Query 019648
Match_columns 337
No_of_seqs 108 out of 122
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2580 Mitochondrial import i 100.0 1.5E-50 3.3E-55 398.8 15.4 268 26-336 41-321 (459)
2 TIGR00984 3a0801s03tim44 mitoc 100.0 1.8E-40 3.9E-45 326.4 9.9 224 54-336 1-247 (378)
3 PF07464 ApoLp-III: Apolipopho 91.8 0.2 4.4E-06 45.0 3.9 37 49-88 43-80 (155)
4 KOG2580 Mitochondrial import i 87.2 0.48 1E-05 48.9 3.0 80 47-139 67-149 (459)
5 PF05957 DUF883: Bacterial pro 64.3 74 0.0016 25.6 9.0 66 65-133 2-67 (94)
6 COG1510 Predicted transcriptio 50.1 70 0.0015 29.9 7.2 64 51-130 97-160 (177)
7 PRK00409 recombination and DNA 47.9 1.4E+02 0.0031 33.2 10.4 17 44-60 495-511 (782)
8 TIGR01069 mutS2 MutS2 family p 46.3 1.6E+02 0.0035 32.8 10.5 16 44-59 490-505 (771)
9 PRK01919 tatB sec-independent 46.0 68 0.0015 29.7 6.4 17 46-62 36-52 (169)
10 KOG2391 Vacuolar sorting prote 44.8 1E+02 0.0022 31.7 7.9 68 47-133 210-285 (365)
11 PLN03229 acetyl-coenzyme A car 42.1 91 0.002 34.9 7.7 31 48-78 508-545 (762)
12 PF12732 YtxH: YtxH-like prote 41.9 1.4E+02 0.0031 23.0 6.8 11 117-127 61-71 (74)
13 COG0711 AtpF F0F1-type ATP syn 40.3 2.7E+02 0.0058 24.8 11.1 91 45-135 31-122 (161)
14 PF12732 YtxH: YtxH-like prote 36.8 1.2E+02 0.0026 23.4 5.7 17 118-134 51-67 (74)
15 PF14372 DUF4413: Domain of un 33.0 11 0.00025 30.9 -0.6 24 274-299 10-33 (101)
16 TIGR01069 mutS2 MutS2 family p 29.2 3.9E+02 0.0085 29.8 10.1 34 49-82 513-546 (771)
17 TIGR01477 RIFIN variant surfac 25.2 1.6E+02 0.0036 30.1 5.9 55 59-126 53-108 (353)
18 PTZ00046 rifin; Provisional 25.0 1.8E+02 0.004 29.8 6.2 54 60-126 51-105 (358)
19 PF10146 zf-C4H2: Zinc finger- 21.0 7.4E+02 0.016 23.7 10.8 67 49-120 13-83 (230)
20 PRK13428 F0F1 ATP synthase sub 20.9 9.5E+02 0.021 24.9 11.1 30 47-76 28-57 (445)
21 PF05010 TACC: Transforming ac 20.6 7.3E+02 0.016 23.5 10.9 72 61-132 110-185 (207)
22 COG1422 Predicted membrane pro 20.5 1.7E+02 0.0037 27.8 4.6 38 46-83 57-94 (201)
23 COG4980 GvpP Gas vesicle prote 20.4 3.3E+02 0.0071 23.8 6.0 11 120-130 77-87 (115)
24 PF07083 DUF1351: Protein of u 20.3 7.1E+02 0.015 23.2 9.8 82 49-134 17-101 (215)
No 1
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-50 Score=398.84 Aligned_cols=268 Identities=27% Similarity=0.418 Sum_probs=229.9
Q ss_pred cCcccccccccccCCC-CCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 019648 26 QGSSTRLRLVSANGYS-SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG 104 (337)
Q Consensus 26 ~~~~~~~~~~~~~~ys-~~rr~gffs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~ 104 (337)
+++..|+.+.+.++|| ++||+|||++|+||||+||+||||||+|||+|++++++|++| |+|| .||++|..+
T Consensus 41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~-- 112 (459)
T KOG2580|consen 41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA-- 112 (459)
T ss_pred hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence 4688999999999999 589999999999999999999999999999999999999997 9998 499999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccCCCccccccccCcc-hhhh-hhccccchhhhhhhccccc
Q 019648 105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSG-EEKQ-KQTVSSDTAETFYGKLKSS 182 (337)
Q Consensus 105 v~~eae~~a~Kvs~~vKeKi~~~~e~vke~~~~~kee~s~~td~~~e~gkk~~~~-ee~~-~a~~s~~~aes~~~k~kst 182 (337)
+++++++|..++.+++++.+.|+... +|+++ +++ |++.+++ ++.+ +|.++++.-+++|+||++|
T Consensus 113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~e-S~~----~k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T 178 (459)
T KOG2580|consen 113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWE-SAL----GKKTKEAVEEAQKQASGSAEEVDTFFEKVGQT 178 (459)
T ss_pred -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHh-hhh----hccchhhHHHHHHHhhcchhhhhHhhhhhhhh
Confidence 58899999999999998888777666 89998 666 8888876 4444 7999999999999999988
Q ss_pred cCCccchHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcccccCCCCCCCCCCC-CCccceeEEecC--ccchhHHHHHh
Q 019648 183 ISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGE-KSTRTDLVVTPS--KKSMWSKLKEK 259 (337)
Q Consensus 183 is~~k~s~af~~l~~a~~~~~~skg~~~VkeEl~~~p~~rKr~~~~~~~~~~~e-~s~~T~lVl~~~--k~s~W~kfkek 259 (337)
...+.+|..|..|++ -.|.++.|..+|++++...|++.++.+..+++++++| |.++++||+|++ ..++|++|||+
T Consensus 179 ~~yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~a~~vv~h~~skw~~kwe~fkek 256 (459)
T KOG2580|consen 179 AAYKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEEAEGVVLHKDSKWYQKWEDFKEK 256 (459)
T ss_pred hhHHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcceeeEEeccchHHHHHHHHHHhc
Confidence 888888888887763 6777777777888877777777777777777788997 666899999843 22445559998
Q ss_pred ccCCcchhhhcccCccccchhhhhhHHHHHHHhhcCchhh-------HhhhhccccccccchHHHHHHHHHhcCCCCccc
Q 019648 260 MQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPYDHVF 332 (337)
Q Consensus 260 ~~~~Pv~k~l~~~~n~v~~K~~e~~edlke~wEeSDNP~V-------~kI~dv~~~lF~ETE~a~v~rEIr~~DPsF~~~ 332 (337)
|.||++++ +|+..||+||||+| ++|.++++|||++||+++||+||++|||+| +.
T Consensus 257 --------------~~~~~k~~----~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF-~~ 317 (459)
T KOG2580|consen 257 --------------NVVVRKFQ----ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSF-DK 317 (459)
T ss_pred --------------ccchHHHH----HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCC-Cc
Confidence 78888887 99999999999999 688888889999999999999999999999 66
Q ss_pred cccC
Q 019648 333 FDFC 336 (337)
Q Consensus 333 ~~F~ 336 (337)
.+|+
T Consensus 318 ~~Fl 321 (459)
T KOG2580|consen 318 EDFL 321 (459)
T ss_pred HHHH
Confidence 6654
No 2
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=100.00 E-value=1.8e-40 Score=326.38 Aligned_cols=224 Identities=18% Similarity=0.285 Sum_probs=177.9
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 019648 54 KKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG 133 (337)
Q Consensus 54 ~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~vke 133 (337)
||||+|+.||+|||+|||+|++++.+|++| |||| .||++|+.++ +++.++|..+++.|..+.+.|.+
T Consensus 1 d~~k~E~~kskE~~enik~l~~~~~~~~es-ea~k-----~ar~~y~~~~-------~~~~~~s~~~~~~l~~~~~~v~~ 67 (378)
T TIGR00984 1 DTFRDELQKSQELQESIKQLQDRSGKLNES-DALK-----KARKAYEKAE-------SGTLKSSEVVGKTLGKLGDTMKK 67 (378)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHhhhhhh-HHHH-----HHHHHHHHHh-------cccchhhHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999996 9998 5999999994 77889999999999999999998
Q ss_pred hccCCCCCccccCCCccccccccCcchhhh-hhccccchhhhhhhccccccCCccchHHHHHHHHHHHHHHhhhhhhhhh
Q 019648 134 TFRTGSTDTSAKHDDDVRDGFKASSGEEKQ-KQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVK 212 (337)
Q Consensus 134 ~~~~~kee~s~~td~~~e~gkk~~~~ee~~-~a~~s~~~aes~~~k~kstis~~k~s~af~~l~~a~~~~~~skg~~~Vk 212 (337)
.. .++.+ ++. ||+.+.+ .. .++++ |+. .+.+|+.|++|.+++.++++++.+|
T Consensus 68 ~~----~~~~~-s~~----~k~~~~~--~~~ta~~~---~~~-------------~~~~~~~v~~T~~yk~vs~~~~~~k 120 (378)
T TIGR00984 68 MA----HKAWE-SEL----GKKMKKA--GAETAKTA---AEH-------------VDKSAEPVRDTAVYKHVSQSMKDGK 120 (378)
T ss_pred HH----HHHhh-cHH----HHHHHHH--HHHHhhhh---hhh-------------HHHhcccccccHHHHHHHHHHHhhh
Confidence 87 67775 555 6664322 11 22222 233 5889999999999999999999999
Q ss_pred hhccC----------CC-CcccccCCCC-CCCCCC-CCCccceeEEecC--ccchhHHHHHhccCCcchhhhcccCcccc
Q 019648 213 DELSG----------SP-SKRKHLEYTP-SPSWTG-EKSTRTDLVVTPS--KKSMWSKLKEKMQGYPVFKRITGISEPVV 277 (337)
Q Consensus 213 eEl~~----------~p-~~rKr~~~~~-~~~~~~-e~s~~T~lVl~~~--k~s~W~kfkek~~~~Pv~k~l~~~~n~v~ 277 (337)
++++. .| .+|+|.+..+ ...+++ +|+++|+|+||++ ..++|+.||++ +|++++|+
T Consensus 121 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~n~~a~~v~~~k~s~~~~~w~~fk~~---~~~~~~~~------- 190 (378)
T TIGR00984 121 DSSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDVVLHSDSSWYSKVEDFKES---NVVYRKIQ------- 190 (378)
T ss_pred cccccccccchhhhhhHHHhhhhhcccccccccccccCCcccceEEecccHHHHHHHHHHhh---CHHHHHHH-------
Confidence 98885 12 2466655443 234566 4788999999943 23555669997 56666655
Q ss_pred chhhhhhHHHHHHHhhcCchhhHhhhh-------ccccccccchHHHHHHHHHhcCCCCccccccC
Q 019648 278 TKGQEIAEDVRERWETSDNPIVHKIQD-------MNETIFQETDAAASIKEIRRRDPYDHVFFDFC 336 (337)
Q Consensus 278 ~K~~e~~edlke~wEeSDNP~V~kI~d-------v~~~lF~ETE~a~v~rEIr~~DPsF~~~~~F~ 336 (337)
|||++|||||||||+.+|+ ++++||+||++|.+|++|+++||+| +..+|+
T Consensus 191 --------~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsF-d~~~Fl 247 (378)
T TIGR00984 191 --------ELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTF-DKEHFL 247 (378)
T ss_pred --------HHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCC-CHHHHH
Confidence 9999999999999975554 5667999999999999999999999 777774
No 3
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=91.79 E-value=0.2 Score=45.00 Aligned_cols=37 Identities=30% Similarity=0.557 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhh-ChhhHHHHHHHHHHHHHHhhhHHHHH
Q 019648 49 FKEFSKKIKGEAES-NPEFKHSVKELKKKAEEIKGVKEELK 88 (337)
Q Consensus 49 fs~f~~niK~E~~K-NkEmkesiKkfreea~kLe~s~eaLK 88 (337)
++.++.+|.+|+.+ ||++.+.++.|+.+ |++.-+.|+
T Consensus 43 l~~~~~~l~eeik~~n~~~~e~l~~~~~k---l~et~~~L~ 80 (155)
T PF07464_consen 43 LQNVSSSLQEEIKDANPEAEEALKQLKTK---LEETAEKLR 80 (155)
T ss_dssp HHHHHHHHHHHHTT-SSTHHHHHHHHHHH---HHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHH---HHHHHHHHH
Confidence 56788999999999 99999999999887 555544554
No 4
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=0.48 Score=48.94 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=52.7
Q ss_pred chHHHHHHHHH--HHhhhC-hhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 019648 47 SVFKEFSKKIK--GEAESN-PEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEK 123 (337)
Q Consensus 47 gffs~f~~niK--~E~~KN-kEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeK 123 (337)
+|+-+|-.-+. .|++.| ++||+...+|.| -..|+.+-+ |+++.+.|.+..+ ..+++.++-++++
T Consensus 67 ~f~dn~r~E~~knkElqe~iK~lkd~a~~L~e-sda~kkaR~------k~~~~e~~t~~~s------~~~kk~~~e~~e~ 133 (459)
T KOG2580|consen 67 EFSDNVRAELDKNKELQESIKKLKDRAGELEE-SDALKKART------KYETAESETQASS------EVLKKKLGELKET 133 (459)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhcc-chHHHHHHH------HHHHHHhhhhhhh------HHHHHHHHHHHHH
Confidence 45554444333 455554 688888888844 455655432 3468888888874 5566666778888
Q ss_pred HHHHHHHhhhhccCCC
Q 019648 124 ISAATEEVKGTFRTGS 139 (337)
Q Consensus 124 i~~~~e~vke~~~~~k 139 (337)
|....+++.++..+++
T Consensus 134 ~k~~~~ea~eS~~~k~ 149 (459)
T KOG2580|consen 134 VKLGAEEAWESALGKK 149 (459)
T ss_pred HHHHHHHHHhhhhhcc
Confidence 8888888888864444
No 5
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.30 E-value=74 Score=25.55 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 019648 65 EFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG 133 (337)
Q Consensus 65 EmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~vke 133 (337)
++++.|..++..++.|-. .+.......++++...+...-..+........+.++++...+.+.+.+
T Consensus 2 ~l~~~l~~l~~d~~~l~~---~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 67 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLAR---SAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTED 67 (94)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777655543 344444455666666665444444444444455555555555544443
No 6
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=50.08 E-value=70 Score=29.86 Aligned_cols=64 Identities=27% Similarity=0.280 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 019648 51 EFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130 (337)
Q Consensus 51 ~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~ 130 (337)
-|-++++.|+++|+| .++++-++..+..+. +.|..+.++.+.++.... +.++.+.+=+..+.+-
T Consensus 97 ~f~ek~~ReId~t~e---~l~k~~~e~~~~~~~-~~~~~~~ke~~~~l~~~l------------~~~~~~~~ll~~l~e~ 160 (177)
T COG1510 97 LFEEKWKREIDPTKE---ALKKLLEELNEDLDD-RDLTERIKEIKSKLERLL------------KWSEDYYELLTRLLEF 160 (177)
T ss_pred HHHHHHHHHhhhHHH---HHHHHHHHccccccc-hhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 355889999999976 578888888888884 788887766665555443 4444555555444443
No 7
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.94 E-value=1.4e+02 Score=33.18 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=10.0
Q ss_pred CCcchHHHHHHHHHHHh
Q 019648 44 RQFSVFKEFSKKIKGEA 60 (337)
Q Consensus 44 rr~gffs~f~~niK~E~ 60 (337)
++.|+=.++++.-++-+
T Consensus 495 ~~~Glp~~ii~~A~~~~ 511 (782)
T PRK00409 495 KRLGLPENIIEEAKKLI 511 (782)
T ss_pred HHhCcCHHHHHHHHHHH
Confidence 56666666666555544
No 8
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.31 E-value=1.6e+02 Score=32.76 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=7.6
Q ss_pred CCcchHHHHHHHHHHH
Q 019648 44 RQFSVFKEFSKKIKGE 59 (337)
Q Consensus 44 rr~gffs~f~~niK~E 59 (337)
++.|+=.++++.-+.=
T Consensus 490 ~~~Glp~~ii~~A~~~ 505 (771)
T TIGR01069 490 QRYGIPHFIIEQAKTF 505 (771)
T ss_pred HHhCcCHHHHHHHHHH
Confidence 4555545555444433
No 9
>PRK01919 tatB sec-independent translocase; Provisional
Probab=46.02 E-value=68 Score=29.72 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=10.2
Q ss_pred cchHHHHHHHHHHHhhh
Q 019648 46 FSVFKEFSKKIKGEAES 62 (337)
Q Consensus 46 ~gffs~f~~niK~E~~K 62 (337)
.|=|..+++++|+|++.
T Consensus 36 i~k~Rr~~~d~K~ev~~ 52 (169)
T PRK01919 36 FGRAQRYINDVKAEVSR 52 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666666653
No 10
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.76 E-value=1e+02 Score=31.65 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=42.8
Q ss_pred chHHHHHHHH----HHHhhhChhhHHHHHHHHHHHHH----HhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 019648 47 SVFKEFSKKI----KGEAESNPEFKHSVKELKKKAEE----IKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118 (337)
Q Consensus 47 gffs~f~~ni----K~E~~KNkEmkesiKkfreea~k----Le~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~ 118 (337)
++.+-..++| ++||+.+--+|++||.+.|+..+ |+...++|.+ .. ..-++-.+
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEq-----------q~--------~~L~~niD 270 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQ-----------QL--------QSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH-----------HH--------HHHHhhhH
Confidence 4666666665 57999999999999999888432 2222222221 11 12244455
Q ss_pred HHHHHHHHHHHHhhh
Q 019648 119 SMKEKISAATEEVKG 133 (337)
Q Consensus 119 ~vKeKi~~~~e~vke 133 (337)
+++.|+.++.++++.
T Consensus 271 IL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 271 ILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHhhhcc
Confidence 688888887777665
No 11
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.14 E-value=91 Score=34.92 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHhhhC-------hhhHHHHHHHHHHHH
Q 019648 48 VFKEFSKKIKGEAESN-------PEFKHSVKELKKKAE 78 (337)
Q Consensus 48 ffs~f~~niK~E~~KN-------kEmkesiKkfreea~ 78 (337)
++++=+++||+|++++ |++|+-+..|+++-+
T Consensus 508 ~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 508 VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 3555577788887775 677777777777654
No 12
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=41.85 E-value=1.4e+02 Score=23.00 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 019648 117 SASMKEKISAA 127 (337)
Q Consensus 117 s~~vKeKi~~~ 127 (337)
++.+++++.++
T Consensus 61 ~~~~~e~~~e~ 71 (74)
T PF12732_consen 61 ADEAKEKAKEL 71 (74)
T ss_pred HHHHHHHHHHh
Confidence 33344444443
No 13
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=40.30 E-value=2.7e+02 Score=24.78 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHHHhhhChhhHHHHHHHHHHH-HHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 019648 45 QFSVFKEFSKKIKGEAESNPEFKHSVKELKKKA-EEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEK 123 (337)
Q Consensus 45 r~gffs~f~~niK~E~~KNkEmkesiKkfreea-~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeK 123 (337)
=.++|.+--++|.+++..-...++-...+.++. ++|++...--..-..+.-++.....+.+..+|+.++....+.-+..
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~ 110 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAE 110 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999988777755444433222 2222221000000111222333444444556666666666666666
Q ss_pred HHHHHHHhhhhc
Q 019648 124 ISAATEEVKGTF 135 (337)
Q Consensus 124 i~~~~e~vke~~ 135 (337)
|....+.+.+.+
T Consensus 111 I~~e~~~a~~~l 122 (161)
T COG0711 111 IEAEKERALEEL 122 (161)
T ss_pred HHHHHHHHHHHH
Confidence 665555555443
No 14
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.79 E-value=1.2e+02 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 019648 118 ASMKEKISAATEEVKGT 134 (337)
Q Consensus 118 ~~vKeKi~~~~e~vke~ 134 (337)
+.+++++..+++++++.
T Consensus 51 ~~~k~~~~~~~~~~~e~ 67 (74)
T PF12732_consen 51 EKVKEKAEETADEAKEK 67 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33555555555555543
No 15
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=33.00 E-value=11 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=12.9
Q ss_pred ccccchhhhhhHHHHHHHhhcCchhh
Q 019648 274 EPVVTKGQEIAEDVRERWETSDNPIV 299 (337)
Q Consensus 274 n~v~~K~~e~~edlke~wEeSDNP~V 299 (337)
|-+++.+-+|..-+++ |. +++|++
T Consensus 10 n~~f~~i~~i~~~l~~-~~-~~d~~l 33 (101)
T PF14372_consen 10 NLYFHEIWKIKDLLRD-WN-NDDPDL 33 (101)
T ss_pred HHHHHHHHHHHHHHHH-hc-cCCHHH
Confidence 3344555555555555 55 555655
No 16
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.15 E-value=3.9e+02 Score=29.83 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhh
Q 019648 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKG 82 (337)
Q Consensus 49 fs~f~~niK~E~~KNkEmkesiKkfreea~kLe~ 82 (337)
+++++.+|-.+-....+.++.+.+.+++++++++
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~ 546 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKK 546 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555555555555555444433
No 17
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.22 E-value=1.6e+02 Score=30.14 Aligned_cols=55 Identities=18% Similarity=0.438 Sum_probs=37.8
Q ss_pred HhhhChhhHHHHHHHHH-HHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 019648 59 EAESNPEFKHSVKELKK-KAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISA 126 (337)
Q Consensus 59 E~~KNkEmkesiKkfre-ea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~ 126 (337)
-.+.+||||+=++.|.. ..|+|++-.|-++. .||++|-== ..+-+|+ .+|+||..
T Consensus 53 nYDNDPeMK~Vm~nF~rqTsQRF~EYdERM~~-----kRqKcKeqC------DKeIQKI--ILKDKiEK 108 (353)
T TIGR01477 53 NYDNDPEMKSVMEQFDRQTSQRFEEYDERMQE-----KRQKCKEQC------DKEIQKI--ILKDKLEK 108 (353)
T ss_pred cCCCcHHHHHHHHHHhHHHHHHHHhHHHHHHH-----hhhhhHHhh------chHHHHH--HHHHHHHH
Confidence 46789999999999954 56789887666664 666665321 2344444 58888875
No 18
>PTZ00046 rifin; Provisional
Probab=25.00 E-value=1.8e+02 Score=29.85 Aligned_cols=54 Identities=20% Similarity=0.446 Sum_probs=37.2
Q ss_pred hhhChhhHHHHHHHHH-HHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 019648 60 AESNPEFKHSVKELKK-KAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISA 126 (337)
Q Consensus 60 ~~KNkEmkesiKkfre-ea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~ 126 (337)
.+.+||||+=+..|.. ..|+|++-.|-++. .||++|-== ..+-+|+ .+|+||..
T Consensus 51 YDNDPeMK~Vme~F~rqTsQRF~EYdERM~~-----kRqkcKeqC------DKeIQKI--ILKDKlEK 105 (358)
T PTZ00046 51 YDNDPEMKSVMENFDRQTSQRFEEYDERMKE-----KRQKCKEQC------DKEIQKI--ILKDKLEK 105 (358)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHhh------chHHHHH--HHHHHHHH
Confidence 4679999999999954 56789988777764 566665321 2334444 58888876
No 19
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.97 E-value=7.4e+02 Score=23.72 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhH----HHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 019648 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVK----EELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120 (337)
Q Consensus 49 fs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~----eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~v 120 (337)
|..+...|.+|++.=..--..|.++++|.+.|.+=. |.|+ ..-+=+..++.++++++++-.+.-+.+
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLr-----qI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELR-----QINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777776666688889999888887622 3443 355567888888888887766655553
No 20
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.86 E-value=9.5e+02 Score=24.92 Aligned_cols=30 Identities=3% Similarity=0.112 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 019648 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 47 gffs~f~~niK~E~~KNkEmkesiKkfree 76 (337)
+++.+=-+.|.++++.-.+.++...+.+++
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~ 57 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQA 57 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456777777666666666666555
No 21
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=20.60 E-value=7.3e+02 Score=23.49 Aligned_cols=72 Identities=18% Similarity=0.327 Sum_probs=49.4
Q ss_pred hhChh-hHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH---HHHHHHHHhh
Q 019648 61 ESNPE-FKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE---KISAATEEVK 132 (337)
Q Consensus 61 ~KNkE-mkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKe---Ki~~~~e~vk 132 (337)
.+|.| +++.+.+..+...+.++-=++||.-..+.-..+-+.++.|+..+.+++..+...||. ++.++.+.+.
T Consensus 110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34543 456666666666666665678887665666667777888889989889888888776 5555554443
No 22
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.49 E-value=1.7e+02 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhh
Q 019648 46 FSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGV 83 (337)
Q Consensus 46 ~gffs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s 83 (337)
-|++..++...==..++=+++|+-+++|+++-++...+
T Consensus 57 ~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 57 TGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777667778888999999999887776664
No 23
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=20.38 E-value=3.3e+02 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 019648 120 MKEKISAATEE 130 (337)
Q Consensus 120 vKeKi~~~~e~ 130 (337)
|++.|.+..++
T Consensus 77 ik~~v~~~~e~ 87 (115)
T COG4980 77 IKESVKKWKED 87 (115)
T ss_pred HHHHHHHhHhh
Confidence 44444444333
No 24
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.31 E-value=7.1e+02 Score=23.24 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhChhh---HHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 019648 49 FKEFSKKIKGEAESNPEF---KHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKIS 125 (337)
Q Consensus 49 fs~f~~niK~E~~KNkEm---kesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~ 125 (337)
|.+|-.+|..=+++-.-+ -+|++.-+.....|.....+|-.++|+--++.-+-++ +.+...+.+...|++-++
T Consensus 17 ~e~lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~----~Fe~~~K~l~~~i~~~~~ 92 (215)
T PF07083_consen 17 FEELKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIK----EFEAKIKELIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHH
Confidence 445555665555555433 3778888888888888888998877775555544443 335666666666776666
Q ss_pred HHHHHhhhh
Q 019648 126 AATEEVKGT 134 (337)
Q Consensus 126 ~~~e~vke~ 134 (337)
.+.+.|++-
T Consensus 93 ~I~~~ik~~ 101 (215)
T PF07083_consen 93 KIDEQIKEF 101 (215)
T ss_pred HHHHHHHHH
Confidence 666666654
Done!