Query 019648
Match_columns 337
No_of_seqs 108 out of 122
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 04:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1va_ a.4.12.2 (A:) Chromoso 47.1 6.2 0.00045 29.1 3.0 37 40-76 55-91 (94)
2 d1l8qa1 a.4.12.2 (A:290-399) C 31.1 14 0.00099 28.1 2.7 37 40-76 68-104 (110)
3 d1ez3a_ a.47.2.1 (A:) Syntaxin 19.1 1.6E+02 0.012 21.3 8.4 22 112-133 56-77 (124)
4 d1gm5a1 a.24.21.1 (A:7-105) Re 18.5 27 0.002 26.6 2.2 35 48-82 35-69 (99)
5 d2ev0a2 a.76.1.1 (A:63-136) Ma 14.4 52 0.0038 22.8 2.7 21 56-76 54-74 (74)
6 d2etda1 a.29.9.1 (A:35-183) Hy 13.9 1.8E+02 0.013 22.0 6.3 50 47-102 68-117 (149)
7 d1gk8i_ d.73.1.1 (I:) Ribulose 12.8 36 0.0026 26.9 1.5 21 308-328 79-102 (126)
8 d1riqa1 a.203.1.1 (A:237-457) 12.3 3.3E+02 0.024 22.2 7.9 31 45-75 76-107 (221)
9 d2f05a1 a.59.1.1 (A:1-85) Sin3 12.0 68 0.0049 22.7 2.8 34 274-307 24-67 (85)
10 d1wu9a1 a.245.1.1 (A:191-249) 11.9 47 0.0034 22.9 1.7 33 274-307 25-57 (59)
No 1
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=47.11 E-value=6.2 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 019648 40 YSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 40 ys~~rr~gffs~f~~niK~E~~KNkEmkesiKkfree 76 (337)
+.++|..+-...=+++|++++..||++++.|.+++++
T Consensus 55 ~fg~rdHsTV~~a~kki~~~~~~d~~~~~~i~~i~~~ 91 (94)
T d1j1va_ 55 AFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 91 (94)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3366888888889999999999999999999998876
No 2
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=31.06 E-value=14 Score=28.06 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 019648 40 YSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 40 ys~~rr~gffs~f~~niK~E~~KNkEmkesiKkfree 76 (337)
+.++|..+-...=+++|++.|..||+|+.-|..++.+
T Consensus 68 ~fg~rdHsTV~~a~kki~~~~~~D~~l~~~v~~i~~k 104 (110)
T d1l8qa1 68 AFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEKQ 104 (110)
T ss_dssp HSSCCCSTHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred HhCCCCccHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3366888999999999999999999999999999876
No 3
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.13 E-value=1.6e+02 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 019648 112 TVKKVSASMKEKISAATEEVKG 133 (337)
Q Consensus 112 ~a~Kvs~~vKeKi~~~~e~vke 133 (337)
.+.+....||.+|..+...+.+
T Consensus 56 ~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 56 DIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555667777666665554
No 4
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.47 E-value=27 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhh
Q 019648 48 VFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKG 82 (337)
Q Consensus 48 ffs~f~~niK~E~~KNkEmkesiKkfreea~kLe~ 82 (337)
.+.++++.|.+.+.-|||+++-+++|=+=..++..
T Consensus 35 ~~~El~eeIdDpLlen~el~~kLqeF~~Yi~~~~~ 69 (99)
T d1gm5a1 35 RIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPN 69 (99)
T ss_dssp THHHHHHHCCCGGGGCHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhccHhhcCHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999776444333
No 5
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=14.44 E-value=52 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=16.4
Q ss_pred HHHHhhhChhhHHHHHHHHHH
Q 019648 56 IKGEAESNPEFKHSVKELKKK 76 (337)
Q Consensus 56 iK~E~~KNkEmkesiKkfree 76 (337)
+-+-++.||+.++.+++|+++
T Consensus 54 ~l~~~~~~P~~~~~~~~~~~~ 74 (74)
T d2ev0a2 54 LVQYFEEDDARKKDLKSIQKK 74 (74)
T ss_dssp HHHHHHTCHHHHHHHHHHHHC
T ss_pred HHCcchhChHHHHHHHHHhcC
Confidence 334456799999999999874
No 6
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=13.89 E-value=1.8e+02 Score=22.05 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhh
Q 019648 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQV 102 (337)
Q Consensus 47 gffs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v 102 (337)
+.+++.+..|---++..|++|-+ .-|..=..+|.++.+.+. .||+.|+.-
T Consensus 68 ~~l~~al~~l~~~~E~yP~Lka~-~~~~~l~~~l~~~E~~Ia-----~aR~~YN~~ 117 (149)
T d2etda1 68 AELSSALSRLLAIAENYPNLKAD-ANFRQLMDELAGTENRIA-----VARRDYNEA 117 (149)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHC-HHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 56778888888899999999865 455555555777755665 488888754
No 7
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.82 E-value=36 Score=26.92 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=17.1
Q ss_pred cccccchHHHHHHHHH---hcCCC
Q 019648 308 TIFQETDAAASIKEIR---RRDPY 328 (337)
Q Consensus 308 ~lF~ETE~a~v~rEIr---~~DPs 328 (337)
-||+.||.++||.||. +.-|+
T Consensus 79 PMFg~tD~~~Vl~Ei~~Crka~P~ 102 (126)
T d1gk8i_ 79 PMFGCRDPMQVLREIVACTKAFPD 102 (126)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCC
Confidence 4899999999999984 45555
No 8
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=12.34 E-value=3.3e+02 Score=22.24 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=24.9
Q ss_pred CcchHHHHHHHHHHHhhh-ChhhHHHHHHHHH
Q 019648 45 QFSVFKEFSKKIKGEAES-NPEFKHSVKELKK 75 (337)
Q Consensus 45 r~gffs~f~~niK~E~~K-NkEmkesiKkfre 75 (337)
...||.++++-|-+.|.. .|||+++.....+
T Consensus 76 ~~~~l~~lv~~v~~~~~~~ypel~~~~~~I~~ 107 (221)
T d1riqa1 76 ENPFLYKGVDLVVDIMKEPYPELELSREFVKG 107 (221)
T ss_dssp CSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHhhhcccchhhHHHHHHH
Confidence 466899999999999977 6999887665544
No 9
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.02 E-value=68 Score=22.68 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=19.5
Q ss_pred cc-ccchhhhhhHHHHH-HHhhcC--------chhhHhhhhccc
Q 019648 274 EP-VVTKGQEIAEDVRE-RWETSD--------NPIVHKIQDMNE 307 (337)
Q Consensus 274 n~-v~~K~~e~~edlke-~wEeSD--------NP~V~kI~dv~~ 307 (337)
+| +|+.+.++..+.+. +.+... ..|+.+|..+++
T Consensus 24 ~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~ 67 (85)
T d2f05a1 24 HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFR 67 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccccCCHHHHHHHHHHHHc
Confidence 44 67777766666655 433333 236677766544
No 10
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.87 E-value=47 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=22.5
Q ss_pred ccccchhhhhhHHHHHHHhhcCchhhHhhhhccc
Q 019648 274 EPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNE 307 (337)
Q Consensus 274 n~v~~K~~e~~edlke~wEeSDNP~V~kI~dv~~ 307 (337)
+=||+|+++|= -+-..=+.+++|++.+|.+|+.
T Consensus 25 dFYF~KLRdIE-ilcQ~~e~~~~~~~~~I~~ILY 57 (59)
T d1wu9a1 25 DFYFGKLRNIE-LICQENEGENDPVLQRIVDILY 57 (59)
T ss_dssp HHHHHHHHHHH-HHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHcCccccCchHHHHHHHHHc
Confidence 55788888542 3333456678899999998753
Done!