RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019646
(337 letters)
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 202 bits (515), Expect = 7e-65
Identities = 102/196 (52%), Positives = 145/196 (73%), Gaps = 1/196 (0%)
Query: 132 MSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGA 191
+++ KF ET E H +L IDP+ +DQ +R TVSLP G GK V+V +A+GEK EA+ AGA
Sbjct: 28 LATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA 87
Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQ 250
D VGG+++I++I G+M+FD ++A+PD+M V S LG+ILGPRGL+PNPKAGTV NI +
Sbjct: 88 DYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGE 147
Query: 251 AIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKS 310
I E K G++E+R DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S
Sbjct: 148 IIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRS 207
Query: 311 AYICSSMGPSIRLNIK 326
Y+ ++MGPS+R+N
Sbjct: 208 VYVTTTMGPSVRINPH 223
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 147 bits (371), Expect = 2e-43
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 127 LKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNE 185
L + FT++ E ID K D +LR V LPK K+ +V V+ E+
Sbjct: 16 LSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEY 75
Query: 186 AKNAGADLVGGDDLIEQIKG-------GFMEFDKLIASPDM-MVKVASLGKILGPRGLMP 237
AK A +V + +++++G + + + + + + LG LGPRG P
Sbjct: 76 AKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFP 135
Query: 238 NPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEA 297
P T +I + I FK+ + D+ + + G D +DL N +A + +I
Sbjct: 136 TPL--PNTADISEYINRFKRSVLVKTKDQPQV-QVFIGTEDMKPEDLAENAIAVLNAI-- 190
Query: 298 NKPKGAKGVYWKSAYICSSMGPSIRL 323
+ K ++ Y+ ++MG ++++
Sbjct: 191 -ENKAKVETNLRNIYVKTTMGKAVKV 215
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 141 bits (356), Expect = 2e-41
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 13/208 (6%)
Query: 124 ALPLKRDRMSSTKFTETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEK 182
A+ R+ FT++ E L ID + + +++ V LP G GK K+AV+ G+
Sbjct: 9 AVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDL 68
Query: 183 FNEAKNAGADLVGGDDLIEQIK------GGFMEFDKLIASPDMMVKVAS-LGKILGPRGL 235
+A+ G ++ +++ E K D IA D+M + +G ILGPRG
Sbjct: 69 AKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGK 128
Query: 236 MPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSI 295
MP P NI +E KK V DK + G +++ ++ N A + +
Sbjct: 129 MPKPV--PANANIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQIVDNIEAVLNVV 185
Query: 296 EANKPKGAKGVYWKSAYICSSMGPSIRL 323
KG + K AY+ +MGP++++
Sbjct: 186 AKKYEKGLY--HIKDAYVKLTMGPAVKV 211
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 33.5 bits (75), Expect = 0.024
Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 16/185 (8%)
Query: 150 DPKYNDQQ-----LRATVSLPKGTGKSVKVAVLAQG-----EKFNEAKNAGADLVGGD-- 197
DP ++ +Q ++A + G K+A++ G G D V D
Sbjct: 5 DPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDST 64
Query: 198 --DLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEF 255
+ + + + A IL R L + T + I
Sbjct: 65 PQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNS--GSGTWTAVANGITYA 122
Query: 256 KKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICS 315
+ + G G + + A Y+ +A +
Sbjct: 123 ADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVA 182
Query: 316 SMGPS 320
S +
Sbjct: 183 STDQN 187
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 27.8 bits (60), Expect = 2.1
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 24/68 (35%)
Query: 125 LPLKRDRMSSTKFTETAEAHFRLNIDPKYNDQ-------QLRATVSLPKG-----TGKSV 172
LP+K AE +N DP + Q + +++ TG V
Sbjct: 1 LPVKE-----------AEDKLSIN-DPLFERQWHLVNPSFPGSDINVLDLWYNNITGAGV 48
Query: 173 KVAVLAQG 180
A++ G
Sbjct: 49 VAAIVDDG 56
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
domain from elongation factor-1 beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 25.0 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKI 229
D VG D L EQI F+ + S + VA+ KI
Sbjct: 62 DKVGTDMLEEQIT----AFEDYVQS----MDVAAFNKI 91
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF)
domain from elongation factor-1 beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 25.0 bits (55), Expect = 6.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 192 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKI 229
D V DDL + I+ E + + S +A++ K+
Sbjct: 61 DKVSLDDLQQSIE----EDEDHVQS----TDIAAMQKL 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0380 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,174,878
Number of extensions: 52961
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.1 bits)