Query 019651
Match_columns 337
No_of_seqs 304 out of 1244
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 2.9E-12 9.9E-17 94.0 4.1 47 290-336 11-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.2 3.9E-12 1.3E-16 91.8 1.4 46 292-337 5-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.0 3.3E-11 1.1E-15 87.2 0.7 45 293-337 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.0 2.1E-10 7.2E-15 86.5 3.8 44 294-337 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 98.9 2.8E-10 9.6E-15 84.6 2.6 45 293-337 23-74 (74)
6 2ecg_A Baculoviral IAP repeat- 98.9 1.7E-10 5.9E-15 85.9 1.3 45 293-337 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.6 1.2E-08 4.1E-13 97.4 3.0 45 293-337 294-345 (345)
8 2d8t_A Dactylidin, ring finger 98.1 2E-06 6.9E-11 62.7 3.3 39 291-330 12-61 (71)
9 2ysl_A Tripartite motif-contai 98.0 3.6E-06 1.2E-10 61.4 4.1 39 291-330 17-69 (73)
10 1chc_A Equine herpes virus-1 r 98.0 1.6E-06 5.5E-11 62.4 2.0 42 294-336 5-58 (68)
11 2ecn_A Ring finger protein 141 98.0 1.7E-06 5.9E-11 62.7 1.7 44 291-335 12-65 (70)
12 2csy_A Zinc finger protein 183 98.0 3.5E-06 1.2E-10 62.9 3.0 40 291-331 12-62 (81)
13 2ect_A Ring finger protein 126 98.0 3.3E-06 1.1E-10 62.5 2.7 41 290-331 11-65 (78)
14 2ep4_A Ring finger protein 24; 97.9 2.8E-06 9.5E-11 62.3 2.1 43 290-333 11-67 (74)
15 2kiz_A E3 ubiquitin-protein li 97.9 3.4E-06 1.2E-10 60.9 2.5 42 291-333 11-66 (69)
16 2ea6_A Ring finger protein 4; 97.9 5.3E-06 1.8E-10 59.6 2.6 39 291-330 12-68 (69)
17 1e4u_A Transcriptional repress 97.9 5.2E-06 1.8E-10 62.1 2.4 43 292-335 9-67 (78)
18 2djb_A Polycomb group ring fin 97.8 7.6E-06 2.6E-10 59.7 3.0 41 290-331 11-63 (72)
19 2egp_A Tripartite motif-contai 97.8 1E-05 3.6E-10 59.7 3.7 39 291-330 9-65 (79)
20 1bor_A Transcription factor PM 97.8 7.1E-06 2.4E-10 57.1 2.6 37 293-330 5-49 (56)
21 2xeu_A Ring finger protein 4; 97.8 6.8E-06 2.3E-10 58.1 2.0 41 294-335 3-63 (64)
22 2ecv_A Tripartite motif-contai 97.8 2.1E-05 7.1E-10 58.7 4.6 39 291-330 16-71 (85)
23 2ecy_A TNF receptor-associated 97.8 1.3E-05 4.5E-10 57.3 3.0 39 291-330 12-62 (66)
24 2ecw_A Tripartite motif-contai 97.7 2.3E-05 7.7E-10 58.5 4.2 39 291-330 16-71 (85)
25 2ct2_A Tripartite motif protei 97.7 1.5E-05 5.1E-10 60.1 3.0 40 290-330 11-68 (88)
26 2ecm_A Ring finger and CHY zin 97.7 1E-05 3.5E-10 55.5 1.9 36 294-330 5-55 (55)
27 1x4j_A Ring finger protein 38; 97.7 9.9E-06 3.4E-10 59.5 1.7 38 292-330 21-72 (75)
28 3ng2_A RNF4, snurf, ring finge 97.7 9E-06 3.1E-10 58.8 1.4 42 293-335 9-70 (71)
29 4ayc_A E3 ubiquitin-protein li 97.7 8.3E-06 2.8E-10 67.4 1.2 38 294-332 53-101 (138)
30 1iym_A EL5; ring-H2 finger, ub 97.7 1.7E-05 5.8E-10 54.4 2.5 35 294-329 5-54 (55)
31 2y1n_A E3 ubiquitin-protein li 97.7 1.5E-05 5.3E-10 76.7 3.1 40 295-335 333-384 (389)
32 2l0b_A E3 ubiquitin-protein li 97.6 1.4E-05 4.6E-10 61.3 1.7 38 292-330 38-89 (91)
33 1g25_A CDK-activating kinase a 97.6 1.4E-05 4.9E-10 56.9 1.6 36 294-330 3-55 (65)
34 2yur_A Retinoblastoma-binding 97.6 3.4E-05 1.2E-09 56.6 3.1 39 290-329 11-63 (74)
35 3l11_A E3 ubiquitin-protein li 97.5 3.5E-05 1.2E-09 61.3 1.8 39 291-330 12-62 (115)
36 3ztg_A E3 ubiquitin-protein li 97.4 7.3E-05 2.5E-09 56.9 2.6 37 291-328 10-60 (92)
37 3fl2_A E3 ubiquitin-protein li 97.3 4.9E-05 1.7E-09 61.4 0.8 37 293-330 51-99 (124)
38 2ecj_A Tripartite motif-contai 97.3 0.00013 4.6E-09 50.2 3.0 33 291-324 12-58 (58)
39 3lrq_A E3 ubiquitin-protein li 97.3 5E-05 1.7E-09 59.1 0.7 37 293-330 21-70 (100)
40 2ckl_A Polycomb group ring fin 97.2 9.1E-05 3.1E-09 58.3 1.4 37 293-330 14-62 (108)
41 2y43_A E3 ubiquitin-protein li 97.2 7.2E-05 2.5E-09 57.9 0.8 37 293-330 21-69 (99)
42 2ysj_A Tripartite motif-contai 97.2 0.00029 9.9E-09 49.6 3.9 33 291-324 17-63 (63)
43 2ckl_B Ubiquitin ligase protei 97.2 6.7E-05 2.3E-09 63.6 0.5 38 292-330 52-102 (165)
44 1jm7_A BRCA1, breast cancer ty 97.2 0.00011 3.7E-09 57.9 1.5 36 294-330 21-70 (112)
45 1t1h_A Gspef-atpub14, armadill 97.1 0.00015 5.2E-09 53.4 1.8 37 293-330 7-55 (78)
46 1v87_A Deltex protein 2; ring- 97.1 0.00012 3.9E-09 58.1 0.9 36 294-330 25-94 (114)
47 1z6u_A NP95-like ring finger p 97.1 0.00013 4.5E-09 61.1 1.3 37 294-331 78-126 (150)
48 3hct_A TNF receptor-associated 97.0 0.0002 6.8E-09 57.3 1.8 39 291-330 15-65 (118)
49 1jm7_B BARD1, BRCA1-associated 97.0 0.00024 8.1E-09 56.8 1.9 36 293-329 21-66 (117)
50 1rmd_A RAG1; V(D)J recombinati 96.7 0.00032 1.1E-08 55.7 0.8 37 293-330 22-70 (116)
51 2ecl_A Ring-box protein 2; RNF 96.7 0.00053 1.8E-08 51.1 1.7 25 305-330 48-76 (81)
52 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00076 2.6E-08 54.3 2.3 43 292-335 70-132 (133)
53 3knv_A TNF receptor-associated 96.6 0.00028 9.5E-09 58.5 -0.7 36 292-328 29-76 (141)
54 4ap4_A E3 ubiquitin ligase RNF 96.3 0.0011 3.7E-08 53.3 1.4 36 294-330 7-60 (133)
55 3hcs_A TNF receptor-associated 96.1 0.0018 6.2E-08 54.9 1.8 39 291-330 15-65 (170)
56 4a0k_B E3 ubiquitin-protein li 96.1 0.0011 3.9E-08 53.1 0.4 24 305-329 84-111 (117)
57 3vk6_A E3 ubiquitin-protein li 95.9 0.0044 1.5E-07 47.9 2.8 29 305-334 20-53 (101)
58 3dpl_R Ring-box protein 1; ubi 95.8 0.0029 9.9E-08 49.8 1.5 24 305-329 73-100 (106)
59 1wgm_A Ubiquitin conjugation f 95.7 0.0059 2E-07 47.2 3.0 38 292-330 20-69 (98)
60 2c2l_A CHIP, carboxy terminus 95.6 0.0047 1.6E-07 55.9 2.5 37 293-330 207-255 (281)
61 2kr4_A Ubiquitin conjugation f 95.6 0.0062 2.1E-07 45.7 2.7 38 292-330 12-60 (85)
62 2kre_A Ubiquitin conjugation f 95.4 0.0062 2.1E-07 47.3 2.1 38 292-330 27-75 (100)
63 1wim_A KIAA0161 protein; ring 95.0 0.005 1.7E-07 46.9 0.4 33 294-327 5-61 (94)
64 2f42_A STIP1 homology and U-bo 94.7 0.038 1.3E-06 47.5 5.2 37 293-330 105-153 (179)
65 3htk_C E3 SUMO-protein ligase 93.9 0.021 7.3E-07 51.8 2.2 37 293-330 180-232 (267)
66 2d8s_A Cellular modulator of i 93.6 0.032 1.1E-06 41.4 2.2 37 293-330 14-70 (80)
67 2yu4_A E3 SUMO-protein ligase 91.4 0.087 3E-06 40.0 2.2 34 293-327 6-59 (94)
68 2ct0_A Non-SMC element 1 homol 90.2 0.28 9.6E-06 35.7 3.9 41 290-331 11-65 (74)
69 3k1l_B Fancl; UBC, ring, RWD, 88.6 0.14 4.7E-06 48.3 1.5 39 292-331 306-374 (381)
70 2zet_C Melanophilin; complex, 84.8 1.4 4.7E-05 36.7 5.4 34 293-327 67-117 (153)
71 2ko5_A Ring finger protein Z; 83.0 0.28 9.7E-06 37.2 0.4 41 294-334 28-77 (99)
72 1vyx_A ORF K3, K3RING; zinc-bi 79.1 0.83 2.8E-05 31.6 1.7 36 293-329 5-58 (60)
73 1zbd_B Rabphilin-3A; G protein 77.7 2.8 9.7E-05 33.9 4.8 34 293-327 54-107 (134)
74 2knc_B Integrin beta-3; transm 77.1 13 0.00045 27.1 7.8 22 240-261 31-52 (79)
75 2a20_A Regulating synaptic mem 76.6 0.24 8.3E-06 34.2 -1.6 19 291-309 6-28 (62)
76 2knc_B Integrin beta-3; transm 75.5 13 0.00044 27.1 7.4 33 226-258 14-46 (79)
77 2bay_A PRE-mRNA splicing facto 69.9 1.3 4.4E-05 30.7 0.8 39 295-334 4-56 (61)
78 2jne_A Hypothetical protein YF 40.8 6.1 0.00021 30.1 0.1 40 291-330 29-73 (101)
79 1weo_A Cellulose synthase, cat 31.9 25 0.00085 26.3 2.2 36 293-329 15-69 (93)
80 1z2q_A LM5-1; membrane protein 30.0 23 0.0008 25.8 1.8 25 292-317 19-54 (84)
81 2jrp_A Putative cytoplasmic pr 29.5 15 0.00051 27.0 0.6 11 320-330 53-63 (81)
82 1s4x_A Integrin beta-3; cell a 28.8 36 0.0012 24.0 2.5 26 233-258 11-37 (67)
83 3kdf_D Replication protein A 3 28.7 1.6E+02 0.0054 22.9 6.8 23 171-194 78-100 (132)
84 1joc_A EEA1, early endosomal a 27.2 23 0.00078 28.0 1.4 23 294-317 69-102 (125)
85 3pwf_A Rubrerythrin; non heme 27.0 25 0.00085 29.4 1.7 26 305-334 144-169 (170)
86 2yw8_A RUN and FYVE domain-con 26.5 28 0.00096 25.2 1.7 23 294-317 19-52 (82)
87 1mm2_A MI2-beta; PHD, zinc fin 25.6 45 0.0015 22.6 2.6 35 292-328 7-57 (61)
88 1lko_A Rubrerythrin all-iron(I 25.3 26 0.0009 29.7 1.6 25 305-333 161-186 (191)
89 2cs3_A Protein C14ORF4, MY039 23.9 48 0.0017 24.2 2.5 25 292-317 13-48 (93)
90 2rdd_B UPF0092 membrane protei 23.5 42 0.0014 20.5 1.8 21 10-30 11-31 (37)
91 3t7l_A Zinc finger FYVE domain 23.2 31 0.0011 25.5 1.4 24 293-317 19-53 (90)
92 1x4u_A Zinc finger, FYVE domai 23.1 30 0.001 25.1 1.3 24 293-317 13-47 (84)
93 2l7x_A Envelope glycoprotein; 23.1 37 0.0013 24.1 1.7 25 294-319 5-41 (77)
94 1vfy_A Phosphatidylinositol-3- 23.0 32 0.0011 24.3 1.4 22 295-317 12-44 (73)
95 2jun_A Midline-1; B-BOX, TRIM, 22.9 29 0.00098 25.7 1.2 22 295-317 4-35 (101)
96 2vrw_B P95VAV, VAV1, proto-onc 22.7 94 0.0032 29.0 5.1 31 292-323 355-397 (406)
97 3mjh_B Early endosome antigen 21.8 27 0.00091 21.2 0.6 11 320-330 7-17 (34)
98 2k1k_A Ephrin type-A receptor 21.7 40 0.0014 20.9 1.5 12 10-22 26-37 (38)
99 1wfk_A Zinc finger, FYVE domai 21.5 31 0.0011 25.4 1.1 23 294-317 9-42 (88)
100 4rxn_A Rubredoxin; electron tr 20.9 38 0.0013 22.8 1.3 15 320-334 38-52 (54)
101 2hw2_A Rifampin ADP-ribosyl tr 20.9 45 0.0016 26.8 2.0 46 118-185 67-112 (143)
102 1e8j_A Rubredoxin; iron-sulfur 20.6 41 0.0014 22.3 1.5 14 320-333 38-51 (52)
103 3nw0_A Non-structural maintena 20.6 46 0.0016 29.2 2.3 37 294-331 180-230 (238)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=93.99 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=43.2
Q ss_pred CCCcccccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeee
Q 019651 290 DRVMPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFR 336 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~ 336 (337)
+..+...|+||++++ |||+++|..|+..+..||+||++|...+++|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 455567999999988 99999999999999999999999999999986
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=3.9e-12 Score=91.84 Aligned_cols=46 Identities=33% Similarity=0.907 Sum_probs=41.4
Q ss_pred Ccccccccccccc---------ccCcccchhhhhcCC----CCccccccccceEEeeeC
Q 019651 292 VMPDLCVICLEQE---------CGHLCCCLICSSRLT----NCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 292 ~~~~~C~iC~~~~---------CgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~~~~~ 337 (337)
+....|+||++++ |||+++|..|+.++. .||+||++|..++++|.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 3456999999975 999999999999885 899999999999999975
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=3.3e-11 Score=87.22 Aligned_cols=45 Identities=38% Similarity=0.907 Sum_probs=40.3
Q ss_pred cccccccccccc---------ccCcccchhhhhcCC----CCccccccccceEEeeeC
Q 019651 293 MPDLCVICLEQE---------CGHLCCCLICSSRLT----NCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 293 ~~~~C~iC~~~~---------CgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~~~~~ 337 (337)
++..|+||++++ |||+++|..|+.++. .||+||++|.+++++|.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 456899999987 999999999998874 699999999999999975
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.99 E-value=2.1e-10 Score=86.48 Aligned_cols=44 Identities=41% Similarity=1.139 Sum_probs=40.8
Q ss_pred ccccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeeeC
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~~ 337 (337)
...|+||++++ |||.++|..|+..+..||+||.+|...+++|.+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 35899999988 999999999999999999999999999999863
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=2.8e-10 Score=84.59 Aligned_cols=45 Identities=31% Similarity=0.851 Sum_probs=41.0
Q ss_pred cccccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeeeC
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~~ 337 (337)
+...|+||++.. |||.++|..|...+..||+||.+|...+++|.|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 346899999987 999988999999999999999999999999975
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=85.91 Aligned_cols=45 Identities=33% Similarity=0.888 Sum_probs=41.4
Q ss_pred cccccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeeeC
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~~ 337 (337)
+...|+||++.. |||.++|..|..++..||+||.+|...+++|.|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 345899999987 999988999999999999999999999999975
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=1.2e-08 Score=97.36 Aligned_cols=45 Identities=42% Similarity=1.014 Sum_probs=40.5
Q ss_pred cccccccccccc-------ccCcccchhhhhcCCCCccccccccceEEeeeC
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 337 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~~~~ 337 (337)
+...|+||++.+ |||.|+|..|+..+..||+||.+|...+++|.|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 346899999987 999999999999999999999999999999975
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2e-06 Score=62.68 Aligned_cols=39 Identities=33% Similarity=0.896 Sum_probs=32.3
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 34556999999976 99995 99999875 489999999874
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.6e-06 Score=61.41 Aligned_cols=39 Identities=36% Similarity=0.939 Sum_probs=31.7
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-------CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34556999999976 99996 99998764 279999999864
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.02 E-value=1.6e-06 Score=62.43 Aligned_cols=42 Identities=40% Similarity=1.009 Sum_probs=34.6
Q ss_pred ccccccccccc--------ccCcccchhhhhcC----CCCccccccccceEEeee
Q 019651 294 PDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 336 (337)
Q Consensus 294 ~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~~~ 336 (337)
...|.||++.. |||.+ |..|..+. ..||+||.++...++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 46899999975 99995 99998653 589999999998776543
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.7e-06 Score=62.73 Aligned_cols=44 Identities=27% Similarity=0.763 Sum_probs=36.1
Q ss_pred CCcccccccccccc------ccCcccchhhhhcC----CCCccccccccceEEee
Q 019651 291 RVMPDLCVICLEQE------CGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 335 (337)
Q Consensus 291 ~~~~~~C~iC~~~~------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~~ 335 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++.....+|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccCcccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34456999999986 99995 99999865 58999999998766555
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=3.5e-06 Score=62.94 Aligned_cols=40 Identities=25% Similarity=0.675 Sum_probs=32.4
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC----CCCccccccccce
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQV 331 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 331 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccccc
Confidence 34456999999876 99997 99998764 5899999998743
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.96 E-value=3.3e-06 Score=62.52 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=31.9
Q ss_pred CCCcccccccccccc----------ccCcccchhhhhcC----CCCccccccccce
Q 019651 290 DRVMPDLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCRRRIDQV 331 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 331 (337)
...+...|.||++.. |||.+ |..|.... ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCCc
Confidence 344567999997653 99985 99998753 5899999998753
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.8e-06 Score=62.29 Aligned_cols=43 Identities=30% Similarity=0.708 Sum_probs=34.1
Q ss_pred CCCcccccccccccc----------ccCcccchhhhhcC----CCCccccccccceEE
Q 019651 290 DRVMPDLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCRRRIDQVVR 333 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 333 (337)
+..+...|.||++.. |||.+ |..|.... ..||+||.++....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 344567999999874 99995 99998753 589999999987554
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.94 E-value=3.4e-06 Score=60.92 Aligned_cols=42 Identities=31% Similarity=0.756 Sum_probs=32.8
Q ss_pred CCcccccccccccc----------ccCcccchhhhhcC----CCCccccccccceEE
Q 019651 291 RVMPDLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCRRRIDQVVR 333 (337)
Q Consensus 291 ~~~~~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 333 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++...+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 34556999997642 99996 99998754 589999999987553
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5.3e-06 Score=59.59 Aligned_cols=39 Identities=33% Similarity=0.887 Sum_probs=31.3
Q ss_pred CCcccccccccccc--------------ccCcccchhhhhcC----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE--------------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~--------------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567999999842 99976 99999764 589999999864
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.86 E-value=5.2e-06 Score=62.06 Aligned_cols=43 Identities=30% Similarity=0.739 Sum_probs=34.0
Q ss_pred Ccccccccccccc-----------ccCcccchhhhhcC-----CCCccccccccceEEee
Q 019651 292 VMPDLCVICLEQE-----------CGHLCCCLICSSRL-----TNCPLCRRRIDQVVRTF 335 (337)
Q Consensus 292 ~~~~~C~iC~~~~-----------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~~~ 335 (337)
+++..|+||++.. |||.+ |..|..++ ..||+||.++......|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3456899999953 99996 99998775 37999999998754443
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=7.6e-06 Score=59.73 Aligned_cols=41 Identities=32% Similarity=0.613 Sum_probs=33.0
Q ss_pred CCCcccccccccccc--------ccCcccchhhhhcC----CCCccccccccce
Q 019651 290 DRVMPDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQV 331 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 331 (337)
+..+...|.||++.. |||.+ |..|.... ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 344567999999965 99997 99998653 5899999998754
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.84 E-value=1e-05 Score=59.74 Aligned_cols=39 Identities=33% Similarity=0.707 Sum_probs=31.5
Q ss_pred CCcccccccccccc-------ccCcccchhhhhc-----------CCCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSR-----------LTNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~-----------~~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|... ...||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34456999999866 99986 9999975 3479999999864
No 20
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.84 E-value=7.1e-06 Score=57.05 Aligned_cols=37 Identities=24% Similarity=0.543 Sum_probs=30.6
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |||.+ |..|.... ..||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 456899999865 99996 89998765 489999999864
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.80 E-value=6.8e-06 Score=58.07 Aligned_cols=41 Identities=32% Similarity=0.874 Sum_probs=33.0
Q ss_pred ccccccccccc--------------ccCcccchhhhhcC----CCCcccccccc--ceEEee
Q 019651 294 PDLCVICLEQE--------------CGHLCCCLICSSRL----TNCPLCRRRID--QVVRTF 335 (337)
Q Consensus 294 ~~~C~iC~~~~--------------CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~~~ 335 (337)
...|.||++.. |||.+ |..|..+. ..||+||.++. ...++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 45899999841 99996 99998754 58999999997 466666
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=2.1e-05 Score=58.69 Aligned_cols=39 Identities=36% Similarity=0.792 Sum_probs=32.0
Q ss_pred CCcccccccccccc-------ccCcccchhhhhc----------CCCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSR----------LTNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~----------~~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34556999999975 99996 9999865 4589999999874
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=57.33 Aligned_cols=39 Identities=28% Similarity=0.576 Sum_probs=31.6
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34457999999865 99996 99998743 489999999864
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.74 E-value=2.3e-05 Score=58.47 Aligned_cols=39 Identities=36% Similarity=0.692 Sum_probs=31.8
Q ss_pred CCcccccccccccc-------ccCcccchhhhhc----------CCCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSR----------LTNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~----------~~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|... ...||+||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34556999999875 99986 9999865 4589999999874
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=1.5e-05 Score=60.11 Aligned_cols=40 Identities=33% Similarity=0.765 Sum_probs=31.5
Q ss_pred CCCccccccccccc-------c----ccCcccchhhhhcC-------CCCccccccccc
Q 019651 290 DRVMPDLCVICLEQ-------E----CGHLCCCLICSSRL-------TNCPLCRRRIDQ 330 (337)
Q Consensus 290 ~~~~~~~C~iC~~~-------~----CgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 330 (337)
...+...|.||++. + |||.+ |..|.... ..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 33445689999985 3 99987 99998764 489999998753
No 26
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.72 E-value=1e-05 Score=55.49 Aligned_cols=36 Identities=39% Similarity=0.848 Sum_probs=29.5
Q ss_pred ccccccccccc-----------ccCcccchhhhhcC----CCCccccccccc
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
...|.||++.. |||.+ |..|..+. ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46899999852 99975 99998765 589999998863
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=9.9e-06 Score=59.54 Aligned_cols=38 Identities=29% Similarity=0.749 Sum_probs=30.7
Q ss_pred Ccccccccccccc----------ccCcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.+...|.||++.. |||.+ |..|..+. ..||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4456999999653 99995 89998764 589999998864
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.70 E-value=9e-06 Score=58.81 Aligned_cols=42 Identities=31% Similarity=0.843 Sum_probs=32.6
Q ss_pred cccccccccccc--------------ccCcccchhhhhcC----CCCccccccccc--eEEee
Q 019651 293 MPDLCVICLEQE--------------CGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 335 (337)
Q Consensus 293 ~~~~C~iC~~~~--------------CgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~~~ 335 (337)
++..|.||++.. |||.+ |..|..+. ..||+||.++.. ..++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 456899999741 99986 99998654 589999999873 44554
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.69 E-value=8.3e-06 Score=67.42 Aligned_cols=38 Identities=34% Similarity=0.857 Sum_probs=31.0
Q ss_pred ccccccccccc-------ccCcccchhhhhcC----CCCccccccccceE
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQVV 332 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 332 (337)
+..|+||++.. |||.+ |..|.... ..||+||.+|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 34799999976 99975 99998753 48999999997653
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.69 E-value=1.7e-05 Score=54.45 Aligned_cols=35 Identities=34% Similarity=0.792 Sum_probs=28.8
Q ss_pred ccccccccccc-----------ccCcccchhhhhcC----CCCcccccccc
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSRL----TNCPLCRRRID 329 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~~----~~CP~Cr~~i~ 329 (337)
...|.||++.. |||.+ |..|..+. ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 46899999863 99986 99998764 48999999874
No 31
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.69 E-value=1.5e-05 Score=76.65 Aligned_cols=40 Identities=40% Similarity=0.949 Sum_probs=34.1
Q ss_pred cccccccccc-------ccCcccchhhhhc-----CCCCccccccccceEEee
Q 019651 295 DLCVICLEQE-------CGHLCCCLICSSR-----LTNCPLCRRRIDQVVRTF 335 (337)
Q Consensus 295 ~~C~iC~~~~-------CgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~~~~ 335 (337)
..|+||++.. |||.+ |..|... ...||+||.++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 5899999977 99997 9999864 468999999999876654
No 32
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.64 E-value=1.4e-05 Score=61.29 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=30.3
Q ss_pred Ccccccccccccc----------ccCcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE----------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~----------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.++..|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 4456899998653 99986 99998753 489999998865
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.64 E-value=1.4e-05 Score=56.93 Aligned_cols=36 Identities=33% Similarity=0.796 Sum_probs=29.6
Q ss_pred ccccccccc----cc--------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 294 PDLCVICLE----QE--------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~----~~--------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+..|.||++ ++ |||.+ |..|..+. ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 358999999 22 99997 99998765 479999999864
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.58 E-value=3.4e-05 Score=56.58 Aligned_cols=39 Identities=28% Similarity=0.615 Sum_probs=30.9
Q ss_pred CCCcccccccccccc--------ccCcccchhhhhcC------CCCcccccccc
Q 019651 290 DRVMPDLCVICLEQE--------CGHLCCCLICSSRL------TNCPLCRRRID 329 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~Cr~~i~ 329 (337)
+..+...|.||++.. |||.+ |..|.... ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344567999999865 99987 99998653 48999999754
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.46 E-value=3.5e-05 Score=61.35 Aligned_cols=39 Identities=36% Similarity=0.829 Sum_probs=31.6
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34456999999865 99996 99999765 379999999863
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.38 E-value=7.3e-05 Score=56.94 Aligned_cols=37 Identities=30% Similarity=0.680 Sum_probs=30.0
Q ss_pred CCcccccccccccc--------ccCcccchhhhhcC------CCCccccccc
Q 019651 291 RVMPDLCVICLEQE--------CGHLCCCLICSSRL------TNCPLCRRRI 328 (337)
Q Consensus 291 ~~~~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~Cr~~i 328 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34557999999854 99997 99998643 4899999997
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.29 E-value=4.9e-05 Score=61.37 Aligned_cols=37 Identities=32% Similarity=0.740 Sum_probs=30.3
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+...|+||++.. |||.+ |..|.... ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345899999865 99997 99998643 389999999975
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=50.25 Aligned_cols=33 Identities=39% Similarity=0.975 Sum_probs=26.6
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-------CCCccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLC 324 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~C 324 (337)
..+...|.||++.. |||.+ |..|.... ..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 34556999999976 99996 99998654 479998
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.28 E-value=5e-05 Score=59.13 Aligned_cols=37 Identities=38% Similarity=0.992 Sum_probs=30.4
Q ss_pred cccccccccccc--------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 346899999965 99997 99998753 489999999853
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.20 E-value=9.1e-05 Score=58.29 Aligned_cols=37 Identities=30% Similarity=0.742 Sum_probs=31.0
Q ss_pred cccccccccccc--------ccCcccchhhhhcC----CCCccccccccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 456999999964 99997 99998654 589999999875
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.19 E-value=7.2e-05 Score=57.86 Aligned_cols=37 Identities=32% Similarity=0.774 Sum_probs=30.4
Q ss_pred cccccccccccc--------ccCcccchhhhhcC----CCCccccccccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 346899999864 99997 99998653 489999999874
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00029 Score=49.60 Aligned_cols=33 Identities=42% Similarity=1.042 Sum_probs=26.4
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-------CCCccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLC 324 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~C 324 (337)
..+...|.||++.. |||.+ |..|..+. ..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 34566999999875 99996 99998653 379998
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.18 E-value=6.7e-05 Score=63.64 Aligned_cols=38 Identities=32% Similarity=0.760 Sum_probs=30.6
Q ss_pred Ccccccccccccc--------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE--------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~--------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
.+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3445999999865 99987 99998753 479999999853
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.16 E-value=0.00011 Score=57.91 Aligned_cols=36 Identities=42% Similarity=1.006 Sum_probs=29.5
Q ss_pred ccccccccccc-------ccCcccchhhhhcC-------CCCccccccccc
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL-------TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 330 (337)
...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 35899999865 99987 99998653 279999998874
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.11 E-value=0.00015 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.1
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+...|.||++-. |||.+ |..|.... ..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456999999855 99997 99998643 479999999864
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.08 E-value=0.00012 Score=58.11 Aligned_cols=36 Identities=31% Similarity=0.864 Sum_probs=28.5
Q ss_pred cccccccccc-----------------------c--ccCcccchhhhhcC---------CCCccccccccc
Q 019651 294 PDLCVICLEQ-----------------------E--CGHLCCCLICSSRL---------TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~-----------------------~--CgH~~~C~~C~~~~---------~~CP~Cr~~i~~ 330 (337)
+..|.||++. . |||.+ |..|.... ..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3589999886 2 99987 99997542 389999998864
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00013 Score=61.12 Aligned_cols=37 Identities=38% Similarity=0.775 Sum_probs=30.4
Q ss_pred ccccccccccc-------ccCcccchhhhhcC-----CCCccccccccce
Q 019651 294 PDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 331 (337)
...|.||++.. |||.+ |..|.... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45899999865 99987 99998654 3799999998753
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.02 E-value=0.0002 Score=57.29 Aligned_cols=39 Identities=28% Similarity=0.579 Sum_probs=31.9
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34456999999865 99997 99998654 389999999875
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.98 E-value=0.00024 Score=56.77 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=30.4
Q ss_pred cccccccccccc--------ccCcccchhhhhcC--CCCcccccccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL--TNCPLCRRRID 329 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~--~~CP~Cr~~i~ 329 (337)
+...|.||++.. |||.+ |..|.... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 346899999854 99997 99999876 57999999985
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.72 E-value=0.00032 Score=55.74 Aligned_cols=37 Identities=38% Similarity=0.721 Sum_probs=30.6
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |||.+ |..|.... ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 456899999976 99997 99998643 489999999864
No 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00053 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=20.6
Q ss_pred ccCcccchhhhhcC----CCCccccccccc
Q 019651 305 CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 305 CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
|||.+ +..|..+- ..||+||+++..
T Consensus 48 C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 48 CNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp TSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 99997 89998752 489999998753
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.61 E-value=0.00076 Score=54.26 Aligned_cols=43 Identities=30% Similarity=0.825 Sum_probs=33.9
Q ss_pred Ccccccccccccc--------------ccCcccchhhhhc----CCCCcccccccc--ceEEee
Q 019651 292 VMPDLCVICLEQE--------------CGHLCCCLICSSR----LTNCPLCRRRID--QVVRTF 335 (337)
Q Consensus 292 ~~~~~C~iC~~~~--------------CgH~~~C~~C~~~----~~~CP~Cr~~i~--~~~~~~ 335 (337)
++...|.||++.. |||.+ |..|... .+.||+||.++. ...++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 3456899999842 99997 9999865 369999999987 456666
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.56 E-value=0.00028 Score=58.53 Aligned_cols=36 Identities=31% Similarity=0.731 Sum_probs=29.6
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC-----CCCccccccc
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRI 328 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i 328 (337)
.+.-.|.||++-. |||.+ |..|.... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4456999999865 99997 99998764 3899999976
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.31 E-value=0.0011 Score=53.35 Aligned_cols=36 Identities=36% Similarity=1.011 Sum_probs=29.2
Q ss_pred ccccccccccc--------------ccCcccchhhhhcC----CCCccccccccc
Q 019651 294 PDLCVICLEQE--------------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 294 ~~~C~iC~~~~--------------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
...|.||++.. |||.+ |..|.... ..||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 46899998742 99986 99998653 489999999874
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.10 E-value=0.0018 Score=54.89 Aligned_cols=39 Identities=28% Similarity=0.579 Sum_probs=32.0
Q ss_pred CCcccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
..+...|.||++.. |||.+ |..|..+. ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 34556999999865 99997 99998764 389999999875
No 56
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.09 E-value=0.0011 Score=53.12 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=0.0
Q ss_pred ccCcccchhhhhcC----CCCcccccccc
Q 019651 305 CGHLCCCLICSSRL----TNCPLCRRRID 329 (337)
Q Consensus 305 CgH~~~C~~C~~~~----~~CP~Cr~~i~ 329 (337)
|+|.+ +..|...- ..||+||++..
T Consensus 84 C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 84 CNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------
T ss_pred cCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 99997 88998763 48999999853
No 57
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.86 E-value=0.0044 Score=47.90 Aligned_cols=29 Identities=24% Similarity=0.691 Sum_probs=23.5
Q ss_pred ccCcccchhhhhc-----CCCCccccccccceEEe
Q 019651 305 CGHLCCCLICSSR-----LTNCPLCRRRIDQVVRT 334 (337)
Q Consensus 305 CgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~~~ 334 (337)
|.|++ |.+|+.. .+.||+|+.+|..+-..
T Consensus 20 CkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 20 CKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp TCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 99965 9999954 46899999999876543
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.78 E-value=0.0029 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=19.7
Q ss_pred ccCcccchhhhhcC----CCCcccccccc
Q 019651 305 CGHLCCCLICSSRL----TNCPLCRRRID 329 (337)
Q Consensus 305 CgH~~~C~~C~~~~----~~CP~Cr~~i~ 329 (337)
|+|.+ +..|...- ..||+||+.+.
T Consensus 73 C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 73 CNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp TSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred cCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 99997 89998762 48999999853
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.69 E-value=0.0059 Score=47.22 Aligned_cols=38 Identities=13% Similarity=-0.081 Sum_probs=29.9
Q ss_pred Ccccccccccccc-------cc-CcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE-------CG-HLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------Cg-H~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.+.-.|+||++-. || |.+ |..|.... ..||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3456999999854 99 987 88997543 489999999864
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.61 E-value=0.0047 Score=55.91 Aligned_cols=37 Identities=16% Similarity=-0.065 Sum_probs=29.2
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+.-.|+||++-. |||.+ |..|.... ..||+||.+++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456899998855 99997 89997642 349999999863
No 61
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.60 E-value=0.0062 Score=45.71 Aligned_cols=38 Identities=11% Similarity=-0.091 Sum_probs=30.1
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.+.-.|+||++-. |||.+ |..|.... ..||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3456999999854 99996 89997543 589999998864
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.38 E-value=0.0062 Score=47.27 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=30.0
Q ss_pred Ccccccccccccc-------ccCcccchhhhhcC----CCCccccccccc
Q 019651 292 VMPDLCVICLEQE-------CGHLCCCLICSSRL----TNCPLCRRRIDQ 330 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 330 (337)
.+.-.|+||++-. |||.+ |..|.... ..||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456999999854 99996 99997543 489999999864
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.98 E-value=0.005 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.890 Sum_probs=26.2
Q ss_pred ccccccccccc----------ccCcccchhhhhcC------------CCCcc--cccc
Q 019651 294 PDLCVICLEQE----------CGHLCCCLICSSRL------------TNCPL--CRRR 327 (337)
Q Consensus 294 ~~~C~iC~~~~----------CgH~~~C~~C~~~~------------~~CP~--Cr~~ 327 (337)
...|.||++.. |||.+ |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999753 99997 99996431 27999 9988
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.68 E-value=0.038 Score=47.47 Aligned_cols=37 Identities=16% Similarity=-0.077 Sum_probs=28.9
Q ss_pred cccccccccccc-------ccCcccchhhhhcC-----CCCccccccccc
Q 019651 293 MPDLCVICLEQE-------CGHLCCCLICSSRL-----TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~-------CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 330 (337)
+.-.|+||++-. |||.+ |..|.... ..||+||.+++.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456999999854 99987 89996542 259999998864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.021 Score=51.83 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=28.9
Q ss_pred cccccccccccc--------ccCcccchhhhhcC------CCCcc--ccccccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL------TNCPL--CRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~--Cr~~i~~ 330 (337)
..-.|+||++-. |||.+ |..|.... ..||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 344899999855 99986 99998654 26999 9998753
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.58 E-value=0.032 Score=41.38 Aligned_cols=37 Identities=27% Similarity=0.664 Sum_probs=27.9
Q ss_pred cccccccccccc---------cc-----CcccchhhhhcC------CCCccccccccc
Q 019651 293 MPDLCVICLEQE---------CG-----HLCCCLICSSRL------TNCPLCRRRIDQ 330 (337)
Q Consensus 293 ~~~~C~iC~~~~---------Cg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 330 (337)
+...|.||++.. |+ |.+ ...|..+- ..||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456899999642 75 887 77898653 389999998864
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.43 E-value=0.087 Score=39.98 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=26.1
Q ss_pred cccccccccccc--------ccCcccchhhhhcC----------CCCcc--cccc
Q 019651 293 MPDLCVICLEQE--------CGHLCCCLICSSRL----------TNCPL--CRRR 327 (337)
Q Consensus 293 ~~~~C~iC~~~~--------CgH~~~C~~C~~~~----------~~CP~--Cr~~ 327 (337)
+.-.|+||++-. |||.+ |..|.... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 346899999854 99997 89996432 38999 9855
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.24 E-value=0.28 Score=35.73 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=29.6
Q ss_pred CCCcccccccccccc--------ccCcccchhhhhc----C--CCCccccccccce
Q 019651 290 DRVMPDLCVICLEQE--------CGHLCCCLICSSR----L--TNCPLCRRRIDQV 331 (337)
Q Consensus 290 ~~~~~~~C~iC~~~~--------CgH~~~C~~C~~~----~--~~CP~Cr~~i~~~ 331 (337)
-.+....|.||++.- |+|.+ =..|..+ - ..||+||......
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 444567999999865 88876 3577753 1 5899999987643
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=88.64 E-value=0.14 Score=48.34 Aligned_cols=39 Identities=26% Similarity=0.720 Sum_probs=28.3
Q ss_pred Ccccccccccccc---------------ccCcccchhhhhc----C-----------CCCccccccccce
Q 019651 292 VMPDLCVICLEQE---------------CGHLCCCLICSSR----L-----------TNCPLCRRRIDQV 331 (337)
Q Consensus 292 ~~~~~C~iC~~~~---------------CgH~~~C~~C~~~----~-----------~~CP~Cr~~i~~~ 331 (337)
+....|.||++.. |+|.+ -..|..+ . ..||.||++|+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4466999999732 88887 5677633 1 2699999999754
No 70
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=84.83 E-value=1.4 Score=36.67 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=24.7
Q ss_pred cccccccccccc------------ccCcccchhhhhcCC-----CCcccccc
Q 019651 293 MPDLCVICLEQE------------CGHLCCCLICSSRLT-----NCPLCRRR 327 (337)
Q Consensus 293 ~~~~C~iC~~~~------------CgH~~~C~~C~~~~~-----~CP~Cr~~ 327 (337)
++..|.+|...- |.|.+ |..|....+ .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 467999999973 77776 888885443 57777654
No 71
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.96 E-value=0.28 Score=37.22 Aligned_cols=41 Identities=29% Similarity=0.844 Sum_probs=32.4
Q ss_pred ccccccccccc-----ccCcccchhhhhcC----CCCccccccccceEEe
Q 019651 294 PDLCVICLEQE-----CGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 334 (337)
Q Consensus 294 ~~~C~iC~~~~-----CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~~ 334 (337)
...|+.|+-.. |.--.+|..|...| ..||||..+....+++
T Consensus 28 ~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34899999877 66444699999887 3899999998776654
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=79.11 E-value=0.83 Score=31.60 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=23.0
Q ss_pred cccccccccccc---------ccC---cccchhhhhc------CCCCcccccccc
Q 019651 293 MPDLCVICLEQE---------CGH---LCCCLICSSR------LTNCPLCRRRID 329 (337)
Q Consensus 293 ~~~~C~iC~~~~---------CgH---~~~C~~C~~~------~~~CP~Cr~~i~ 329 (337)
+...|.||++.. |.| .+ =..|..+ -..||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999743 433 21 2356543 248999998864
No 73
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=77.66 E-value=2.8 Score=33.92 Aligned_cols=34 Identities=26% Similarity=0.708 Sum_probs=23.3
Q ss_pred cccccccccccc------------ccCcccchhhhhcCC--------CCcccccc
Q 019651 293 MPDLCVICLEQE------------CGHLCCCLICSSRLT--------NCPLCRRR 327 (337)
Q Consensus 293 ~~~~C~iC~~~~------------CgH~~~C~~C~~~~~--------~CP~Cr~~ 327 (337)
....|.+|.... |.|.+ |..|..... .|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 357999998866 66665 777776541 47777653
No 74
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=77.15 E-value=13 Score=27.08 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019651 240 AKRVIRCILQRKRRWELRRRVL 261 (337)
Q Consensus 240 ~~~~~r~~~~~~~~~~~~~~~~ 261 (337)
.|+++..+..+|+-++.+++..
T Consensus 31 iwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 31 IWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666766666665333
No 75
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=76.57 E-value=0.24 Score=34.20 Aligned_cols=19 Identities=37% Similarity=0.903 Sum_probs=15.4
Q ss_pred CCcccccccccccc----ccCcc
Q 019651 291 RVMPDLCVICLEQE----CGHLC 309 (337)
Q Consensus 291 ~~~~~~C~iC~~~~----CgH~~ 309 (337)
..+...|.||+... |||.|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C 28 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNC 28 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEB
T ss_pred cCCcchhhhhccceeccCCCccc
Confidence 34567999999987 99985
No 76
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.49 E-value=13 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=20.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019651 226 YASFGLTIFGAFLIAKRVIRCILQRKRRWELRR 258 (337)
Q Consensus 226 ~~~i~~~~~G~~ll~~~~~r~~~~~~~~~~~~~ 258 (337)
+++++.+++.++++...++|.+....-++|.++
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~DrrE~~k 46 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDRKEFAK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666777766665666655
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=69.88 E-value=1.3 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=29.2
Q ss_pred cccccccccc--------ccCcccchhhhhcC----CCCccccccccc--eEEe
Q 019651 295 DLCVICLEQE--------CGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRT 334 (337)
Q Consensus 295 ~~C~iC~~~~--------CgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~~ 334 (337)
-.|+||++-. |||.+ |..|..+. .+||+++.+... .+++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 4788888744 89997 88888764 479999999853 4444
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.79 E-value=6.1 Score=30.06 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=27.1
Q ss_pred CCcccccccccccc--ccCcccchhhhhcC---CCCccccccccc
Q 019651 291 RVMPDLCVICLEQE--CGHLCCCLICSSRL---TNCPLCRRRIDQ 330 (337)
Q Consensus 291 ~~~~~~C~iC~~~~--CgH~~~C~~C~~~~---~~CP~Cr~~i~~ 330 (337)
..++..|+.|...- =|....|..|.... ..||-|.++...
T Consensus 29 ~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 29 SHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp --CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHH
Confidence 34668999998765 33333478887765 379999888764
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=31.87 E-value=25 Score=26.28 Aligned_cols=36 Identities=36% Similarity=0.829 Sum_probs=26.1
Q ss_pred cccccccccccc--------------ccCcccchhhhhcC-----CCCcccccccc
Q 019651 293 MPDLCVICLEQE--------------CGHLCCCLICSSRL-----TNCPLCRRRID 329 (337)
Q Consensus 293 ~~~~C~iC~~~~--------------CgH~~~C~~C~~~~-----~~CP~Cr~~i~ 329 (337)
..+.|-||-+.- |+-- +|..|..-. ..||.|..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCccc
Confidence 446999999984 4433 488887543 48999998875
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.03 E-value=23 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=19.6
Q ss_pred Ccccccccccccc-----------ccCcccchhhhhc
Q 019651 292 VMPDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 292 ~~~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
.+...|.+|.... ||+.+ |..|+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~-C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVL-CGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEE-CTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEE-ChHHhCC
Confidence 3445899998866 99987 9999865
No 81
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.47 E-value=15 Score=27.00 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=6.1
Q ss_pred CCccccccccc
Q 019651 320 NCPLCRRRIDQ 330 (337)
Q Consensus 320 ~CP~Cr~~i~~ 330 (337)
.|+.|..-|.+
T Consensus 53 FC~~C~~LiSk 63 (81)
T 2jrp_A 53 FCQNGHGLISK 63 (81)
T ss_dssp CCTTTTCCCCT
T ss_pred eeccCCCEeec
Confidence 55556555554
No 82
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=28.80 E-value=36 Score=23.99 Aligned_cols=26 Identities=12% Similarity=-0.139 Sum_probs=10.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019651 233 IFGAFLI-AKRVIRCILQRKRRWELRR 258 (337)
Q Consensus 233 ~~G~~ll-~~~~~r~~~~~~~~~~~~~ 258 (337)
++|+++| .|+++-.+..+|+-++.++
T Consensus 11 liGl~lLliwKll~~i~DrrEyakFE~ 37 (67)
T 1s4x_A 11 SGLVPRGSHMKLLITIHDRKEFAKFEE 37 (67)
T ss_dssp ----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555554 5666666666665555544
No 83
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=28.70 E-value=1.6e+02 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=17.4
Q ss_pred eeecCCCeEEEEEEEEECCCcceE
Q 019651 171 RLLPTGTSLTVVGEAVKDDIGTVR 194 (337)
Q Consensus 171 ~~L~~G~~ltvvGe~~~d~~G~l~ 194 (337)
..+++|+-+.|.|.+..- +|...
T Consensus 78 ~~~~~g~yVrV~G~l~~f-~g~~q 100 (132)
T 3kdf_D 78 TVVPPETYVKVAGHLRSF-QNKKS 100 (132)
T ss_dssp CCCCTTCEEEEEEEEEEE-TTEEE
T ss_pred ccccCCCEEEEEEEEEeE-CCEEE
Confidence 457899999999998654 45444
No 84
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.16 E-value=23 Score=28.01 Aligned_cols=23 Identities=30% Similarity=0.843 Sum_probs=18.8
Q ss_pred ccccccccccc-----------ccCcccchhhhhc
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
...|.+|.... ||+.+ |..|+..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf-C~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF-CAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE-ChHHhCC
Confidence 45899998865 99987 9999875
No 85
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.02 E-value=25 Score=29.35 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=17.9
Q ss_pred ccCcccchhhhhcCCCCccccccccceEEe
Q 019651 305 CGHLCCCLICSSRLTNCPLCRRRIDQVVRT 334 (337)
Q Consensus 305 CgH~~~C~~C~~~~~~CP~Cr~~i~~~~~~ 334 (337)
|||..- ...-..||+|..+-..+.++
T Consensus 144 CG~i~~----~~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 144 CGYTAV----DEAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp TCCEEE----SCCCSBCTTTCCBGGGCEEE
T ss_pred CCCeeC----CCCCCCCCCCCCCHHHceec
Confidence 788864 12223899999988776654
No 86
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.52 E-value=28 Score=25.18 Aligned_cols=23 Identities=39% Similarity=0.925 Sum_probs=18.6
Q ss_pred ccccccccccc-----------ccCcccchhhhhc
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
...|.+|.... ||+.+ |..|+..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~-C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF-CNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE-CSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE-ChHHhCC
Confidence 45899998865 99987 9999874
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.65 E-value=45 Score=22.59 Aligned_cols=35 Identities=34% Similarity=0.856 Sum_probs=21.2
Q ss_pred CccccccccccccccCcccchhhhhc---------C---C----CCccccccc
Q 019651 292 VMPDLCVICLEQECGHLCCCLICSSR---------L---T----NCPLCRRRI 328 (337)
Q Consensus 292 ~~~~~C~iC~~~~CgH~~~C~~C~~~---------~---~----~CP~Cr~~i 328 (337)
.+...|.+|.+. |++.+|..|... + + .||.|....
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345689999875 344445554322 1 1 699997654
No 88
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.30 E-value=26 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=17.2
Q ss_pred ccCcccchhhhhcCC-CCccccccccceEE
Q 019651 305 CGHLCCCLICSSRLT-NCPLCRRRIDQVVR 333 (337)
Q Consensus 305 CgH~~~C~~C~~~~~-~CP~Cr~~i~~~~~ 333 (337)
|||..- ....+ .||+|..+-..+..
T Consensus 161 CG~~~~----g~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 161 CGYVHE----GTGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp TCCEEE----EEECCSBCTTTCCBGGGEEE
T ss_pred CCCEee----CCCCCCCCCCCcCCHHHHHh
Confidence 788863 22343 99999998776654
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=23.92 E-value=48 Score=24.25 Aligned_cols=25 Identities=40% Similarity=0.863 Sum_probs=18.8
Q ss_pred Ccccccccccccc-------c----cCcccchhhhhc
Q 019651 292 VMPDLCVICLEQE-------C----GHLCCCLICSSR 317 (337)
Q Consensus 292 ~~~~~C~iC~~~~-------C----gH~~~C~~C~~~ 317 (337)
.....|.+|.++- | .|.+ |..|+..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCee-eccccHH
Confidence 4456999999986 4 4665 9999864
No 90
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.54 E-value=42 Score=20.51 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcchhhhHhh
Q 019651 10 CLSGAALYLLGRSSGRDAELL 30 (337)
Q Consensus 10 ~~~g~~~~~~~~~~~~~~~~l 30 (337)
++.+++||+..|..+++.+..
T Consensus 11 ~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 445666777777444444433
No 91
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.22 E-value=31 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.800 Sum_probs=18.9
Q ss_pred cccccccccccc-----------ccCcccchhhhhc
Q 019651 293 MPDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 293 ~~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
+...|.+|.... ||+.+ |..|+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~-C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF-CGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE-CCcccCC
Confidence 345899998754 99887 9999875
No 92
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=30 Score=25.13 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred cccccccccccc-----------ccCcccchhhhhc
Q 019651 293 MPDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 293 ~~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
+...|.+|.... ||+++ |..|+..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf-C~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSF-CSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEE-CTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEE-ChhhcCC
Confidence 345899998865 99987 9999864
No 93
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=23.05 E-value=37 Score=24.08 Aligned_cols=25 Identities=44% Similarity=0.945 Sum_probs=19.2
Q ss_pred ccccccccccc------------ccCcccchhhhhcCC
Q 019651 294 PDLCVICLEQE------------CGHLCCCLICSSRLT 319 (337)
Q Consensus 294 ~~~C~iC~~~~------------CgH~~~C~~C~~~~~ 319 (337)
.+.|.+|-..+ |.-.. |..|+.+|+
T Consensus 5 g~~C~kCEq~~vn~~DqelHdlnCs~Ni-CPYC~nRls 41 (77)
T 2l7x_A 5 PQTCTICETTPVNAIDAEMHDLNCSYNI-CPYCASRLT 41 (77)
T ss_dssp CCCCTTTCCCCSSHHHHHHHHHHHTTTC-CTTTCCCCC
T ss_pred CceeeeeccccccHHHHHHHHcCCCccc-ChhhhccCC
Confidence 45899998876 87665 888888873
No 94
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.95 E-value=32 Score=24.29 Aligned_cols=22 Identities=41% Similarity=0.865 Sum_probs=17.8
Q ss_pred cccccccccc-----------ccCcccchhhhhc
Q 019651 295 DLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 295 ~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
..|.+|.... ||+.+ |..|+..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~-C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF-CQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE-CGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEE-cccccCC
Confidence 4899998865 99886 9999863
No 95
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=22.90 E-value=29 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=17.7
Q ss_pred ccccccccc---c-------ccCcccchhhhhc
Q 019651 295 DLCVICLEQ---E-------CGHLCCCLICSSR 317 (337)
Q Consensus 295 ~~C~iC~~~---~-------CgH~~~C~~C~~~ 317 (337)
-.|.||.+. + |+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 589999963 2 99996 9999875
No 96
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.67 E-value=94 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=22.5
Q ss_pred Ccccccccccccc------------ccCcccchhhhhcCCCCcc
Q 019651 292 VMPDLCVICLEQE------------CGHLCCCLICSSRLTNCPL 323 (337)
Q Consensus 292 ~~~~~C~iC~~~~------------CgH~~~C~~C~~~~~~CP~ 323 (337)
.....|..|-.-- ||..+ |..|+.+++.||.
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~-h~~C~~~~~~C~~ 397 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPA-HKECLGRVPPCGR 397 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEE-CGGGGGGSCCC--
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCcc-chhhhhhCCCCCC
Confidence 3456899997643 88886 9999999986543
No 97
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.78 E-value=27 Score=21.21 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=6.4
Q ss_pred CCccccccccc
Q 019651 320 NCPLCRRRIDQ 330 (337)
Q Consensus 320 ~CP~Cr~~i~~ 330 (337)
.||+|.....+
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 46777655543
No 98
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.71 E-value=40 Score=20.90 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhc
Q 019651 10 CLSGAALYLLGRS 22 (337)
Q Consensus 10 ~~~g~~~~~~~~~ 22 (337)
+++++++| ++|+
T Consensus 26 li~~l~~~-~~rr 37 (38)
T 2k1k_A 26 LLLGILVF-RSRR 37 (38)
T ss_dssp HHHHHHHH-HHCC
T ss_pred HHHHHHHH-Heec
Confidence 34444433 5543
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.55 E-value=31 Score=25.43 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=18.7
Q ss_pred ccccccccccc-----------ccCcccchhhhhc
Q 019651 294 PDLCVICLEQE-----------CGHLCCCLICSSR 317 (337)
Q Consensus 294 ~~~C~iC~~~~-----------CgH~~~C~~C~~~ 317 (337)
...|.+|.... ||+++ |..|+..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf-C~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF-CNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE-ETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE-ChhHcCC
Confidence 45899998865 99987 8999864
No 100
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.93 E-value=38 Score=22.76 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=11.6
Q ss_pred CCccccccccceEEe
Q 019651 320 NCPLCRRRIDQVVRT 334 (337)
Q Consensus 320 ~CP~Cr~~i~~~~~~ 334 (337)
.||+|......+.++
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEV 52 (54)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCcCCCCcHHHceEc
Confidence 699999887777654
No 101
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=20.92 E-value=45 Score=26.81 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=29.5
Q ss_pred cCCeeEEEeCCCCCcccceeeeeeeEecCCcccccccccccccccccceEEEEeeecCCCeEEEEEEE
Q 019651 118 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 185 (337)
Q Consensus 118 D~tg~V~V~~~~~A~~l~l~~~~~~f~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~G~~ltvvGe~ 185 (337)
|+.++|.|+.|.++..-|-++..-+| -|..+..||..| +|-||||+
T Consensus 67 eg~~RIYiVEPtG~fEdDPNvTdKkF---------------PGNPTrSYRS~~-------PLrIvgEv 112 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDPNVTDKKL---------------PGNPTRSYRTRE-------PVWIVGEL 112 (143)
T ss_dssp SSCCEEEEEEESSCCEECGGGSSSSS---------------SSCTTCEEEESS-------CEEEEEEE
T ss_pred CCCCeEEEEccCCCcccCCCccCCCC---------------CCCCccccccCC-------CcEEEEEe
Confidence 66789999988887433322222222 243466787764 78999996
No 102
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.62 E-value=41 Score=22.31 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.3
Q ss_pred CCccccccccceEE
Q 019651 320 NCPLCRRRIDQVVR 333 (337)
Q Consensus 320 ~CP~Cr~~i~~~~~ 333 (337)
.||+|..+...+.+
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 68888887776654
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.60 E-value=46 Score=29.22 Aligned_cols=37 Identities=27% Similarity=0.644 Sum_probs=24.9
Q ss_pred ccccccccccc--------ccCcccchhhhhcC------CCCccccccccce
Q 019651 294 PDLCVICLEQE--------CGHLCCCLICSSRL------TNCPLCRRRIDQV 331 (337)
Q Consensus 294 ~~~C~iC~~~~--------CgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 331 (337)
...|.+|.+-- |+|.. =..|..+. ..||.|+.+...-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46899999866 45443 23566442 3899999886543
Done!