Query 019648
Match_columns 337
No_of_seqs 108 out of 122
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk9_A Mitochondrial import in 99.7 3.1E-18 1.1E-22 157.5 -0.4 69 249-336 9-81 (222)
2 2cw9_A Translocase of inner mi 97.4 3.2E-05 1.1E-09 68.9 1.1 31 299-329 22-52 (194)
3 1rh1_A Colicin B; FEPA, cytoto 45.2 94 0.0032 31.7 9.4 72 73-184 310-381 (511)
4 3he4_B Synzip5; heterodimeric 37.8 38 0.0013 23.6 3.8 26 64-89 6-31 (46)
5 3oja_B Anopheles plasmodium-re 31.0 1.8E+02 0.006 28.5 8.8 16 120-135 563-578 (597)
6 3s84_A Apolipoprotein A-IV; fo 30.8 1.8E+02 0.006 26.9 8.4 46 85-130 179-224 (273)
7 1nfn_A Apolipoprotein E3; lipi 29.2 47 0.0016 29.2 4.0 35 49-92 93-127 (191)
8 2kfe_A Meucin-24; alpha-helix, 28.9 50 0.0017 21.0 2.9 19 116-134 6-24 (26)
9 1j1v_A Chromosomal replication 25.5 48 0.0017 25.9 3.0 37 40-76 55-91 (94)
10 1oeg_A Apolipoprotein E; siali 24.2 22 0.00077 22.6 0.7 19 283-305 2-20 (26)
11 3pvv_A Chromosomal replication 22.0 70 0.0024 25.5 3.4 36 40-76 59-94 (101)
No 1
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=99.67 E-value=3.1e-18 Score=157.51 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=37.3
Q ss_pred ccchhHHHHHhccCCcchhhhcccCccccchhhhhhHHHHHH-HhhcCchhhHhhhhccc---cccccchHHHHHHHHHh
Q 019648 249 KKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNE---TIFQETDAAASIKEIRR 324 (337)
Q Consensus 249 k~s~W~kfkek~~~~Pv~k~l~~~~n~v~~K~~e~~edlke~-wEeSDNP~V~kI~dv~~---~lF~ETE~a~v~rEIr~ 324 (337)
...+|.+||++ ||++++|+ |||++ |||||||+|+++++|+| |||++||++.+|++|++
T Consensus 9 ~~~~w~~fk~~---~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~ 70 (222)
T 3qk9_A 9 FGKKVEDFKEK---TVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKL 70 (222)
T ss_dssp ---------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC-
T ss_pred HHHHHHHHhhc---CHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 34678889997 77777776 99999 99999999999999998 69999999999999999
Q ss_pred cCCCCccccccC
Q 019648 325 RDPYDHVFFDFC 336 (337)
Q Consensus 325 ~DPsF~~~~~F~ 336 (337)
+||+| +..+|+
T Consensus 71 ~DPsF-~~~~Fl 81 (222)
T 3qk9_A 71 MDPTF-SNESFT 81 (222)
T ss_dssp ----C-CHHHHH
T ss_pred hCCCC-CHHHHH
Confidence 99999 777774
No 2
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=97.41 E-value=3.2e-05 Score=68.88 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=29.6
Q ss_pred hHhhhhccccccccchHHHHHHHHHhcCCCC
Q 019648 299 VHKIQDMNETIFQETDAAASIKEIRRRDPYD 329 (337)
Q Consensus 299 V~kI~dv~~~lF~ETE~a~v~rEIr~~DPsF 329 (337)
.+||+|+++|||++|+.+.+|++|+++||+|
T Consensus 22 ~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~F 52 (194)
T 2cw9_A 22 TDKVTDLLGGLFSKTEMSEVLTEILRVDPAF 52 (194)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHhhCCCC
Confidence 3599999999999999999999999999999
No 3
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=45.17 E-value=94 Score=31.74 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccCCCcccc
Q 019648 73 LKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRD 152 (337)
Q Consensus 73 freea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~vke~~~~~kee~s~~td~~~e~ 152 (337)
++++++++|. ++|+. |-...- ..-.|+++.+-+|.+.++.++.+.+. .+.
T Consensus 310 ~k~~~~~~ek--~~Lk~-----asEii~----------s~gekise~~G~Kyk~lAkeIA~~lk----n~K--------- 359 (511)
T 1rh1_A 310 VKKEQENDEK--TVLTK-----TSEVII----------SVGDKVGEYLGDKYKALSREIAENIN----NFQ--------- 359 (511)
T ss_dssp HHHHHHHHHH--HHHHH-----HHHHHH----------HHHHHHHHHHCHHHHHHHHHHHHHHH----HCT---------
T ss_pred HHHHHHHHHH--HHHHH-----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh----hcc---------
Confidence 5666667775 68884 333333 33678888989999888888876541 111
Q ss_pred ccccCcchhhhhhccccchhhhhhhccccccC
Q 019648 153 GFKASSGEEKQKQTVSSDTAETFYGKLKSSIS 184 (337)
Q Consensus 153 gkk~~~~ee~~~a~~s~~~aes~~~k~kstis 184 (337)
||+++..++ |-.-|.|.++.+.
T Consensus 360 GKkIRnvdD----------AL~sfeKyk~nln 381 (511)
T 1rh1_A 360 GKTIRSYDD----------AMSSINKLMANPS 381 (511)
T ss_dssp TCCCCCHHH----------HHHHHHHHTTCTT
T ss_pred CceecCHHH----------HHHHHHHHHhchh
Confidence 776665544 3334667776555
No 4
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.83 E-value=38 Score=23.60 Aligned_cols=26 Identities=38% Similarity=0.600 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHH
Q 019648 64 PEFKHSVKELKKKAEEIKGVKEELKE 89 (337)
Q Consensus 64 kEmkesiKkfreea~kLe~s~eaLK~ 89 (337)
+|+|.-|.++.|+-.+|++.++-||-
T Consensus 6 kelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 68899999999999999998888873
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.99 E-value=1.8e+02 Score=28.46 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhhc
Q 019648 120 MKEKISAATEEVKGTF 135 (337)
Q Consensus 120 vKeKi~~~~e~vke~~ 135 (337)
+++.+..+..++++..
T Consensus 563 l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 563 LRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555555544
No 6
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=30.82 E-value=1.8e+02 Score=26.93 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 019648 85 EELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130 (337)
Q Consensus 85 eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~ 130 (337)
|+|+.+..-.|+.+..+++..+.+..+.....+..|...+.++...
T Consensus 179 eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~ 224 (273)
T 3s84_A 179 EELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRR 224 (273)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666555555555555555555555555444
No 7
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=29.16 E-value=47 Score=29.17 Aligned_cols=35 Identities=3% Similarity=0.071 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhH
Q 019648 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTK 92 (337)
Q Consensus 49 fs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k 92 (337)
++.-.+.+++++ +++|.++|.+ |+-..+.|+.+..
T Consensus 93 l~~~~e~lr~~l------~kdlEelr~k---L~P~~eEL~~~l~ 127 (191)
T 1nfn_A 93 LSKELQAAQARL------GADMEDVCGR---LVQYRGEVQAMLG 127 (191)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH------HHHHHHHHHH---hhHHHHHHHHHHH
Confidence 444444445444 4445555544 3333444544433
No 8
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=28.88 E-value=50 Score=21.01 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019648 116 VSASMKEKISAATEEVKGT 134 (337)
Q Consensus 116 vs~~vKeKi~~~~e~vke~ 134 (337)
+=.+||+|++.+.+.|+.+
T Consensus 6 i~~kiK~kl~~akdK~k~~ 24 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKNS 24 (26)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4467999999999998864
No 9
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=25.55 E-value=48 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 019648 40 YSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 40 ys~~rr~gffs~f~~niK~E~~KNkEmkesiKkfree 76 (337)
+.++|..+=...=+++|.+++..|++|++.|..++..
T Consensus 55 ~fggrdHsTV~ha~~ki~~~~~~d~~~~~~i~~l~~~ 91 (94)
T 1j1v_A 55 AFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 91 (94)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3367888888899999999999999999999988766
No 10
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=24.21 E-value=22 Score=22.57 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=14.5
Q ss_pred hhHHHHHHHhhcCchhhHhhhhc
Q 019648 283 IAEDVRERWETSDNPIVHKIQDM 305 (337)
Q Consensus 283 ~~edlke~wEeSDNP~V~kI~dv 305 (337)
+++|||+.|+. +|+||+.-
T Consensus 2 ~~e~mr~Q~~~----lveKvq~a 20 (26)
T 1oeg_A 2 LVEDMQRQWAG----LVEKVQAA 20 (26)
T ss_dssp HHHHTTTHHHH----HHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHH
Confidence 46788999985 78888763
No 11
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=22.04 E-value=70 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 019648 40 YSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 40 ys~~rr~gffs~f~~niK~E~~KNkEmkesiKkfree 76 (337)
+.+ |..+-..-=+++|.++|..|++|++.|.+++..
T Consensus 59 ~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~ 94 (101)
T 3pvv_A 59 AFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTR 94 (101)
T ss_dssp HTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 335 888888889999999999999999999998776
Done!