Query 019646
Match_columns 337
No_of_seqs 176 out of 1168
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_D Ribosomal protein L1; l 100.0 9.1E-86 3.1E-90 639.0 18.7 320 3-336 1-351 (352)
2 3u42_A 50S ribosomal protein L 100.0 4.5E-60 1.5E-64 439.0 19.8 212 114-326 16-228 (229)
3 2wwq_5 50S ribosomal protein L 100.0 1.8E-59 6E-64 436.3 20.4 214 115-329 17-230 (234)
4 3qoy_A 50S ribosomal protein L 100.0 2.4E-59 8.3E-64 437.1 18.1 216 115-330 17-235 (242)
5 3j21_A 50S ribosomal protein L 100.0 1.8E-55 6E-60 405.0 22.0 199 121-324 8-215 (216)
6 2zkr_5 60S ribosomal protein L 100.0 1.5E-54 5.1E-59 397.8 12.2 196 122-324 7-212 (212)
7 1i2a_A 50S ribosomal protein L 100.0 4E-54 1.4E-58 396.7 13.8 196 123-326 8-214 (219)
8 1mzp_A 50S ribosomal protein L 100.0 3E-52 1E-56 383.8 16.8 185 132-324 21-216 (217)
9 2ftc_A Mitochondrial ribosomal 100.0 6E-50 2E-54 361.5 22.3 184 140-329 2-189 (189)
10 3iz5_A 60S ribosomal protein L 100.0 3.4E-52 1.1E-56 383.0 0.4 196 123-324 11-216 (216)
11 3o58_A L10A, 60S ribosomal pro 100.0 2E-52 6.7E-57 384.8 -13.4 186 133-324 24-217 (217)
12 2ov7_A 50S ribosomal protein L 100.0 8.3E-31 2.8E-35 225.8 13.0 117 119-326 20-136 (137)
13 3nbm_A PTS system, lactose-spe 30.5 24 0.00082 28.2 2.1 60 169-232 4-76 (108)
14 1nsj_A PRAI, phosphoribosyl an 26.0 20 0.00068 31.8 1.0 26 171-196 3-28 (205)
15 1v5x_A PRA isomerase, phosphor 25.6 20 0.0007 31.7 1.0 25 172-196 3-27 (203)
16 3iz5_A 60S ribosomal protein L 24.8 29 0.00098 31.1 1.8 23 223-246 116-138 (216)
17 3bbo_G Ribosomal protein L4; l 20.9 21 0.0007 33.9 0.0 14 1-14 1-14 (293)
No 1
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-86 Score=639.03 Aligned_cols=320 Identities=65% Similarity=0.976 Sum_probs=191.8
Q ss_pred ccCCCCccceeeeccCCCCCCCCCCccccccc-ccCcccceeeecccccccccccccccccccccccCCCCCCcceeeec
Q 019646 3 TCGTTPSSLMLTYAATPVHPQDLTPSLSLLSF-KPSKTAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAA 81 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (337)
+||++||||||||||+++| |||||| |+|| +|..+ ..+||||+|+ +++|++.+|++||++++..++ ..-++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 74 (352)
T 3bbo_D 1 MATAAPPSLSLCYASSSFQ-YQQDPS--FQTHFKPLLL-NSSLCRLTLN-QRERSCLKWVDFTSQKQSPKS-VSFRVLAA 74 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCchhHHHhhhhccch-hccCch--hhhhcCccch-hhhcchhhhc-ccccchhhhhhhhhhhhcCCC-cceEEeee
Confidence 5999999999999999999 999999 8898 77644 5579999998 889999999999999999888 66678999
Q ss_pred ccccccccccCCCcccccCCCccCceeccccccCCCcccccccccccc--c----------------------------c
Q 019646 82 SAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAALPLKR--D----------------------------R 131 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~al~L~~--e----------------------------~ 131 (337)
+|||++++ ++||+|.| +..+... ++|.+|+|++.++.+.+ + .
T Consensus 75 ~~~~~~~~----~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~ 146 (352)
T 3bbo_D 75 VAAEAEVA----DMEEEEGE---SGGVATL-PSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQ 146 (352)
T ss_dssp -------------------------------------------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHST
T ss_pred hhhhhhhh----hHHHhhcc---CCccccc-cCCCCccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHh
Confidence 99999998 33333322 2334444 49999999998876532 1 1
Q ss_pred CCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHCCCCccc
Q 019646 132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD 211 (337)
Q Consensus 132 ~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIekIk~~~~~fD 211 (337)
...+||+||||++|+|++||++.++++||+|.|||++++..+||||++++++++|+++||++||++||+++|++++.+||
T Consensus 147 ~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIKkg~~dFD 226 (352)
T 3bbo_D 147 MSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFD 226 (352)
T ss_dssp TCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHTTTCCCCS
T ss_pred ccccCCCceEEEEEEeCCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHHhchhhcC
Confidence 12789999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred EEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChHHHHHhHHHH
Q 019646 212 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAA 291 (337)
Q Consensus 212 ~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~eqI~ENI~Av 291 (337)
+|||+|+||++|++|||+||||||||+|+.|||+.||.++|+++++|+++||+++.+|+|++||+++|++|||.|||.++
T Consensus 227 ~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Av 306 (352)
T 3bbo_D 227 KLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFAT 306 (352)
T ss_dssp EEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHhhcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccccccccCCCC
Q 019646 292 VKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 336 (337)
Q Consensus 292 i~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~~~~~~~~ 336 (337)
++.|.+++|++|+|.||+++||||||||+++||.+++.+|+.|||
T Consensus 307 i~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~~l~d~~~p~~ 351 (352)
T 3bbo_D 307 IKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351 (352)
T ss_dssp HHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC---------
T ss_pred HHHHHHhCcccccCceEEEEEEECCCCCCEEEEhhhcccccCCCC
Confidence 999999999999999999999999999999999999999999987
No 2
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=4.5e-60 Score=439.03 Aligned_cols=212 Identities=49% Similarity=0.839 Sum_probs=202.4
Q ss_pred cCCCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCe
Q 019646 114 ISTKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADL 193 (337)
Q Consensus 114 ~~~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~ 193 (337)
.+.+.+..+.|++++++. ..++|+||||++|+|++|+++.++++||+|.|||++++..+|||||+++.+++|+++||++
T Consensus 16 d~~k~y~~~eAi~~lk~~-~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd~ 94 (229)
T 3u42_A 16 DPNKIYTIDEAAHLVKEL-ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADY 94 (229)
T ss_dssp CTTCCBCHHHHHHHHHHH-CCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSE
T ss_pred CccCCCCHHHHHHHHHHh-CCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCce
Confidence 455566677899888764 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHCCCCcccEEEeCchhHHHHH-hhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEE
Q 019646 194 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHI 272 (337)
Q Consensus 194 VG~~eLIekIk~~~~~fD~fLAt~~imp~L~-~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v 272 (337)
||++||+++|++||.+||+|||+|+||+.|+ .|||+||||||||+|+.||++.|+.++|++++.|+++||.++.|++|+
T Consensus 95 vG~~dLi~kIk~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~dk~g~i~~ 174 (229)
T 3u42_A 95 VGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHA 174 (229)
T ss_dssp EECTHHHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECCTTSEEEE
T ss_pred eCcHHHHHHHhcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeCCCCeecc
Confidence 9999999999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecc
Q 019646 273 PFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 326 (337)
Q Consensus 273 ~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~ 326 (337)
+||+++|++|||.||+.++++.|.+.+|++|+|.||+++||||||||+++|+..
T Consensus 175 ~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~id~~ 228 (229)
T 3u42_A 175 PVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPH 228 (229)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEBCTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEeCCC
Confidence 999999999999999999999999999999999999999999999999999864
No 3
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.8e-59 Score=436.30 Aligned_cols=214 Identities=45% Similarity=0.736 Sum_probs=202.4
Q ss_pred CCCccccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCee
Q 019646 115 STKPKKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLV 194 (337)
Q Consensus 115 ~~~~~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~V 194 (337)
..+.+....|+.+++ ....++|+||||++|+|++||++.++++||+|.|||++++..+|||||+++++++|+++||++|
T Consensus 17 ~~~~y~~~eAv~~lk-~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~v 95 (234)
T 2wwq_5 17 ATKQYDINEAIALLK-ELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELV 95 (234)
T ss_dssp CSSEECHHHHHHHHH-HTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEE
T ss_pred ccCccCHHHHHHHHH-HhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEE
Confidence 344555567887775 4567999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEee
Q 019646 195 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPF 274 (337)
Q Consensus 195 G~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~I 274 (337)
|++||+++|++++.+||+|||+|+||++|++|||+||||||||+|+.|||+.|+.++|+++++|+++||+++.+|+|++|
T Consensus 96 g~edLi~kik~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k~~~i~v~V 175 (234)
T 2wwq_5 96 GMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTI 175 (234)
T ss_dssp CSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSSSCEEEEEE
T ss_pred cHHHHHHHHHcCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEeccccc
Q 019646 275 GKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329 (337)
Q Consensus 275 G~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~ 329 (337)
|+++|++|||.|||.++++.|.+.+|++|+|.||+++||||||||+++|+...+.
T Consensus 176 G~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~id~~~~~ 230 (234)
T 2wwq_5 176 GKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 (234)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEEehHHhh
Confidence 9999999999999999999999999999999999999999999999999987654
No 4
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=2.4e-59 Score=437.13 Aligned_cols=216 Identities=49% Similarity=0.815 Sum_probs=202.2
Q ss_pred CCCccccccccccccccC--CCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCC
Q 019646 115 STKPKKGKAALPLKRDRM--SSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGAD 192 (337)
Q Consensus 115 ~~~~~k~~~al~L~~e~~--~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd 192 (337)
..+-+....|+.++++.+ +.|+|+||||++|+|++||+|+++++||+|.|||++++..+|||||+++.+++|+++||+
T Consensus 17 ~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad 96 (242)
T 3qoy_A 17 RNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGAD 96 (242)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCS
T ss_pred ccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCC
Confidence 344455567887777644 358999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHH-HCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeE
Q 019646 193 LVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 271 (337)
Q Consensus 193 ~VG~~eLIekI-k~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~ 271 (337)
+||++||+++| +++|.+||+|||+|+|||+|++|||+||||||||+|+.|||+.|+.++|+++++|+++||+++.+|+|
T Consensus 97 ~vg~~dLi~ki~k~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~k~~~i~ 176 (242)
T 3qoy_A 97 YVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVH 176 (242)
T ss_dssp EEESHHHHHHHHHHTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECCTTSEEE
T ss_pred EECcHHHHHHHHhCCCccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEecCCcEEE
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecccccc
Q 019646 272 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 330 (337)
Q Consensus 272 v~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~~ 330 (337)
++||+++|++|||.|||.++++.|.+.+|++.++.||+++||||||||+++|+.+.+..
T Consensus 177 v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~~~~~~~ 235 (242)
T 3qoy_A 177 MPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVLK 235 (242)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBCHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEEhhHhCh
Confidence 99999999999999999999999999999976667899999999999999999987654
No 5
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-55 Score=404.99 Aligned_cols=199 Identities=31% Similarity=0.527 Sum_probs=186.8
Q ss_pred cccccccccccCCCCCCcceEEEEEEec-cCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 019646 121 GKAALPLKRDRMSSTKFTETAEAHFRLN-IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 199 (337)
Q Consensus 121 ~~~al~L~~e~~~~~kF~EsVel~v~Ln-idpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eL 199 (337)
...|+.++.+.++++||+||||++|+|+ +||+|+++++||+|.|||+++++.+|||||+++.+++|+++||+++|+++|
T Consensus 8 ~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~L 87 (216)
T 3j21_A 8 IVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAEL 87 (216)
T ss_dssp CCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTHH
T ss_pred HHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHHH
Confidence 3467777777777899999999999996 999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH-------CCCCcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeE
Q 019646 200 IEQIK-------GGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 271 (337)
Q Consensus 200 IekIk-------~~~~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~ 271 (337)
+++. +++.+||+|||+++||+.|++ |||+||||||||+|+.||+ .|+.++|+++++ +++||+++++|+|
T Consensus 88 -~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv-~dv~~~v~~~k~-~v~~r~~k~~~i~ 164 (216)
T 3j21_A 88 -EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTL-TDLTPIVEKLKK-TVRIQLKNNPVVH 164 (216)
T ss_dssp -HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCB-CSHHHHHHHHTC-EEEEEEETTTEEE
T ss_pred -HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcH-HHHHHHHHHHHh-hceeecCCCCEEE
Confidence 5554 357899999999999999997 9999999999999999999 999999999986 8999999999999
Q ss_pred EeecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 272 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 272 v~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
++||+++|++|||.|||.++++.|.+.+|++|+ ||+++||||||||+++||
T Consensus 165 v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k--~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 165 APVGTEKMSDEEIAENIEAVLNAIIGKLERGES--QVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp CCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSC--SEEEEEEEESSSCCEECC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHhcccccc--ceEEEEEECCCCCCEEcc
Confidence 999999999999999999999999999999998 699999999999999987
No 6
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-54 Score=397.81 Aligned_cols=196 Identities=28% Similarity=0.512 Sum_probs=183.8
Q ss_pred ccccc-cccccCCCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 019646 122 KAALP-LKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 199 (337)
Q Consensus 122 ~~al~-L~~e~~~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eL 199 (337)
..|+. |+.+ ...++|+||||++|+| ++||+++++++||+|.|||++++..+|||||+++.+++|+++||++||+++|
T Consensus 7 ~eAv~~llk~-~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~L 85 (212)
T 2zkr_5 7 ENAVSRALED-APERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDEDEL 85 (212)
T ss_dssp HHHHHHHHHT-SCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHHHH
T ss_pred HHHHHHHHHh-cccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHHHH
Confidence 35565 5555 5779999999999999 9999988999999999999999999999999999889999999999999999
Q ss_pred HHHHHC------CC-CcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeE
Q 019646 200 IEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 271 (337)
Q Consensus 200 IekIk~------~~-~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~ 271 (337)
++|++ ++ .+||+|||+++||+.|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++++|+|
T Consensus 86 -~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~g--t~dv~~~i~~~k~~-v~~r~~k~~~i~ 161 (212)
T 2zkr_5 86 -EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDP--DDDVVEVIERMKNT-VQLRSGERRTFH 161 (212)
T ss_dssp -HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCS--SSCCHHHHHHHHTE-EECCCSSSSEEE
T ss_pred -HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCC--CcCHHHHHHHHHcc-eEEEecCCCEEE
Confidence 99987 66 899999999999999998 99999999999999998 69999999999987 999999999999
Q ss_pred EeecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 272 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 272 v~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
++||+++|++|||+|||.+++++|.+.+|++|+ ||+++||||||||+++|.
T Consensus 162 v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~--~ik~v~lksTmgp~i~i~ 212 (212)
T 2zkr_5 162 TRVGAEDMSAENIADNIDVILRRLHADLEKGPL--NIDTVYVKTTMGPAMEVA 212 (212)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTT--TEEEEEEEESSSCCEEC-
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHhCccccc--cEEEEEEECCCCCCEECC
Confidence 999999999999999999999999999999994 799999999999999873
No 7
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=4e-54 Score=396.68 Aligned_cols=196 Identities=27% Similarity=0.478 Sum_probs=182.2
Q ss_pred cccc-cccccCCCCCCcceEEEEEEe-ccCCCCCC-CceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 019646 123 AALP-LKRDRMSSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 199 (337)
Q Consensus 123 ~al~-L~~e~~~~~kF~EsVel~v~L-nidpkK~~-~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eL 199 (337)
.|+. |+.+ ...++|+||||++|+| ++||+ ++ +++||+|.|||++++..+|||||+++.+++|+++||++||+++|
T Consensus 8 eAv~~llk~-~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~L 85 (219)
T 1i2a_A 8 QAVKEAREL-AKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEI 85 (219)
T ss_dssp HHHHHHHHH-SCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHHHH
T ss_pred HHHHHHHHh-cccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHHHH
Confidence 4555 5554 5789999999999999 99999 78 89999999999999999999999999889999999999999999
Q ss_pred HHHHHC------CC-CcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeE
Q 019646 200 IEQIKG------GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 271 (337)
Q Consensus 200 IekIk~------~~-~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~ 271 (337)
++|++ ++ .+||+|||+|+||+.|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++++|+|
T Consensus 86 -~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~g--t~dv~~~v~~~k~~-v~~r~~k~~~i~ 161 (219)
T 1i2a_A 86 -EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPA--NANIKPLVERLKKT-VVINTRDKPYFQ 161 (219)
T ss_dssp -HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECT--TCCCHHHHHHHHTE-EEEECTTSSEEE
T ss_pred -HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCCCEEE
Confidence 99986 34 789999999999999997 99999999999999998 58999999999986 999999999999
Q ss_pred EeecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecc
Q 019646 272 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 326 (337)
Q Consensus 272 v~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~ 326 (337)
++||+++|++|||.|||.+++++|.+.+|++|+ ||+++||||||||+++||.+
T Consensus 162 v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~--~ik~v~lksTmgp~i~iy~~ 214 (219)
T 1i2a_A 162 VLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLY--HIKDAYVKLTMGPAVKVKKE 214 (219)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGG--GEEEEEEEETTSCCEECC--
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHhCCcccc--ceEEEEEECCCCCCEEeEhh
Confidence 999999999999999999999999999999994 79999999999999999875
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=3e-52 Score=383.76 Aligned_cols=185 Identities=26% Similarity=0.480 Sum_probs=176.0
Q ss_pred CCCCCCcceEEEEEEe-ccCCCCCC-CceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCC-eeccHHHHHHHHC---
Q 019646 132 MSSTKFTETAEAHFRL-NIDPKYND-QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGAD-LVGGDDLIEQIKG--- 205 (337)
Q Consensus 132 ~~~~kF~EsVel~v~L-nidpkK~~-~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd-~VG~~eLIekIk~--- 205 (337)
.+.++|+||||++|+| ++||+ ++ +++||+|.|||++++..+|||||+++.+++|+++||+ +||+++| ++|++
T Consensus 21 ~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg~~~L-~ki~~~kk 98 (217)
T 1mzp_A 21 NVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVITREEL-QKLQGQKR 98 (217)
T ss_dssp CCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECCHHHH-HHHTTCHH
T ss_pred ccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeCHHHH-HHHHhhHH
Confidence 3568999999999999 99999 77 8999999999999999999999999988999999998 9999999 99987
Q ss_pred ---CC-CcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCC
Q 019646 206 ---GF-MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFS 280 (337)
Q Consensus 206 ---~~-~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms 280 (337)
++ .+||+|||+++|||.|++ |||+||||||||+|+.| +.|+.++|+++++| ++||+++++|+|++||+++|+
T Consensus 99 ~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~g--t~dv~~~v~~~k~~-v~~r~~k~~~i~v~VG~~~~~ 175 (217)
T 1mzp_A 99 PVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPN--TADISEYINRFKRS-VLVKTKDQPQVQVFIGTEDMK 175 (217)
T ss_dssp HHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCS--SSCCHHHHHHHHTE-EEEECSSSSEEEEEEEETTSC
T ss_pred hhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCCCEEEEEEeCCCCC
Confidence 45 799999999999999997 99999999999999998 59999999999986 999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 281 EDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 281 ~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
+|||+|||.+++++|.+.+|+ |+ ||+++||||||||+++|+
T Consensus 176 ~e~L~eNi~a~i~~l~~~~p~-~~--~ik~v~lksTmgp~i~i~ 216 (217)
T 1mzp_A 176 PEDLAENAIAVLNAIENKAKV-ET--NLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-TT--TEEEEEEEETTSCCEECC
T ss_pred HHHHHHHHHHHHHHHHHhCcc-ch--heEEEEEECCCCCCeeCC
Confidence 999999999999999999999 94 799999999999999975
No 9
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6e-50 Score=361.51 Aligned_cols=184 Identities=26% Similarity=0.425 Sum_probs=171.1
Q ss_pred eEEEEEEeccCCCCCCCceeEEEECCCCCCCce-EEEEEcCc-ccHHHHHHcCCCeeccHHHHHHHHCCCCcccEEEeCc
Q 019646 140 TAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV-KVAVLAQG-EKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASP 217 (337)
Q Consensus 140 sVel~v~LnidpkK~~~~irg~V~LPh~~~k~~-kIcVfa~d-e~~eeAkeaGAd~VG~~eLIekIk~~~~~fD~fLAt~ 217 (337)
.|+|++.|.- +++..++||+|.|||++++.. +|||||++ +.+++|+++||+++|++||+++|++++.+||+|||+|
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~~fD~~iAtp 79 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVP 79 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCccCCEEEECH
Confidence 4677887743 345667799999999987765 99999999 4689999999999999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCC--eeEEeecCCCCChHHHHHhHHHHHHHH
Q 019646 218 DMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTG--IVHIPFGKADFSEDDLLINFLAAVKSI 295 (337)
Q Consensus 218 ~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g--~i~v~IG~~~ms~eqI~ENI~Avi~~l 295 (337)
+||++|++||++|||| ||+|+.|||+.|+.++|+++++|. +||+++.+ |+|++||+++|++|||.||+.|++++|
T Consensus 80 ~~m~~l~~l~~~Lg~K--mP~pk~gTvt~dv~~~v~~~k~g~-~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~l 156 (189)
T 2ftc_A 80 EIMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH-EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEV 156 (189)
T ss_pred HHHHHHHHhhccccCC--CCcccCCCccccHHHHHHHHhcce-EEEeccCCCcEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999975 999999999999999999999885 99999999 999999999999999999999999999
Q ss_pred HHhCCCCCCCceeeEEEEecCCCCcEEEeccccc
Q 019646 296 EANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 329 (337)
Q Consensus 296 ~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~~~~ 329 (337)
.+++|++| |.||+++||||||||+++|+.++++
T Consensus 157 ~~~~p~~~-g~~ik~v~lssTmgp~i~i~~~~l~ 189 (189)
T 2ftc_A 157 CRHRPLNL-GPFVVRAFLRSSTSEGLLLKIDPLL 189 (189)
T ss_pred HHhCchhc-CccEEEEEEECCCCCCEEEehhhcC
Confidence 99999999 8899999999999999999998874
No 10
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=3.4e-52 Score=382.97 Aligned_cols=196 Identities=22% Similarity=0.350 Sum_probs=181.2
Q ss_pred cccccccccC--CCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHH
Q 019646 123 AALPLKRDRM--SSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDL 199 (337)
Q Consensus 123 ~al~L~~e~~--~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eL 199 (337)
.|+.++.+.+ +++||+||||++|+| ++||+ +++++||+|.|||+++++.+|||||+++.+++|+++||++||+++|
T Consensus 11 eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~-kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~vg~~~L 89 (216)
T 3iz5_A 11 DAITQIVGEAREKKRKFTETVELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYMDVESL 89 (216)
T ss_dssp EECTTTSSSSTTHHHHCCCSSCCEEEEEEECCC-CSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCSEEECG
T ss_pred HHHHHHHHhccccccCCCccEEEEEEecccCcc-cccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEeCHHHH
Confidence 4555554544 579999999999999 89998 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCC------CcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEE
Q 019646 200 IEQIKGGF------MEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHI 272 (337)
Q Consensus 200 IekIk~~~------~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v 272 (337)
+++|++++ .+||+|||++++|++|++ ||+.|||+||||+|+.+ +.|+.++|+++++ +++||+++++|+|+
T Consensus 90 ~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~--t~dv~~~v~~~k~-~v~~r~~k~~~i~v 166 (216)
T 3iz5_A 90 KKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSH--QESLEAKVNETKA-TVKFQLKKVLCMGV 166 (216)
T ss_dssp GGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSC--HHHHHHHHHHTBC-CEEECTTSEEEEEE
T ss_pred HHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCC--cccHHHHHHHHHh-hhheeCCCccEEEE
Confidence 99997664 699999999999999995 79999999999999974 5899999999986 89999999999999
Q ss_pred eecCCCCChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 273 PFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 273 ~IG~~~ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
+||+++|++|||+|||.+++++|.+.+|++|+ ||+++||||||||+++||
T Consensus 167 ~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~--~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 167 AVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQ--NVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHCCSSCCSC--SCSEEEECCSSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHhccCCCc--eEEEEEEECCCCCCEecC
Confidence 99999999999999999999999999999887 599999999999999997
No 11
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=2e-52 Score=384.77 Aligned_cols=186 Identities=24% Similarity=0.395 Sum_probs=176.0
Q ss_pred CCCCCcceEEEEEEe-ccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHHHHHHHHCC-----
Q 019646 133 SSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGG----- 206 (337)
Q Consensus 133 ~~~kF~EsVel~v~L-nidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~eLIekIk~~----- 206 (337)
.+++|+||||++|+| ++||++ ++++||+|.|||+++++.+|||||+++.+++|+++||++||+++|+++|+++
T Consensus 24 ~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~vg~~~L~~~~k~~k~~~~ 102 (217)
T 3o58_A 24 KKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKK 102 (217)
T ss_dssp SCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCCCSTTTTTTSCSSSHHHH
T ss_pred cccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEeCHHHHHHHhhchhHhhh
Confidence 679999999999999 999985 9999999999999999999999999999999999999999999999988876
Q ss_pred -CCcccEEEeCchhHHHHHh-hccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCCCChHHH
Q 019646 207 -FMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDL 284 (337)
Q Consensus 207 -~~~fD~fLAt~~imp~L~~-LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ms~eqI 284 (337)
..+||+|||+++||++|++ ||+.|||+||||+|+ |++.|+.++|+++++ +++||+++++|+|++||+++|++|||
T Consensus 103 l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~--~vt~dv~~~v~~~k~-~v~~r~~k~~~i~v~IG~~~~~~e~l 179 (217)
T 3o58_A 103 LSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPV--SHNDDLYGKVTDVRS-TIKFQLKKVLCLAVAVGNVEMEEDVL 179 (217)
T ss_dssp HHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCS--CTTTCSSSGGGGTTS-CCSCCCCSSSCCCCCCCSSSCCSHHH
T ss_pred hhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCc--CCchhHHHHHHHHhc-eEEEEeCCCCEEEEeeccCCCCHHHH
Confidence 3799999999999999985 899999999999999 578999999999986 89999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEe
Q 019646 285 LINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 324 (337)
Q Consensus 285 ~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~ 324 (337)
+|||.+++++|.+.+|++|. ||+++||||||||+++||
T Consensus 180 ~eNi~avi~~l~~~~pk~~~--~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 180 VNQILMSVNFFVSLLKKNWQ--NVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp HHHHHHTCSTTTCCSSSCSC--CCSCCCCCSSSSCSCCC-
T ss_pred HHHHHHHHHHHHHhcccCCc--eEEEEEEECCCCCCEecC
Confidence 99999999999999999987 599999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.97 E-value=8.3e-31 Score=225.76 Aligned_cols=117 Identities=45% Similarity=0.804 Sum_probs=108.4
Q ss_pred cccccccccccccCCCCCCcceEEEEEEeccCCCCCCCceeEEEECCCCCCCceEEEEEcCcccHHHHHHcCCCeeccHH
Q 019646 119 KKGKAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDD 198 (337)
Q Consensus 119 ~k~~~al~L~~e~~~~~kF~EsVel~v~LnidpkK~~~~irg~V~LPh~~~k~~kIcVfa~de~~eeAkeaGAd~VG~~e 198 (337)
+....|+.++. ....+||+||||++|+||+||++.|+++||+|.|||+
T Consensus 20 y~~~eAi~~~k-~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g------------------------------- 67 (137)
T 2ov7_A 20 YTIDEAAHLVK-ELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG------------------------------- 67 (137)
T ss_dssp BCHHHHHHHHH-HTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS-------------------------------
T ss_pred cCHHHHHHHHH-hcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC-------------------------------
Confidence 33446776664 5678999999999999999999989999999999998
Q ss_pred HHHHHHCCCCcccEEEeCchhHHHHHhhccccCCCCCCCCCCCCCcCCCHHHHHHHHHcCeEEEEEcCCCeeEEeecCCC
Q 019646 199 LIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKAD 278 (337)
Q Consensus 199 LIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGpRgkmP~pk~GTvt~di~~~Ie~~k~G~v~~r~~k~g~i~v~IG~~~ 278 (337)
|+++||+++.+|+|++||+++
T Consensus 68 -----------------------------------------------------------g~v~fr~dk~~~ih~~VGk~s 88 (137)
T 2ov7_A 68 -----------------------------------------------------------GRIEFRNDKTGAIHAPVGKAS 88 (137)
T ss_dssp -----------------------------------------------------------CEEEEECCTTSEEEEEEEETT
T ss_pred -----------------------------------------------------------CeEEEEECCCCEEEEEEecCC
Confidence 799999999999999999999
Q ss_pred CChHHHHHhHHHHHHHHHHhCCCCCCCceeeEEEEecCCCCcEEEecc
Q 019646 279 FSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 326 (337)
Q Consensus 279 ms~eqI~ENI~Avi~~l~~~~Pkg~k~~~Iksi~IkSTmGpal~I~~~ 326 (337)
|++|||.||+.|++++|.+.+|++|+|.||+++||||||||+++|+..
T Consensus 89 f~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~id~~ 136 (137)
T 2ov7_A 89 FPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 136 (137)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTT
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEecCC
Confidence 999999999999999999999999999999999999999999998763
No 13
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.54 E-value=24 Score=28.24 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=38.9
Q ss_pred CCceEEEEEcCccc---------HHHHHHcCCCee----ccHHHHHHHHCCCCcccEEEeCchhHHHHHhhccccCC
Q 019646 169 GKSVKVAVLAQGEK---------FNEAKNAGADLV----GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGP 232 (337)
Q Consensus 169 ~k~~kIcVfa~de~---------~eeAkeaGAd~V----G~~eLIekIk~~~~~fD~fLAt~~imp~L~~LgKiLGp 232 (337)
.+..+|+++|..-. .+.|++.|.++- +..+ +.....+||++|..|.+.-.+..+.+...+
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~ 76 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HYDIMGVYDLIILAPQVRSYYREMKVDAER 76 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CTTTGGGCSEEEECGGGGGGHHHHHHHHTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HHhhccCCCEEEEChHHHHHHHHHHHHhhh
Confidence 45678999997521 256778887632 2222 233346799999999888777666666654
No 14
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=26.03 E-value=20 Score=31.76 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.3
Q ss_pred ceEEEEEcCcccHHHHHHcCCCeecc
Q 019646 171 SVKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 171 ~~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
..|||=+++-++++.|.++|||++|.
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGf 28 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGF 28 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 36999999988999999999999995
No 15
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=25.57 E-value=20 Score=31.69 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=22.8
Q ss_pred eEEEEEcCcccHHHHHHcCCCeecc
Q 019646 172 VKVAVLAQGEKFNEAKNAGADLVGG 196 (337)
Q Consensus 172 ~kIcVfa~de~~eeAkeaGAd~VG~ 196 (337)
.|||=+++-++++.|.++|||++|.
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGf 27 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGF 27 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 6899999988899999999999995
No 16
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=24.84 E-value=29 Score=31.08 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=18.1
Q ss_pred HHhhccccCCCCCCCCCCCCCcCC
Q 019646 223 VASLGKILGPRGLMPNPKAGTVTT 246 (337)
Q Consensus 223 L~~LgKiLGpRgkmP~pk~GTvt~ 246 (337)
++.|||+||| ++||..+.++...
T Consensus 116 ~~~l~riLG~-~l~p~gk~P~p~~ 138 (216)
T 3iz5_A 116 IKQIPRLLGP-GLNKAGKFPTLVS 138 (216)
T ss_dssp HHHHHHHHTT-TCSCCTTTTCBCS
T ss_pred HHHHHHHhcc-cccccCCcCCCcC
Confidence 3478899998 7999988887655
No 17
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.89 E-value=21 Score=33.91 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCccCCCCccceee
Q 019646 1 MATCGTTPSSLMLT 14 (337)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (337)
||+|+++|.||.+.
T Consensus 1 ~~~~~~~~~~~~~~ 14 (293)
T 3bbo_G 1 MATSTSSSLSLSFF 14 (293)
T ss_dssp --------------
T ss_pred CCccccCcceeeee
Confidence 99998888777754
Done!