BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019648
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/331 (61%), Positives = 259/331 (78%), Gaps = 13/331 (3%)
Query: 1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
MASRKLVRDL +++Q P QL + RL L+ NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59
Query: 61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
+SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ GVW EAES KKVS+S+
Sbjct: 60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119
Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
K+K SAATEEVK +F+ G +++ G + GE++Q+Q+ S++ +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAES---ASSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176
Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
SSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFH-----KPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231
Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
T++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291
Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
PIVHKIQDMNE IF+ET +A++ KEIRRRDP
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDP 322
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 360 bits (925), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 12/333 (3%)
Query: 1 MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
MA RK++RDL +++Q P QL + ++ R + A GY+S+R+FSVF EFSK I+G
Sbjct: 1 MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59
Query: 59 EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES KKVS+
Sbjct: 60 EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119
Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
S+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+ S++ TF+ K
Sbjct: 120 SVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAK 174
Query: 179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234
Query: 239 TRTDLVVTPSKKS----MWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETS 294
RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETS
Sbjct: 235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETS 294
Query: 295 DNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
DNPIVHKIQDMNE +ETD+A++ KEIR RDP
Sbjct: 295 DNPIVHKIQDMNEKFLKETDSASTYKEIRSRDP 327
>sp|B4U237|UXAC_STREM Uronate isomerase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uxaC PE=3 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|C0MA32|UXAC_STRE4 Uronate isomerase OS=Streptococcus equi subsp. equi (strain 4047)
GN=uxaC PE=3 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|B9DSL9|UXAC_STRU0 Uronate isomerase OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=uxaC PE=3 SV=1
Length = 467
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S Q FK F++ ++ + NP + S ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASQLDKFKAFARTLQ-RSYGNPVYHWSAMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ G++E L T++ E++Y +++ +E + + +K+ A K T+
Sbjct: 109 -VFGIEEVL---TEENAEEIYNRLNTYLLENKVSPRKLIADSKVTFIGTTDH 156
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|B2TS45|MUTS2_CLOBB MutS2 protein OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=mutS2 PE=3 SV=1
Length = 785
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 16 RPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG-EAESNPEFKHSVKEL- 73
RP + L + G S N + +++ + KE K ++ N EF+ ++ L
Sbjct: 473 RPTYRLLIGVPGKS--------NAFEISKRIGLGKEVIDCAKNYMSKENLEFEGLIRNLQ 524
Query: 74 ------KKKAEEIKGVKEE---LKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122
KK A + K +K+E LK++ +Q E+L K D +MEA KK+ A+ K+
Sbjct: 525 EKSIIAKKDARDAKVIKDEADNLKKKYEQKLERLEKVKDKAYMEAREEAKKIVANAKD 582
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 209 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 268
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 269 ITGISEPVVTKGQE 282
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,728,122
Number of Sequences: 539616
Number of extensions: 4998825
Number of successful extensions: 24647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 627
Number of HSP's that attempted gapping in prelim test: 23258
Number of HSP's gapped (non-prelim): 1586
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)