BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019647
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 59/298 (19%)
Query: 22 SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
S+ +A+VT L N Y KG + L L++ +T LVV P V + R +LE+ V
Sbjct: 22 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 82 REIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
++ + D+ M + +KL W +YSK +++D D V NID LFD
Sbjct: 81 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
+ PD WP FN+G+FV++PS+
Sbjct: 141 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 166
Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
TY+ LL +Q LN +F I K +P +YNL ++ + ++
Sbjct: 167 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 226
Query: 254 -DKVKVVHYCAAGSKPWRFT-----------GEEENMQREDVKMLVKKWWDIYNDESL 299
KVVH+ KPW +T + NM + +L WW+I+ L
Sbjct: 227 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTNVL 280
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 59/298 (19%)
Query: 22 SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
S+ +A+VT L N Y KG + L L++ +T LVV P V + R +LE+ V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 82 REIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
++ + D+ M + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
TY+ LL +Q LN +F I K +P +YNL ++ + ++
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205
Query: 254 -DKVKVVHYCAAGSKPWRFT-----------GEEENMQREDVKMLVKKWWDIYNDESL 299
KVVH+ KPW +T + NM + +L WW+I+ L
Sbjct: 206 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTNVL 259
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 59/298 (19%)
Query: 22 SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
S+ +A+VT L N Y KG + L L++ +T LVV P V + R +LE+ V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 82 REIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
++ + D+ M + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
TY+ LL +Q LN +F I K +P +YNL ++ + ++
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPAFKVF 205
Query: 254 -DKVKVVHYCAAGSKPWRFT-----------GEEENMQREDVKMLVKKWWDIYNDESL 299
KVVH+ KPW +T + NM + +L WW+I+ L
Sbjct: 206 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTNVL 259
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 59/298 (19%)
Query: 22 SLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIV 81
S+ +A+VT L N Y KG + L L++ +T LVV P V + R +LE+ V
Sbjct: 1 SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 82 REIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLP 139
++ + D+ M + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 140 DGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIS 199
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 200 TYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL- 253
TY+ LL +Q LN +F I K +P +YNL ++ + ++
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205
Query: 254 -DKVKVVHYCAAGSKPWRFT-----------GEEENMQREDVKMLVKKWWDIYNDESL 299
KVVH+ KPW +T + NM + +L WW+I+ L
Sbjct: 206 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTNVL 259
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL + +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL + +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 120/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 53/298 (17%)
Query: 15 GLGAKPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNIL 74
GL + + + +A+VT L N Y KG + L L++ +T+ L V P V + R L
Sbjct: 13 GLVPRGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKAL 71
Query: 75 ESQGCIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENI 132
E V ++ + D+ M + +KL W +YSK +++D D V NI
Sbjct: 72 EIVFDEVITVDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANI 131
Query: 133 DHLFDLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMF 192
D LF+ + PD WP FN+G+F
Sbjct: 132 DDLFEREE-------------------------LSAAPDP-GWPD--------CFNSGVF 157
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRH 247
V++PS+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 158 VYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY 217
Query: 248 PENVEL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 218 LPAFKAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 274
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 119/294 (40%), Gaps = 53/294 (18%)
Query: 19 KPASLPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQG 78
+ + + +A+VT L N Y KG + L L++ +T+ L V P V + R LE
Sbjct: 3 RGSHMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 61
Query: 79 CIVREIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLF 136
V ++ + D+ M + +KL W +YSK +++D D V NID LF
Sbjct: 62 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 121
Query: 137 DLPDGYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEP 196
+ + PD WP FN+G+FV++P
Sbjct: 122 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 147
Query: 197 SISTYHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENV 251
S+ TY+ LL +Q LN +F I K +P +YNL ++ +
Sbjct: 148 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 207
Query: 252 EL--DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
+ KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 208 KAFGANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 260
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 53/290 (18%)
Query: 23 LPGRAYVTFLAGNGDYVKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVR 82
+ +A+VT L N Y KG + L L++ +T+ L V P V + R LE V
Sbjct: 1 MTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVI 59
Query: 83 EIEPVYPPDNQTQYAMAY--YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPD 140
++ + D+ M + +KL W +YSK +++D D V NID LF+ +
Sbjct: 60 TVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE 119
Query: 141 GYFYAVMDCFCEKTWSKTPQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSIST 200
PD WP FN+G+FV++PS+ T
Sbjct: 120 -------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVET 145
Query: 201 YHDLLETVKVTPPTTFAEQDFLNMYFKH-----IYKPIPLVYNLVLAMLWRHPENVEL-- 253
Y+ LL +Q LN +F I K +P +YNL ++ + +
Sbjct: 146 YNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFG 205
Query: 254 DKVKVVHYCAAGSKPWRFTGEEEN----MQREDVKM----LVKKWWDIYN 295
KVVH+ +KPW +T + + + D M + WWDI+
Sbjct: 206 ANAKVVHFLGQ-TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 254
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 102 VINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLF--DLPDGYFYAVMDCFCEKTWSKT 158
+ Y++L++ E++ + K++YLD D+ V +++ L+ DL D + A +D F E+ +
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER--QEG 138
Query: 159 PQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETV-----KVTPP 213
+ KIG GE YFNAG+ + HD+ + +
Sbjct: 139 YKQKIGXAD------------GE---YYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDV 183
Query: 214 TTFAEQDFLNMYFKH--IYKPIPLVY---NLVLAMLW---RHPENVELDK------VKVV 259
+ +QD LN FK Y + N W RH + + D+ V V
Sbjct: 184 XQYQDQDILNGLFKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVS 243
Query: 260 HYCAAGSKPW 269
HYC +KPW
Sbjct: 244 HYCGP-AKPW 252
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 40/190 (21%)
Query: 102 VINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLF--DLPDGYFYAVMDCFCEKTWSKT 158
+ Y++L++ E++ + K++YLD D+ V +++ L+ DL D + A +D F E+ +
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVER--QEG 138
Query: 159 PQYKIGYCQQCPDRVRWPAEMGEPPALYFNAGMFVFEPSISTYHDLLETV-----KVTPP 213
+ KIG GE YFNAG+ + HD+ + +
Sbjct: 139 YKQKIGMAD------------GE---YYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183
Query: 214 TTFAEQDFLNMYFK-------HIYKPIPLVYNLVLAMLW-RHPENVELDK------VKVV 259
+ ++D LN FK + +P Y + RH + + D+ V V
Sbjct: 184 MQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVS 243
Query: 260 HYCAAGSKPW 269
HYC +KPW
Sbjct: 244 HYCGP-AKPW 252
>pdb|3HS8|A Chain A, Intersectin 1-Peptide-Ap2 Alpha Ear Complex
Length = 273
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 KVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAA 264
K PT A QDF + K + P V N+ A +HP + E+ K K++ + +A
Sbjct: 159 KFFQPTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSA 210
>pdb|1QTP|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
Length = 247
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 KVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAA 264
K PT A QDF + K + P V N+ A +HP + E+ K K++ + +A
Sbjct: 133 KFFQPTEXASQDFFQRW-KQLSNPQQEVQNIFKA---KHPXDTEITKAKIIGFGSA 184
>pdb|1QTS|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
pdb|1KY6|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KY7|A Chain A, The Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Amphiphysin Fxdxf
pdb|1KYD|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KYU|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
pdb|1KYF|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
Length = 247
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 KVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAA 264
K PT A QDF + K + P V N+ A +HP + E+ K K++ + +A
Sbjct: 133 KFFQPTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSA 184
>pdb|1W80|A Chain A, Crystal Structure Of The Alpha-adaptin Appendage Domain,
From The Ap2 Adaptor Complex, Bound To 2 Peptides From
Synaptojanin170
pdb|2VJ0|A Chain A, Crystal Structure Of The Alpha-Adaptin Appendage Domain,
From The Ap2 Adaptor Complex, In Complex With An Fxdnf
Peptide From Amphiphysin1 And A Wvxf Peptide From
Synaptojanin P170
Length = 250
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 213 PTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAA 264
PT A QDF + K + P V N+ A +HP + E+ K K++ + +A
Sbjct: 140 PTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSA 187
>pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
Length = 238
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 209 KVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVELDKVKVVHYCAA 264
K PT A QDF + K + P V N+ A +HP + E+ K K++ + +A
Sbjct: 124 KFFQPTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSA 175
>pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 193 VFEPSISTYHDLLETVKVTPPTTFAEQDFLNMYFKHIYKPIPLVYNLVLAMLWRHPENVE 252
V E + +H LL T + +N Y+K + +P+ LV L A L+ V
Sbjct: 24 VLESEVKKFH-LLATFEECKALAADTARRMNEYYKDVAEPVTLVALLTGAYLYASLLTVH 82
Query: 253 LDKVKVVHYCAAGSKPWRFTGEEENM-QREDVKMLVKKWWDIYNDESLD 300
L +H+ S ++ T +E + ED+K L +K + DE +D
Sbjct: 83 LTFPYTLHFVKVSS--YKGTRQESVVFDEEDLKQLKEKREVVLIDEYVD 129
>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|K Chain K, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|K Chain K, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|K Chain K, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|K Chain K, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|K Chain K, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|K Chain K, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|K Chain K, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|K Chain K, The Structure Of The Transition State Analogue "daa"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ5|K Chain K, The Structure Of The Transition State Analogue "raa"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ6|K Chain K, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|K Chain K, The Structure Of The Transition State Analogue "dca"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQ8|K Chain K, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|K Chain K, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|K Chain K, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|K Chain K, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|K Chain K, The Structure Of The Transition State Analogue "dan"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQN|K Chain K, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To
The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|K Chain K, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|K Chain K, The Structure Of The Transition State Analogue "rap"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|2OTJ|K Chain K, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|K Chain K, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|K Chain K, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|2QEX|K Chain K, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
Length = 132
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 39 VKGVVGLAKGLRKVKTAYPLVVAVLPDVPEEHRNILESQGCIVREIEPVYPPDN 92
V G G L K + V+V PE R +LE+ +VR+ +P+ PD
Sbjct: 34 VHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEA--VVVRQRKPIRRPDG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,210,157
Number of Sequences: 62578
Number of extensions: 504503
Number of successful extensions: 944
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 38
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)