BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019651
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 297 CVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 335
C +C+++E CGHL C C+ L CP+CR I VRTF
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 296 LCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 335
LC++C E+E CGH CC C+++L +CP+CR R++ V +
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 297 CVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 335
C +C+++E CGHL C C+ L CP+CR I VRTF
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 34.3 bits (77), Expect = 0.095, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 297 CVIC---------LEQECGHLCCCLICSSRLTN----CPLCRRRIDQVVRTF 335
CVIC + + GHL C C+ +L CP+CR+ I +V T+
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 34.3 bits (77), Expect = 0.096, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 276 TNGQAENGSDSTQRDRVMPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLC 324
T+ Q E ++ R LC IC+++ CGHL C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 297 CVIC---------LEQECGHLCCCLICSSRLTN----CPLCRRRIDQVVRTF 335
CVIC + + GHL C C+ +L CP+CR+ I +V T+
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 276 TNGQAENGSDSTQRDRVMPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLC 324
T+ Q E ++ R LC IC+++ CGHL C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 279 QAENGSDSTQRDRVMPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLC 324
Q E ++ R LC IC+++ CGHL C C+ + CP+C
Sbjct: 10 QKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 62
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 306 GHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 335
GHL C C+ RL +CP+C++ I V++ F
Sbjct: 28 GHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 117 DDGTGCVFVVGARGATGFALTVGSEVFEESGRS 149
DDGT +FVV + G F +G ++FE+S +
Sbjct: 224 DDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNEN 256
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 117 DDGTGCVFVVGARGATGFALTVGSEVFEESGRS 149
DDGT +FVV + G F +G ++FE+S +
Sbjct: 220 DDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNEN 252
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 158 LQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLE 215
L GL V+ + R+L G +V + D+ T+R QRP + + ++ + ID+ LE
Sbjct: 193 LAGLTKRRVRALARML--GADEPLVLKTPTADLETLRPQRPDEHAYGITYEQIDDFLE 248
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 299 ICLEQECGHLCCCLICSSRLTN---CPLCRRRIDQ 330
+ + ECGH+ C L N CP CR++I+
Sbjct: 22 LIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 2 ISWGGISCCLSGAALYLLGRSSGRDAELLKTVTRVN-QLEELAHLLDGG----------- 49
++ GG +G +L + R S D+ L TR + L +++H+L
Sbjct: 15 LAHGGKMVAFAGWSLPVQYRDSHTDSHLH---TRQHCSLFDVSHMLQTKILGSDRVKLME 71
Query: 50 SKVLPSIVSVSGRVGSETPISCEYSG-LRGVIVEETTERHFLKHNDAGSWIQDSALMLSM 108
S V+ I + G+ + + E G L +IV T+E H ++AG W +D ALM
Sbjct: 72 SLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDK 131
Query: 109 SKEV 112
+E+
Sbjct: 132 VREL 135
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 283 GSDSTQRDRVMPD-LCVICLEQ-------ECGHLCCCLICSSRLTNCPLCRRRIDQVVRT 334
GS Q R+ + C +CL++ CGHL C C+ L CP+CR + VRT
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVC-AECAPGLQLCPICRAPVRSRVRT 59
Query: 335 F 335
F
Sbjct: 60 F 60
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 31 KTVTRVNQLEELAHLLDGGSKVLPSIVSVSGRVGSETPISCEYSGLRGVIVEETTERHF- 89
+ +TR NQ E HLL SK IV S +GS T IS R E +H+
Sbjct: 21 RNITR-NQAE---HLLRQESKEGAFIVRDSRHLGSYT-ISVFMGARRST---EAAIKHYQ 72
Query: 90 LKHNDAGSWIQDSALMLSMSKEVPWYLDDG-----TGCVFVVGARGATG 133
+K ND+G W E+ WY T + VG G++G
Sbjct: 73 IKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMTRLRYPVGLMGSSG 121
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 297 CVICLEQECGH---LCC----CLICSSRLT----NCPLCRRRIDQVVRT 334
C ICLE + L C C +C +R CPLC+ ++ VV T
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,553,667
Number of Sequences: 62578
Number of extensions: 383465
Number of successful extensions: 996
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 22
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)