHHHHcCCCEEcHHHHHHHhhcchhhhhh
Confidence 468899999999999766666789999999999999999999999999988999999999999999999999987
Q ss_pred CcccEEEeCchhHHHHH-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChHHHHH
Q 019646 208 MEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLI 286 (337)
Q Consensus 208 ~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~eqI~E 286 (337)
.+||+||||+++|+.+. .|||+||+||+||+++.||+++|+.++|+++++ ++.|+.+++++++++||+++|+++||+|
T Consensus 94 ~~~D~fla~~~~~~~~~~~lgk~~~~k~k~P~~~~~t~~~~l~~~i~~~~~-~~~~~~~~~~~~~v~VG~~~m~~~~l~e 172 (208)
T cd00403 94 KDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAKS-SVEFRLDKGGCIHVPVGKVSMSPEQLVE 172 (208)
T ss_pred hcCCEEEECHHHHHHHHHHhccccccCCCCCcCCCCCCcccHHHHHHHHHh-CeEEEECCCCEEEEEEeCCCCCHHHHHH
Confidence 89999999999999887 799999999999999999999999999999996 7899999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC-CCCCCceeeEEEEecCCCCcEEE
Q 019646 287 NFLAAVKSIEANKP-KGAKGVYWKSAYICSSMGPSIRL 323 (337)
Q Consensus 287 NI~Avi~~l~~~~P-kg~k~~~Iksi~IkSTmGpal~I 323 (337)
|+.++++.|.+++| .+|+ +|+++||||||||+++|
T Consensus 173 Ni~~vi~~i~~~~~~~~~~--~i~~v~lktt~~~~lpI 208 (208)
T cd00403 173 NIEAVINALVKKLPSKKGQ--NIKSIYLKTTMGPSLPI 208 (208)
T ss_pred HHHHHHHHHHHhCCcccCe--EEEEEEEECCCCCCeEC
Confidence 99999999999999 8887 59999999999999986
No 10
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=100.00 E-value=1.8e-36 Score=277.32 Aligned_cols=185 Identities=30% Similarity=0.514 Sum_probs=164.8
Q ss_pred CCCCCCcceEEEEEEeccCCCCCCCce-eEEEECCCCCC-CceEEEEEcCcccHH---------HHHHcCCCeeccHHHH
Q 019646 132 MSSTKFTETAEAHFRLNIDPKYNDQQL-RATVSLPKGTG-KSVKVAVLAQGEKFN---------EAKNAGADLVGGDDLI 200 (337)
Q Consensus 132 ~~~~kF~EsVel~v~LnidpkK~~~~i-rg~V~LPh~~~-k~~kIcVfa~de~~e---------eAkeaGAd~VG~~eLI 200 (337)
....+|+++|+|+|+++..+.+.++++ ++.|.|||++. +..+||||++|++.+ ++.++|++++|+++|+
T Consensus 15 ~~~~~~~~~v~l~i~~~~~~~~~~~~~~~~~i~LPh~~~~~~~~vcli~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~L~ 94 (220)
T PF00687_consen 15 NEDDNFDESVYLQITLKKIPKKKDKSFKPGRIPLPHPLYIKNSKVCLIVKDPQKKAKEKEKLEEKAVEAGAKVIGGEELK 94 (220)
T ss_dssp CCCSSSSTEEEEEEEESSSTTSSCTST-EEEEEBSTSSS-SSSBEEEEESCHHHHHH-------HHHHTTCSEEECHHHH
T ss_pred cccCCCCcEEEEEEEeCcCCCccccccccceeeecCCCCCCccEEEEEecCcchhhhhhhhhhhhhhhcccceecHHHHH
Confidence 356789999999999976677676777 99999999998 888999999887643 3567899999999999
Q ss_pred HH---HHCCC---CcccEEEeCchhHHHHHh-hcccc-CCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEc-CCCeeE
Q 019646 201 EQ---IKGGF---MEFDKLIASPDMMVKVAS-LGKIL-GPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRAD-KTGIVH 271 (337)
Q Consensus 201 ek---Ik~~~---~~fD~fLAt~~imp~L~~-LgKiL-GpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~-k~g~i~ 271 (337)
++ ++.++ .+||+||||+++++.|++ ||++| |+||+||+++..+ .+|+.+.|+++.+| +.|+.. ++++++
T Consensus 95 ~~~~~~~~~r~l~~~~d~flad~~i~~~l~~~Lgk~~~~~k~k~P~~v~~~-~~~l~~~i~~~~~~-~~~~~~~~~~~~~ 172 (220)
T PF00687_consen 95 KKYKTIEAKRKLAKSYDFFLADPRIMPKLPKLLGKIFYGKKGKMPIPVTLS-KEDLKEQIEKALNS-TKFRLSGKGGCIS 172 (220)
T ss_dssp HHHCHHHHCHHHHHCSSEEEEEGGGHHHHHHHTHHHH-CCTTTSCEEBSSH-TSCHHHHHHHHHTE-EEEEETBTSSEEE
T ss_pred HHHHHHHHHHHHHhhcCEEEECHHHHHHHHHhhhhheecccCCcceEEecc-chhHHHHHHHHHCC-EEEEeeccCCeee
Confidence 98 66665 899999999999999997 99999 9999999997422 37999999999974 577777 899999
Q ss_pred EeecCCCCChHHHHHhHHHHHHHHHHh-CCCCCCCceeeEEEEecCCCCc
Q 019646 272 IPFGKADFSEDDLLINFLAAVKSIEAN-KPKGAKGVYWKSAYICSSMGPS 320 (337)
Q Consensus 272 v~IG~~~ms~eqI~ENI~Avi~~l~~~-~Pkg~k~~~Iksi~IkSTmGpa 320 (337)
++||+++|+++||+|||.++++.|.++ .|+||.+ |+++|||||||||
T Consensus 173 v~VG~~~~~~~~i~eNi~~~i~~i~~~~~~~g~~~--I~~i~ikst~s~~ 220 (220)
T PF00687_consen 173 VKVGHLSMTDEQIVENIKAVIKAIVSKPLPKGWKN--IKSIYIKSTMSPS 220 (220)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHTTTSSSSGS--EEEEEEEESSSEE
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHHhhhccCcce--EEEEEEECCCCCC
Confidence 999999999999999999999999999 9999985 9999999999986
No 11
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=100.00 E-value=2.7e-36 Score=262.47 Aligned_cols=136 Identities=40% Similarity=0.640 Sum_probs=123.8
Q ss_pred cccccccccccCCC-CCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCccc-HHHHHHcCCCeeccHH
Q 019646 121 GKAALPLKRDRMSS-TKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEK-FNEAKNAGADLVGGDD 198 (337)
Q Consensus 121 ~~~al~L~~e~~~~-~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~-~eeAkeaGAd~VG~~e 198 (337)
...|+.++++.+.. .+|+|||+++|+|+++++++ .+||+|.|||+++++.+|||||+++. .++|+++||+++|++|
T Consensus 3 i~eA~~~lk~~~~~~~~~~etvel~i~L~~~~~~~--~irg~v~LP~~~~k~~kV~Vf~~~~~~~~~Ak~aGa~~vg~ed 80 (141)
T TIGR01170 3 VIKAFVYLKTKSISMYVPKQSVNLDIGLLMELGKE--SVQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGGDD 80 (141)
T ss_pred HHHHHHHHHHhcccCCCCCceEEEEEEECCCCCCC--CceEEEECCCCCCCCCEEEEECCChHHHHHHHHcCCCEeCHHH
Confidence 34677788764332 39999999999998876544 49999999999999999999999987 6889999999999999
Q ss_pred HHHHHHCCCCc-ccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcC
Q 019646 199 LIEQIKGGFME-FDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG 258 (337)
Q Consensus 199 LIekIk~~~~~-fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G 258 (337)
||++|++++.+ ||+|||+++|||.|+.|||+||||||||+++.|||++|+.++|+++++|
T Consensus 81 Li~~i~~g~~~~fd~~iA~~~~m~~l~~Lg~iLGprGlMP~~k~gTv~~di~~~I~~~k~G 141 (141)
T TIGR01170 81 LIKKIEDGEIKPFDYLIAHPDIVPELAQLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKKG 141 (141)
T ss_pred HHHHHhcCCcccccEEEECHHHHHHHHHhhcccccCcCCCCCCCCCcccCHHHHHHHHhCc
Confidence 99999999999 9999999999999999999999999999999999999999999999876
No 12
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.4e-26 Score=207.47 Aligned_cols=189 Identities=24% Similarity=0.391 Sum_probs=167.1
Q ss_pred ccCCCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHH-----H-
Q 019646 130 DRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIE-----Q- 202 (337)
Q Consensus 130 e~~~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIe-----k- 202 (337)
+..+.++|.|||+++++| |+||. +++++.+.+.|||..+...++|||.+..+..+|++.|.+....++|.+ +
T Consensus 22 ~~~k~~~~~~tielQi~Lk~ydp~-Kdkr~s~~~~l~~~~~p~~k~cv~gd~~h~~~ak~~~~p~m~~d~lkklnk~Kkl 100 (218)
T KOG1570|consen 22 KEFKNRNFVETIELQINLKNYDPQ-KDKRFSGSVKLPHAPRPKMKVCVIGDQQHCDEAKAIDLPAMDIDALKKLNKNKKL 100 (218)
T ss_pred ccccCccceeeeeeeecccccChh-HhCcccceEecCCCCCccceeeeechHHHHHHhhcCCCCCcCHHHHhcCcccchH
Confidence 467789999999999999 99998 788999999999999999999999998888999999999888666542 1
Q ss_pred HHCCCCcccEEEeCchhHHHHH-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCCh
Q 019646 203 IKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSE 281 (337)
Q Consensus 203 Ik~~~~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~ 281 (337)
+++....||+|||..+++.+|+ -||.-|-..|++|+++. -.+|+.+.+++.++ +.+++.++.-|+.|.|||++|++
T Consensus 101 vkklakky~~flase~~ikQlpr~lgp~l~kaGkfps~l~--~~d~l~akv~evk~-t~k~q~kkvKOGavaVGhv~M~d 177 (218)
T KOG1570|consen 101 VKKLAKKYDAFLASESLIKQLPRILGPGLSKAGKFPSLLV--HGDSLYAKVEEVKS-TIKFQMKKVLCLAVAVGHVGMTD 177 (218)
T ss_pred HHHHHHHhhhHHhhHHHHHHhhhhhcccccccccCCcccc--chHHHHHHHHHHHh-hHHHHHHhhhheeeeecCCCCCH
Confidence 2223578999999999988876 36666667799999995 44899999999997 68999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 282 DDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 282 eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
|+|.+||.-.++.+...+.++|+| ++.++|+||||++.++|
T Consensus 178 ~el~~nI~l~vnFlVSlLKknwQN--vral~iKst~g~p~~ly 218 (218)
T KOG1570|consen 178 EELVYNIHLAVNFLVSLLKKNWQN--VRALYIKSTMGKPQRLY 218 (218)
T ss_pred HHHHHhhhhhhhhHHHHHhhcccc--hhheeeccCCCCceecC
Confidence 999999999999999999999996 99999999999998875
No 13
>KOG1685 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.8e-21 Score=189.39 Aligned_cols=166 Identities=19% Similarity=0.243 Sum_probs=141.7
Q ss_pred EEEECCCCC----C--CceEEEEEcCcccH---------HHHHHcCCC----eeccHHHHHHHHCC------CCcccEEE
Q 019646 160 ATVSLPKGT----G--KSVKVAVLAQGEKF---------NEAKNAGAD----LVGGDDLIEQIKGG------FMEFDKLI 214 (337)
Q Consensus 160 g~V~LPh~~----~--k~~kIcVfa~de~~---------eeAkeaGAd----~VG~~eLIekIk~~------~~~fD~fL 214 (337)
..|++||.+ - .+.+||+|++|.+. +...++|.. +|+..+|..++++. ..+||+||
T Consensus 71 ~~IP~k~~~~~~~~~~~~~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkVI~~~~LK~~yksyeaKr~L~~sfDlfl 150 (343)
T KOG1685|consen 71 LKIPLKHLLKKLLLKHDDTDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKVISLSKLKRDYKSYEAKRKLLSSFDLFL 150 (343)
T ss_pred ccccCcchhcccccCCCCCceEEEecCchhccccHHHHHHHHHHcCCccceeeeehHHHHHHHHHHHHHHHHHhhccEEE
Confidence 345566653 2 46799999998642 234668987 78989998888765 46899999
Q ss_pred eCchhHHHHH-hhccccCCCCCCCCCCCCCcCCC--HHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChHHHHHhHHHH
Q 019646 215 ASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTN--IPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAA 291 (337)
Q Consensus 215 At~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~d--i~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~eqI~ENI~Av 291 (337)
||.|++|.|+ -|||.|..+++.|.+.+ ....+ |.++|+++. |.+.|++..+.|+.+++|+++|+.+||.|||.++
T Consensus 151 aD~RV~~~LP~llGK~f~q~kk~Pv~i~-l~k~~~~l~~qi~~a~-~~t~~~~~~g~~~~i~vg~l~~~~~~l~ENv~~v 228 (343)
T KOG1685|consen 151 ADDRVIPLLPKLLGKEFYQKKKVPVSIR-LSKKNELLKQQIENAC-GSTYFRLRKGTSSAIKVGHLGNTSEELAENVVAV 228 (343)
T ss_pred EcchhHhHHHHHhhhhhcccccCceEEE-ecccchHHHHHHHHHh-hhheeeccCCceeEEEeccccccHHHHHHHHHHH
Confidence 9999999999 58999999999999997 33455 899999998 4788998888999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccccc
Q 019646 292 VKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329 (337)
Q Consensus 292 i~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~ 329 (337)
++.|.+.+|.||.+ |+++||||..|++||||.+...
T Consensus 229 lk~l~e~~P~~~~~--Irsl~lKt~~s~aLPly~s~~~ 264 (343)
T KOG1685|consen 229 LKGLSEILPGGWKN--IRSLHLKTSRSPALPLYVSVIS 264 (343)
T ss_pred HHHHHHHccchHhH--hHHHhhhccCCcccceeecccc
Confidence 99999999999996 9999999999999999997643
No 14
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=97.12 E-value=0.00025 Score=61.51 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccccCCCccccccccccccc--cCCCCCCcceEEEEEEeccC--CCCCCCceeEEEECCCCCC-CceEEEEE
Q 019646 111 TATISTKPKKGKAALPLKRD--RMSSTKFTETAEAHFRLNID--PKYNDQQLRATVSLPKGTG-KSVKVAVL 177 (337)
Q Consensus 111 ~l~~~~~~~k~~~al~L~~e--~~~~~kF~EsVel~v~Lnid--pkK~~~~irg~V~LPh~~~-k~~kIcVf 177 (337)
+| +|+++++.++|++||.. ....+.-.|.|++.++|++. .+++-.+|.+.|.|||++. +..+|+||
T Consensus 63 ~l-yPr~Iyeve~Ai~mLKkfQ~lDfT~pkQ~VYldL~Ldm~l~KKkkVePF~s~i~lPypF~~eiNKv~VF 133 (133)
T PF13003_consen 63 RL-YPRPIYEVEKAIDMLKKFQILDFTSPKQPVYLDLTLDMKLEKKKKVEPFASVILLPYPFTSEINKVLVF 133 (133)
T ss_pred ee-ccccHHHHHHHHHHHHhcccccCCCCCCcEEEeeeehhhhccccccCCCccceecccccccccceeeeC
Confidence 66 99999999999999974 55577778999999999654 3445678999999999975 45689886
No 15
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=59.46 E-value=5.1 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.0
Q ss_pred HhhccccCCCCCCCCCCCCCcC
Q 019646 224 ASLGKILGPRGLMPNPKAGTVT 245 (337)
Q Consensus 224 ~~LgKiLGpRgkmP~pk~GTvt 245 (337)
+.|||+||| ++||++|.|++.
T Consensus 117 ~~l~riLGp-~l~p~~K~P~~v 137 (216)
T PTZ00029 117 PQIPRLLGP-GLNKAGKFPTLI 137 (216)
T ss_pred HHHHHHhcc-ccccCCCCCCcc
Confidence 468999999 999999988854
No 16
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=50.91 E-value=39 Score=27.44 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=39.2
Q ss_pred ceEEEEEcCccc---------HHHHHHcCCCeeccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCC
Q 019646 171 SVKVAVLAQGEK---------FNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGP 232 (337)
Q Consensus 171 ~~kIcVfa~de~---------~eeAkeaGAd~VG~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGp 232 (337)
..+|+++|..-. .+.+++.|.++--..-=+.++.....+||++|..|.+...+..+.+.+.+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhh
Confidence 457888887521 24578888874211111223333345799999999998888777776644
No 17
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=50.38 E-value=29 Score=28.69 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=39.7
Q ss_pred EEEEEcCcc---------cHHHHHHcCCCeeccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCC
Q 019646 173 KVAVLAQGE---------KFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPR 233 (337)
Q Consensus 173 kIcVfa~de---------~~eeAkeaGAd~VG~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpR 233 (337)
+|+|+|..= ..+.|++.|.++--..-=..++.....++|++|..|.+.-.+..+.+...+.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhc
Confidence 577888531 1256888898752111112234444568999999999988888777777664
No 18
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=39.06 E-value=21 Score=33.50 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred HhhccccCCCCCCCCCCCCCcCCCHHHHHHHHH
Q 019646 224 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFK 256 (337)
Q Consensus 224 ~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k 256 (337)
+.|||+|||++. |++|.+++. ++.+-|..+.
T Consensus 115 ~~lgk~LGp~~~-p~gK~P~~~-~~~~dl~~~i 145 (214)
T PTZ00225 115 KTVPRLVGPHMH-RMGKFPTVC-SPSESLPDKV 145 (214)
T ss_pred HhhhhhcCCCCC-cCCCCCccc-CCccCHHHHH
Confidence 468999999876 999988853 3334455444
No 19
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=34.72 E-value=55 Score=32.97 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=31.1
Q ss_pred eEEEEEcCccc-HHHHHHcCCCeecc---HHHHHHHHCCCCcccEEEeCchhHHHHH
Q 019646 172 VKVAVLAQGEK-FNEAKNAGADLVGG---DDLIEQIKGGFMEFDKLIASPDMMVKVA 224 (337)
Q Consensus 172 ~kIcVfa~de~-~eeAkeaGAd~VG~---~eLIekIk~~~~~fD~fLAt~~imp~L~ 224 (337)
.+|.+|+..+. .+.|++.||+++-. ++..+++++. ||.+|-+.. -..+.
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~---~d~ii~tv~-~~~~~ 243 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEI---ADAIIDTVG-PATLE 243 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhh---CcEEEECCC-hhhHH
Confidence 46777776654 46688888886533 4555555542 999888865 44443
No 20
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=29.08 E-value=1.5e+02 Score=24.21 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=51.5
Q ss_pred EEEEEcCcccHHHHHHcCCC--e-ecc-HHHHHHHHCC--CCcccEEEeCchhHHHHH-hhccccCCCCCCC----CC-C
Q 019646 173 KVAVLAQGEKFNEAKNAGAD--L-VGG-DDLIEQIKGG--FMEFDKLIASPDMMVKVA-SLGKILGPRGLMP----NP-K 240 (337)
Q Consensus 173 kIcVfa~de~~eeAkeaGAd--~-VG~-~eLIekIk~~--~~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP----~p-k 240 (337)
||+|+++.+..--.+-+|+. + +.. +++.+.+.+. ..+|-.++.+.++...+. .+.+... +...| .| .
T Consensus 2 kIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~-~~~~P~ii~IP~~ 80 (100)
T PRK02228 2 EIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLE-ESVEPTVVTLGGG 80 (100)
T ss_pred EEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHh-cCCCCEEEEECCC
Confidence 79999996666666778996 2 344 3444455543 467999999999988887 4555332 23343 22 1
Q ss_pred CCCcCCCHHHHHHHHH
Q 019646 241 AGTVTTNIPQAIEEFK 256 (337)
Q Consensus 241 ~GTvt~di~~~Ie~~k 256 (337)
.|. +.+.+.|+++.
T Consensus 81 ~~~--~~i~~~v~raI 94 (100)
T PRK02228 81 GGS--GGLREKIKRAI 94 (100)
T ss_pred ccc--hHHHHHHHHHh
Confidence 122 45778888876
No 21
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.95 E-value=35 Score=31.53 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=23.0
Q ss_pred eEEEEEcCcccHHHHHHcCCCeecc
Q 019646 172 VKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 172 ~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
.|||=+++-++++.|.++|||++|.
T Consensus 3 vKICGit~~eda~~~~~~GaD~iGf 27 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQLPIDAIGF 27 (207)
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 6999999999999999999999986
No 22
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=25.26 E-value=39 Score=31.67 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.9
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeec
Q 019646 171 SVKVAVLAQGEKFNEAKNAGADLVG 195 (337)
Q Consensus 171 ~~kIcVfa~de~~eeAkeaGAd~VG 195 (337)
..|||=++..++++.|.++||+++|
T Consensus 3 ~vKICGlt~~eda~~a~~~gad~iG 27 (208)
T COG0135 3 KVKICGLTRLEDAKAAAKAGADYIG 27 (208)
T ss_pred ceEECCCCCHHHHHHHHHcCCCEEE
Confidence 4699999999999999999999998
No 23
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=23.58 E-value=1.4e+02 Score=29.81 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=34.0
Q ss_pred eEEEEEcCcccHHHHHHcCCCee---ccHHHHHHHHCC-CCcccEEEeC
Q 019646 172 VKVAVLAQGEKFNEAKNAGADLV---GGDDLIEQIKGG-FMEFDKLIAS 216 (337)
Q Consensus 172 ~kIcVfa~de~~eeAkeaGAd~V---G~~eLIekIk~~-~~~fD~fLAt 216 (337)
.+|...|..+..+.+++.||+.+ ..+++++++++. ...||++|-.
T Consensus 184 ~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347)
T KOG1198|consen 184 IKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC 232 (347)
T ss_pred cEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence 57777888888888999999865 446677777765 5678887754
No 24
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=22.62 E-value=58 Score=29.56 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEEcCcccHHHHHHcCCCeecc
Q 019646 172 VKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 172 ~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
.|||=+++.+++..+.++|++++|.
T Consensus 1 vKICGi~~~~da~~~~~~g~d~~Gf 25 (197)
T PF00697_consen 1 VKICGITRPEDARLAAELGADYLGF 25 (197)
T ss_dssp EEEE---SHHHHHHHHHHTSSEEEE
T ss_pred CeECCCCcHHHHHHHHHcCCCEEee
Confidence 4899999999999999999999995
No 25
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.39 E-value=1.8e+02 Score=24.08 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=48.3
Q ss_pred EEEEEcCccc---------HHHHHHcCCCe----eccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCC----
Q 019646 173 KVAVLAQGEK---------FNEAKNAGADL----VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGL---- 235 (337)
Q Consensus 173 kIcVfa~de~---------~eeAkeaGAd~----VG~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgk---- 235 (337)
+|+++|..-. .+.|++.|.++ ++..++-+.+ ...+||++|..|.+.-.+..+.+...+++.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~--~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAI--AAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhh--ccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEE
Confidence 6888886421 24578888864 3433332211 134689999999998888777776654422
Q ss_pred CCCCCCCCcCCCHHHHHHHHH
Q 019646 236 MPNPKAGTVTTNIPQAIEEFK 256 (337)
Q Consensus 236 mP~pk~GTvt~di~~~Ie~~k 256 (337)
+|...-|.+.-|+.+++..++
T Consensus 81 I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 81 IPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred eCHHHcCCCccCHHHHHHHHH
Confidence 222222322247777776665
No 26
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=20.45 E-value=2.7e+02 Score=23.17 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=52.4
Q ss_pred EEEEEcCcccHHHHHHcCCC-e--eccHHHHHHHHCC--CCcccEEEeCchhHHHHH-hhccccCCCCCCCCCC----CC
Q 019646 173 KVAVLAQGEKFNEAKNAGAD-L--VGGDDLIEQIKGG--FMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPK----AG 242 (337)
Q Consensus 173 kIcVfa~de~~eeAkeaGAd-~--VG~~eLIekIk~~--~~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk----~G 242 (337)
||+|+.+.+..-=-+-+|.+ + +..++..+++..- ..+|=.++.|.++...++ .+-+.+. ....|.-. +|
T Consensus 4 kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~-~~~~P~II~Ipipg 82 (104)
T PRK01189 4 CITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLE-SSSKPLVVFIPLPG 82 (104)
T ss_pred eEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHh-ccCCCeEEEEeCCC
Confidence 79999988776656778996 3 3445555554442 356888999999888776 3334443 44555322 23
Q ss_pred Cc-CCCHHHHHHHHH
Q 019646 243 TV-TTNIPQAIEEFK 256 (337)
Q Consensus 243 Tv-t~di~~~Ie~~k 256 (337)
.- .+.+.+.|+++.
T Consensus 83 ~~~~~~i~~~ik~ai 97 (104)
T PRK01189 83 ISEEESIEEMAKRIL 97 (104)
T ss_pred CccchhHHHHHHHHh
Confidence 21 236788888876
No 27
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=20.38 E-value=2.4e+02 Score=23.59 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=49.9
Q ss_pred eEEEEEcCcccHHHHHHcCCCe---eccHH--HHHHHHCC-CCcccEEEeCchhHHHHH-hhcccc--CCCC---CCCCC
Q 019646 172 VKVAVLAQGEKFNEAKNAGADL---VGGDD--LIEQIKGG-FMEFDKLIASPDMMVKVA-SLGKIL--GPRG---LMPNP 239 (337)
Q Consensus 172 ~kIcVfa~de~~eeAkeaGAd~---VG~~e--LIekIk~~-~~~fD~fLAt~~imp~L~-~LgKiL--GpRg---kmP~p 239 (337)
.+|||+.+.+..---+=+|+.. +..++ +.+.+... ..+|..++-+.+++..+. .+.++- +... -.|++
T Consensus 3 ~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IPs~ 82 (104)
T COG1436 3 MKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIPSP 82 (104)
T ss_pred eEEEEEEccchhhceeeecceeEEEecChhHHHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeCCC
Confidence 5899999987654444457753 34433 33333322 128999999999999887 455552 1111 13553
Q ss_pred CCCCcCCCHHHHHHHHH
Q 019646 240 KAGTVTTNIPQAIEEFK 256 (337)
Q Consensus 240 k~GTvt~di~~~Ie~~k 256 (337)
...-...+.+.|+++.
T Consensus 83 -~~~~~~~~~~~I~k~v 98 (104)
T COG1436 83 -GKEEEEPLRELIRRAV 98 (104)
T ss_pred -CCCccchHHHHHHHHH
Confidence 2222367888888776
No 28
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=20.27 E-value=53 Score=30.36 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.2
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 019646 171 SVKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 171 ~~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
..|||=+++-++++.|.++|||++|.
T Consensus 4 ~vKICGi~~~eda~~~~~~Gad~iGf 29 (210)
T PRK01222 4 RVKICGITTPEDAEAAAELGADAIGF 29 (210)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 37999999988899999999999996
No 29
>PLN02363 phosphoribosylanthranilate isomerase
Probab=20.03 E-value=57 Score=31.36 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.7
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 019646 171 SVKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 171 ~~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
..|||=+++-++++.|.++|||++|.
T Consensus 48 ~VKICGit~~eda~~a~~~GaD~iGf 73 (256)
T PLN02363 48 LVKMCGITSARDAAMAVEAGADFIGM 73 (256)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999999986
Done!