Query 019651
Match_columns 337
No_of_seqs 304 out of 1244
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 3.3E-45 7.2E-50 341.6 10.0 335 1-337 1-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 2.8E-32 6E-37 236.1 15.7 140 95-234 12-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.3 1.6E-13 3.4E-18 94.5 -1.7 43 295-337 8-62 (62)
4 KOG4275 Predicted E3 ubiquitin 99.0 1.3E-10 2.8E-15 106.4 0.6 71 252-337 273-350 (350)
5 KOG4265 Predicted E3 ubiquitin 98.9 2.5E-10 5.4E-15 107.8 1.1 45 292-336 288-343 (349)
6 PF13920 zf-C3HC4_3: Zinc fing 98.7 2.6E-09 5.7E-14 74.2 0.4 38 294-331 2-50 (50)
7 KOG1100 Predicted E3 ubiquitin 98.0 2.7E-06 5.9E-11 76.5 1.7 41 296-336 160-207 (207)
8 KOG0320 Predicted E3 ubiquitin 98.0 2.8E-06 6E-11 73.3 1.6 41 295-336 132-187 (187)
9 PLN03208 E3 ubiquitin-protein 97.7 2.9E-05 6.3E-10 68.5 2.9 45 291-336 15-88 (193)
10 KOG4628 Predicted E3 ubiquitin 97.6 0.00018 3.9E-09 69.1 7.7 36 295-331 230-280 (348)
11 KOG2164 Predicted E3 ubiquitin 97.5 3.7E-05 8.1E-10 76.1 1.6 41 294-335 186-244 (513)
12 KOG0823 Predicted E3 ubiquitin 97.5 5.1E-05 1.1E-09 68.2 1.8 42 294-336 47-104 (230)
13 PHA02929 N1R/p28-like protein; 97.4 6.7E-05 1.4E-09 68.7 2.3 41 293-334 173-232 (238)
14 KOG0317 Predicted E3 ubiquitin 97.3 8.4E-05 1.8E-09 68.8 1.6 39 292-331 237-286 (293)
15 PHA02926 zinc finger-like prot 97.2 8.7E-05 1.9E-09 66.5 0.5 39 294-333 170-234 (242)
16 PF13639 zf-RING_2: Ring finge 97.2 8.9E-05 1.9E-09 49.8 -0.2 30 295-325 1-44 (44)
17 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00079 1.7E-08 64.4 5.8 38 290-328 283-344 (491)
18 PF14634 zf-RING_5: zinc-RING 97.1 0.00022 4.7E-09 48.0 1.2 29 297-326 2-44 (44)
19 KOG0978 E3 ubiquitin ligase in 97.0 0.00021 4.6E-09 74.0 0.7 40 295-335 644-697 (698)
20 COG5574 PEX10 RING-finger-cont 97.0 0.00034 7.3E-09 64.1 1.9 36 293-329 214-262 (271)
21 PF13923 zf-C3HC4_2: Zinc fing 96.8 0.00028 6.2E-09 46.1 0.1 27 297-324 1-39 (39)
22 cd00162 RING RING-finger (Real 96.3 0.0024 5.2E-08 41.8 1.8 32 296-328 1-45 (45)
23 KOG1785 Tyrosine kinase negati 95.8 0.0028 6.2E-08 61.1 0.4 39 294-333 369-420 (563)
24 TIGR00599 rad18 DNA repair pro 95.8 0.0042 9.2E-08 61.1 1.6 39 291-330 23-72 (397)
25 PF00097 zf-C3HC4: Zinc finger 95.5 0.0042 9.2E-08 40.7 0.3 27 297-324 1-41 (41)
26 COG5236 Uncharacterized conser 95.1 0.015 3.3E-07 55.3 2.8 41 291-332 58-111 (493)
27 PF15227 zf-C3HC4_4: zinc fing 95.1 0.0074 1.6E-07 40.2 0.5 27 297-324 1-42 (42)
28 smart00184 RING Ring finger. E 95.0 0.013 2.8E-07 36.8 1.4 27 297-324 1-39 (39)
29 PF14835 zf-RING_6: zf-RING of 94.6 0.016 3.4E-07 42.1 1.1 34 295-329 8-51 (65)
30 KOG2879 Predicted E3 ubiquitin 94.5 0.17 3.7E-06 47.0 7.8 38 292-330 237-288 (298)
31 COG5432 RAD18 RING-finger-cont 94.4 0.014 3.1E-07 54.3 0.8 34 295-329 26-70 (391)
32 KOG0802 E3 ubiquitin ligase [P 94.2 0.09 1.9E-06 54.2 6.2 37 291-328 288-340 (543)
33 smart00504 Ubox Modified RING 94.2 0.025 5.4E-07 40.4 1.4 33 296-329 3-46 (63)
34 KOG3002 Zn finger protein [Gen 94.0 0.024 5.3E-07 53.8 1.3 39 291-330 45-92 (299)
35 PF14447 Prok-RING_4: Prokaryo 93.9 0.027 5.8E-07 39.6 1.1 36 294-330 7-51 (55)
36 PF12678 zf-rbx1: RING-H2 zinc 93.9 0.024 5.2E-07 42.4 0.9 20 305-325 50-73 (73)
37 KOG0804 Cytoplasmic Zn-finger 93.9 0.033 7.1E-07 54.8 2.0 37 292-329 173-222 (493)
38 COG5540 RING-finger-containing 93.4 0.031 6.7E-07 52.4 1.0 35 294-329 323-372 (374)
39 KOG4692 Predicted E3 ubiquitin 92.9 0.074 1.6E-06 50.9 2.7 38 292-330 420-468 (489)
40 KOG0311 Predicted E3 ubiquitin 92.2 0.022 4.7E-07 54.5 -1.9 37 294-331 43-92 (381)
41 KOG1571 Predicted E3 ubiquitin 92.1 0.19 4.2E-06 48.3 4.3 75 163-239 209-283 (355)
42 PF14570 zf-RING_4: RING/Ubox 92.0 0.056 1.2E-06 37.0 0.5 23 305-328 20-47 (48)
43 PF13445 zf-RING_UBOX: RING-ty 91.7 0.037 8E-07 37.0 -0.6 13 305-318 19-31 (43)
44 KOG0287 Postreplication repair 91.4 0.056 1.2E-06 51.5 -0.0 37 293-330 22-69 (442)
45 KOG1039 Predicted E3 ubiquitin 90.6 0.11 2.3E-06 50.4 1.0 40 293-333 160-225 (344)
46 KOG0826 Predicted E3 ubiquitin 90.4 0.56 1.2E-05 44.7 5.6 45 290-335 296-354 (357)
47 KOG3799 Rab3 effector RIM1 and 90.0 0.87 1.9E-05 37.9 5.7 37 292-328 63-117 (169)
48 KOG1813 Predicted E3 ubiquitin 88.1 0.25 5.5E-06 46.3 1.5 40 292-332 239-289 (313)
49 PF12861 zf-Apc11: Anaphase-pr 87.9 0.25 5.5E-06 38.0 1.1 24 305-329 52-82 (85)
50 COG5152 Uncharacterized conser 86.2 0.35 7.6E-06 42.8 1.2 40 292-332 194-244 (259)
51 PF06305 DUF1049: Protein of u 86.0 4.7 0.0001 29.1 7.1 22 244-265 41-62 (68)
52 KOG0825 PHD Zn-finger protein 85.8 0.24 5.1E-06 52.1 -0.0 28 305-333 144-175 (1134)
53 KOG1428 Inhibitor of type V ad 83.1 0.43 9.3E-06 53.3 0.5 39 292-331 3484-3546(3738)
54 PF14880 COX14: Cytochrome oxi 83.1 9.5 0.00021 27.1 7.3 34 222-255 15-48 (59)
55 KOG4159 Predicted E3 ubiquitin 80.7 0.83 1.8E-05 45.2 1.5 38 292-330 82-130 (398)
56 PF02318 FYVE_2: FYVE-type zin 80.2 3.3 7.2E-05 33.7 4.7 34 293-327 53-103 (118)
57 PF08114 PMP1_2: ATPase proteo 79.6 4.5 9.9E-05 26.6 4.1 21 231-251 17-37 (43)
58 KOG2932 E3 ubiquitin ligase in 77.7 1 2.2E-05 42.7 0.9 37 294-331 90-136 (389)
59 PF03854 zf-P11: P-11 zinc fin 76.1 0.87 1.9E-05 31.0 0.0 37 296-332 4-49 (50)
60 PF04641 Rtf2: Rtf2 RING-finge 75.8 1.5 3.3E-05 40.8 1.6 37 293-330 112-162 (260)
61 PF05290 Baculo_IE-1: Baculovi 75.2 1.2 2.5E-05 37.1 0.6 37 294-331 80-134 (140)
62 KOG0828 Predicted E3 ubiquitin 75.2 1 2.2E-05 45.2 0.3 37 293-330 570-635 (636)
63 PF14798 Ca_hom_mod: Calcium h 74.4 25 0.00053 32.7 9.2 57 209-265 166-234 (251)
64 PF10883 DUF2681: Protein of u 74.3 23 0.0005 27.4 7.5 28 234-261 13-40 (87)
65 PF10272 Tmpp129: Putative tra 73.2 4.6 0.0001 39.4 4.2 9 320-328 342-350 (358)
66 KOG1001 Helicase-like transcri 71.8 1.3 2.9E-05 46.8 0.2 35 295-330 455-501 (674)
67 KOG1734 Predicted RING-contain 71.3 21 0.00046 33.4 7.8 39 291-330 221-282 (328)
68 KOG0297 TNF receptor-associate 70.8 2.2 4.7E-05 42.3 1.4 42 291-333 18-71 (391)
69 COG5219 Uncharacterized conser 68.8 1.5 3.3E-05 47.3 -0.2 36 294-330 1469-1524(1525)
70 KOG3039 Uncharacterized conser 68.8 2.5 5.5E-05 38.8 1.3 35 295-330 222-271 (303)
71 PF00558 Vpu: Vpu protein; In 67.2 6.9 0.00015 29.8 3.2 21 244-264 27-47 (81)
72 KOG1814 Predicted E3 ubiquitin 66.3 4.7 0.0001 39.7 2.6 23 294-317 184-216 (445)
73 PF08693 SKG6: Transmembrane a 62.6 3 6.6E-05 27.4 0.4 20 3-23 20-39 (40)
74 PF09835 DUF2062: Uncharacteri 62.3 34 0.00075 28.8 7.0 36 204-239 100-135 (154)
75 PF06305 DUF1049: Protein of u 60.2 49 0.0011 23.6 6.6 14 245-258 39-52 (68)
76 PF06697 DUF1191: Protein of u 58.7 3.3 7.2E-05 38.9 0.1 23 218-240 207-230 (278)
77 PF01102 Glycophorin_A: Glycop 58.0 13 0.00028 30.7 3.5 29 216-244 60-88 (122)
78 COG5222 Uncharacterized conser 57.7 9.9 0.00021 36.0 3.0 31 295-326 275-318 (427)
79 KOG1002 Nucleotide excision re 57.6 4 8.7E-05 41.5 0.5 34 294-328 536-585 (791)
80 PF14316 DUF4381: Domain of un 56.6 26 0.00056 29.5 5.2 28 235-262 33-60 (146)
81 KOG2177 Predicted E3 ubiquitin 56.1 4.9 0.00011 36.6 0.8 25 301-326 27-55 (386)
82 KOG4445 Uncharacterized conser 54.8 2.8 6E-05 39.6 -1.0 34 295-329 116-186 (368)
83 KOG2113 Predicted RNA binding 51.5 11 0.00023 36.1 2.2 41 294-334 343-392 (394)
84 PF04564 U-box: U-box domain; 49.8 7 0.00015 28.9 0.6 36 294-330 4-51 (73)
85 PHA03096 p28-like protein; Pro 48.4 6.3 0.00014 37.3 0.2 22 295-317 179-215 (284)
86 COG3114 CcmD Heme exporter pro 48.4 1E+02 0.0023 22.4 7.2 17 223-239 17-33 (67)
87 TIGR00985 3a0801s04tom mitocho 47.7 43 0.00092 28.6 5.1 22 226-247 8-29 (148)
88 cd04488 RecG_wedge_OBF RecG_we 47.6 32 0.0007 24.2 3.9 29 170-199 43-71 (75)
89 KOG2113 Predicted RNA binding 47.6 6.4 0.00014 37.5 0.1 42 293-334 135-188 (394)
90 PF10235 Cript: Microtubule-as 47.4 11 0.00024 29.3 1.4 36 294-330 44-81 (90)
91 PF05961 Chordopox_A13L: Chord 47.3 14 0.0003 27.1 1.8 23 3-25 6-28 (68)
92 cd00729 rubredoxin_SM Rubredox 45.8 9 0.0002 24.1 0.6 15 319-333 19-33 (34)
93 PRK13872 conjugal transfer pro 45.3 27 0.00059 31.7 3.9 34 200-233 17-50 (228)
94 PF10882 bPH_5: Bacterial PH d 44.8 54 0.0012 25.3 5.1 30 190-220 70-99 (100)
95 PF01102 Glycophorin_A: Glycop 44.8 30 0.00066 28.5 3.7 28 224-251 64-91 (122)
96 PRK00523 hypothetical protein; 43.8 76 0.0016 23.7 5.2 28 221-248 4-31 (72)
97 PF12597 DUF3767: Protein of u 43.5 1E+02 0.0022 25.2 6.5 24 242-265 84-107 (118)
98 KOG3899 Uncharacterized conser 43.3 7.8 0.00017 36.6 -0.1 10 320-329 356-365 (381)
99 PF12273 RCR: Chitin synthesis 42.9 17 0.00037 30.0 2.0 13 16-28 16-28 (130)
100 PF10176 DUF2370: Protein of u 42.9 44 0.00095 30.7 4.7 28 224-251 193-220 (233)
101 PF02891 zf-MIZ: MIZ/SP-RING z 42.8 6.2 0.00013 27.1 -0.6 31 296-327 4-50 (50)
102 PF10883 DUF2681: Protein of u 41.3 1.5E+02 0.0032 23.0 6.7 27 232-258 8-34 (87)
103 PF10217 DUF2039: Uncharacteri 40.7 11 0.00025 29.4 0.5 34 293-327 54-90 (92)
104 TIGR03141 cytochro_ccmD heme e 38.9 1.2E+02 0.0025 20.2 5.5 13 224-236 7-19 (45)
105 PRK13836 conjugal transfer pro 38.7 39 0.00084 30.5 3.8 35 200-234 8-42 (220)
106 PF04710 Pellino: Pellino; In 37.2 11 0.00024 37.0 0.0 16 320-335 392-410 (416)
107 PRK13887 conjugal transfer pro 36.5 47 0.001 30.7 4.0 38 197-234 28-65 (250)
108 PF10367 Vps39_2: Vacuolar sor 36.4 1E+02 0.0022 23.8 5.5 24 292-316 76-108 (109)
109 PF15099 PIRT: Phosphoinositid 36.3 38 0.00083 28.0 2.9 20 224-243 80-99 (129)
110 cd04489 ExoVII_LU_OBF ExoVII_L 36.3 88 0.0019 22.6 4.8 27 169-195 42-69 (78)
111 PF12123 Amidase02_C: N-acetyl 36.0 45 0.00098 22.5 2.8 29 191-220 6-35 (45)
112 cd00350 rubredoxin_like Rubred 35.9 14 0.0003 23.0 0.3 15 319-333 18-32 (33)
113 PHA02610 uvsY.-2 hypothetical 35.2 19 0.0004 25.0 0.8 16 319-334 2-17 (53)
114 PF07787 DUF1625: Protein of u 35.2 3.5E+02 0.0077 24.7 9.9 65 175-242 132-204 (248)
115 PF14163 SieB: Superinfection 35.0 1.7E+02 0.0038 24.5 7.0 19 247-265 63-81 (151)
116 PHA03237 envelope glycoprotein 34.3 1.8E+02 0.0039 29.2 7.8 17 233-249 337-353 (424)
117 smart00734 ZnF_Rad18 Rad18-lik 34.2 21 0.00045 21.0 0.8 11 319-329 2-12 (26)
118 PF14569 zf-UDP: Zinc-binding 34.1 22 0.00049 26.8 1.2 36 293-329 8-62 (80)
119 PF10571 UPF0547: Uncharacteri 34.1 17 0.00037 21.5 0.4 17 311-327 3-23 (26)
120 PF09838 DUF2065: Uncharacteri 34.0 31 0.00068 24.4 1.9 38 202-239 15-53 (57)
121 KOG4217 Nuclear receptors of t 33.8 21 0.00046 35.9 1.3 23 293-315 268-293 (605)
122 PF02656 DUF202: Domain of unk 32.9 98 0.0021 22.4 4.5 27 222-248 43-69 (73)
123 PHA03049 IMV membrane protein; 32.8 32 0.0007 25.1 1.7 23 3-25 6-28 (68)
124 COG3701 TrbF Type IV secretory 32.7 24 0.00051 31.7 1.3 45 201-245 18-62 (228)
125 KOG3842 Adaptor protein Pellin 32.6 23 0.00049 33.9 1.2 11 320-330 405-415 (429)
126 PF10083 DUF2321: Uncharacteri 32.5 15 0.00033 31.4 0.1 24 310-333 30-54 (158)
127 PF04423 Rad50_zn_hook: Rad50 32.2 16 0.00036 25.2 0.2 9 320-328 22-30 (54)
128 PF15086 UPF0542: Uncharacteri 32.2 2.2E+02 0.0047 21.3 7.9 13 237-249 38-50 (74)
129 KOG2114 Vacuolar assembly/sort 32.1 31 0.00066 37.3 2.2 36 295-331 841-885 (933)
130 COG3768 Predicted membrane pro 31.8 3.1E+02 0.0067 26.5 8.5 37 211-247 84-120 (350)
131 PF08285 DPM3: Dolichol-phosph 31.4 1.1E+02 0.0023 23.9 4.7 40 226-265 43-82 (91)
132 COG1592 Rubrerythrin [Energy p 31.4 19 0.00042 31.3 0.5 24 305-332 140-163 (166)
133 KOG2660 Locus-specific chromos 31.4 13 0.00029 35.5 -0.5 40 294-334 18-66 (331)
134 PRK01844 hypothetical protein; 31.3 1.5E+02 0.0033 22.1 5.1 24 224-247 6-29 (72)
135 KOG1940 Zn-finger protein [Gen 31.3 10 0.00022 35.7 -1.3 38 296-335 160-212 (276)
136 PF10886 DUF2685: Protein of u 31.1 24 0.00052 24.7 0.9 16 318-333 1-16 (54)
137 COG4306 Uncharacterized protei 31.0 18 0.00038 29.9 0.2 22 311-332 31-53 (160)
138 COG5175 MOT2 Transcriptional r 31.0 20 0.00043 34.6 0.6 25 305-330 36-65 (480)
139 PF01363 FYVE: FYVE zinc finge 30.9 17 0.00037 26.2 0.1 24 293-317 8-42 (69)
140 PF05546 She9_MDM33: She9 / Md 30.7 3.2E+02 0.007 24.6 8.1 26 240-265 169-194 (207)
141 PF00672 HAMP: HAMP domain; I 30.7 29 0.00063 24.5 1.3 33 1-33 1-33 (70)
142 PF13240 zinc_ribbon_2: zinc-r 30.5 20 0.00043 20.5 0.3 18 311-328 2-23 (23)
143 PF12868 DUF3824: Domain of un 30.0 42 0.0009 28.3 2.3 14 226-239 9-22 (137)
144 KOG1812 Predicted E3 ubiquitin 29.9 23 0.0005 35.0 0.9 23 294-317 146-179 (384)
145 TIGR02976 phageshock_pspB phag 29.6 2.4E+02 0.0052 21.1 6.1 6 243-248 22-27 (75)
146 PF10146 zf-C4H2: Zinc finger- 29.0 22 0.00047 32.7 0.4 24 307-330 193-220 (230)
147 KOG2817 Predicted E3 ubiquitin 29.0 22 0.00047 35.0 0.5 32 296-328 336-384 (394)
148 KOG2068 MOT2 transcription fac 28.3 35 0.00077 32.8 1.7 38 294-332 249-301 (327)
149 PF01336 tRNA_anti-codon: OB-f 27.6 67 0.0014 22.7 2.8 27 172-198 44-70 (75)
150 PF07047 OPA3: Optic atrophy 3 27.4 1.9E+02 0.0041 24.0 5.9 14 202-215 60-73 (134)
151 COG3105 Uncharacterized protei 26.5 3.5E+02 0.0077 22.6 7.0 15 223-238 7-21 (138)
152 PRK00398 rpoP DNA-directed RNA 26.1 21 0.00045 23.8 -0.1 23 307-329 2-32 (46)
153 PF15061 DUF4538: Domain of un 25.9 44 0.00095 23.8 1.4 19 2-21 9-27 (58)
154 PF12768 Rax2: Cortical protei 25.6 59 0.0013 30.7 2.7 38 170-207 155-195 (281)
155 PF04216 FdhE: Protein involve 25.6 27 0.00059 32.9 0.5 42 293-335 171-228 (290)
156 PF04999 FtsL: Cell division p 25.5 3.1E+02 0.0067 21.0 9.0 27 213-239 5-31 (97)
157 PF06864 PAP_PilO: Pilin acces 25.0 2E+02 0.0044 28.5 6.6 7 243-249 182-188 (414)
158 PF11190 DUF2976: Protein of u 24.9 2.5E+02 0.0053 21.8 5.5 50 195-250 4-53 (87)
159 PF10399 UCR_Fe-S_N: Ubiquitin 24.8 1.4E+02 0.003 19.7 3.6 27 221-247 12-38 (41)
160 PF14159 CAAD: CAAD domains of 24.8 1.6E+02 0.0035 22.8 4.6 33 233-265 54-86 (90)
161 PF06864 PAP_PilO: Pilin acces 24.4 1.8E+02 0.0039 28.9 6.1 28 228-255 170-197 (414)
162 PF10855 DUF2648: Protein of u 24.4 69 0.0015 19.9 1.9 24 4-29 4-27 (33)
163 COG4357 Zinc finger domain con 24.3 38 0.00083 26.7 1.0 12 320-331 82-93 (105)
164 PF07191 zinc-ribbons_6: zinc- 24.0 23 0.0005 26.3 -0.3 36 295-330 2-42 (70)
165 PRK01343 zinc-binding protein; 23.9 38 0.00081 24.1 0.8 12 319-330 10-21 (57)
166 PF05283 MGC-24: Multi-glycosy 23.4 69 0.0015 28.4 2.6 22 225-247 163-184 (186)
167 cd04483 hOBFC1_like hOBFC1_lik 23.4 99 0.0022 23.9 3.2 26 169-195 59-84 (92)
168 cd04478 RPA2_DBD_D RPA2_DBD_D: 23.3 3.2E+02 0.007 20.4 6.6 25 170-195 45-69 (95)
169 KOG1705 Uncharacterized conser 23.3 36 0.00078 26.5 0.6 33 294-326 27-63 (110)
170 cd00730 rubredoxin Rubredoxin; 23.3 34 0.00075 23.5 0.5 14 320-333 36-49 (50)
171 PF06936 Selenoprotein_S: Sele 22.9 1.4E+02 0.003 26.6 4.4 7 233-239 44-50 (190)
172 PF11669 WBP-1: WW domain-bind 22.9 1.5E+02 0.0032 23.5 4.2 9 223-231 22-30 (102)
173 COG4298 Uncharacterized protei 22.9 3.1E+02 0.0067 21.2 5.6 21 244-264 63-83 (95)
174 KOG1313 DHHC-type Zn-finger pr 22.7 1.8E+02 0.0038 27.5 5.1 33 291-323 99-135 (309)
175 PF09577 Spore_YpjB: Sporulati 22.6 1.4E+02 0.0031 27.3 4.6 18 236-253 211-228 (232)
176 PF11014 DUF2852: Protein of u 22.3 4.3E+02 0.0094 21.5 7.5 23 223-245 14-36 (115)
177 PF15050 SCIMP: SCIMP protein 22.3 90 0.002 25.6 2.8 24 223-246 8-33 (133)
178 PF02563 Poly_export: Polysacc 22.2 1.5E+02 0.0032 22.1 3.9 50 170-221 10-67 (82)
179 PF12120 Arr-ms: Rifampin ADP- 22.2 56 0.0012 25.7 1.5 46 118-185 52-97 (100)
180 KOG4362 Transcriptional regula 21.9 28 0.00062 36.8 -0.2 35 295-330 22-70 (684)
181 PF11789 zf-Nse: Zinc-finger o 21.5 31 0.00067 24.3 -0.0 29 294-323 11-53 (57)
182 PF12669 P12: Virus attachment 21.4 74 0.0016 22.6 1.9 6 2-7 2-7 (58)
183 PF15102 TMEM154: TMEM154 prot 21.4 26 0.00056 29.8 -0.5 16 9-24 71-86 (146)
184 PF14169 YdjO: Cold-inducible 21.2 54 0.0012 23.5 1.2 16 319-334 40-55 (59)
185 PF14147 Spore_YhaL: Sporulati 21.2 3E+02 0.0064 19.2 6.7 18 233-250 9-26 (52)
186 PF09237 GAGA: GAGA factor; I 21.1 32 0.00069 23.9 0.0 10 320-329 26-35 (54)
187 PF06724 DUF1206: Domain of Un 21.1 2.3E+02 0.0051 20.5 4.7 38 208-249 31-68 (73)
188 COG3216 Uncharacterized protei 21.0 2.2E+02 0.0047 25.1 5.1 17 190-206 105-123 (184)
189 PRK00418 DNA gyrase inhibitor; 20.9 45 0.00097 24.1 0.7 11 319-329 7-17 (62)
190 KOG1729 FYVE finger containing 20.6 34 0.00075 32.4 0.1 35 292-327 166-223 (288)
191 PRK10884 SH3 domain-containing 20.6 5.2E+02 0.011 23.2 7.7 21 163-184 41-61 (206)
192 KOG0824 Predicted E3 ubiquitin 20.4 43 0.00094 31.9 0.7 31 293-332 26-56 (324)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-45 Score=341.57 Aligned_cols=335 Identities=32% Similarity=0.514 Sum_probs=292.8
Q ss_pred CceechhHHHHHHHHHHHHhh---cchhhhHhhcccccccchhHHHHhhcCC-CCccccEEEEEEEEec-CCCccccC-C
Q 019651 1 MISWGGISCCLSGAALYLLGR---SSGRDAELLKTVTRVNQLEELAHLLDGG-SKVLPSIVSVSGRVGS-ETPISCEY-S 74 (337)
Q Consensus 1 m~~~g~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~~~~~~~L~~~l~~~-~~~~~~~V~V~G~v~~-~~PL~s~~-s 74 (337)
|..-+.+++++..+++++.++ ++.+..+.++.++....+.|+...++.. .++++|+ .++|.+.+ ..|+.+-. +
T Consensus 1 ~~l~~~~~~~~~~v~l~l~~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~~I~~l-~~~~~~~~~~~~~~~~~v~ 79 (355)
T KOG1571|consen 1 MSLEGRFLLGLTNVALRLLFRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEKKIPYL-VIRGCAIARKETLRSLCVS 79 (355)
T ss_pred CchhHHHHHhhhHHHHHhhhhhcccchhhHHHhhhccceecchhhhhhhhhccccchHHH-HHhhcccccccchHHhhcc
Confidence 556677766666666665555 4555666667888888888888877664 8899999 59999999 77777776 7
Q ss_pred CCcEEEEEEEEEEEEEeecCCCceeecceeeeeceeeeceEEEcCCee----EEEeCCCCCcccceeeeeeeEecCC-cc
Q 019651 75 GLRGVIVEETTERHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGC----VFVVGARGATGFALTVGSEVFEESG-RS 149 (337)
Q Consensus 75 ~~~cV~y~~~v~e~~~~~~~~~~W~~~~~~i~~~~~~vpF~L~D~tg~----V~V~~~~~A~~l~l~~~~~~f~~~~-~~ 149 (337)
++++|.+..+.+++...+++.+.|.+.+..++++.+++||+|.+.++. +++..+.+.-.++++++++.|+++. .+
T Consensus 80 ~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s 159 (355)
T KOG1571|consen 80 NVPGVVQALTLEEPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCS 159 (355)
T ss_pred cCCceEEEeeeccceeeeccceeeccceeeccCCCcccceeeccCCcceeeeeeeecceeeeeecceeeeccccccCcce
Confidence 999999999999999877778889999999999999999999999888 9999999999999999999999998 57
Q ss_pred cccccccccccccccceEEEEeeecCCCeEEEEEEEEECCCcceEEeCCCCCCeEEccCCHHHHHHHHHHHHHHHHHHHh
Q 019651 150 LVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWARWYKYASF 229 (337)
Q Consensus 150 ~~~~~~~~~~g~~~~g~r~~E~~L~~G~~ltvvGe~~~d~~G~l~i~~p~~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i 229 (337)
+.+..+++++|.++.|.+.+|++|++|+.+|++||++.|+.+..++++|.+||+|++....++|+.++..+.++.++.++
T Consensus 160 ~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~ 239 (355)
T KOG1571|consen 160 LVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGM 239 (355)
T ss_pred eeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecce
Confidence 88899999999999999999999999999999999999987889999999995444444499999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCcccCCCcccccccccccc---
Q 019651 230 GLTIFGAFLIAKRVIRCILQ--RKRRWELRRRVLAAAAVQRSEQDNEGTNGQAENGSDSTQRDRVMPDLCVICLEQE--- 304 (337)
Q Consensus 230 ~~~~~G~~ll~~~~~r~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~--- 304 (337)
+|+++|+++|++....++++ +++++++.+++.++.+ .|++....+++++-.+-+++.+.+...++.|+||++++
T Consensus 240 ~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~ 318 (355)
T KOG1571|consen 240 VFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSA 318 (355)
T ss_pred eeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhh-heeeeecccccccccccccCcccccCCCCceEEecCCccce
Confidence 99999999999999999998 8899999999999888 78877766665553333566677777788999999999
Q ss_pred ----ccCcccchhhhhcCCCCccccccccceEEeeeC
Q 019651 305 ----CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 305 ----CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~~ 337 (337)
|||+|||..|+..++.||+||+.|+..+++|.|
T Consensus 319 ~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 319 VFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred eeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999986
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=100.00 E-value=2.8e-32 Score=236.07 Aligned_cols=140 Identities=36% Similarity=0.617 Sum_probs=131.4
Q ss_pred CCceeecceeeeeceeeeceEEEcCCeeEEEeCCCCCcccceeeeeeeEecCCccccccccccccccc---ccceEEEEe
Q 019651 95 AGSWIQDSALMLSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLK---MLGVKRIGR 171 (337)
Q Consensus 95 ~~~W~~~~~~i~~~~~~vpF~L~D~tg~V~V~~~~~A~~l~l~~~~~~f~~~~~~~~~~~~~~~~g~~---~~g~r~~E~ 171 (337)
+++|.+..++++++.+.+||+|+|+||+|.|+++..+..+++++++++|+|...+..+.+++++++.+ ++||||+|+
T Consensus 12 ~~~~~~~~~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~ 91 (160)
T PF12483_consen 12 SRRWSSSWRTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEE 91 (160)
T ss_pred CCcccccEEEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEE
Confidence 56788888999999999999999999999998777788899999999999887677778888999988 999999999
Q ss_pred eecCCCeEEEEEEEEECCCcceEEeCCCCC--CeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHH
Q 019651 172 LLPTGTSLTVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELLENLGKWARWYKYASFGLTIF 234 (337)
Q Consensus 172 ~L~~G~~ltvvGe~~~d~~G~l~i~~p~~g--pf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~ 234 (337)
+|++|++|||+|++..|++|.+.|++|++| |||||++++++|+++++.++++|+|++++|+++
T Consensus 92 ~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 92 ILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 999999999999999999999999999998 999999999999999999999999999999887
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-13 Score=94.47 Aligned_cols=43 Identities=49% Similarity=1.250 Sum_probs=40.1
Q ss_pred cccccccccc-------ccCcccchhhhhcCC-----CCccccccccceEEeeeC
Q 019651 295 DLCVICLEQE-------CGHLCCCLICSSRLT-----NCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 295 ~~C~iC~~~~-------CgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~~~~~ 337 (337)
++|.||+++| |||+|.|++|+.++. .||+||++|..+|+.|+|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 6999999999 999999999998873 799999999999999975
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.3e-10 Score=106.37 Aligned_cols=71 Identities=35% Similarity=0.803 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCcccCCCcccccccccccc-------ccCcccchhhhhcCCCCccc
Q 019651 252 RRWELRRRVLAAAAVQRSEQDNEGTNGQAENGSDSTQRDRVMPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLC 324 (337)
Q Consensus 252 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~C 324 (337)
+++++..++.++.. .++. ++.. ..+. ....|.||||.| |||++.|..|...|..||||
T Consensus 273 ek~el~d~vtrl~k----~~~g---~~~~-------~s~~-~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPIC 337 (350)
T KOG4275|consen 273 EKYELDDRVTRLYK----GNDG---EQHS-------RSLA-TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPIC 337 (350)
T ss_pred HHHHHHHHHHHHHh----cccc---cccc-------cchh-HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchH
Confidence 47888888877655 1110 0111 0112 257999999999 99999999999999999999
Q ss_pred cccccceEEeeeC
Q 019651 325 RRRIDQVVRTFRH 337 (337)
Q Consensus 325 r~~i~~~~~~~~~ 337 (337)
|+.|..+++||++
T Consensus 338 Rqyi~rvvrif~~ 350 (350)
T KOG4275|consen 338 RQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999999975
No 5
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.5e-10 Score=107.83 Aligned_cols=45 Identities=40% Similarity=1.024 Sum_probs=40.4
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcCC----CCccccccccceEEeee
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRLT----NCPLCRRRIDQVVRTFR 336 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~~~~ 336 (337)
+...+|+||++.+ |+|+|+|..|++.+. +|||||++|...+.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 4456999999998 999999999999873 79999999999998875
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=2.6e-09 Score=74.22 Aligned_cols=38 Identities=50% Similarity=1.282 Sum_probs=32.4
Q ss_pred ccccccccccc-------ccCcccchhhhhcC----CCCccccccccce
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 331 (337)
+..|.||++++ |||.++|..|+.++ .+||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 46899999998 99999999999988 6999999999864
No 7
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.7e-06 Score=76.49 Aligned_cols=41 Identities=41% Similarity=0.872 Sum_probs=38.4
Q ss_pred ccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeee
Q 019651 296 LCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFR 336 (337)
Q Consensus 296 ~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~ 336 (337)
.|..|..++ |.|+|+|..|...++.||+|+.++.+.+++|.
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 499999998 99999999999989999999999999999874
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-06 Score=73.26 Aligned_cols=41 Identities=37% Similarity=0.952 Sum_probs=34.1
Q ss_pred cccccccccc---------ccCcccchhhhhcC----CCCccccccccc--eEEeee
Q 019651 295 DLCVICLEQE---------CGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTFR 336 (337)
Q Consensus 295 ~~C~iC~~~~---------CgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~~~~ 336 (337)
-.|+|||+.. |||++ |..|.+.. .+||+||..|+. +.+||.
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 5899999976 99997 99999865 489999988874 667763
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.66 E-value=2.9e-05 Score=68.49 Aligned_cols=45 Identities=33% Similarity=0.815 Sum_probs=35.0
Q ss_pred CCcccccccccccc-------ccCcccchhhhhc--------------------CCCCccccccccc--eEEeee
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSR--------------------LTNCPLCRRRIDQ--VVRTFR 336 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~--------------------~~~CP~Cr~~i~~--~~~~~~ 336 (337)
......|.||++.. |||.+ |..|... ...||+||.+|.. .+++|.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 33456999999976 99987 9999853 1379999999975 667663
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00018 Score=69.05 Aligned_cols=36 Identities=42% Similarity=0.884 Sum_probs=29.2
Q ss_pred cccccccccc----------ccCcccchhhhhcC-----CCCccccccccce
Q 019651 295 DLCVICLEQE----------CGHLCCCLICSSRL-----TNCPLCRRRIDQV 331 (337)
Q Consensus 295 ~~C~iC~~~~----------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 331 (337)
..|.||++.- |+|.+.| .|-..- +.||+|++.|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence 5999999975 9999987 787653 3599999988653
No 11
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=3.7e-05 Score=76.14 Aligned_cols=41 Identities=39% Similarity=0.948 Sum_probs=33.2
Q ss_pred ccccccccccc-------ccCcccchhhhhcC---------CCCccccccccc--eEEee
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL---------TNCPLCRRRIDQ--VVRTF 335 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~---------~~CP~Cr~~i~~--~~~~~ 335 (337)
+..|+||+..+ |||.+ |..|..++ ..||+||..|.. ...++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 56899999998 99998 66997653 489999999987 54443
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=5.1e-05 Score=68.22 Aligned_cols=42 Identities=36% Similarity=0.869 Sum_probs=34.8
Q ss_pred ccccccccccc-------ccCcccchhhhhcC-------CCCcccccccc--ceEEeee
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLCRRRID--QVVRTFR 336 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~Cr~~i~--~~~~~~~ 336 (337)
.-.|-||++.+ |||++ |-.|..+. +.||+|+..|+ .+|++|-
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred ceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34899999988 99998 99998764 47899999886 5788873
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.44 E-value=6.7e-05 Score=68.75 Aligned_cols=41 Identities=32% Similarity=0.928 Sum_probs=33.2
Q ss_pred ccccccccccc---------------cccCcccchhhhhcC----CCCccccccccceEEe
Q 019651 293 MPDLCVICLEQ---------------ECGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 293 ~~~~C~iC~~~---------------~CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~ 334 (337)
....|.||++. +|+|.+ |..|...- ..||+||.++..+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 35699999985 199986 99998543 5899999999987764
No 14
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.4e-05 Score=68.82 Aligned_cols=39 Identities=36% Similarity=0.987 Sum_probs=31.6
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccce
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQV 331 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 331 (337)
+....|.+|++++ |||.+ |..|...- ..||+||.+....
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCc
Confidence 3456999999987 99997 99997643 4799999988653
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=97.23 E-value=8.7e-05 Score=66.45 Aligned_cols=39 Identities=38% Similarity=0.998 Sum_probs=30.9
Q ss_pred cccccccccc------c----------ccCcccchhhhhcC----------CCCccccccccceEE
Q 019651 294 PDLCVICLEQ------E----------CGHLCCCLICSSRL----------TNCPLCRRRIDQVVR 333 (337)
Q Consensus 294 ~~~C~iC~~~------~----------CgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~~ 333 (337)
+..|.|||+. + |+|.+ |..|.... ..||+||..+...++
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 4699999975 1 99996 99998753 249999999886553
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.15 E-value=8.9e-05 Score=49.77 Aligned_cols=30 Identities=47% Similarity=1.113 Sum_probs=23.9
Q ss_pred cccccccccc----------ccCcccchhhhhcC----CCCcccc
Q 019651 295 DLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCR 325 (337)
Q Consensus 295 ~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr 325 (337)
+.|.||++.. |||.+ |.+|.... .+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 3699999865 99997 99998764 5999997
No 17
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00079 Score=64.38 Aligned_cols=38 Identities=34% Similarity=0.892 Sum_probs=29.3
Q ss_pred CCCcccccccccccc--------------------ccCcccchhhhhc----CCCCccccccc
Q 019651 290 DRVMPDLCVICLEQE--------------------CGHLCCCLICSSR----LTNCPLCRRRI 328 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~--------------------CgH~~~C~~C~~~----~~~CP~Cr~~i 328 (337)
..+.++.|.||||.. |||.. =..|.++ ...|||||.|+
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 345678999999972 99975 4577765 36999999994
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.08 E-value=0.00022 Score=47.98 Aligned_cols=29 Identities=48% Similarity=1.375 Sum_probs=24.1
Q ss_pred cccccccc----------ccCcccchhhhhcCC----CCccccc
Q 019651 297 CVICLEQE----------CGHLCCCLICSSRLT----NCPLCRR 326 (337)
Q Consensus 297 C~iC~~~~----------CgH~~~C~~C~~~~~----~CP~Cr~ 326 (337)
|.+|+... |||.+ |..|...+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 66776644 99996 999999886 9999985
No 19
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00021 Score=74.00 Aligned_cols=40 Identities=30% Similarity=0.725 Sum_probs=33.7
Q ss_pred cccccccccc-------ccCcccchhhhhcC-----CCCccccccccc--eEEee
Q 019651 295 DLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ--VVRTF 335 (337)
Q Consensus 295 ~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~~~ 335 (337)
-.|++|.+++ |||++ |..|.... ++||.|..++.. +.+||
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3899999999 99997 99998764 699999999853 55655
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00034 Score=64.12 Aligned_cols=36 Identities=44% Similarity=1.024 Sum_probs=29.4
Q ss_pred cccccccccccc-------ccCcccchhhhhcC------CCCcccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL------TNCPLCRRRID 329 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~------~~CP~Cr~~i~ 329 (337)
-+..|.||++.+ |||++ |-.|...+ ..||+||+.+.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence 356899999998 99998 77887662 37999999875
No 21
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.84 E-value=0.00028 Score=46.09 Aligned_cols=27 Identities=44% Similarity=1.289 Sum_probs=21.3
Q ss_pred cccccccc--------ccCcccchhhhhcC----CCCccc
Q 019651 297 CVICLEQE--------CGHLCCCLICSSRL----TNCPLC 324 (337)
Q Consensus 297 C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~C 324 (337)
|.||++.. |||.+ |.+|..+. .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 78998876 99996 99998764 589988
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.30 E-value=0.0024 Score=41.81 Aligned_cols=32 Identities=50% Similarity=1.205 Sum_probs=25.3
Q ss_pred ccccccccc--------ccCcccchhhhhcC-----CCCccccccc
Q 019651 296 LCVICLEQE--------CGHLCCCLICSSRL-----TNCPLCRRRI 328 (337)
Q Consensus 296 ~C~iC~~~~--------CgH~~~C~~C~~~~-----~~CP~Cr~~i 328 (337)
.|.||++.. |||.+ |..|.... ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 478888864 99996 99998743 4799999764
No 23
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.79 E-value=0.0028 Score=61.14 Aligned_cols=39 Identities=41% Similarity=0.981 Sum_probs=31.6
Q ss_pred ccccccccccc-------ccCcccchhhhhcC------CCCccccccccceEE
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL------TNCPLCRRRIDQVVR 333 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~ 333 (337)
-..|+||-++. |||+. |..|...- ..||.||-.|.+.-+
T Consensus 369 FeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 35999999987 99996 99997543 389999999977433
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.78 E-value=0.0042 Score=61.07 Aligned_cols=39 Identities=33% Similarity=0.744 Sum_probs=31.1
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.+....|.||++.. |||.+ |..|.... ..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 34456999999865 99998 99998742 479999998764
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.49 E-value=0.0042 Score=40.68 Aligned_cols=27 Identities=52% Similarity=1.257 Sum_probs=21.7
Q ss_pred cccccccc--------ccCcccchhhhhcC------CCCccc
Q 019651 297 CVICLEQE--------CGHLCCCLICSSRL------TNCPLC 324 (337)
Q Consensus 297 C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~C 324 (337)
|.||++.. |||.+ |..|..++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 67787765 99996 99998764 379988
No 26
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.12 E-value=0.015 Score=55.30 Aligned_cols=41 Identities=41% Similarity=0.908 Sum_probs=33.0
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC------CCCccccccccceE
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL------TNCPLCRRRIDQVV 332 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~------~~CP~Cr~~i~~~~ 332 (337)
.+++..|.||-..- |+|.. |..|+-++ +.||+||..-+.++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 34556999999876 99997 99999876 58999998766544
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.08 E-value=0.0074 Score=40.17 Aligned_cols=27 Identities=52% Similarity=1.232 Sum_probs=19.5
Q ss_pred cccccccc-------ccCcccchhhhhcC--------CCCccc
Q 019651 297 CVICLEQE-------CGHLCCCLICSSRL--------TNCPLC 324 (337)
Q Consensus 297 C~iC~~~~-------CgH~~~C~~C~~~~--------~~CP~C 324 (337)
|+||++-. |||.+ |..|..+. -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 78998854 99997 99998764 169987
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.00 E-value=0.013 Score=36.78 Aligned_cols=27 Identities=48% Similarity=1.320 Sum_probs=21.3
Q ss_pred cccccccc-------ccCcccchhhhhcC-----CCCccc
Q 019651 297 CVICLEQE-------CGHLCCCLICSSRL-----TNCPLC 324 (337)
Q Consensus 297 C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~C 324 (337)
|.||++.. |||.+ |..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 67788765 99995 99998743 479987
No 29
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.60 E-value=0.016 Score=42.06 Aligned_cols=34 Identities=29% Similarity=0.805 Sum_probs=18.9
Q ss_pred cccccccccc--------ccCcccchhhhhcC--CCCcccccccc
Q 019651 295 DLCVICLEQE--------CGHLCCCLICSSRL--TNCPLCRRRID 329 (337)
Q Consensus 295 ~~C~iC~~~~--------CgH~~~C~~C~~~~--~~CP~Cr~~i~ 329 (337)
-.|.+|.+-- |.|.+ |..|...- ..||+|+.|..
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-S
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChHH
Confidence 4788998754 99997 99999765 58999998874
No 30
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.17 Score=46.98 Aligned_cols=38 Identities=32% Similarity=0.892 Sum_probs=31.0
Q ss_pred Ccccccccccccc--------ccCcccchhhhhcC------CCCccccccccc
Q 019651 292 VMPDLCVICLEQE--------CGHLCCCLICSSRL------TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~Cr~~i~~ 330 (337)
..+.+|++|-..| |||.. |+.|...- -.||.|..+...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence 3457999999988 99986 99998763 189999988763
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.44 E-value=0.014 Score=54.27 Aligned_cols=34 Identities=38% Similarity=0.838 Sum_probs=28.7
Q ss_pred cccccccccc-------ccCcccchhhhhcC----CCCcccccccc
Q 019651 295 DLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRID 329 (337)
Q Consensus 295 ~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~ 329 (337)
..|.||.+.- |||.+ |.-|...- +.||+||.+..
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHH
Confidence 4899998875 99997 99998763 59999998764
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.09 Score=54.24 Aligned_cols=37 Identities=38% Similarity=0.943 Sum_probs=29.8
Q ss_pred CCcccccccccccc------------ccCcccchhhhhcC----CCCccccccc
Q 019651 291 RVMPDLCVICLEQE------------CGHLCCCLICSSRL----TNCPLCRRRI 328 (337)
Q Consensus 291 ~~~~~~C~iC~~~~------------CgH~~~C~~C~~~~----~~CP~Cr~~i 328 (337)
......|.||.+.- |+|.+ +..|..+- ..||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 34467999999853 99997 89998764 6999999944
No 33
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.16 E-value=0.025 Score=40.44 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.9
Q ss_pred ccccccccc-------ccCcccchhhhhcC----CCCcccccccc
Q 019651 296 LCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRID 329 (337)
Q Consensus 296 ~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~ 329 (337)
.|.||++-. |||.+ |..|..+. ..||+|+.+++
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence 588888654 99997 99998765 48999999984
No 34
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.96 E-value=0.024 Score=53.82 Aligned_cols=39 Identities=33% Similarity=0.879 Sum_probs=31.3
Q ss_pred CCcccccccccccc------c--cCcccchhhhhcC-CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE------C--GHLCCCLICSSRL-TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~------C--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 330 (337)
..+-..|+||++.- | ||+. |..|..++ .+||.||.+|..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHla-CssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLA-CSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEe-hhhhhhhhcccCCcccccccc
Confidence 34455999999865 6 7997 99999555 699999999984
No 35
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.94 E-value=0.027 Score=39.55 Aligned_cols=36 Identities=33% Similarity=0.807 Sum_probs=29.5
Q ss_pred ccccccccccc-------ccCcccchhhhhc--CCCCccccccccc
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSR--LTNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~--~~~CP~Cr~~i~~ 330 (337)
...|..|.... |||++ |..|... .+-||+|..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 35888888875 99998 9999865 4689999998864
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=93.86 E-value=0.024 Score=42.41 Aligned_cols=20 Identities=50% Similarity=1.291 Sum_probs=15.1
Q ss_pred ccCcccchhhhhcC----CCCcccc
Q 019651 305 CGHLCCCLICSSRL----TNCPLCR 325 (337)
Q Consensus 305 CgH~~~C~~C~~~~----~~CP~Cr 325 (337)
|||.+ -..|..+- ..||+||
T Consensus 50 C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 50 CGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp TSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 99997 67887642 5899998
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.85 E-value=0.033 Score=54.84 Aligned_cols=37 Identities=32% Similarity=0.834 Sum_probs=29.1
Q ss_pred Ccccccccccccc-----------ccCcccchhhhhcC--CCCcccccccc
Q 019651 292 VMPDLCVICLEQE-----------CGHLCCCLICSSRL--TNCPLCRRRID 329 (337)
Q Consensus 292 ~~~~~C~iC~~~~-----------CgH~~~C~~C~~~~--~~CP~Cr~~i~ 329 (337)
.+...|+||+++. |.|-+.| .|..+- ..||+||---.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhhhcC
Confidence 3456999999987 9999977 677665 48999996443
No 38
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.031 Score=52.41 Aligned_cols=35 Identities=31% Similarity=0.801 Sum_probs=28.6
Q ss_pred ccccccccccc----------ccCcccchhhhhcC-----CCCcccccccc
Q 019651 294 PDLCVICLEQE----------CGHLCCCLICSSRL-----TNCPLCRRRID 329 (337)
Q Consensus 294 ~~~C~iC~~~~----------CgH~~~C~~C~~~~-----~~CP~Cr~~i~ 329 (337)
.-.|.|||++- |.|.+ =..|..+- .+||+||.+|.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 35999999976 99998 46888763 38999999875
No 39
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.074 Score=50.88 Aligned_cols=38 Identities=26% Similarity=0.739 Sum_probs=30.9
Q ss_pred Ccccccccccccc-------ccCcccchhhhhc----CCCCccccccccc
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSR----LTNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 330 (337)
.+++.|+||+..| |+|.. |+.|..+ .+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 3457999999998 99997 9999865 2578888887764
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.022 Score=54.49 Aligned_cols=37 Identities=32% Similarity=0.825 Sum_probs=30.3
Q ss_pred ccccccccccc--------ccCcccchhhhhcC-----CCCccccccccce
Q 019651 294 PDLCVICLEQE--------CGHLCCCLICSSRL-----TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~--------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 331 (337)
+-.|.||++-- |.|.+ |.+|.++- ..||-||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 45999999844 99998 99999863 4899999987654
No 41
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.19 Score=48.31 Aligned_cols=75 Identities=16% Similarity=0.033 Sum_probs=55.8
Q ss_pred ccceEEEEeeecCCCeEEEEEEEEECCCcceEEeCCCCCCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 019651 163 MLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLI 239 (337)
Q Consensus 163 ~~g~r~~E~~L~~G~~ltvvGe~~~d~~G~l~i~~p~~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll 239 (337)
+.|-+|.+... +|+-|+-+|.+... .+-..|.-...++|+||-..+|..+++.++..+..+-...-+++.-+-++
T Consensus 209 ~~g~~~v~~s~-~d~LIsr~g~~s~~-~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~~rae~~ 283 (355)
T KOG1571|consen 209 MQGPLYVTKSA-ADRLISREGDLSFF-VKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLATVRAELL 283 (355)
T ss_pred ccCcceeeccc-hhhHHHhhccceee-eeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhhheeeee
Confidence 56889999999 99999999998765 44445666777899999999999999877777666544444444433333
No 42
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.02 E-value=0.056 Score=37.02 Aligned_cols=23 Identities=35% Similarity=0.959 Sum_probs=12.4
Q ss_pred ccCcccchhhhhcCC-----CCccccccc
Q 019651 305 CGHLCCCLICSSRLT-----NCPLCRRRI 328 (337)
Q Consensus 305 CgH~~~C~~C~~~~~-----~CP~Cr~~i 328 (337)
||+.. |..|...+. .||.||.+.
T Consensus 20 Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 20 CGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 99997 999987653 799999874
No 43
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=91.74 E-value=0.037 Score=37.05 Aligned_cols=13 Identities=46% Similarity=1.203 Sum_probs=10.7
Q ss_pred ccCcccchhhhhcC
Q 019651 305 CGHLCCCLICSSRL 318 (337)
Q Consensus 305 CgH~~~C~~C~~~~ 318 (337)
|||.+ |.+|..++
T Consensus 19 CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 19 CGHVF-CKDCLQKL 31 (43)
T ss_dssp SS-EE-EHHHHHHH
T ss_pred CccHH-HHHHHHHH
Confidence 99997 99999876
No 44
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=91.43 E-value=0.056 Score=51.47 Aligned_cols=37 Identities=30% Similarity=0.765 Sum_probs=30.5
Q ss_pred cccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
+-..|-||++-. |+|.+ |.-|.... +.||.|+.+++.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 345899999854 99997 99998764 599999998864
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.11 Score=50.37 Aligned_cols=40 Identities=35% Similarity=0.773 Sum_probs=31.8
Q ss_pred cccccccccccc---------------ccCcccchhhhhc-----------CCCCccccccccceEE
Q 019651 293 MPDLCVICLEQE---------------CGHLCCCLICSSR-----------LTNCPLCRRRIDQVVR 333 (337)
Q Consensus 293 ~~~~C~iC~~~~---------------CgH~~~C~~C~~~-----------~~~CP~Cr~~i~~~~~ 333 (337)
.+..|-|||++- |.|.. |..|..+ .+.||+||.+...++.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 356999999963 99997 9999854 2589999999876654
No 46
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.56 Score=44.65 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=30.5
Q ss_pred CCCcccccccccccc--------ccCcccchhhhhcC----CCCccccccc--cceEEee
Q 019651 290 DRVMPDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRI--DQVVRTF 335 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i--~~~~~~~ 335 (337)
...+...|++|+... .|-+ .|..|.-+. ..||+-.-|+ +..+++|
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 455667999999865 4555 599999764 5899854443 4455544
No 47
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=0.87 Score=37.88 Aligned_cols=37 Identities=38% Similarity=0.967 Sum_probs=26.2
Q ss_pred Ccccccccccccc----ccCccc------chhhhhcCC--------CCccccccc
Q 019651 292 VMPDLCVICLEQE----CGHLCC------CLICSSRLT--------NCPLCRRRI 328 (337)
Q Consensus 292 ~~~~~C~iC~~~~----CgH~~~------C~~C~~~~~--------~CP~Cr~~i 328 (337)
.++..|-||.... |||.|. |..|..++. .|-.|+...
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 4456999999887 999974 666665541 577777543
No 48
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.25 Score=46.30 Aligned_cols=40 Identities=28% Similarity=0.793 Sum_probs=31.8
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccceE
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQVV 332 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 332 (337)
..+..|-||..-. |+|.+ |..|+.+- ..|++|.+.+.+..
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence 3455799997654 99997 99999763 48999999988754
No 49
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=87.87 E-value=0.25 Score=37.98 Aligned_cols=24 Identities=29% Similarity=0.814 Sum_probs=17.2
Q ss_pred ccCcccchhhhhc-------CCCCcccccccc
Q 019651 305 CGHLCCCLICSSR-------LTNCPLCRRRID 329 (337)
Q Consensus 305 CgH~~~C~~C~~~-------~~~CP~Cr~~i~ 329 (337)
|+|.+ =..|..+ -..||+||++..
T Consensus 52 C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 52 CSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 88886 4577543 148999999764
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=86.18 E-value=0.35 Score=42.84 Aligned_cols=40 Identities=33% Similarity=0.788 Sum_probs=30.7
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccceE
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQVV 332 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 332 (337)
..+-.|-||...- |||.+ |..|+..- ..|-+|.....+..
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred CCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence 3456999998754 99997 99999753 58999987765544
No 51
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.98 E-value=4.7 Score=29.08 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019651 244 IRCILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 244 ~r~~~~~~~~~~~~~~~~~~~~ 265 (337)
.++++.+++.+++++++++++.
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777776666544
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.85 E-value=0.24 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=23.1
Q ss_pred ccCcccchhhhhcC----CCCccccccccceEE
Q 019651 305 CGHLCCCLICSSRL----TNCPLCRRRIDQVVR 333 (337)
Q Consensus 305 CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 333 (337)
|+|.+ |..|.... ..||+||.-+..++.
T Consensus 144 c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 144 TAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred ccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 99997 99998765 489999998877654
No 53
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=83.14 E-value=0.43 Score=53.33 Aligned_cols=39 Identities=33% Similarity=1.058 Sum_probs=28.9
Q ss_pred Ccccccccccccc----------ccCcccchhhhhcC--------------CCCccccccccce
Q 019651 292 VMPDLCVICLEQE----------CGHLCCCLICSSRL--------------TNCPLCRRRIDQV 331 (337)
Q Consensus 292 ~~~~~C~iC~~~~----------CgH~~~C~~C~~~~--------------~~CP~Cr~~i~~~ 331 (337)
+.++.|+||+... |+|++. ..|..++ -.||+|.++|.-.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFH-lqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFH-LQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchh-HHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3456999999976 999974 4555432 2799999999753
No 54
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=83.10 E-value=9.5 Score=27.15 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 222 RWYKYASFGLTIFGAFLIAKRVIRCILQRKRRWE 255 (337)
Q Consensus 222 ~~~~~~~i~~~~~G~~ll~~~~~r~~~~~~~~~~ 255 (337)
+...+..+++.+.|.+++++.++.+++..|.+++
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777888888888888866544443
No 55
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=0.83 Score=45.20 Aligned_cols=38 Identities=39% Similarity=0.886 Sum_probs=29.8
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
..+-.|.||+... |||.. |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 3456999998865 99997 88895443 589999998764
No 56
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=80.18 E-value=3.3 Score=33.74 Aligned_cols=34 Identities=24% Similarity=0.615 Sum_probs=22.0
Q ss_pred cccccccccccc------------ccCcccchhhhhcCC-----CCcccccc
Q 019651 293 MPDLCVICLEQE------------CGHLCCCLICSSRLT-----NCPLCRRR 327 (337)
Q Consensus 293 ~~~~C~iC~~~~------------CgH~~~C~~C~~~~~-----~CP~Cr~~ 327 (337)
....|.+|.... |+|.+ |..|....+ .|.+|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 356999998753 77776 788876542 58888653
No 57
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=79.58 E-value=4.5 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 019651 231 LTIFGAFLIAKRVIRCILQRK 251 (337)
Q Consensus 231 ~~~~G~~ll~~~~~r~~~~~~ 251 (337)
.+++|+++++..+||.|.+|+
T Consensus 17 Vglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888887654
No 58
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=1 Score=42.68 Aligned_cols=37 Identities=32% Similarity=0.815 Sum_probs=27.9
Q ss_pred ccccccccccc--------ccCcccchhhhhcC--CCCccccccccce
Q 019651 294 PDLCVICLEQE--------CGHLCCCLICSSRL--TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~--------CgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 331 (337)
-..|.-|---- |.|++ |.+||..- +.||.|--+|..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHH
Confidence 45777774322 99997 99999865 5999998777643
No 59
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.09 E-value=0.87 Score=30.99 Aligned_cols=37 Identities=24% Similarity=0.749 Sum_probs=20.7
Q ss_pred ccccccccc-----ccCcccchhhhhcC----CCCccccccccceE
Q 019651 296 LCVICLEQE-----CGHLCCCLICSSRL----TNCPLCRRRIDQVV 332 (337)
Q Consensus 296 ~C~iC~~~~-----CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 332 (337)
.|+-|.-.. |.--.+|..|...| ..||||..+....+
T Consensus 4 nCKsCWf~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 578887665 87555799999887 38999999887654
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=75.81 E-value=1.5 Score=40.84 Aligned_cols=37 Identities=19% Similarity=0.483 Sum_probs=30.6
Q ss_pred cccccccccccc-----------ccCcccchhhhhcCC---CCccccccccc
Q 019651 293 MPDLCVICLEQE-----------CGHLCCCLICSSRLT---NCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-----------CgH~~~C~~C~~~~~---~CP~Cr~~i~~ 330 (337)
..-.|+|..... |||++ +..+...++ .||+|-.+++.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 345899988654 99997 899999887 79999999864
No 61
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.23 E-value=1.2 Score=37.12 Aligned_cols=37 Identities=32% Similarity=0.786 Sum_probs=28.7
Q ss_pred ccccccccccc-----------ccCcccchhhhhcC-------CCCccccccccce
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSRL-------TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~~-------~~CP~Cr~~i~~~ 331 (337)
--+|-||.+.. ||-. .|..|...+ +.||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 35899999854 7744 599998765 5899999887654
No 62
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=1 Score=45.15 Aligned_cols=37 Identities=30% Similarity=0.759 Sum_probs=26.3
Q ss_pred cccccccccccc------------------------ccCcccchhhhhc-C---C-CCccccccccc
Q 019651 293 MPDLCVICLEQE------------------------CGHLCCCLICSSR-L---T-NCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~------------------------CgH~~~C~~C~~~-~---~-~CP~Cr~~i~~ 330 (337)
....|+|||+.- |.|.. =..|..+ | + .||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 345899999853 66665 4567665 2 3 79999998753
No 63
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=74.41 E-value=25 Score=32.73 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH----------HHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019651 209 TIDELLENLGKWARWYKYASFGLTIFGAFLI----------AKRVIRCILQRKR--RWELRRRVLAAAA 265 (337)
Q Consensus 209 ~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll----------~~~~~r~~~~~~~--~~~~~~~~~~~~~ 265 (337)
..+++.+.++..+.++.|.-|++.++.+.+. ++...|||+.+++ ++..++...|+++
T Consensus 166 ~~~~~~~~lra~SQ~lGW~LI~~~~i~a~l~~c~~rC~Sp~s~lQ~kyW~~Y~~~E~~lF~~~~~eHA~ 234 (251)
T PF14798_consen 166 ERDEVLRYLRAQSQVLGWILIALVIILAFLVTCLRRCFSPVSFLQLKYWSIYIEKEQELFDETAKEHAR 234 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888777766655553 3555677765443 4444455555544
No 64
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=74.28 E-value=23 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 234 FGAFLIAKRVIRCILQRKRRWELRRRVL 261 (337)
Q Consensus 234 ~G~~ll~~~~~r~~~~~~~~~~~~~~~~ 261 (337)
+.+++++|.++|-++.+++-.+++++.+
T Consensus 13 v~~~i~~y~~~k~~ka~~~~~kL~~en~ 40 (87)
T PF10883_consen 13 VVALILAYLWWKVKKAKKQNAKLQKENE 40 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666676665555444444333
No 65
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.17 E-value=4.6 Score=39.41 Aligned_cols=9 Identities=44% Similarity=1.339 Sum_probs=8.1
Q ss_pred CCccccccc
Q 019651 320 NCPLCRRRI 328 (337)
Q Consensus 320 ~CP~Cr~~i 328 (337)
.||.||+++
T Consensus 342 ~CPtCRa~F 350 (358)
T PF10272_consen 342 PCPTCRAKF 350 (358)
T ss_pred CCCCCcccc
Confidence 799999985
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=71.84 E-value=1.3 Score=46.77 Aligned_cols=35 Identities=37% Similarity=1.040 Sum_probs=28.8
Q ss_pred cccccccccc------ccCcccchhhhhcC------CCCccccccccc
Q 019651 295 DLCVICLEQE------CGHLCCCLICSSRL------TNCPLCRRRIDQ 330 (337)
Q Consensus 295 ~~C~iC~~~~------CgH~~~C~~C~~~~------~~CP~Cr~~i~~ 330 (337)
..|.+|++.. |+|.. |.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCDLDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccccccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence 6899999944 99997 99998764 379999988753
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.26 E-value=21 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.781 Sum_probs=28.7
Q ss_pred CCcccccccccccc-----------------ccCcccchhhhhc------CCCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-----------------CGHLCCCLICSSR------LTNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-----------------CgH~~~C~~C~~~------~~~CP~Cr~~i~~ 330 (337)
..+++.|.||-.+- |+|.+ =..|..- ...||-|...|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 44567999997643 99997 3566543 3589999998864
No 68
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=70.77 E-value=2.2 Score=42.29 Aligned_cols=42 Identities=33% Similarity=0.733 Sum_probs=32.6
Q ss_pred CCcccccccccccc--------ccCcccchhhhhcC----CCCccccccccceEE
Q 019651 291 RVMPDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQVVR 333 (337)
Q Consensus 291 ~~~~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 333 (337)
..++..|.+|..-- |||.+ |..|.... ..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhhc
Confidence 34457999999854 99998 99998764 489999988775443
No 69
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.81 E-value=1.5 Score=47.33 Aligned_cols=36 Identities=33% Similarity=0.738 Sum_probs=24.6
Q ss_pred ccccccccccc--------------ccCcccchhhhhc------CCCCccccccccc
Q 019651 294 PDLCVICLEQE--------------CGHLCCCLICSSR------LTNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~--------------CgH~~~C~~C~~~------~~~CP~Cr~~i~~ 330 (337)
..+|.||++-- |.|-+ =..|.-+ -.+||+||..|+-
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence 35899999732 66665 3456433 2599999988763
No 70
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.80 E-value=2.5 Score=38.81 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=29.1
Q ss_pred cccccccccc-----------ccCcccchhhhhcC----CCCccccccccc
Q 019651 295 DLCVICLEQE-----------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 295 ~~C~iC~~~~-----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
-.|++|.+.- |||++ |.+|..++ ..||+|-.+...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 3899998854 99997 99999987 379999888764
No 71
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=67.24 E-value=6.9 Score=29.85 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019651 244 IRCILQRKRRWELRRRVLAAA 264 (337)
Q Consensus 244 ~r~~~~~~~~~~~~~~~~~~~ 264 (337)
++.|++.+++++..+.+++.+
T Consensus 27 ~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp ------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 455555555566666555554
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.25 E-value=4.7 Score=39.72 Aligned_cols=23 Identities=35% Similarity=0.882 Sum_probs=19.9
Q ss_pred ccccccccccc----------ccCcccchhhhhc
Q 019651 294 PDLCVICLEQE----------CGHLCCCLICSSR 317 (337)
Q Consensus 294 ~~~C~iC~~~~----------CgH~~~C~~C~~~ 317 (337)
.-.|.||++.. |+|+. |..|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHH
Confidence 45899999977 99997 9999875
No 73
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=62.59 E-value=3 Score=27.39 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=11.3
Q ss_pred eechhHHHHHHHHHHHHhhcc
Q 019651 3 SWGGISCCLSGAALYLLGRSS 23 (337)
Q Consensus 3 ~~g~~~~~~~g~~~~~~~~~~ 23 (337)
.+|++ .++.++++|+.||++
T Consensus 20 PV~vI-~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 20 PVGVI-IIVLGAFLFFWYRRK 39 (40)
T ss_pred chHHH-HHHHHHHhheEEecc
Confidence 34566 566666666455553
No 74
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=62.29 E-value=34 Score=28.83 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=23.7
Q ss_pred EEccCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 019651 204 YVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLI 239 (337)
Q Consensus 204 ~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll 239 (337)
..+..+..++..........+..++++.+++..++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~v~~~i~ 135 (154)
T PF09835_consen 100 DWSLMHWSDLLESLWEFGLPFLLGSLILGIVLGIIS 135 (154)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777776655444
No 75
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.19 E-value=49 Score=23.61 Aligned_cols=14 Identities=21% Similarity=0.219 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 019651 245 RCILQRKRRWELRR 258 (337)
Q Consensus 245 r~~~~~~~~~~~~~ 258 (337)
-.+...+.+++..+
T Consensus 39 ~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 39 SLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 76
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=58.69 E-value=3.3 Score=38.88 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=11.5
Q ss_pred HHHHHHHH-HHHhHHhHHHHHHHH
Q 019651 218 GKWARWYK-YASFGLTIFGAFLIA 240 (337)
Q Consensus 218 ~~~a~~~~-~~~i~~~~~G~~ll~ 240 (337)
+++.++|+ .++++.|+++++||+
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~ 230 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLS 230 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHH
Confidence 33333444 334456666666664
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.96 E-value=13 Score=30.66 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 019651 216 NLGKWARWYKYASFGLTIFGAFLIAKRVI 244 (337)
Q Consensus 216 ~~~~~a~~~~~~~i~~~~~G~~ll~~~~~ 244 (337)
++...+-.+-.+++++|++|++||.+.++
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHH
Confidence 33334446677888888888777654443
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.73 E-value=9.9 Score=35.97 Aligned_cols=31 Identities=35% Similarity=0.823 Sum_probs=23.6
Q ss_pred cccccccc---cc-----ccCcccchhhhhc-----CCCCccccc
Q 019651 295 DLCVICLE---QE-----CGHLCCCLICSSR-----LTNCPLCRR 326 (337)
Q Consensus 295 ~~C~iC~~---~~-----CgH~~~C~~C~~~-----~~~CP~Cr~ 326 (337)
..|..|.. ++ |+|.+ |.+|... -..||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 57887754 33 99997 9999874 248999976
No 79
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=57.57 E-value=4 Score=41.46 Aligned_cols=34 Identities=26% Similarity=0.836 Sum_probs=26.9
Q ss_pred ccccccccccc-------ccCcccchhhhhcC---------CCCccccccc
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL---------TNCPLCRRRI 328 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~---------~~CP~Cr~~i 328 (337)
...|.+|.+.. |.|.+ |.-|.... -+||.|-.+.
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 45999999976 99997 99998432 3899997654
No 80
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=56.58 E-value=26 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 235 GAFLIAKRVIRCILQRKRRWELRRRVLA 262 (337)
Q Consensus 235 G~~ll~~~~~r~~~~~~~~~~~~~~~~~ 262 (337)
+++++++..+|++++++-+++..+++++
T Consensus 33 ~~~~~~~~~~r~~~~~~yrr~Al~~L~~ 60 (146)
T PF14316_consen 33 LLILLLWRLWRRWRRNRYRREALRELAQ 60 (146)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3344555666666654444444444443
No 81
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.09 E-value=4.9 Score=36.63 Aligned_cols=25 Identities=40% Similarity=0.999 Sum_probs=19.9
Q ss_pred ccccccCcccchhhhhcC----CCCccccc
Q 019651 301 LEQECGHLCCCLICSSRL----TNCPLCRR 326 (337)
Q Consensus 301 ~~~~CgH~~~C~~C~~~~----~~CP~Cr~ 326 (337)
..-+|||.+ |..|...+ ..||.||.
T Consensus 27 ~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 27 VLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 334499997 99999875 38999994
No 82
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=54.84 E-value=2.8 Score=39.62 Aligned_cols=34 Identities=44% Similarity=1.001 Sum_probs=23.9
Q ss_pred cccccccccc----------ccCcccchhhhhc----------------------C-----CCCcccccccc
Q 019651 295 DLCVICLEQE----------CGHLCCCLICSSR----------------------L-----TNCPLCRRRID 329 (337)
Q Consensus 295 ~~C~iC~~~~----------CgH~~~C~~C~~~----------------------~-----~~CP~Cr~~i~ 329 (337)
..|+||+-.. |-|...| .|..+ + ..||+||.+|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~-~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHF-ACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4788888643 9999765 45432 1 16999999885
No 83
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=51.47 E-value=11 Score=36.07 Aligned_cols=41 Identities=7% Similarity=-0.211 Sum_probs=33.9
Q ss_pred ccccccccccc-------ccCcccchhhhhcC--CCCccccccccceEEe
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL--TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~--~~CP~Cr~~i~~~~~~ 334 (337)
...|.+|-.+- |+|...|.+|+..- ..||.|.......++|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 45899998876 99999999999743 4999999887776665
No 84
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=49.85 E-value=7 Score=28.87 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=23.5
Q ss_pred ccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
.-.|+||.+-. |||.+ +..|..+. ..||+|+.+++.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35899998754 99886 88887542 479999999875
No 85
>PHA03096 p28-like protein; Provisional
Probab=48.45 E-value=6.3 Score=37.31 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.0
Q ss_pred cccccccccc---------------ccCcccchhhhhc
Q 019651 295 DLCVICLEQE---------------CGHLCCCLICSSR 317 (337)
Q Consensus 295 ~~C~iC~~~~---------------CgH~~~C~~C~~~ 317 (337)
..|-||+++. |.|.+ |..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~ 215 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKI 215 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHH
Confidence 5899999976 99997 9999864
No 86
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=48.42 E-value=1e+02 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=10.9
Q ss_pred HHHHHHhHHhHHHHHHH
Q 019651 223 WYKYASFGLTIFGAFLI 239 (337)
Q Consensus 223 ~~~~~~i~~~~~G~~ll 239 (337)
.+.|++++..++.+++|
T Consensus 17 fyVWlA~~~tll~l~~l 33 (67)
T COG3114 17 FYVWLAVGMTLLPLAVL 33 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777766666555
No 87
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=47.69 E-value=43 Score=28.60 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=15.3
Q ss_pred HHHhHHhHHHHHHHHHHHHHHH
Q 019651 226 YASFGLTIFGAFLIAKRVIRCI 247 (337)
Q Consensus 226 ~~~i~~~~~G~~ll~~~~~r~~ 247 (337)
.++++.|++|+++|+|-+|=.+
T Consensus 8 ~~~~~ag~a~~~flgYciYFD~ 29 (148)
T TIGR00985 8 NVVIAAGIAAAAFLGYAIYFDY 29 (148)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4456667778888888776544
No 88
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=47.60 E-value=32 Score=24.20 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=24.2
Q ss_pred EeeecCCCeEEEEEEEEECCCcceEEeCCC
Q 019651 170 GRLLPTGTSLTVVGEAVKDDIGTVRIQRPH 199 (337)
Q Consensus 170 E~~L~~G~~ltvvGe~~~d~~G~l~i~~p~ 199 (337)
...+++|+.+++.|.+... +|.+.|..|.
T Consensus 43 ~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 43 KKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 4568999999999998664 6788999887
No 89
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=47.59 E-value=6.4 Score=37.50 Aligned_cols=42 Identities=10% Similarity=0.275 Sum_probs=33.6
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccceEEe
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~~ 334 (337)
..-.|.+|+.+. |+|-++|..|+.+. ..||+|...+.....+
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 345899999998 99999999987655 4699998877665544
No 90
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=47.42 E-value=11 Score=29.31 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=29.3
Q ss_pred ccccccccccc--ccCcccchhhhhcCCCCccccccccc
Q 019651 294 PDLCVICLEQE--CGHLCCCLICSSRLTNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~--CgH~~~C~~C~~~~~~CP~Cr~~i~~ 330 (337)
...|.+|.... =||-. |..||-+-..|.+|-..|.+
T Consensus 44 ~~~C~~CK~~v~q~g~~Y-Cq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQPGAKY-CQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccCCCcc-ChhhhcccCcccccCCeecc
Confidence 35899999887 35444 89999999999999998843
No 91
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=47.30 E-value=14 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=17.5
Q ss_pred eechhHHHHHHHHHHHHhhcchh
Q 019651 3 SWGGISCCLSGAALYLLGRSSGR 25 (337)
Q Consensus 3 ~~g~~~~~~~g~~~~~~~~~~~~ 25 (337)
++.+|+.+++|+++|.+|.+++.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 45667788889999988887653
No 92
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.81 E-value=9 Score=24.09 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=11.4
Q ss_pred CCCccccccccceEE
Q 019651 319 TNCPLCRRRIDQVVR 333 (337)
Q Consensus 319 ~~CP~Cr~~i~~~~~ 333 (337)
..||+|.++-..+.+
T Consensus 19 ~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 19 EKCPICGAPKEKFEE 33 (34)
T ss_pred CcCcCCCCchHHcEE
Confidence 489999988766554
No 93
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=45.26 E-value=27 Score=31.73 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhH
Q 019651 200 KGPFYVSPKTIDELLENLGKWARWYKYASFGLTI 233 (337)
Q Consensus 200 ~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~ 233 (337)
+.||+-.....++...++...++.|+.+++++++
T Consensus 17 ~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 17 ETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489888888888888888888877655544333
No 94
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=44.80 E-value=54 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.3
Q ss_pred CcceEEeCCCCCCeEEccCCHHHHHHHHHHH
Q 019651 190 IGTVRIQRPHKGPFYVSPKTIDELLENLGKW 220 (337)
Q Consensus 190 ~G~l~i~~p~~gpf~lS~~~~~~L~~~~~~~ 220 (337)
..-+.|.... +.|+||+.+++++++.++..
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKKR 99 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHhc
Confidence 3456665444 78999999999999988764
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.79 E-value=30 Score=28.50 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=17.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 019651 224 YKYASFGLTIFGAFLIAKRVIRCILQRK 251 (337)
Q Consensus 224 ~~~~~i~~~~~G~~ll~~~~~r~~~~~~ 251 (337)
-...+|+||+++.+++...++-|+..|+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788887766666565666665443
No 96
>PRK00523 hypothetical protein; Provisional
Probab=43.75 E-value=76 Score=23.65 Aligned_cols=28 Identities=11% Similarity=-0.103 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 019651 221 ARWYKYASFGLTIFGAFLIAKRVIRCIL 248 (337)
Q Consensus 221 a~~~~~~~i~~~~~G~~ll~~~~~r~~~ 248 (337)
..+|..+.+++.++|+++-.+...|+.+
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555555555553
No 97
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=43.47 E-value=1e+02 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 242 RVIRCILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 242 ~~~r~~~~~~~~~~~~~~~~~~~~ 265 (337)
+.+..+..++++.+.++.++...+
T Consensus 84 we~Cr~~r~~~~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 84 WEYCRYNRRKERQQMKRAVEAMQE 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444433
No 98
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=7.8 Score=36.56 Aligned_cols=10 Identities=40% Similarity=1.182 Sum_probs=8.4
Q ss_pred CCcccccccc
Q 019651 320 NCPLCRRRID 329 (337)
Q Consensus 320 ~CP~Cr~~i~ 329 (337)
.||.||+.+-
T Consensus 356 ~cp~cr~~fc 365 (381)
T KOG3899|consen 356 QCPTCRKNFC 365 (381)
T ss_pred CCcchhhceE
Confidence 8999998763
No 99
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.88 E-value=17 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.329 Sum_probs=5.7
Q ss_pred HHHHhhcchhhhH
Q 019651 16 LYLLGRSSGRDAE 28 (337)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (337)
+++++++++|+.+
T Consensus 16 ~~~~~~~~rRR~r 28 (130)
T PF12273_consen 16 LFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444444
No 100
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=42.87 E-value=44 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=22.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 019651 224 YKYASFGLTIFGAFLIAKRVIRCILQRK 251 (337)
Q Consensus 224 ~~~~~i~~~~~G~~ll~~~~~r~~~~~~ 251 (337)
.-|++.++.++|.+++...++-||+-+|
T Consensus 193 ~~wla~~Lm~~G~fI~irsi~dY~rVKR 220 (233)
T PF10176_consen 193 NPWLAYILMAFGWFIFIRSIIDYWRVKR 220 (233)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477778889999999888888886654
No 101
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=42.76 E-value=6.2 Score=27.11 Aligned_cols=31 Identities=32% Similarity=0.807 Sum_probs=11.4
Q ss_pred ccccccccc--------ccCcccchhhhhcC--------CCCcccccc
Q 019651 296 LCVICLEQE--------CGHLCCCLICSSRL--------TNCPLCRRR 327 (337)
Q Consensus 296 ~C~iC~~~~--------CgH~~~C~~C~~~~--------~~CP~Cr~~ 327 (337)
.|++.+.+- |.|+- |.+=..-+ =+||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 466666554 99994 43321111 179999874
No 102
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=41.29 E-value=1.5e+02 Score=22.96 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 232 TIFGAFLIAKRVIRCILQRKRRWELRR 258 (337)
Q Consensus 232 ~~~G~~ll~~~~~r~~~~~~~~~~~~~ 258 (337)
+++++++++..+|-+|+-++.+++.++
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~k 34 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAK 34 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544555544444444333
No 103
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=40.70 E-value=11 Score=29.38 Aligned_cols=34 Identities=26% Similarity=0.689 Sum_probs=28.1
Q ss_pred cccccccccccc---ccCcccchhhhhcCCCCcccccc
Q 019651 293 MPDLCVICLEQE---CGHLCCCLICSSRLTNCPLCRRR 327 (337)
Q Consensus 293 ~~~~C~iC~~~~---CgH~~~C~~C~~~~~~CP~Cr~~ 327 (337)
.+..|..|..+. =-|.. |..|+.....|+-|..+
T Consensus 54 ~p~kC~~C~qktVk~AYh~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 54 QPKKCNKCQQKTVKHAYHVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CCccccccccchHHHHHHHH-HHHHHHhhccCcccCCC
Confidence 456888888877 66775 99999999999999765
No 104
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=38.95 E-value=1.2e+02 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=5.7
Q ss_pred HHHHHhHHhHHHH
Q 019651 224 YKYASFGLTIFGA 236 (337)
Q Consensus 224 ~~~~~i~~~~~G~ 236 (337)
+.|.+-+++++.+
T Consensus 7 yVW~sYg~t~l~l 19 (45)
T TIGR03141 7 YVWLAYGITALVL 19 (45)
T ss_pred HHHHHHHHHHHHH
Confidence 3445544444333
No 105
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=38.71 E-value=39 Score=30.55 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=28.2
Q ss_pred CCCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHH
Q 019651 200 KGPFYVSPKTIDELLENLGKWARWYKYASFGLTIF 234 (337)
Q Consensus 200 ~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~ 234 (337)
+.||+=.....++.+..+..+++.|++++++++++
T Consensus 8 ~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 8 DNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888888899999999999899999888754444
No 106
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.25 E-value=11 Score=37.05 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=0.0
Q ss_pred CCccccccccc---eEEee
Q 019651 320 NCPLCRRRIDQ---VVRTF 335 (337)
Q Consensus 320 ~CP~Cr~~i~~---~~~~~ 335 (337)
.||.|-.++.. .++++
T Consensus 392 ~CPFCa~~L~g~~g~vrLi 410 (416)
T PF04710_consen 392 ACPFCATPLDGEQGYVRLI 410 (416)
T ss_dssp -------------------
T ss_pred cCCcccCcccCCCCceEEE
Confidence 79999999875 45543
No 107
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=36.48 E-value=47 Score=30.66 Aligned_cols=38 Identities=5% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCCCCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHH
Q 019651 197 RPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIF 234 (337)
Q Consensus 197 ~p~~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~ 234 (337)
++...||+=.....++-+..+..+++.|++++++.+++
T Consensus 28 ~~~~~~Y~~a~~~we~r~~~~~~~~~~w~v~a~~~~~i 65 (250)
T PRK13887 28 GETENPYLNARRTWNDHVGGVVSQRQTWQVVGILSLLI 65 (250)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444898888888887777777777777655543333
No 108
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=36.42 E-value=1e+02 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=17.6
Q ss_pred Ccccccccccccc---------ccCcccchhhhh
Q 019651 292 VMPDLCVICLEQE---------CGHLCCCLICSS 316 (337)
Q Consensus 292 ~~~~~C~iC~~~~---------CgH~~~C~~C~~ 316 (337)
.+...|.+|...- |||.+ -..|..
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 4456899998765 89876 667764
No 109
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=36.32 E-value=38 Score=28.01 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=13.6
Q ss_pred HHHHHhHHhHHHHHHHHHHH
Q 019651 224 YKYASFGLTIFGAFLIAKRV 243 (337)
Q Consensus 224 ~~~~~i~~~~~G~~ll~~~~ 243 (337)
.++++.++..+|+.+|+.-+
T Consensus 80 ~~~~G~vlLs~GLmlL~~~a 99 (129)
T PF15099_consen 80 ISIFGPVLLSLGLMLLACSA 99 (129)
T ss_pred hhhehHHHHHHHHHHHHhhh
Confidence 45677777777877776553
No 110
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=36.28 E-value=88 Score=22.58 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.5
Q ss_pred EEeeecCCCeEEEEEEEEECC-CcceEE
Q 019651 169 IGRLLPTGTSLTVVGEAVKDD-IGTVRI 195 (337)
Q Consensus 169 ~E~~L~~G~~ltvvGe~~~d~-~G~l~i 195 (337)
....|.+|+.|.+.|.+..+. +|.+.|
T Consensus 42 ~~~~l~~g~~v~v~g~v~~~~~~~~~~l 69 (78)
T cd04489 42 LGFPLEEGMEVLVRGKVSFYEPRGGYQL 69 (78)
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCEEEE
Confidence 346789999999999987553 354544
No 111
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=36.00 E-value=45 Score=22.50 Aligned_cols=29 Identities=24% Similarity=0.631 Sum_probs=16.2
Q ss_pred cceEEeCCCCC-CeEEccCCHHHHHHHHHHH
Q 019651 191 GTVRIQRPHKG-PFYVSPKTIDELLENLGKW 220 (337)
Q Consensus 191 G~l~i~~p~~g-pf~lS~~~~~~L~~~~~~~ 220 (337)
|.+.+++ .+| +|++|....+.-++++..|
T Consensus 6 ~ki~~~~-~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 6 AKIIFQS-KDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEEE-T--TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEEec-CCCcEEEEeCCCCHHHHHHHHHH
Confidence 3444544 788 9999988888777776654
No 112
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.94 E-value=14 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.3
Q ss_pred CCCccccccccceEE
Q 019651 319 TNCPLCRRRIDQVVR 333 (337)
Q Consensus 319 ~~CP~Cr~~i~~~~~ 333 (337)
..||+|..+-..+.+
T Consensus 18 ~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 18 WVCPVCGAPKDKFEK 32 (33)
T ss_pred CcCcCCCCcHHHcEE
Confidence 389999887766654
No 113
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=35.21 E-value=19 Score=25.00 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=12.6
Q ss_pred CCCccccccccceEEe
Q 019651 319 TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 319 ~~CP~Cr~~i~~~~~~ 334 (337)
+.|++|.+||...+-+
T Consensus 2 ~iCvvCK~Pi~~al~v 17 (53)
T PHA02610 2 KICVVCKQPIEKALVV 17 (53)
T ss_pred ceeeeeCCchhhceEE
Confidence 5799999999876543
No 114
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=35.15 E-value=3.5e+02 Score=24.69 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCeEEEEEEEEECCCcceEEeCCCCC-C-eEEccC--CHHHHHHHHHH----HHHHHHHHHhHHhHHHHHHHHHH
Q 019651 175 TGTSLTVVGEAVKDDIGTVRIQRPHKG-P-FYVSPK--TIDELLENLGK----WARWYKYASFGLTIFGAFLIAKR 242 (337)
Q Consensus 175 ~G~~ltvvGe~~~d~~G~l~i~~p~~g-p-f~lS~~--~~~~L~~~~~~----~a~~~~~~~i~~~~~G~~ll~~~ 242 (337)
+.+.+||+|... ++.+.=-..++| + .++... +.+++.+.... ....++.++.++..+|+.++...
T Consensus 132 ~~~~vTVVa~q~---g~~l~py~t~~g~~i~ll~~G~~s~~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~ 204 (248)
T PF07787_consen 132 PPGPVTVVAKQR---GNTLVPYTTKNGDKILLLEEGKVSAEEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLFSP 204 (248)
T ss_pred CCceEEEEEEEe---CCEEEEEEecCCCEEEEEEcCCcCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999842 344442233444 3 344444 66887765433 33356666777777777666543
No 115
>PF14163 SieB: Superinfection exclusion protein B
Probab=35.01 E-value=1.7e+02 Score=24.48 Aligned_cols=19 Identities=0% Similarity=0.281 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019651 247 ILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~ 265 (337)
++++++++..++.++.+-.
T Consensus 63 ~~~k~~~~~~~~~l~~Lt~ 81 (151)
T PF14163_consen 63 YQRKRKKKKIEKKLNSLTP 81 (151)
T ss_pred HHHHHHHHHHHHHHHhCCH
Confidence 3344444444454444433
No 116
>PHA03237 envelope glycoprotein M; Provisional
Probab=34.34 E-value=1.8e+02 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019651 233 IFGAFLIAKRVIRCILQ 249 (337)
Q Consensus 233 ~~G~~ll~~~~~r~~~~ 249 (337)
++.++++..++.|.+..
T Consensus 337 il~l~m~vvRlvRa~~y 353 (424)
T PHA03237 337 VIIVIMLVVRLVRACLY 353 (424)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555666666653
No 117
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=34.21 E-value=21 Score=21.01 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=8.4
Q ss_pred CCCcccccccc
Q 019651 319 TNCPLCRRRID 329 (337)
Q Consensus 319 ~~CP~Cr~~i~ 329 (337)
..||+|.+.+.
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 36999988773
No 118
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.13 E-value=22 Score=26.83 Aligned_cols=36 Identities=28% Similarity=0.720 Sum_probs=14.8
Q ss_pred cccccccccccc--------------ccCcccchhhhhc-----CCCCcccccccc
Q 019651 293 MPDLCVICLEQE--------------CGHLCCCLICSSR-----LTNCPLCRRRID 329 (337)
Q Consensus 293 ~~~~C~iC~~~~--------------CgH~~~C~~C~~~-----~~~CP~Cr~~i~ 329 (337)
+.+.|-||-+.- |+-.+ |..|..- .+.||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCcc
Confidence 456999999876 54443 7777642 258999997764
No 119
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.06 E-value=17 Score=21.49 Aligned_cols=17 Identities=29% Similarity=0.868 Sum_probs=10.0
Q ss_pred chhhhhcC----CCCcccccc
Q 019651 311 CLICSSRL----TNCPLCRRR 327 (337)
Q Consensus 311 C~~C~~~~----~~CP~Cr~~ 327 (337)
|.+|...+ +.||.|--.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 55666555 367777543
No 120
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=34.04 E-value=31 Score=24.41 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=26.6
Q ss_pred CeEEccCCHHHHHHHHHH-HHHHHHHHHhHHhHHHHHHH
Q 019651 202 PFYVSPKTIDELLENLGK-WARWYKYASFGLTIFGAFLI 239 (337)
Q Consensus 202 pf~lS~~~~~~L~~~~~~-~a~~~~~~~i~~~~~G~~ll 239 (337)
+|++++...++++.++.. .....+..+.+..++|++++
T Consensus 15 ~~~l~P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 15 LPFLAPERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHhCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766655 44566777877777887766
No 121
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=33.85 E-value=21 Score=35.92 Aligned_cols=23 Identities=30% Similarity=0.846 Sum_probs=19.4
Q ss_pred cccccccccccc-ccCccc--chhhh
Q 019651 293 MPDLCVICLEQE-CGHLCC--CLICS 315 (337)
Q Consensus 293 ~~~~C~iC~~~~-CgH~~~--C~~C~ 315 (337)
.+..|-+|-|+. |.|.-. |..|.
T Consensus 268 ~e~~CAVCgDnAaCqHYGvRTCEGCK 293 (605)
T KOG4217|consen 268 AEGLCAVCGDNAACQHYGVRTCEGCK 293 (605)
T ss_pred ccceeeecCChHHhhhcCccccccch
Confidence 357999999999 999854 88885
No 122
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=32.87 E-value=98 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 019651 222 RWYKYASFGLTIFGAFLIAKRVIRCIL 248 (337)
Q Consensus 222 ~~~~~~~i~~~~~G~~ll~~~~~r~~~ 248 (337)
.....+++++.++|++++.+..++|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~ry~~ 69 (73)
T PF02656_consen 43 RVSKVLGLLLIVLGLLTLIYGIYRYRR 69 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777778888888777777754
No 123
>PHA03049 IMV membrane protein; Provisional
Probab=32.79 E-value=32 Score=25.11 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=16.6
Q ss_pred eechhHHHHHHHHHHHHhhcchh
Q 019651 3 SWGGISCCLSGAALYLLGRSSGR 25 (337)
Q Consensus 3 ~~g~~~~~~~g~~~~~~~~~~~~ 25 (337)
++-+|+.+++|+++|-+|.+++.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 34456678888998988887553
No 124
>COG3701 TrbF Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]
Probab=32.66 E-value=24 Score=31.68 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.4
Q ss_pred CCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 019651 201 GPFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIR 245 (337)
Q Consensus 201 gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll~~~~~r 245 (337)
.||.-.....++-+.+.+.+++.|..++++..++.+++.+...|.
T Consensus 18 tPYq~A~q~WderiGs~r~qA~nwr~~~lg~l~la~~~~gg~vwq 62 (228)
T COG3701 18 TPYQKARQSWDERIGSARVQAQNWRFVGLGGLTLALALAGGLVWQ 62 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccceee
Confidence 499999999999999999999999999998888888777655443
No 125
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.64 E-value=23 Score=33.91 Aligned_cols=11 Identities=27% Similarity=1.044 Sum_probs=9.0
Q ss_pred CCccccccccc
Q 019651 320 NCPLCRRRIDQ 330 (337)
Q Consensus 320 ~CP~Cr~~i~~ 330 (337)
.||.|-.....
T Consensus 405 ~CPFC~~~L~g 415 (429)
T KOG3842|consen 405 ACPFCATQLAG 415 (429)
T ss_pred cCcchhhhhcc
Confidence 79999888764
No 126
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.51 E-value=15 Score=31.45 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=19.0
Q ss_pred cchhhhhcC-CCCccccccccceEE
Q 019651 310 CCLICSSRL-TNCPLCRRRIDQVVR 333 (337)
Q Consensus 310 ~C~~C~~~~-~~CP~Cr~~i~~~~~ 333 (337)
+|..|..+. ..||.|..+|.+.-.
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYH 54 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCcee
Confidence 488888764 799999999987543
No 127
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.22 E-value=16 Score=25.18 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=2.8
Q ss_pred CCccccccc
Q 019651 320 NCPLCRRRI 328 (337)
Q Consensus 320 ~CP~Cr~~i 328 (337)
.||+|.+++
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 355555444
No 128
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=32.18 E-value=2.2e+02 Score=21.30 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q 019651 237 FLIAKRVIRCILQ 249 (337)
Q Consensus 237 ~ll~~~~~r~~~~ 249 (337)
++++|++.|.+..
T Consensus 38 a~lSwkLaK~ie~ 50 (74)
T PF15086_consen 38 AVLSWKLAKAIEK 50 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777777743
No 129
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=31 Score=37.30 Aligned_cols=36 Identities=28% Similarity=0.675 Sum_probs=25.5
Q ss_pred ccccccccc---c-----ccCcccchhhhh-cCCCCccccccccce
Q 019651 295 DLCVICLEQ---E-----CGHLCCCLICSS-RLTNCPLCRRRIDQV 331 (337)
Q Consensus 295 ~~C~iC~~~---~-----CgH~~~C~~C~~-~~~~CP~Cr~~i~~~ 331 (337)
..|..|-.. | |||... ..|.. +...||-|+....+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyH-qhC~e~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYH-QHCLEDKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCccccceeeeecccHHH-HHhhccCcccCCccchhhhhh
Confidence 478888654 4 999873 46665 557999999854443
No 130
>COG3768 Predicted membrane protein [Function unknown]
Probab=31.84 E-value=3.1e+02 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 019651 211 DELLENLGKWARWYKYASFGLTIFGAFLIAKRVIRCI 247 (337)
Q Consensus 211 ~~L~~~~~~~a~~~~~~~i~~~~~G~~ll~~~~~r~~ 247 (337)
+++++.+=..+-|..|++.+-+.++++.....+.+.|
T Consensus 84 ~qwi~d~~qr~dWl~~~a~~v~~l~vlagv~~v~rEw 120 (350)
T COG3768 84 VQWIRDLFQRADWLGLGAAAVGALIVLAGVGSVVREW 120 (350)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555556666655544444444334444544
No 131
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=31.43 E-value=1.1e+02 Score=23.88 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 226 YASFGLTIFGAFLIAKRVIRCILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 226 ~~~i~~~~~G~~ll~~~~~r~~~~~~~~~~~~~~~~~~~~ 265 (337)
|+-+.||.-+++.++|....------...+++++++|+++
T Consensus 43 ~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 43 YALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKA 82 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence 4444455555555554433211111246778888887655
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.37 E-value=19 Score=31.29 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=16.6
Q ss_pred ccCcccchhhhhcCCCCccccccccceE
Q 019651 305 CGHLCCCLICSSRLTNCPLCRRRIDQVV 332 (337)
Q Consensus 305 CgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 332 (337)
|||.+ .. ..-..||+|..+-..+.
T Consensus 140 CGy~~--~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 140 CGYTH--EG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCcc--cC--CCCCcCCCCCChHHHhh
Confidence 58874 33 44569999998866554
No 133
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=31.35 E-value=13 Score=35.55 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=32.4
Q ss_pred ccccccccccc-----ccCcccchhhhhcC----CCCccccccccceEEe
Q 019651 294 PDLCVICLEQE-----CGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 294 ~~~C~iC~~~~-----CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~ 334 (337)
-..|.-=+-.+ |-|-+ |..|.-+- ..||.|...|.+..+.
T Consensus 18 C~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 18 CRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred hhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccc
Confidence 46888888777 99997 99998653 6999999999887643
No 134
>PRK01844 hypothetical protein; Provisional
Probab=31.29 E-value=1.5e+02 Score=22.06 Aligned_cols=24 Identities=8% Similarity=-0.166 Sum_probs=12.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHH
Q 019651 224 YKYASFGLTIFGAFLIAKRVIRCI 247 (337)
Q Consensus 224 ~~~~~i~~~~~G~~ll~~~~~r~~ 247 (337)
|..+.++..++|+++-.+.+.|+.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556555555545554
No 135
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=31.28 E-value=10 Score=35.72 Aligned_cols=38 Identities=32% Similarity=0.771 Sum_probs=27.3
Q ss_pred ccccccccc-----------ccCcccchhhhhcC----CCCccccccccceEEee
Q 019651 296 LCVICLEQE-----------CGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 335 (337)
Q Consensus 296 ~C~iC~~~~-----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~~ 335 (337)
.|+||...- |||.-- ..|...+ =.||+|-. +.....+|
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 399998854 999875 6777665 28999988 65554443
No 136
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=31.12 E-value=24 Score=24.74 Aligned_cols=16 Identities=25% Similarity=0.744 Sum_probs=12.6
Q ss_pred CCCCccccccccceEE
Q 019651 318 LTNCPLCRRRIDQVVR 333 (337)
Q Consensus 318 ~~~CP~Cr~~i~~~~~ 333 (337)
|.+|.+|.+||.....
T Consensus 1 m~~CvVCKqpi~~a~~ 16 (54)
T PF10886_consen 1 MEICVVCKQPIDDALV 16 (54)
T ss_pred CCeeeeeCCccCcceE
Confidence 4589999999988643
No 137
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.96 E-value=18 Score=29.93 Aligned_cols=22 Identities=32% Similarity=0.846 Sum_probs=16.0
Q ss_pred chhhhhc-CCCCccccccccceE
Q 019651 311 CLICSSR-LTNCPLCRRRIDQVV 332 (337)
Q Consensus 311 C~~C~~~-~~~CP~Cr~~i~~~~ 332 (337)
|..|... +..||+|..+|.+..
T Consensus 31 cskcgeati~qcp~csasirgd~ 53 (160)
T COG4306 31 CSKCGEATITQCPICSASIRGDY 53 (160)
T ss_pred HhhhchHHHhcCCccCCcccccc
Confidence 5556543 569999999998744
No 138
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=30.96 E-value=20 Score=34.60 Aligned_cols=25 Identities=40% Similarity=1.121 Sum_probs=21.4
Q ss_pred ccCcccchhhhhcCC-----CCccccccccc
Q 019651 305 CGHLCCCLICSSRLT-----NCPLCRRRIDQ 330 (337)
Q Consensus 305 CgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 330 (337)
||-.. |..|...++ .||.||...+.
T Consensus 36 cgy~i-c~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 36 CGYQI-CQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence 99887 999998874 89999998764
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.86 E-value=17 Score=26.17 Aligned_cols=24 Identities=38% Similarity=0.892 Sum_probs=12.9
Q ss_pred cccccccccccc-----------ccCcccchhhhhc
Q 019651 293 MPDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 293 ~~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
+...|.+|.... ||+.+ |..|+..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~v-C~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVV-CSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EE-ECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEE-CCchhCC
Confidence 346899998876 99987 8899864
No 140
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.70 E-value=3.2e+02 Score=24.64 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 240 AKRVIRCILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 240 ~~~~~r~~~~~~~~~~~~~~~~~~~~ 265 (337)
+..+.--|+.+|-....++++++..+
T Consensus 169 ~~~~~EPwkRrRLv~~fe~~v~~~l~ 194 (207)
T PF05546_consen 169 AQLLVEPWKRRRLVKSFEEKVKEALE 194 (207)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666554
No 141
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=30.65 E-value=29 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.114 Sum_probs=18.0
Q ss_pred CceechhHHHHHHHHHHHHhhcchhhhHhhccc
Q 019651 1 MISWGGISCCLSGAALYLLGRSSGRDAELLKTV 33 (337)
Q Consensus 1 m~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 33 (337)
|++++++.++++.++.|++.++-.+-++.|.+.
T Consensus 1 L~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~ 33 (70)
T PF00672_consen 1 LLVLFLIILLLSLLLAWLLARRITRPLRRLSDA 33 (70)
T ss_dssp -HHHHHHHHHHHHHHHHH--HTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555545555555666777766667666444
No 142
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.52 E-value=20 Score=20.48 Aligned_cols=18 Identities=28% Similarity=0.886 Sum_probs=10.6
Q ss_pred chhhhhcC----CCCccccccc
Q 019651 311 CLICSSRL----TNCPLCRRRI 328 (337)
Q Consensus 311 C~~C~~~~----~~CP~Cr~~i 328 (337)
|..|...+ +.||.|-.++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 55666555 3677776543
No 143
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=29.96 E-value=42 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=7.4
Q ss_pred HHHhHHhHHHHHHH
Q 019651 226 YASFGLTIFGAFLI 239 (337)
Q Consensus 226 ~~~i~~~~~G~~ll 239 (337)
+.+++++++|+++.
T Consensus 9 la~~aLaAAG~G~A 22 (137)
T PF12868_consen 9 LAEAALAAAGAGYA 22 (137)
T ss_pred HhHHHHHHHHHHHH
Confidence 44455566665444
No 144
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=23 Score=35.00 Aligned_cols=23 Identities=39% Similarity=0.982 Sum_probs=18.6
Q ss_pred cccccccc-ccc----------ccCcccchhhhhc
Q 019651 294 PDLCVICL-EQE----------CGHLCCCLICSSR 317 (337)
Q Consensus 294 ~~~C~iC~-~~~----------CgH~~~C~~C~~~ 317 (337)
...|.||+ +.+ |+|.+ |.+|..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHH
Confidence 56899999 333 99998 9999874
No 145
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.60 E-value=2.4e+02 Score=21.13 Aligned_cols=6 Identities=17% Similarity=-0.031 Sum_probs=2.4
Q ss_pred HHHHHH
Q 019651 243 VIRCIL 248 (337)
Q Consensus 243 ~~r~~~ 248 (337)
.+.+|.
T Consensus 22 l~lHY~ 27 (75)
T TIGR02976 22 LILHYR 27 (75)
T ss_pred HHHHHH
Confidence 344443
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.04 E-value=22 Score=32.66 Aligned_cols=24 Identities=25% Similarity=0.793 Sum_probs=18.5
Q ss_pred CcccchhhhhcC----CCCccccccccc
Q 019651 307 HLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 307 H~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
-+-.|.+|...+ +.||+|.+.-.+
T Consensus 193 PMK~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 193 PMKTCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred CcchhHhHHHHHhcCCCCCccccccccc
Confidence 455699999987 589999876443
No 147
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=22 Score=35.03 Aligned_cols=32 Identities=31% Similarity=0.743 Sum_probs=22.0
Q ss_pred ccccccc-----cc-----ccCcccchhhhhcCC-------CCccccccc
Q 019651 296 LCVICLE-----QE-----CGHLCCCLICSSRLT-------NCPLCRRRI 328 (337)
Q Consensus 296 ~C~iC~~-----~~-----CgH~~~C~~C~~~~~-------~CP~Cr~~i 328 (337)
.|+|=.+ || |||+. |.+=..++. +||-|-...
T Consensus 336 ~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 336 ICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 6777544 33 99997 777666652 799996544
No 148
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.28 E-value=35 Score=32.80 Aligned_cols=38 Identities=37% Similarity=0.961 Sum_probs=30.1
Q ss_pred ccccccccccc-----------ccCcccchhhhhcC----CCCccccccccceE
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSRL----TNCPLCRRRIDQVV 332 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 332 (337)
...|++|.+-. |+|. .|..|...+ ..||.||.+...-.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 36999999833 9999 699998876 38999998876543
No 149
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=27.58 E-value=67 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.1
Q ss_pred eecCCCeEEEEEEEEECCCcceEEeCC
Q 019651 172 LLPTGTSLTVVGEAVKDDIGTVRIQRP 198 (337)
Q Consensus 172 ~L~~G~~ltvvGe~~~d~~G~l~i~~p 198 (337)
.|.+|+.+.+.|.+....++++.|..+
T Consensus 44 ~l~~g~~v~v~G~v~~~~~~~~~l~~~ 70 (75)
T PF01336_consen 44 KLKEGDIVRVRGKVKRYNGGELELIVP 70 (75)
T ss_dssp TS-TTSEEEEEEEEEEETTSSEEEEEE
T ss_pred cCCCCeEEEEEEEEEEECCccEEEEEC
Confidence 477999999999998876555776543
No 150
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=27.43 E-value=1.9e+02 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=9.3
Q ss_pred CeEEccCCHHHHHH
Q 019651 202 PFYVSPKTIDELLE 215 (337)
Q Consensus 202 pf~lS~~~~~~L~~ 215 (337)
+..+.+.+++..++
T Consensus 60 ~~~i~pL~e~~Aie 73 (134)
T PF07047_consen 60 PRKIRPLNEEKAIE 73 (134)
T ss_pred CCcCCCCCHHHHHH
Confidence 45667777876664
No 151
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.52 E-value=3.5e+02 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=6.5
Q ss_pred HHHHHHhHHhHHHHHH
Q 019651 223 WYKYASFGLTIFGAFL 238 (337)
Q Consensus 223 ~~~~~~i~~~~~G~~l 238 (337)
.|.+.+|++ ++|+++
T Consensus 7 ~W~~a~igL-vvGi~I 21 (138)
T COG3105 7 TWEYALIGL-VVGIII 21 (138)
T ss_pred HHHHHHHHH-HHHHHH
Confidence 344444443 345444
No 152
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.14 E-value=21 Score=23.78 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=16.3
Q ss_pred CcccchhhhhcC--------CCCcccccccc
Q 019651 307 HLCCCLICSSRL--------TNCPLCRRRID 329 (337)
Q Consensus 307 H~~~C~~C~~~~--------~~CP~Cr~~i~ 329 (337)
+...|..|...+ ..||.|..++.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 345678887654 37999988765
No 153
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=25.90 E-value=44 Score=23.83 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=14.2
Q ss_pred ceechhHHHHHHHHHHHHhh
Q 019651 2 ISWGGISCCLSGAALYLLGR 21 (337)
Q Consensus 2 ~~~g~~~~~~~g~~~~~~~~ 21 (337)
+++||+ +.+.|+.+|-++.
T Consensus 9 ~~~ggf-Vg~iG~a~Ypi~~ 27 (58)
T PF15061_consen 9 LFVGGF-VGLIGAALYPIYF 27 (58)
T ss_pred hhHHHH-HHHHHHHHhhhhc
Confidence 578888 7888888885554
No 154
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.63 E-value=59 Score=30.72 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.1
Q ss_pred EeeecCCCeEEEEEEEEECCCcce--EEeCCCCC-CeEEcc
Q 019651 170 GRLLPTGTSLTVVGEAVKDDIGTV--RIQRPHKG-PFYVSP 207 (337)
Q Consensus 170 E~~L~~G~~ltvvGe~~~d~~G~l--~i~~p~~g-pf~lS~ 207 (337)
...+..++-|.+.|.+....-|.+ .|-.-++- ||++|.
T Consensus 155 ~~~~~~~~~Llv~G~l~~~~~G~~saalydG~~w~Py~~t~ 195 (281)
T PF12768_consen 155 SSLFDSDQVLLVTGSLNLPDFGNASAALYDGTSWTPYLLTS 195 (281)
T ss_pred ccccCCCcEEEEEeeEecCCCCcEEEEEECCCEEEEEEEEe
Confidence 457888999999999987654543 23322222 555554
No 155
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.57 E-value=27 Score=32.93 Aligned_cols=42 Identities=24% Similarity=0.642 Sum_probs=18.4
Q ss_pred cccccccccccc--------c--c--CcccchhhhhcC----CCCccccccccceEEee
Q 019651 293 MPDLCVICLEQE--------C--G--HLCCCLICSSRL----TNCPLCRRRIDQVVRTF 335 (337)
Q Consensus 293 ~~~~C~iC~~~~--------C--g--H~~~C~~C~~~~----~~CP~Cr~~i~~~~~~~ 335 (337)
+...|+||-+.| = | |+ .|.-|...- ..||.|-..-...+..|
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 457999999998 1 3 33 388887543 28999988766665554
No 156
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.53 E-value=3.1e+02 Score=20.96 Aligned_cols=27 Identities=4% Similarity=0.063 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 019651 213 LLENLGKWARWYKYASFGLTIFGAFLI 239 (337)
Q Consensus 213 L~~~~~~~a~~~~~~~i~~~~~G~~ll 239 (337)
.++++.+..+....+.+++.++|++++
T Consensus 5 ~~~~~~~~~~l~i~l~~~v~~~a~~~v 31 (97)
T PF04999_consen 5 IIRDIKRQKKLIILLVIVVLISALGVV 31 (97)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455666665555444444444444333
No 157
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=25.04 E-value=2e+02 Score=28.50 Aligned_cols=7 Identities=0% Similarity=-0.509 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 019651 243 VIRCILQ 249 (337)
Q Consensus 243 ~~r~~~~ 249 (337)
.+.+|.+
T Consensus 182 g~~~~~~ 188 (414)
T PF06864_consen 182 GWWYWQA 188 (414)
T ss_pred HHHHhhh
Confidence 4444443
No 158
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=24.86 E-value=2.5e+02 Score=21.75 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred EeCCCCCCeEEccCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 019651 195 IQRPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIRCILQR 250 (337)
Q Consensus 195 i~~p~~gpf~lS~~~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll~~~~~r~~~~~ 250 (337)
+++|+.| ...+.=+.+..+..-. ..++++++++++.+.+++.++.-|.+-
T Consensus 4 ~e~Ps~g----~~~~~~~~i~~y~~d~--~~l~gLv~~a~afi~Va~~~i~~y~ei 53 (87)
T PF11190_consen 4 VEPPSSG----GGGGIMETIKGYAKDG--VLLLGLVLAAAAFIVVAKAAISTYNEI 53 (87)
T ss_pred CCCCCCC----CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766 4555555555554432 234555555555555666666666543
No 159
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=24.84 E-value=1.4e+02 Score=19.67 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 019651 221 ARWYKYASFGLTIFGAFLIAKRVIRCI 247 (337)
Q Consensus 221 a~~~~~~~i~~~~~G~~ll~~~~~r~~ 247 (337)
.+++.+.+.+.+.+|++..++.+++.|
T Consensus 12 RdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 12 RDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777788888888888776543
No 160
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=24.78 E-value=1.6e+02 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 233 IFGAFLIAKRVIRCILQRKRRWELRRRVLAAAA 265 (337)
Q Consensus 233 ~~G~~ll~~~~~r~~~~~~~~~~~~~~~~~~~~ 265 (337)
++|++-.+|..+||......|+|+-++++++.+
T Consensus 54 lvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k~ 86 (90)
T PF14159_consen 54 LVGLGYTGWFVYRYLLFAENRQELLQKIQSLKK 86 (90)
T ss_pred HHHHHHHhHHHHHHHcChHhHHHHHHHHHHHHH
Confidence 556666678888998776667777777776543
No 161
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=24.43 E-value=1.8e+02 Score=28.89 Aligned_cols=28 Identities=11% Similarity=-0.200 Sum_probs=15.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 228 SFGLTIFGAFLIAKRVIRCILQRKRRWE 255 (337)
Q Consensus 228 ~i~~~~~G~~ll~~~~~r~~~~~~~~~~ 255 (337)
++++++++++..++.++..++++.++.+
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~~~a 197 (414)
T PF06864_consen 170 AALVVLALAGGYGWWYWQAQQEEARRAA 197 (414)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3334444445567878877765444333
No 162
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=24.39 E-value=69 Score=19.94 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=13.1
Q ss_pred echhHHHHHHHHHHHHhhcchhhhHh
Q 019651 4 WGGISCCLSGAALYLLGRSSGRDAEL 29 (337)
Q Consensus 4 ~g~~~~~~~g~~~~~~~~~~~~~~~~ 29 (337)
+.++ +.++|+.++ .++++.+.+.+
T Consensus 4 l~i~-L~l~ga~f~-~fKKyQ~~vnq 27 (33)
T PF10855_consen 4 LAII-LILGGAAFY-GFKKYQNHVNQ 27 (33)
T ss_pred eeeh-hhhhhHHHH-HHHHHHHHHhc
Confidence 4455 566666655 55555544443
No 163
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.35 E-value=38 Score=26.67 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=9.2
Q ss_pred CCccccccccce
Q 019651 320 NCPLCRRRIDQV 331 (337)
Q Consensus 320 ~CP~Cr~~i~~~ 331 (337)
.||.|+.++...
T Consensus 82 ~Cp~C~spFNp~ 93 (105)
T COG4357 82 SCPYCQSPFNPG 93 (105)
T ss_pred CCCCcCCCCCcc
Confidence 699998887643
No 164
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.98 E-value=23 Score=26.26 Aligned_cols=36 Identities=22% Similarity=0.604 Sum_probs=16.6
Q ss_pred cccccccccc--ccCcccchhhhhcC---CCCccccccccc
Q 019651 295 DLCVICLEQE--CGHLCCCLICSSRL---TNCPLCRRRIDQ 330 (337)
Q Consensus 295 ~~C~iC~~~~--CgH~~~C~~C~~~~---~~CP~Cr~~i~~ 330 (337)
..|+.|.... =+....|..|.... ..||-|.++.+.
T Consensus 2 ~~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeCCEEECccccccceecccCCCcccHHHH
Confidence 3677777655 33223477777654 368888777653
No 165
>PRK01343 zinc-binding protein; Provisional
Probab=23.92 E-value=38 Score=24.09 Aligned_cols=12 Identities=25% Similarity=0.756 Sum_probs=9.0
Q ss_pred CCCccccccccc
Q 019651 319 TNCPLCRRRIDQ 330 (337)
Q Consensus 319 ~~CP~Cr~~i~~ 330 (337)
.+||+|+.+...
T Consensus 10 ~~CP~C~k~~~~ 21 (57)
T PRK01343 10 RPCPECGKPSTR 21 (57)
T ss_pred CcCCCCCCcCcC
Confidence 478888887654
No 166
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.44 E-value=69 Score=28.41 Aligned_cols=22 Identities=14% Similarity=0.094 Sum_probs=10.5
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHH
Q 019651 225 KYASFGLTIFGAFLIAKRVIRCI 247 (337)
Q Consensus 225 ~~~~i~~~~~G~~ll~~~~~r~~ 247 (337)
++++|++ ++|+.-+++.+||.+
T Consensus 163 FiGGIVL-~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 163 FIGGIVL-TLGVLAIIFFLYKFC 184 (186)
T ss_pred hhhHHHH-HHHHHHHHHHHhhhc
Confidence 4556554 334444444445544
No 167
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=23.39 E-value=99 Score=23.87 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.4
Q ss_pred EEeeecCCCeEEEEEEEEECCCcceEE
Q 019651 169 IGRLLPTGTSLTVVGEAVKDDIGTVRI 195 (337)
Q Consensus 169 ~E~~L~~G~~ltvvGe~~~d~~G~l~i 195 (337)
...-|.+|+-+-|.|.+..- .|.+.|
T Consensus 59 ~~~~i~~G~vvrV~G~i~~f-rg~~ql 84 (92)
T cd04483 59 QAKVLEIGDLLRVRGSIRTY-RGEREI 84 (92)
T ss_pred cccccCCCCEEEEEEEEecc-CCeeEE
Confidence 34469999999999997654 454443
No 168
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=23.34 E-value=3.2e+02 Score=20.44 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=17.7
Q ss_pred EeeecCCCeEEEEEEEEECCCcceEE
Q 019651 170 GRLLPTGTSLTVVGEAVKDDIGTVRI 195 (337)
Q Consensus 170 E~~L~~G~~ltvvGe~~~d~~G~l~i 195 (337)
...+.+|+.+-+.|.+..- +|.+.|
T Consensus 45 ~~~~~~g~~v~v~G~v~~~-~g~~ql 69 (95)
T cd04478 45 VEPIEEGTYVRVFGNLKSF-QGKKSI 69 (95)
T ss_pred ccccccCCEEEEEEEEccc-CCeeEE
Confidence 3458899999999997554 455443
No 169
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=23.27 E-value=36 Score=26.51 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=26.0
Q ss_pred ccccccccccc--ccCcccchhhhhcC--CCCccccc
Q 019651 294 PDLCVICLEQE--CGHLCCCLICSSRL--TNCPLCRR 326 (337)
Q Consensus 294 ~~~C~iC~~~~--CgH~~~C~~C~~~~--~~CP~Cr~ 326 (337)
+..|+||-+.. |.-+-.|.+|+--- .+|.||..
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecC
Confidence 35899998755 98888899998543 58999876
No 170
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.25 E-value=34 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=9.3
Q ss_pred CCccccccccceEE
Q 019651 320 NCPLCRRRIDQVVR 333 (337)
Q Consensus 320 ~CP~Cr~~i~~~~~ 333 (337)
.||+|..+...+..
T Consensus 36 ~CP~C~a~K~~F~~ 49 (50)
T cd00730 36 VCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCcHHHcEe
Confidence 67777776665543
No 171
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.94 E-value=1.4e+02 Score=26.56 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 019651 233 IFGAFLI 239 (337)
Q Consensus 233 ~~G~~ll 239 (337)
++++.++
T Consensus 44 ~I~ly~l 50 (190)
T PF06936_consen 44 CILLYLL 50 (190)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3444444
No 172
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=22.92 E-value=1.5e+02 Score=23.51 Aligned_cols=9 Identities=33% Similarity=0.922 Sum_probs=4.1
Q ss_pred HHHHHHhHH
Q 019651 223 WYKYASFGL 231 (337)
Q Consensus 223 ~~~~~~i~~ 231 (337)
+|+|+.+++
T Consensus 22 w~FWlv~~l 30 (102)
T PF11669_consen 22 WYFWLVWVL 30 (102)
T ss_pred HHHHHHHHH
Confidence 455554333
No 173
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=3.1e+02 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019651 244 IRCILQRKRRWELRRRVLAAA 264 (337)
Q Consensus 244 ~r~~~~~~~~~~~~~~~~~~~ 264 (337)
.|+.+.+++.+++..|+++++
T Consensus 63 ~K~~rD~he~~rl~ari~~Ar 83 (95)
T COG4298 63 VKYRRDEHESARLSARIEKAR 83 (95)
T ss_pred hHHhhhHHHHHHHHHHHHHHH
Confidence 355555556666766666654
No 174
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=22.70 E-value=1.8e+02 Score=27.55 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=25.2
Q ss_pred CCcccccccccccc---ccCcccchhhhhcCC-CCcc
Q 019651 291 RVMPDLCVICLEQE---CGHLCCCLICSSRLT-NCPL 323 (337)
Q Consensus 291 ~~~~~~C~iC~~~~---CgH~~~C~~C~~~~~-~CP~ 323 (337)
.+....|.-|-.-. --|-..|..|--+|. .||-
T Consensus 99 ~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPw 135 (309)
T KOG1313|consen 99 LENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPW 135 (309)
T ss_pred CccccHHhhcCCCCCCCcchhhHHhhHhhccccCCch
Confidence 34456999997644 777778999999996 7884
No 175
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.59 E-value=1.4e+02 Score=27.35 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019651 236 AFLIAKRVIRCILQRKRR 253 (337)
Q Consensus 236 ~~ll~~~~~r~~~~~~~~ 253 (337)
++.|+|..||.|+..+++
T Consensus 211 i~tLtYvGwRKYrgek~~ 228 (232)
T PF09577_consen 211 IATLTYVGWRKYRGEKEK 228 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344778888888654443
No 176
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.35 E-value=4.3e+02 Score=21.54 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=14.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHH
Q 019651 223 WYKYASFGLTIFGAFLIAKRVIR 245 (337)
Q Consensus 223 ~~~~~~i~~~~~G~~ll~~~~~r 245 (337)
.+.++=|+|--+|+++|+|.++.
T Consensus 14 ~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 14 AMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556899999887764
No 177
>PF15050 SCIMP: SCIMP protein
Probab=22.30 E-value=90 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.067 Sum_probs=11.5
Q ss_pred HHHHHHhHHh--HHHHHHHHHHHHHH
Q 019651 223 WYKYASFGLT--IFGAFLIAKRVIRC 246 (337)
Q Consensus 223 ~~~~~~i~~~--~~G~~ll~~~~~r~ 246 (337)
+|..+|+++. .+|++|+.|-+.|.
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444 44555554444443
No 178
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=22.24 E-value=1.5e+02 Score=22.10 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=28.0
Q ss_pred EeeecCCCeEEEE--------EEEEECCCcceEEeCCCCCCeEEccCCHHHHHHHHHHHH
Q 019651 170 GRLLPTGTSLTVV--------GEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWA 221 (337)
Q Consensus 170 E~~L~~G~~ltvv--------Ge~~~d~~G~l~i~~p~~gpf~lS~~~~~~L~~~~~~~a 221 (337)
+.+|-+|+.|.+- +++.-+.+|.+.+ |.=|++-++.++.+++.+.++...
T Consensus 10 ~y~l~pGD~l~i~v~~~~~l~~~~~V~~dG~I~l--P~iG~v~v~G~T~~e~~~~I~~~l 67 (82)
T PF02563_consen 10 EYRLGPGDVLRISVFGWPELSGEYTVDPDGTISL--PLIGPVKVAGLTLEEAEEEIKQRL 67 (82)
T ss_dssp -----TT-EEEEEETT-HHHCCSEE--TTSEEEE--TTTEEEE-TT--HHHHHHHHHHHH
T ss_pred CCEECCCCEEEEEEecCCCcccceEECCCCcEee--cccceEEECCCCHHHHHHHHHHHH
Confidence 3455566655443 2334456888777 777889999999999998887653
No 179
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=22.22 E-value=56 Score=25.66 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=22.9
Q ss_pred cCCeeEEEeCCCCCcccceeeeeeeEecCCcccccccccccccccccceEEEEeeecCCCeEEEEEEE
Q 019651 118 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 185 (337)
Q Consensus 118 D~tg~V~V~~~~~A~~l~l~~~~~~f~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~G~~ltvvGe~ 185 (337)
|+.++|.|+.|.++...|-++...+| -|..+..||.. ++|-|+||+
T Consensus 52 ~g~~RiYiVEPtG~~EdDPNvTdkkf---------------PGNPTrSyRs~-------~PlrvvgEv 97 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDPNVTDKKF---------------PGNPTRSYRSR-------EPLRVVGEV 97 (100)
T ss_dssp SS--EEEEEEESS--EE-GGGSSSSS---------------SS-TT-EEEES-------S-EEEEEEE
T ss_pred CCCCcEEEEccCCCcccCccccCCCC---------------CCCCcceeecC-------CCeEEEEEe
Confidence 66788999888877433322222222 23335567765 478888885
No 180
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=21.93 E-value=28 Score=36.76 Aligned_cols=35 Identities=37% Similarity=0.931 Sum_probs=27.9
Q ss_pred cccccccccc-------ccCcccchhhhhcC-------CCCccccccccc
Q 019651 295 DLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLCRRRIDQ 330 (337)
Q Consensus 295 ~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 330 (337)
.+|.||+..- |.|-+ |..|.... ..||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 4899999865 99997 88887654 379999987754
No 181
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=21.50 E-value=31 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=15.6
Q ss_pred ccccccccccc--------ccCcccchhhhhcC------CCCcc
Q 019651 294 PDLCVICLEQE--------CGHLCCCLICSSRL------TNCPL 323 (337)
Q Consensus 294 ~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~ 323 (337)
...|+|.+... |||.+ ..+....+ ..||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 45899888754 99987 66665443 27988
No 182
>PF12669 P12: Virus attachment protein p12 family
Probab=21.37 E-value=74 Score=22.55 Aligned_cols=6 Identities=50% Similarity=0.362 Sum_probs=3.5
Q ss_pred ceechh
Q 019651 2 ISWGGI 7 (337)
Q Consensus 2 ~~~g~~ 7 (337)
||+|++
T Consensus 2 iII~~I 7 (58)
T PF12669_consen 2 IIIGII 7 (58)
T ss_pred eeHHHH
Confidence 456665
No 183
>PF15102 TMEM154: TMEM154 protein family
Probab=21.35 E-value=26 Score=29.78 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhcch
Q 019651 9 CCLSGAALYLLGRSSG 24 (337)
Q Consensus 9 ~~~~g~~~~~~~~~~~ 24 (337)
++++++|+.+.||+++
T Consensus 71 LLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHheeEEeecc
Confidence 3445555443444333
No 184
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.22 E-value=54 Score=23.47 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=12.1
Q ss_pred CCCccccccccceEEe
Q 019651 319 TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 319 ~~CP~Cr~~i~~~~~~ 334 (337)
+.||+|..+..+-.+.
T Consensus 40 p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 40 PVCPLCKSPMVSGTRM 55 (59)
T ss_pred ccCCCcCCccccceee
Confidence 5899999888765543
No 185
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=21.18 E-value=3e+02 Score=19.18 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019651 233 IFGAFLIAKRVIRCILQR 250 (337)
Q Consensus 233 ~~G~~ll~~~~~r~~~~~ 250 (337)
++|+++-++.+.+..++.
T Consensus 9 i~gI~~S~ym~v~t~~eE 26 (52)
T PF14147_consen 9 IAGIIFSGYMAVKTAKEE 26 (52)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455656667667766543
No 186
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=21.15 E-value=32 Score=23.94 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=3.8
Q ss_pred CCcccccccc
Q 019651 320 NCPLCRRRID 329 (337)
Q Consensus 320 ~CP~Cr~~i~ 329 (337)
+||+|...+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4666655544
No 187
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=21.09 E-value=2.3e+02 Score=20.51 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 019651 208 KTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIRCILQ 249 (337)
Q Consensus 208 ~~~~~L~~~~~~~a~~~~~~~i~~~~~G~~ll~~~~~r~~~~ 249 (337)
.+.++....+..+ -++.++++++|++++++-+++-++.
T Consensus 31 ~~~~~~~~~l~~~----p~G~~ll~~vg~gli~~gi~~~~~a 68 (73)
T PF06724_consen 31 QGSQGALAWLLEQ----PFGRWLLGAVGLGLIGYGIWQFVKA 68 (73)
T ss_pred CCHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555443 2444556666666666655555544
No 188
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=2.2e+02 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=9.6
Q ss_pred CcceEEeCCCCC--CeEEc
Q 019651 190 IGTVRIQRPHKG--PFYVS 206 (337)
Q Consensus 190 ~G~l~i~~p~~g--pf~lS 206 (337)
-|.+-+|.|.+. |+.++
T Consensus 105 lG~~ll~~~~~s~~~~~l~ 123 (184)
T COG3216 105 LGAWLLQRPAQSVGPVHLT 123 (184)
T ss_pred hhhHHhcCCCCCCCchHHH
Confidence 566666666543 55543
No 189
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.86 E-value=45 Score=24.13 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=9.1
Q ss_pred CCCcccccccc
Q 019651 319 TNCPLCRRRID 329 (337)
Q Consensus 319 ~~CP~Cr~~i~ 329 (337)
.+||+|+.++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 48999999874
No 190
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=20.62 E-value=34 Score=32.44 Aligned_cols=35 Identities=29% Similarity=0.755 Sum_probs=25.7
Q ss_pred Ccccccccccccc------------ccCcccchhhhhcC-----------CCCcccccc
Q 019651 292 VMPDLCVICLEQE------------CGHLCCCLICSSRL-----------TNCPLCRRR 327 (337)
Q Consensus 292 ~~~~~C~iC~~~~------------CgH~~~C~~C~~~~-----------~~CP~Cr~~ 327 (337)
.+-..|.+|.-.+ ||+.+ |..|..+. ..|++|-..
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~iv-C~~Cs~n~~~l~~~~~k~~rvC~~CF~e 223 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIV-CAPCSRNRFLLPNLSTKPIRVCDICFEE 223 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHh-hhhhhcCcccccccCCCCceecHHHHHH
Confidence 3456999999833 99997 88998762 258888543
No 191
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.58 E-value=5.2e+02 Score=23.18 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.9
Q ss_pred ccceEEEEeeecCCCeEEEEEE
Q 019651 163 MLGVKRIGRLLPTGTSLTVVGE 184 (337)
Q Consensus 163 ~~g~r~~E~~L~~G~~ltvvGe 184 (337)
...|+-. ..|+.|++|++++.
T Consensus 41 g~~y~Iv-~~l~~G~~v~vl~~ 61 (206)
T PRK10884 41 GDQYRIV-GTLNAGEEVTLLQV 61 (206)
T ss_pred CCCCceE-EEEcCCCEEEEEEE
Confidence 4467766 56999999999997
No 192
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=43 Score=31.86 Aligned_cols=31 Identities=26% Similarity=0.737 Sum_probs=22.4
Q ss_pred ccccccccccccccCcccchhhhhcCCCCccccccccceE
Q 019651 293 MPDLCVICLEQECGHLCCCLICSSRLTNCPLCRRRIDQVV 332 (337)
Q Consensus 293 ~~~~C~iC~~~~CgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 332 (337)
....|-||.... -...+..||+||.+|++.|
T Consensus 26 ~HkFCyiCiKGs---------y~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 26 FHKFCYICIKGS---------YKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cchhhhhhhcch---------hhcCCCCCceecCCCCcch
Confidence 345788887643 3345678999999999865
Done!