RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019646
(337 letters)
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 357 bits (917), Expect = e-123
Identities = 210/361 (58%), Positives = 242/361 (67%), Gaps = 43/361 (11%)
Query: 6 TTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRASKWLDLYP 65
P SL L YA++ Q FKP SLC L++ ER KW+D
Sbjct: 4 AAPPSLSLCYASSSFQYQQDPSFQ--THFKP-LLLNSSLCR-LTLNQRERSCLKWVDFTS 59
Query: 66 LRQNKNGLPGHMLAAASAVEADTDLATDDVEDDTQGGTEGATATATATISTKPKKGKAAL 125
+Q+ + +LAA +A + D + + AT TKPKKGKAAL
Sbjct: 60 QKQSPKSVSFRVLAAVAA---------EAEVADMEEEEGESGGVATLPSPTKPKKGKAAL 110
Query: 126 PLKRDR------------------------------MSSTKFTETAEAHFRLNIDPKYND 155
PLK DR MSSTKF ETAEAHFRLNIDPKYND
Sbjct: 111 PLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYND 170
Query: 156 QQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIA 215
QQLRATVSLPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA
Sbjct: 171 QQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIA 230
Query: 216 SPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFG 275
+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFG
Sbjct: 231 TSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFG 290
Query: 276 KADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 335
K +F E+DLLIN A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PS
Sbjct: 291 KLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 350
Query: 336 N 336
N
Sbjct: 351 N 351
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
nucleotide-binding, protein biosynthesis, translation,
zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Length = 234
Score = 306 bits (787), Expect = e-105
Identities = 93/197 (47%), Positives = 125/197 (63%)
Query: 132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGA 191
+++ KF E+ + L ID + +DQ +R LP GTG+SV+VAV QG AK AGA
Sbjct: 33 LATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGA 92
Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQA 251
+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A
Sbjct: 93 ELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEA 152
Query: 252 IEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSA 311
++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K
Sbjct: 153 VKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKV 212
Query: 312 YICSSMGPSIRLNIKEM 328
I ++MG + ++ +
Sbjct: 213 SISTTMGAGVAVDQAGL 229
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 305 bits (784), Expect = e-105
Identities = 102/196 (52%), Positives = 145/196 (73%), Gaps = 1/196 (0%)
Query: 132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGA 191
+++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V +A+GEK EA+ AGA
Sbjct: 33 LATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA 92
Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQ 250
D VGG+++I++I G+M+FD ++A+PD+M V S LG+ILGPRGL+PNPKAGTV NI +
Sbjct: 93 DYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGE 152
Query: 251 AIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKS 310
I E K G++E+R DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S
Sbjct: 153 IIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRS 212
Query: 311 AYICSSMGPSIRLNIK 326
Y+ ++MGPS+R+N
Sbjct: 213 VYVTTAMGPSVRINPH 228
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 305 bits (784), Expect = e-104
Identities = 104/209 (49%), Positives = 144/209 (68%), Gaps = 1/209 (0%)
Query: 124 ALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKF 183
L K + + +F ET E RLN+DP+Y DQ +R +V LP G GK +KV V A+GE
Sbjct: 28 DLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYA 87
Query: 184 NEAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAG 242
+A+ AGAD VGGD+LI +I K + +FD IA+P+MM KVA LG+ILGPRGLMP+PK G
Sbjct: 88 KKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTG 147
Query: 243 TVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKG 302
TVTTN+ QAI++ K+G+VE++ DK G VH+P GK F ++ L+ N AA+ ++ KP G
Sbjct: 148 TVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPG 207
Query: 303 AKGVYWKSAYICSSMGPSIRLNIKEMLDY 331
AKG Y K+ + +M PS++L+I E+L
Sbjct: 208 AKGQYIKNMAVSLTMSPSVKLDINEVLKK 236
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 267 bits (686), Expect = 1e-90
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 6/191 (3%)
Query: 142 EAHFRLNIDPKYNDQQLRATVSLPKGTGKSV-KVAVLAQ-GEKFNEAKNAGADLVGGDDL 199
+ + + K N + + +SLP + KVAV + + A+ GA GG L
Sbjct: 2 DLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSL 61
Query: 200 IEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKG- 258
I++I + D +A P++M ++ L K L + P ++ +IP+ +E FK G
Sbjct: 62 IQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGH 119
Query: 259 KVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMG 318
+++ ++ + D S D + N A + + ++P G + A++ SS
Sbjct: 120 EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPL-NLGPFVVRAFLRSSTS 178
Query: 319 PSIRLNIKEML 329
+ L I +L
Sbjct: 179 EGLLLKIDPLL 189
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 252 bits (645), Expect = 6e-84
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 13/213 (6%)
Query: 124 ALPLKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEK 182
A+ R+ FT++ E L ID + + +++ V LP G GK K+AV+ G+
Sbjct: 9 AVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDL 68
Query: 183 FNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGL 235
+A+ G ++ +++ E +++ D IA D+M + +G ILGPRG
Sbjct: 69 AKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGK 128
Query: 236 MPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSI 295
MP P NI +E KK V DK + G +++ ++ N A + +
Sbjct: 129 MPKPVPANA--NIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQIVDNIEAVLNVV 185
Query: 296 EANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 328
KG + K AY+ +MGP++++ ++
Sbjct: 186 AKKYEKGLY--HIKDAYVKLTMGPAVKVKKEKA 216
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 245 bits (628), Expect = 2e-81
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 131 RMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNA 189
FT++ E ID K D +LR V LPK K+ +V V+ E+ AK A
Sbjct: 20 YNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKA 79
Query: 190 GADLVGGDDLIEQIKGGFMEFDKL-------IASPDMMVKVAS-LGKILGPRGLMPNPKA 241
+V + +++++G KL + + + M LG LGPRG P P
Sbjct: 80 SPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLP 139
Query: 242 GTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPK 301
T +I + I FK+ V + V + G D +DL N +A + +IE
Sbjct: 140 NTA--DISEYINRFKRS-VLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAK- 195
Query: 302 GAKGVYWKSAYICSSMGPSIRL 323
++ Y+ ++MG ++++
Sbjct: 196 --VETNLRNIYVKTTMGKAVKV 215
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 240 bits (615), Expect = 1e-79
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Query: 132 MSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAG 190
F ET + L ++D ++ +V LP GTG+ + V A+GE A+
Sbjct: 17 APERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVA 76
Query: 191 ADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGT 243
D++ D+L E K + D IA +M + LG +LGPRG MP P
Sbjct: 77 DDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPL--D 134
Query: 244 VTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGA 303
++ + IE K V+ R+ + H G D S +++ N ++ + A+ KG
Sbjct: 135 PDDDVVEVIERM-KNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGP 193
Query: 304 KGVYWKSAYICSSMGPSIRL 323
+ Y+ ++MGP++ +
Sbjct: 194 L--NIDTVYVKTTMGPAMEV 211
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 221 bits (564), Expect = 9e-72
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 13/209 (6%)
Query: 122 KAALPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGE 181
K L + F ET E L D++ ++ LP ++ + +
Sbjct: 14 KELLKYSNET-KKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAF 72
Query: 182 KFNEAKNAGADLVGGDDLIE------QIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRG 234
+ AK+ G D + DDL + IK +++ IAS ++ +V LG L G
Sbjct: 73 DVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAG 132
Query: 235 LMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKS 294
P P + ++ + + + ++++ K + + G + ED L+ L +V
Sbjct: 133 KFPTPV--SHNDDLYGKVTDV-RSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNF 189
Query: 295 IEANKPKGAKGVYWKSAYICSSMGPSIRL 323
+ K S + SSMGP+ RL
Sbjct: 190 FVSLLKK--NWQNVGSLVVKSSMGPAFRL 216
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 219 bits (559), Expect = 4e-71
Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 127 LKRDRMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEA 186
+ R KFTET E L D++ +V LP ++V +L + ++A
Sbjct: 17 VGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQA 76
Query: 187 KNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMV---KVASLGKILGPRGLMPNPKAGT 243
+ G D + + L + K + + + + ++LGP GL K T
Sbjct: 77 EKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGP-GLNKAGKFPT 135
Query: 244 VTT---NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKP 300
+ + ++ + E K V+++ K + + G E + N +V + +
Sbjct: 136 LVSHQESLEAKVNE-TKATVKFQLKKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLK 194
Query: 301 KGAKGVYWKSAYICSSMGPSIRL 323
+ Y+ S+MG +R+
Sbjct: 195 --KNWQNVRCLYVKSTMGKRVRV 215
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 173 bits (440), Expect = 3e-54
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 208 MEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGT----VTTNIPQAIEEFKKGKVEYR 263
++ +K+ + V L + + K G N+ + G++E+R
Sbjct: 14 VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFR 73
Query: 264 ADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 323
DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+
Sbjct: 74 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 133
Query: 324 NIK 326
N
Sbjct: 134 NPH 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 6e-06
Identities = 66/345 (19%), Positives = 104/345 (30%), Gaps = 117/345 (33%)
Query: 1 MATC---GTTPSSLMLTYAATPVHPQDLTPSLSLLSFKPSKTAAFSLCTNLSVRGGERRA 57
+ T G TP L H Q L ++ ++ + + S ++ R+A
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGL---VTAVAIAETDSWE-SFFVSV------RKA 299
Query: 58 SKWL--------DLYPLR-----------QNKNGLPGHMLAAASAVEADTDLATDDVEDD 98
L + YP +N G+P ML ++ ++L + V+D
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML----SI---SNLTQEQVQDY 352
Query: 99 TQGGTEGATATATATIS----------TKP-----------KKGKAALPLKRDRMSSTKF 137
A IS + P +K KA P D+ S F
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA--PSGLDQ-SRIPF 409
Query: 138 TETAEAHFRLNIDPKYNDQQLRATVSLP------KGTGKSVKVAVLAQGEKFNEAK---- 187
+E R K++++ L V+ P + ++ FN
Sbjct: 410 SE------RK---LKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 188 ----NAGADL-VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLG--KIL--GPRGLMPN 238
G+DL V + E+I D +I P IL GP G
Sbjct: 459 VYDTFDGSDLRVLSGSISERI------VDCIIRLPVKWETTTQFKATHILDFGPGGA--- 509
Query: 239 PKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 283
G +T K G TG+ I G D + DD
Sbjct: 510 SGLGVLTHRN-------KDG--------TGVRVIVAGTLDINPDD 539
Score = 28.1 bits (62), Expect = 5.7
Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 23/88 (26%)
Query: 16 AATPVHPQDLTPS--LSL----LSF-----KPSKTAAFSLCTNLSVRGGERRASKWLDLY 64
T D P+ L L + +PSK F NL + E Y
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-------Y 95
Query: 65 PLRQNKNGLPGHMLAAASAVEADTDLAT 92
L N H LAA E DT L
Sbjct: 96 -LEGNDI----HALAAKLLQENDTTLVK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 38/257 (14%), Positives = 69/257 (26%), Gaps = 63/257 (24%)
Query: 128 KRDRMSSTKFTETAEAHFRLNID----PKYND-------------QQLRAT--VSL--PK 166
R S E RL D KYN +LR V +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 167 GTGKSVKVAVLAQGEKFNEAKNAG------ADLVGGDDLIEQIKGGFMEFDK-LIASPDM 219
G+GK+ + K + + + ++E ++ + D + D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 220 M----VKVASLGKILGPRGLM---PNPKAGTVTTNI--PQAIEEFKKG-KV--------- 260
+++ S+ L R L+ P V N+ +A F K+
Sbjct: 220 SSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 261 -----EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANK-PKGAKGVYWKSAYIC 314
+ H + D++ + L P+ +
Sbjct: 278 TDFLSAATTTHISLDHHSMT---LTPDEVK-SLLLKYLDCRPQDLPREVLTT---NPRRL 330
Query: 315 SSMGPSIRLNIKEMLDY 331
S + SIR + D
Sbjct: 331 SIIAESIR-DGLATWDN 346
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 31.0 bits (71), Expect = 0.49
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 150 DPKYNDQQ-----LRATVSLPKGTGKSVKVAVLAQG-----EKFNEAKNAGADLVGGDD 198
DP ++ +Q ++A + G K+A++ G G D V D
Sbjct: 5 DPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDS 63
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 28.2 bits (62), Expect = 3.4
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 261 EYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVY 307
Y + I HI DF DL + A V ++ + Y
Sbjct: 64 AYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTY 110
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.5 bits (64), Expect = 3.7
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 216 SPDMMVKVASLGKILGPRGLM----------------PNPKAGTVTTNIPQAIEEFKKGK 259
+ + + ++S+ + LG G++ + G VT E+F +G+
Sbjct: 260 NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGE 319
Query: 260 VEY 262
+++
Sbjct: 320 IDH 322
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 4.1
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 75 GHMLAAASAVEA 86
GH AA A
Sbjct: 1383 GHPKGAAGAWMM 1394
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 28.0 bits (63), Expect = 5.0
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 249 PQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 296
Q I+ + +V+ A ++ F + L + IE
Sbjct: 299 DQIIDMLRVEQVKIHAGPKFASYLTFSPS--EVKSLRTEYGDLELCIE 344
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 253 EEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKS 294
EEF +G G +++P+ S +FL V S
Sbjct: 42 EEFSQGHAC------GAINVPYMNRGASGMSKNTDFLEQVSS 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,010,559
Number of extensions: 307239
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 38
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)