Query 019652
Match_columns 337
No_of_seqs 188 out of 438
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 3.9E-88 8.4E-93 641.8 25.2 301 26-326 4-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 8.3E-78 1.8E-82 577.6 34.0 314 19-332 10-328 (328)
3 PRK10446 ribosomal protein S6 100.0 1.2E-26 2.6E-31 221.5 25.8 252 44-333 13-295 (300)
4 COG0189 RimK Glutathione synth 100.0 1.7E-26 3.6E-31 222.4 23.3 235 55-328 60-315 (318)
5 TIGR02144 LysX_arch Lysine bio 99.9 1.8E-25 4E-30 210.1 26.2 243 46-328 12-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 1.3E-24 2.7E-29 203.1 24.3 232 45-314 12-262 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 4.1E-24 8.8E-29 191.4 15.4 168 114-317 2-178 (190)
8 PRK01372 ddl D-alanine--D-alan 99.9 3.1E-21 6.7E-26 183.7 25.9 237 45-313 24-275 (304)
9 TIGR01380 glut_syn glutathione 99.9 1.3E-21 2.9E-26 188.1 21.5 247 31-326 2-310 (312)
10 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.6E-20 3.4E-25 179.6 25.3 240 45-313 19-290 (315)
11 PRK12458 glutathione synthetas 99.9 7.7E-21 1.7E-25 184.8 22.1 246 42-331 9-328 (338)
12 PRK05246 glutathione synthetas 99.9 8.8E-21 1.9E-25 182.6 22.1 251 31-329 3-314 (316)
13 TIGR03103 trio_acet_GNAT GNAT- 99.9 1.1E-19 2.4E-24 186.9 25.3 234 47-314 245-528 (547)
14 PRK14571 D-alanyl-alanine synt 99.8 2.8E-19 6.1E-24 170.5 24.1 231 49-317 24-274 (299)
15 PRK14569 D-alanyl-alanine synt 99.8 1.6E-18 3.6E-23 165.4 23.3 233 49-317 27-274 (296)
16 PRK02471 bifunctional glutamat 99.8 5.9E-19 1.3E-23 186.9 21.2 236 43-311 431-729 (752)
17 PRK14016 cyanophycin synthetas 99.8 9.5E-19 2.1E-23 185.3 22.7 232 48-312 164-451 (727)
18 PRK14570 D-alanyl-alanine synt 99.8 1.1E-18 2.4E-23 171.3 20.9 219 74-317 87-325 (364)
19 PRK01966 ddl D-alanyl-alanine 99.8 2.8E-18 6.2E-23 166.3 23.1 213 74-314 81-307 (333)
20 PRK14568 vanB D-alanine--D-lac 99.8 3E-18 6.5E-23 166.8 22.3 211 74-316 90-318 (343)
21 PRK14572 D-alanyl-alanine synt 99.8 1.2E-17 2.7E-22 162.8 22.0 218 74-317 88-324 (347)
22 TIGR02068 cya_phycin_syn cyano 99.8 3E-18 6.6E-23 184.5 18.3 228 45-313 160-451 (864)
23 PF07478 Dala_Dala_lig_C: D-al 99.8 2.9E-18 6.3E-23 155.5 13.2 165 133-318 5-185 (203)
24 TIGR01435 glu_cys_lig_rel glut 99.8 8.5E-17 1.8E-21 168.9 21.6 237 42-311 418-715 (737)
25 TIGR01142 purT phosphoribosylg 99.7 2.1E-15 4.5E-20 148.0 21.8 230 46-315 11-279 (380)
26 TIGR02291 rimK_rel_E_lig alpha 99.7 1.5E-15 3.3E-20 145.9 19.5 193 104-311 26-273 (317)
27 PRK14573 bifunctional D-alanyl 99.7 4.2E-15 9E-20 159.6 24.4 268 27-317 449-765 (809)
28 TIGR01161 purK phosphoribosyla 99.7 6.3E-15 1.4E-19 143.6 22.1 231 45-312 10-269 (352)
29 COG1181 DdlA D-alanine-D-alani 99.7 9.2E-15 2E-19 140.9 22.0 249 46-317 23-295 (317)
30 PRK06019 phosphoribosylaminoim 99.6 1.7E-14 3.6E-19 142.0 21.3 228 46-312 14-271 (372)
31 KOG1057 Arp2/3 complex-interac 99.6 2.7E-15 5.9E-20 153.5 15.7 261 29-325 40-340 (1018)
32 PF13535 ATP-grasp_4: ATP-gras 99.6 1E-14 2.2E-19 127.5 15.5 165 112-309 1-180 (184)
33 PLN02948 phosphoribosylaminoim 99.6 6.9E-14 1.5E-18 144.9 23.8 243 27-312 20-294 (577)
34 TIGR01369 CPSaseII_lrg carbamo 99.6 1.3E-13 2.8E-18 151.7 25.7 230 42-309 573-842 (1050)
35 PRK12767 carbamoyl phosphate s 99.6 1.2E-13 2.6E-18 132.5 21.6 168 100-309 95-271 (326)
36 PRK05294 carB carbamoyl phosph 99.6 1.2E-13 2.5E-18 152.4 24.2 230 42-309 573-842 (1066)
37 PRK07206 hypothetical protein; 99.6 2.9E-13 6.2E-18 134.5 23.0 230 47-315 15-295 (416)
38 PRK09288 purT phosphoribosylgl 99.6 2.6E-13 5.6E-18 133.8 21.6 230 45-314 23-291 (395)
39 PRK06849 hypothetical protein; 99.6 3.4E-13 7.4E-18 133.2 20.9 168 102-309 103-277 (389)
40 PRK08462 biotin carboxylase; V 99.5 4.6E-13 1E-17 134.5 20.5 231 43-311 13-298 (445)
41 PRK12833 acetyl-CoA carboxylas 99.5 1.1E-12 2.5E-17 132.8 21.1 177 100-311 102-299 (467)
42 PRK05586 biotin carboxylase; V 99.5 1.4E-12 3.1E-17 131.2 20.5 178 100-311 99-296 (447)
43 PRK13790 phosphoribosylamine-- 99.5 1.8E-12 3.9E-17 128.0 20.8 216 47-310 17-252 (379)
44 PRK08654 pyruvate carboxylase 99.5 2.4E-12 5.2E-17 131.4 22.0 175 100-311 99-295 (499)
45 PLN02735 carbamoyl-phosphate s 99.5 2.9E-12 6.3E-17 141.3 23.9 232 45-309 596-877 (1102)
46 PRK12815 carB carbamoyl phosph 99.5 6E-12 1.3E-16 138.8 25.4 228 43-309 575-840 (1068)
47 TIGR00514 accC acetyl-CoA carb 99.5 3.1E-12 6.8E-17 128.8 21.1 232 44-311 12-296 (449)
48 PLN02735 carbamoyl-phosphate s 99.5 2.7E-12 5.8E-17 141.6 21.7 234 42-309 42-322 (1102)
49 PRK07178 pyruvate carboxylase 99.5 4.6E-12 1E-16 128.5 21.5 229 46-311 14-295 (472)
50 PRK08463 acetyl-CoA carboxylas 99.5 8.5E-12 1.8E-16 126.8 23.2 229 45-311 13-296 (478)
51 PRK08591 acetyl-CoA carboxylas 99.5 5E-12 1.1E-16 127.1 20.9 177 100-311 99-296 (451)
52 PRK05294 carB carbamoyl phosph 99.5 4.6E-12 1E-16 139.8 21.3 233 44-309 28-305 (1066)
53 PRK02186 argininosuccinate lya 99.5 7.1E-12 1.5E-16 136.0 22.1 225 48-310 18-279 (887)
54 TIGR01235 pyruv_carbox pyruvat 99.4 1E-11 2.3E-16 136.7 21.3 176 100-311 99-296 (1143)
55 TIGR01369 CPSaseII_lrg carbamo 99.4 1.7E-11 3.6E-16 135.2 21.8 233 43-309 26-303 (1050)
56 PLN02257 phosphoribosylamine-- 99.4 1.5E-11 3.2E-16 123.7 19.3 235 47-330 52-316 (434)
57 PRK12815 carB carbamoyl phosph 99.4 2.2E-11 4.8E-16 134.3 22.0 237 42-313 26-306 (1068)
58 PRK06111 acetyl-CoA carboxylas 99.4 3.4E-11 7.5E-16 120.9 21.4 178 100-310 99-295 (450)
59 PRK00885 phosphoribosylamine-- 99.4 2E-11 4.3E-16 121.9 19.2 100 100-213 86-199 (420)
60 PRK06524 biotin carboxylase-li 99.4 3.6E-11 7.9E-16 121.4 18.1 191 91-310 118-325 (493)
61 PRK12999 pyruvate carboxylase; 99.3 6.2E-11 1.3E-15 131.0 19.8 175 100-310 103-299 (1146)
62 PRK13789 phosphoribosylamine-- 99.3 6.9E-11 1.5E-15 118.5 18.1 138 44-214 55-206 (426)
63 PF02655 ATP-grasp_3: ATP-gras 99.3 2.1E-11 4.6E-16 106.4 10.6 149 113-306 1-156 (161)
64 TIGR00877 purD phosphoribosyla 99.3 4.9E-10 1.1E-14 111.8 20.4 179 100-311 88-293 (423)
65 TIGR02712 urea_carbox urea car 99.2 6.4E-10 1.4E-14 123.7 22.1 176 100-311 98-295 (1201)
66 PF15632 ATPgrasp_Ter: ATP-gra 99.2 2.5E-09 5.4E-14 103.6 20.3 185 74-309 66-282 (329)
67 PRK06395 phosphoribosylamine-- 99.2 3.6E-09 7.9E-14 106.5 21.6 217 45-309 53-294 (435)
68 COG0439 AccC Biotin carboxylas 99.1 2.9E-09 6.3E-14 106.9 15.1 176 99-309 98-294 (449)
69 COG0458 CarB Carbamoylphosphat 99.0 6.7E-09 1.5E-13 101.8 16.3 225 52-309 24-291 (400)
70 PF02750 Synapsin_C: Synapsin, 99.0 7.1E-09 1.5E-13 92.4 14.8 185 105-328 1-201 (203)
71 COG0027 PurT Formate-dependent 99.0 2.2E-08 4.8E-13 94.9 18.4 227 48-314 26-291 (394)
72 PF02786 CPSase_L_D2: Carbamoy 99.0 4E-09 8.6E-14 96.4 12.0 161 115-309 1-181 (211)
73 PF14398 ATPgrasp_YheCD: YheC/ 99.0 1.5E-08 3.3E-13 95.4 15.9 189 95-316 3-241 (262)
74 PRK05784 phosphoribosylamine-- 99.0 1.3E-07 2.7E-12 96.6 22.1 138 46-217 58-222 (486)
75 PF02955 GSH-S_ATP: Prokaryoti 98.9 1.4E-08 3E-13 90.0 10.4 137 136-307 11-161 (173)
76 PF02222 ATP-grasp: ATP-grasp 98.8 5.4E-08 1.2E-12 86.2 10.7 151 134-311 5-164 (172)
77 COG1821 Predicted ATP-utilizin 98.7 4.4E-07 9.6E-12 84.0 15.4 147 106-309 105-257 (307)
78 COG0026 PurK Phosphoribosylami 98.7 1.8E-06 3.8E-11 84.1 20.2 222 49-309 16-268 (375)
79 PF14397 ATPgrasp_ST: Sugar-tr 98.7 3.1E-06 6.6E-11 80.8 20.1 193 105-311 16-263 (285)
80 COG2232 Predicted ATP-dependen 98.7 1.7E-06 3.6E-11 82.8 17.6 219 44-307 19-273 (389)
81 PF03133 TTL: Tubulin-tyrosine 98.6 6.4E-07 1.4E-11 85.2 12.6 96 113-212 19-125 (292)
82 PRK13278 purP 5-formaminoimida 98.6 2.7E-06 5.9E-11 83.6 16.3 91 100-212 108-211 (358)
83 KOG0238 3-Methylcrotonyl-CoA c 98.5 3E-06 6.6E-11 84.9 14.4 175 98-309 93-290 (670)
84 COG3919 Predicted ATP-grasp en 98.5 8.8E-07 1.9E-11 83.6 9.6 169 104-309 103-289 (415)
85 PRK13277 5-formaminoimidazole- 98.5 4.8E-06 1.1E-10 81.5 15.0 162 114-306 125-317 (366)
86 KOG3895 Synaptic vesicle prote 98.5 1.9E-06 4.1E-11 82.9 11.8 219 74-329 155-391 (488)
87 PF01071 GARS_A: Phosphoribosy 98.2 1.5E-05 3.2E-10 72.0 10.6 89 115-217 2-106 (194)
88 COG0151 PurD Phosphoribosylami 98.2 0.00011 2.4E-09 72.9 17.1 240 46-331 52-316 (428)
89 COG4770 Acetyl/propionyl-CoA c 98.1 3.7E-05 7.9E-10 78.3 11.8 175 99-309 98-294 (645)
90 COG1038 PycA Pyruvate carboxyl 97.9 0.00014 3E-09 76.6 12.7 172 99-306 104-297 (1149)
91 KOG0369 Pyruvate carboxylase [ 97.7 0.00045 9.7E-09 71.6 13.1 174 99-309 130-326 (1176)
92 KOG2156 Tubulin-tyrosine ligas 97.3 0.00033 7.1E-09 70.8 5.4 72 136-212 282-360 (662)
93 PF14305 ATPgrasp_TupA: TupA-l 97.3 0.026 5.6E-07 52.6 17.6 181 105-314 10-224 (239)
94 TIGR01016 sucCoAbeta succinyl- 97.3 0.00093 2E-08 66.3 8.3 89 117-215 6-116 (386)
95 PRK00696 sucC succinyl-CoA syn 97.1 0.0016 3.5E-08 64.7 7.8 91 115-215 4-116 (388)
96 KOG0370 Multifunctional pyrimi 96.8 0.0096 2.1E-07 64.1 11.0 195 100-330 1017-1230(1435)
97 KOG2157 Predicted tubulin-tyro 96.6 0.026 5.7E-07 57.8 12.1 53 158-213 197-268 (497)
98 PF14403 CP_ATPgrasp_2: Circul 96.5 0.0082 1.8E-07 60.7 8.1 147 46-203 202-385 (445)
99 PF14243 DUF4343: Domain of un 96.5 0.1 2.2E-06 44.2 13.2 109 162-309 3-117 (130)
100 KOG0368 Acetyl-CoA carboxylase 94.9 0.2 4.2E-06 56.7 10.7 187 100-306 162-375 (2196)
101 PF13549 ATP-grasp_5: ATP-gras 93.7 0.083 1.8E-06 48.7 4.3 91 113-214 9-120 (222)
102 KOG0237 Glycinamide ribonucleo 91.9 8.6 0.00019 40.4 16.1 138 47-215 58-210 (788)
103 PRK14046 malate--CoA ligase su 91.3 0.83 1.8E-05 45.7 8.1 88 118-215 7-116 (392)
104 PF07065 D123: D123; InterPro 90.6 1.2 2.6E-05 43.0 8.2 91 193-312 150-243 (299)
105 PF08442 ATP-grasp_2: ATP-gras 88.5 2.1 4.7E-05 38.9 7.8 85 118-212 6-112 (202)
106 PF02951 GSH-S_N: Prokaryotic 78.9 7.3 0.00016 32.5 6.4 80 31-111 2-119 (119)
107 KOG2158 Tubulin-tyrosine ligas 74.8 1.4 3E-05 44.7 1.1 38 283-322 403-442 (565)
108 COG0045 SucC Succinyl-CoA synt 70.6 20 0.00043 35.8 8.0 84 119-212 8-111 (387)
109 COG1759 5-formaminoimidazole-4 68.1 7.5 0.00016 37.9 4.4 54 115-190 124-177 (361)
110 PRK10507 bifunctional glutathi 67.8 82 0.0018 33.6 12.4 154 49-223 399-600 (619)
111 PLN02235 ATP citrate (pro-S)-l 63.9 19 0.00042 36.5 6.5 79 133-212 23-122 (423)
112 PLN00124 succinyl-CoA ligase [ 62.9 25 0.00055 35.6 7.2 43 118-170 34-79 (422)
113 KOG0370 Multifunctional pyrimi 61.4 3 6.5E-05 45.9 0.3 230 43-308 397-671 (1435)
114 PF04174 CP_ATPgrasp_1: A circ 45.2 23 0.0005 34.7 3.6 27 281-309 67-93 (330)
115 PHA02117 glutathionylspermidin 44.6 82 0.0018 31.7 7.4 168 42-224 189-380 (397)
116 PF02310 B12-binding: B12 bind 37.6 96 0.0021 24.6 5.7 31 37-67 8-38 (121)
117 PF02729 OTCace_N: Aspartate/o 35.2 81 0.0018 26.8 5.0 74 27-107 37-123 (142)
118 PF04556 DpnII: DpnII restrict 32.0 68 0.0015 30.9 4.3 35 274-310 179-219 (286)
119 PF08532 Glyco_hydro_42M: Beta 31.7 83 0.0018 28.2 4.8 67 48-118 34-103 (207)
120 TIGR02307 RNA_lig_RNL2 RNA lig 31.4 2.7E+02 0.0059 27.3 8.5 32 192-224 24-56 (325)
121 COG0754 Gsp Glutathionylspermi 30.8 29 0.00062 34.4 1.6 165 29-214 170-354 (387)
122 TIGR00853 pts-lac PTS system, 28.6 60 0.0013 25.6 2.9 62 44-108 18-85 (95)
123 cd06353 PBP1_BmpA_Med_like Per 27.6 1.8E+02 0.004 26.8 6.5 61 32-107 2-66 (258)
124 PF12122 DUF3582: Protein of u 25.8 1.4E+02 0.0029 24.1 4.5 45 48-97 15-60 (101)
125 cd02065 B12-binding_like B12 b 24.6 1.8E+02 0.0038 23.1 5.1 21 47-67 17-37 (125)
126 cd03143 A4_beta-galactosidase_ 23.2 2.4E+02 0.0051 23.6 5.9 56 48-107 30-88 (154)
127 COG0540 PyrB Aspartate carbamo 23.1 3.5E+02 0.0076 26.4 7.4 71 28-105 45-130 (316)
128 PRK11303 DNA-binding transcrip 23.1 2.4E+02 0.0053 26.2 6.5 61 5-66 35-100 (328)
129 cd06267 PBP1_LacI_sugar_bindin 21.8 1.3E+02 0.0028 26.4 4.1 62 32-108 2-65 (264)
130 PRK00856 pyrB aspartate carbam 21.5 2.2E+02 0.0047 27.5 5.8 75 27-108 43-131 (305)
131 cd01123 Rad51_DMC1_radA Rad51_ 20.4 3.9E+02 0.0084 23.8 7.0 70 30-112 54-129 (235)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=3.9e-88 Score=641.79 Aligned_cols=301 Identities=55% Similarity=0.948 Sum_probs=249.0
Q ss_pred CCceEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeC
Q 019652 26 QSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (337)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViD 105 (337)
.+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+|++.|++.+++|.++||+++|||
T Consensus 4 ~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viD 83 (307)
T PF05770_consen 4 QRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVID 83 (307)
T ss_dssp GGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET
T ss_pred cccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh
Q 019652 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (337)
Q Consensus 106 p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (337)
|+++|++++||..|+++|.++......++|++|+++++.++.+++.+.+.+++|+||+||||++||||++||.|+|||++
T Consensus 84 p~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 163 (307)
T PF05770_consen 84 PPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNE 163 (307)
T ss_dssp -HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SG
T ss_pred CHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECH
Confidence 99999999999999999998776666678999999999866677888889999999999999999999999999999999
Q ss_pred hhhhccCCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCC--ccccC
Q 019652 186 YSLKKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVAE 262 (337)
Q Consensus 186 ~~L~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~--~~~~~ 262 (337)
+||+++++|||+||||||| ++|||||||++++++.|+|+||+..++.....+.|+|+++|+.++.+..+.++ +...+
T Consensus 164 ~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~ 243 (307)
T PF05770_consen 164 EGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVE 243 (307)
T ss_dssp GGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTT
T ss_pred HHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCccccc
Confidence 9999999999999999999 99999999999999999999999887765567789999999988776655555 44567
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH
Q 019652 263 LPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 326 (337)
Q Consensus 263 ~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~~~l~~~l~~ 326 (337)
+|+.+.++++|.++|++|||+|||||||++++|+++||||||||||||+|+|+|+++|+++|++
T Consensus 244 ~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 244 MPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp S--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 8888999999999999999999999999999995589999999999999999999999999975
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=8.3e-78 Score=577.64 Aligned_cols=314 Identities=74% Similarity=1.158 Sum_probs=282.4
Q ss_pred CCCcc-cCCCceEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHh
Q 019652 19 SFPQT-QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT 97 (337)
Q Consensus 19 ~~~~~-~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~ 97 (337)
.+|++ +...++++|||||++||+++|.|++|+++|+++||++++||+++||++|||||+||||+++..|++.+++|..+
T Consensus 10 ~~~~~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e 89 (328)
T PLN02941 10 SAPLSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREK 89 (328)
T ss_pred CCcccccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHH
Confidence 33443 46778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 98 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 98 ~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
|||++||||+++|++|+||+.|+++|+++++..+..+|++|+|+++.+....+...+..++++||+|+||+.||||+.+|
T Consensus 90 ~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh 169 (328)
T PLN02941 90 HPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSH 169 (328)
T ss_pred CCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCcccc
Confidence 99999999999999999999999999998877777789999999997543323334567899999999999999999999
Q ss_pred eeEEEeChhhhhccCCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCC-
Q 019652 178 ELSLAYDQYSLKKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD- 255 (337)
Q Consensus 178 ~m~iv~~~~~L~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~- 255 (337)
+|++|+++++|..++.|+++||||||+ +|||||||||++.++.|+|+||+..++..+..|.++|+++++.++.+....
T Consensus 170 ~m~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~ 249 (328)
T PLN02941 170 KMSLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADN 249 (328)
T ss_pred ceEEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999 999999999999899999999988654344567899999998776655554
Q ss_pred --CCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccchHHHHHHHHHHHHccc
Q 019652 256 --LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRY 332 (337)
Q Consensus 256 --~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~~~l~~~l~~~i~~~~ 332 (337)
++|...++|+.+++++||.+++++||++|||||||++.+++++|+||||||||||+|||+|+++|+|+|++.+++++
T Consensus 250 ~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~~ 328 (328)
T PLN02941 250 GGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKKY 328 (328)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcCC
Confidence 45555677888889999999999999999999999998776689999999999999999999999999999999874
No 3
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=221.54 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=179.3
Q ss_pred ccchhHHhhhhhcceEEEEecCCCC---CC-----------CCCCceEEEEccCcH---HHHHHHHHHHHhCCCceeeCh
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK---EWRQILEEYRQTHPEVTVLDP 106 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~---l~-----------~q~~fDvilhK~t~~---~~~~~l~~y~~~~p~v~ViDp 106 (337)
.+-.++.++++++|++++.+|+++. +. +..++|++|.+.... .....+..+... |+.++|+
T Consensus 13 ~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~--g~~v~n~ 90 (300)
T PRK10446 13 YSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML--GSYPLNE 90 (300)
T ss_pred hhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC--CCceecC
Confidence 4456799999999999999998862 11 233799999988753 222223333333 6899999
Q ss_pred HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChh
Q 019652 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (337)
Q Consensus 107 ~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~ 186 (337)
+.++..|+||..+.+.|++. +|++|++.++. +...+.+.+.. ..+||+|+||..++ .|.++.++.+.+
T Consensus 91 ~~a~~~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~~-~~~~P~VvKP~~g~---~g~GV~~v~~~~ 158 (300)
T PRK10446 91 SVAIARARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLIDM-VGGAPLVVKLVEGT---QGIGVVLAETRQ 158 (300)
T ss_pred HHHHHhhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHHH-hCCCCEEEEECCCC---CcccEEEEcCHH
Confidence 99999999999999999964 89999998875 22222222222 23799999998853 577899998887
Q ss_pred hhhc-------cCCCeEEEecccC--CeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCC
Q 019652 187 SLKK-------LEPPLVLQEFVNH--GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 257 (337)
Q Consensus 187 ~L~~-------l~~p~vvQeFI~h--~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~ 257 (337)
++.. .+.++++||||++ |+|+||+|+|++++.+.++..+. ++|.+ +++. ++ ...
T Consensus 159 ~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~-----n~~~---g~------~~~ 221 (300)
T PRK10446 159 AAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE---GDFRS-----NLHR---GG------AAS 221 (300)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC---Cchhh-----eecc---CC------eec
Confidence 6543 4678999999975 49999999999987664442211 11211 1111 11 000
Q ss_pred ccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCcc-----chHHHHHHHHHHHHccc
Q 019652 258 PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-----YEHIFTDFLLSLTQSRY 332 (337)
Q Consensus 258 ~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~-----~~~~l~~~l~~~i~~~~ 332 (337)
+ .++ .+.++++|.++.++||+.++|||++.++ .| +||+|||.+|||++++. +.+.+.+++.+.+..+|
T Consensus 222 ~--~~l--~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 294 (300)
T PRK10446 222 V--ASI--TPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEY 294 (300)
T ss_pred c--CCC--CHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhccccc
Confidence 1 122 2457999999999999999999999875 34 78999999999987764 34777788888777777
Q ss_pred c
Q 019652 333 K 333 (337)
Q Consensus 333 ~ 333 (337)
.
T Consensus 295 ~ 295 (300)
T PRK10446 295 C 295 (300)
T ss_pred C
Confidence 4
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-26 Score=222.35 Aligned_cols=235 Identities=23% Similarity=0.302 Sum_probs=160.1
Q ss_pred hcceEEEEecCCCCCCCCCCceEEEEccCcHHH--HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCC
Q 019652 55 NKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW--RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSY 132 (337)
Q Consensus 55 ~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~--~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~ 132 (337)
..+..+..+.... .....+||++|.|.+.... .+.++.++. -|++||||+++|+.|.||+.+++.|+..
T Consensus 60 ~~~~~~~~~~~~~-~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~--~G~~viN~p~~i~~~~nK~~~~~~l~~~------ 130 (318)
T COG0189 60 VIGLHYELIEEED-LSLLDELDVIIMRKDPPFDFATRFLRLAER--KGVPVINDPQSIRRCRNKLYTTQLLAKA------ 130 (318)
T ss_pred ccccccccccccc-cchhccCCEEEEecCCchhhHHHHHHHHHH--cCCeEECCHHHHHhhhhHHHHHHHHHhc------
Confidence 3444444444433 2334499999999987532 233334444 4999999999999999999999999964
Q ss_pred CCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChh-hhhcc--------CCCeEEEecccC
Q 019652 133 GKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL--------EPPLVLQEFVNH 203 (337)
Q Consensus 133 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~-~L~~l--------~~p~vvQeFI~h 203 (337)
++|+|+|+++.+. .+... .....++||+|+||+.+ | ++.++.++.+.+ .|.++ ..++++||||+.
T Consensus 131 -~ipvP~T~i~~~~-~~~~~-~~~~~~g~pvVlKp~~G--s-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~ 204 (318)
T COG0189 131 -GIPVPPTLITRDP-DEAAE-FVAEHLGFPVVLKPLDG--S-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPK 204 (318)
T ss_pred -CCCCCCEEEEcCH-HHHHH-HHHHhcCCCEEEeeCCC--C-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCc
Confidence 8999999999743 22322 33456899999999884 4 778999999998 66553 236999999998
Q ss_pred C-eeEEEEEECCEEEEEEE---ecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 019652 204 G-VLFKVYIVGEAIKVVRR---FSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 279 (337)
Q Consensus 204 ~-~d~KV~VIG~~v~~~~R---~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~ 279 (337)
. .+.|.+||||.+.+..+ +-. + .++|++ |++..+ ..++ .+++ +.+++||.+++++
T Consensus 205 ~~~~~rrivv~~~~~~~~y~~~R~~-~--~~~~R~-----N~a~Gg---------~~e~--~~l~--~e~~elA~kaa~~ 263 (318)
T COG0189 205 AKRDDRRVLVGGGEVVAIYALARIP-A--SGDFRS-----NLARGG---------RAEP--CELT--EEEEELAVKAAPA 263 (318)
T ss_pred ccCCcEEEEEeCCEEeEEeeecccc-C--CCCcee-----eccccc---------cccc--cCCC--HHHHHHHHHHHHH
Confidence 8 67777777766665433 311 0 112222 223222 1111 1233 5569999999999
Q ss_pred hCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCC-Cc---cc--hHHHHHHHHHHH
Q 019652 280 LGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK-MP---EY--EHIFTDFLLSLT 328 (337)
Q Consensus 280 LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~g-v~---~~--~~~l~~~l~~~i 328 (337)
||+.++||||+.++ +++||+|||.+|++.+ +. ++ ...+.+++...+
T Consensus 264 lGl~~~GVDiie~~---~g~~V~EVN~sP~~~~~i~~~~g~~~~~~~~~~ie~~~ 315 (318)
T COG0189 264 LGLGLVGVDIIEDK---DGLYVTEVNVSPTGKGEIERVTGVNIAGLIIDAIEKFV 315 (318)
T ss_pred hCCeEEEEEEEecC---CCcEEEEEeCCCccccchhhhcCCchHHHHHHHHHHHH
Confidence 99999999999874 3589999999998775 33 32 244444444443
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.95 E-value=1.8e-25 Score=210.09 Aligned_cols=243 Identities=17% Similarity=0.243 Sum_probs=172.7
Q ss_pred chhHHhhhhhcceEEEEecCCCCCC-------CCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLS-------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~-------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~ 118 (337)
.+.+.++++++|+++..+|+++... +-.++|++|.|-........+.... +.-|++++||+++++.+.||..
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l-e~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLL-EALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHH-HHCCCcEECcHHHHHHHhhHHH
Confidence 4668999999999999987775211 2247899999843221111222222 2247999999999999999999
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------
Q 019652 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------- 191 (337)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------- 191 (337)
++++|+++ +|++|++..+. +.....+. ...++||+|+||..++ +++++.++.+.+++.++
T Consensus 91 ~~~~l~~~-------gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~g~---~g~gv~~v~~~~~l~~~~~~~~~~ 157 (280)
T TIGR02144 91 TYLKLAKA-------GVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVIGS---WGRLVALIRDKDELESLLEHKEVL 157 (280)
T ss_pred HHHHHHHC-------CcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECcCC---CcCCEEEECCHHHHHHHHHHHHhh
Confidence 99999864 89999998875 22222222 2347899999998854 46789999999876541
Q ss_pred ----CCCeEEEecccCC-eeEEEEEECCEEEEE-EEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCC
Q 019652 192 ----EPPLVLQEFVNHG-VLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP 265 (337)
Q Consensus 192 ----~~p~vvQeFI~h~-~d~KV~VIG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~ 265 (337)
+.++++||||++. ++++++|+|+++... .|.+ .++..+ .+.++ ...+. ++
T Consensus 158 ~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~-------------~~~g~-~~~~~-------~~-- 213 (280)
T TIGR02144 158 GGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTN-------------TARGG-KAEPC-------PL-- 213 (280)
T ss_pred cCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhh-------------hhcCC-ceecc-------CC--
Confidence 3579999999864 999999999997754 4443 222211 01000 00011 11
Q ss_pred hHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc-----cchHHHHHHHHHHH
Q 019652 266 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP-----EYEHIFTDFLLSLT 328 (337)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~-----~~~~~l~~~l~~~i 328 (337)
.+.++++|.++.+++|+.++|||++.+++ | .++|+|||..|||.++. |+...+.+++.+++
T Consensus 214 ~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 214 DEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 24579999999999999999999998753 3 58999999999998864 55577888777765
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.94 E-value=1.3e-24 Score=203.06 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=167.2
Q ss_pred cchhHHhhhhhcceEEEEecCCCC---CCC----CCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRP---LSD----QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~---l~~----q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~ 117 (337)
+.+++.++++++|+++..+|+++. +.. ...+|+|+.|.........+.+..+. -+++++|+++++..+.||+
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 777899999999999999998753 221 34699999998332211233333333 3789999999999999999
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc------
Q 019652 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (337)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------ 191 (337)
.+++.|++. +|++|++..+. +.+++...+ ..++||+|+||..++ ++.++.++.+.+++..+
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHHH
Confidence 999999964 79999998885 222233322 347899999998864 46789999999877532
Q ss_pred -C---CCeEEEecccCC--eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCC
Q 019652 192 -E---PPLVLQEFVNHG--VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP 265 (337)
Q Consensus 192 -~---~p~vvQeFI~h~--~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~ 265 (337)
. .++++||||++. ++++|+|+|++++.+.++..++ ++.+ +.+.++. .... .+
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~----~~~~--------n~~~g~~-~~~~-------~l-- 215 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSG----HWRT--------NLARGGK-AEPC-------PL-- 215 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCC----chhh--------hhhcCCe-eeec-------CC--
Confidence 2 489999999854 7999999999988665443211 1111 1111110 0011 11
Q ss_pred hHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc
Q 019652 266 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
.+.++++|.+++++||+.++|||++++. +| +++|+|||..||+.++.
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSV 262 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhH
Confidence 2457999999999999999999999986 34 69999999999998764
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.92 E-value=4.1e-24 Score=191.43 Aligned_cols=168 Identities=27% Similarity=0.471 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc---
Q 019652 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK--- 190 (337)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~--- 190 (337)
.||..++++|++. +|++|+|.++.+ .+++.+.+.+.+ +||+|+||..++ .+.++.++.+.+++..
T Consensus 2 ~dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGS---SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCC---CCCEEEEecCHHHHHHHHH
Confidence 5999999999975 899999999963 334455555544 899999998743 5779999999977665
Q ss_pred ----cCCCeEEEecccCC--eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCC
Q 019652 191 ----LEPPLVLQEFVNHG--VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 264 (337)
Q Consensus 191 ----l~~p~vvQeFI~h~--~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p 264 (337)
.+.++++|+||++. +|+||+|||++++.+++++.++ ++|+++ .+ .+ ...++ .++|
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n-----~~---~g------~~~~~--~~l~ 130 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN-----LS---RG------GKVEP--YDLP 130 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh-----hc---cC------ceEEE--ecCC
Confidence 36899999999876 6999999999999877766432 123322 11 11 11111 1222
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccch
Q 019652 265 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 265 ~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
+.+.++|.+++++||++++|||++..+ + +|||+|||.+|||++++...
T Consensus 131 --~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~~~~~~~ 178 (190)
T PF08443_consen 131 --EEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFRGIEEAT 178 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---TTHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHhHHHHHH
Confidence 457999999999999999999977654 2 69999999999999986644
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.89 E-value=3.1e-21 Score=183.74 Aligned_cols=237 Identities=18% Similarity=0.227 Sum_probs=167.3
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCC---CCCceEEEEccCcHHH-HHHHHHHHHhCCCceeeCh-HHHHHHhccHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSM 119 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~ 119 (337)
+-..+.++.++.|++++.|+.+..+.+ ...+|+||....+... ...++.+.+.. +++++.+ +.++..+.||..+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~ 102 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRT 102 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHH
Confidence 446688899999999999998865554 4578999998643211 12345555554 8999976 7999999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cC
Q 019652 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LE 192 (337)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~ 192 (337)
.++|.++ +|++|++..+.+. ++.... ...++||+|+||..++ +|.++.++.+.+++.+ ..
T Consensus 103 k~~l~~~-------gIp~p~~~~~~~~-~~~~~~--~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~ 169 (304)
T PRK01372 103 KLVWQAA-------GLPTPPWIVLTRE-EDLLAA--IDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYD 169 (304)
T ss_pred HHHHHHC-------CCCCCCEEEEeCc-chHHHH--HhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 9999864 8999999998632 222222 2358999999999865 3568899999988754 26
Q ss_pred CCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccC--CCCCCCccccCCCChHHHH
Q 019652 193 PPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLE 270 (337)
Q Consensus 193 ~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~--~~~~~~~~~~~~p~~~~~~ 270 (337)
.++++||||+ |+++.|.|+|+++....+...+ .+.+++......+... .+..+++. ..+.++
T Consensus 170 ~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~~~~~-----~~~~l~ 233 (304)
T PRK01372 170 DEVLVEKYIK-GRELTVAVLGGKALPVIEIVPA----------GEFYDYEAKYLAGGTQYICPAGLPAE-----IEAELQ 233 (304)
T ss_pred CcEEEEcccC-CEEEEEEEECCCccceEEEEec----------CCEEeeeccccCCCeEEEeCCCCCHH-----HHHHHH
Confidence 7899999998 8999999999977644332211 1122322211111000 01111111 134578
Q ss_pred HHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 271 RLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 271 ~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
++|.++.++||+. +++||+++++. | ++||+|||..||+.+-
T Consensus 234 ~~a~~~~~~lg~~g~~~iD~~~~~~-g-~~~viEvN~~p~~~~~ 275 (304)
T PRK01372 234 ELALKAYRALGCRGWGRVDFMLDED-G-KPYLLEVNTQPGMTSH 275 (304)
T ss_pred HHHHHHHHHhCCcceEEEEEEEcCC-C-CEEEEEecCCCCCCcc
Confidence 9999999999995 66799999863 5 6999999999999753
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.89 E-value=1.3e-21 Score=188.09 Aligned_cols=247 Identities=14% Similarity=0.165 Sum_probs=163.6
Q ss_pred EEEEEecc---cccccccchhHHhhhhhcceEEEEecCCCCCCC------------------------------CCCceE
Q 019652 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (337)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------------q~~fDv 77 (337)
.||+.|-| -|-++.+..+|..+|+++|+++..+++++.... -..||+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 46777764 456667888899999999999999988852210 137899
Q ss_pred EEEccCcH------HHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 78 VLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 78 ilhK~t~~------~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
+|.|-... ...+.++.... -|+.|+||+++++.+.||.++++++. ++|+|++.. +...+.
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le~--~g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~ 147 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELADP--TGTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIR 147 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHHh--CCCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHH
Confidence 99996432 11233333333 38999999999999999999777531 589998765 333344
Q ss_pred HHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh-hhh-------hcc-CCCeEEEecccC--CeeEEEEEECCEEEE-E
Q 019652 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSL-------KKL-EPPLVLQEFVNH--GVLFKVYIVGEAIKV-V 219 (337)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L-------~~l-~~p~vvQeFI~h--~~d~KV~VIG~~v~~-~ 219 (337)
+.+... + |+|+||+.++ ++.++..+... ..+ ..+ ..|+++|+||+. +.|+||+|+|++++. +
T Consensus 148 ~~~~~~--g-~vVvKPl~G~---~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~a 221 (312)
T TIGR01380 148 AFLAEH--G-DIVLKPLDGM---GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAA 221 (312)
T ss_pred HHHHHc--C-CEEEEECCCC---CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEE
Confidence 434443 3 9999999864 56678777642 222 222 469999999985 389999999999875 5
Q ss_pred EEe-cCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEEEEEEEEeCCC
Q 019652 220 RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGT 295 (337)
Q Consensus 220 ~R~-Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~LGL~l~GvDvi~~~~t 295 (337)
.++ +.++ +|.++ .+ .++ ... ..+++ +...++|.+++ +.+|+.++|||+|
T Consensus 222 i~R~~~~g----d~r~N-----~~---~Gg------~~~--~~~l~--~e~~~ia~~~~~~~~~~gl~~agVDii----- 274 (312)
T TIGR01380 222 VARIPAGG----EFRGN-----LA---VGG------RGE--ATELS--ERDREICADVAPELKRRGLLFVGIDVI----- 274 (312)
T ss_pred EEecCCCC----Ccccc-----cc---CCc------eee--ccCCC--HHHHHHHHHHHHHHHhcCCcEEEEEEe-----
Confidence 554 3321 22221 11 111 111 11222 34588998887 6779999999999
Q ss_pred CCeEEEEEecCC--CCCCCCccch-----HHHHHHHHH
Q 019652 296 RDQFYVIDINYF--PGYGKMPEYE-----HIFTDFLLS 326 (337)
Q Consensus 296 g~~~~VIDVN~f--Pg~~gv~~~~-----~~l~~~l~~ 326 (337)
| ++|+|||.. +||.|++... ..+.++|.+
T Consensus 275 g--~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 275 G--GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred C--CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHh
Confidence 2 369999975 4998776543 444444443
No 10
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.88 E-value=1.6e-20 Score=179.57 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=160.7
Q ss_pred cchhHHhhhhhcceEEEEecCCCC-------CC--------CCCCceEEEEccCcHHHH-HHHHHHHHhCCCceeeCh-H
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRP-------LS--------DQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-P 107 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~-------l~--------~q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp-~ 107 (337)
+-..+.++.+++|++++.|+.+.. +. ....+|+|+.-+...... ..++...+. -|++++.+ +
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gip~~g~~~ 97 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLEL-MGIPYTGSGV 97 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHH-cCCCccCCCH
Confidence 334478888999999999999862 11 115799999865432110 233443333 37999986 8
Q ss_pred HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHH---HHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 108 ~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~---l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
.++..|.||..+.+.|.++ +|++|++..+..+..+..+. .....++||+|+||..++| |.++.++.+
T Consensus 98 ~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~---s~Gv~~v~~ 167 (315)
T TIGR01205 98 LASALSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGS---SVGVSKVKS 167 (315)
T ss_pred HHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC---ccCEEEECC
Confidence 9999999999999999964 89999999886222111111 1124689999999988653 568999999
Q ss_pred hhhhhc-------cCCCeEEEecccCCeeEEEEEEC-CEEEEE-EEecCCCCccccccCCCceeeecCcccccc--cCCC
Q 019652 185 QYSLKK-------LEPPLVLQEFVNHGVLFKVYIVG-EAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--SADD 253 (337)
Q Consensus 185 ~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG-~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~--~~~~ 253 (337)
.++|.+ ...++++||||+ |+++.|.|+| ++.... .+.... ..++++......+. ...+
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p 236 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYVIP 236 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEEeC
Confidence 988764 367899999997 8999999999 543221 111100 00122221110000 0011
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 254 ADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
..+++. ..+.++++|.++.++||+ ++++||++++.+ | +++|+|||..||+...
T Consensus 237 ~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~viEvN~~pg~~~~ 290 (315)
T TIGR01205 237 APLDEE-----LEEKIKELALKAYKALGCRGLARVDFFLDEE-G-EIYLNEINTIPGMTAI 290 (315)
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHhCCCceEEEEEEEeCC-C-CEEEEEeeCCCCCCCc
Confidence 112111 134679999999999999 688999999853 4 6899999999999864
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.87 E-value=7.7e-21 Score=184.77 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=164.7
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCCC--------------------------------------CCCceEEEEccC
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSD--------------------------------------QGPFDIVLHKLT 83 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~--------------------------------------q~~fDvilhK~t 83 (337)
.+.+..+|..+|.++|+++..+++.+.... ...||+|++|-.
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 667788899999999999987777653211 126899999964
Q ss_pred cH---HHHHHHHHH------HHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHH
Q 019652 84 GK---EWRQILEEY------RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 154 (337)
Q Consensus 84 ~~---~~~~~l~~y------~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l 154 (337)
.. ...+.+.++ ..+..+++++|++++++.+.||+.++++ . .+++|+|++.. +.+.+.+.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l-~---------~~~vP~T~v~~-~~~~~~~~~ 157 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSF-P---------EEVRPTTHISR-NKEYIREFL 157 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhh-c---------cCCCCCEEEeC-CHHHHHHHH
Confidence 32 233333322 1233589999999999999999987553 2 15699998775 332333333
Q ss_pred HHcCCCC-cEEEeeccCCCCCcceeeEEEeChhh--hhc------cCCCeEEEecccCC--eeEEEEEECCEEE------
Q 019652 155 LKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS--LKK------LEPPLVLQEFVNHG--VLFKVYIVGEAIK------ 217 (337)
Q Consensus 155 ~~~~l~f-P~VvKp~~a~Gs~~sh~m~iv~~~~~--L~~------l~~p~vvQeFI~h~--~d~KV~VIG~~v~------ 217 (337)
.+ .++ |+|+||+.+. ++.++.++.+.+. +.. ...++++|+||+.. .|+||+|+|++++
T Consensus 158 ~~--~~~~pvVvKPl~G~---gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~ 232 (338)
T PRK12458 158 EE--SPGDKMILKPLQGS---GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHY 232 (338)
T ss_pred HH--cCCCeEEEEECCCC---CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccce
Confidence 33 444 5999998864 5678888875542 322 15689999999853 8999999999999
Q ss_pred EEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---CCcEEEEEEEEeCC
Q 019652 218 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GLRLFNLDIIREHG 294 (337)
Q Consensus 218 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L---GL~l~GvDvi~~~~ 294 (337)
++.++.... ++|.++ .+. ++ ... ..+++ +..+++|.++..+| ||.+.|||++ +
T Consensus 233 ~a~~R~~~~---~d~RsN-----~~~---Gg------~~~--~~~l~--~~~~~ia~~~~~~l~~~GL~~~gVDli---~ 288 (338)
T PRK12458 233 AAMRRVPAG---GDVRSN-----VHA---GG------SVV--KHTLT--KEELELCEAIRPKLVRDGLFFVGLDIV---G 288 (338)
T ss_pred eEEEEecCC---CCeeec-----ccC---CC------ccc--CcCCC--HHHHHHHHHHHHHHhhcCCeEEeEEEE---C
Confidence 776654321 122211 111 11 111 11233 45699999999888 9999999999 2
Q ss_pred CCCeEEEEEecC-CC-CCCCC-----ccchHHHHHHHHHHHHcc
Q 019652 295 TRDQFYVIDINY-FP-GYGKM-----PEYEHIFTDFLLSLTQSR 331 (337)
Q Consensus 295 tg~~~~VIDVN~-fP-g~~gv-----~~~~~~l~~~l~~~i~~~ 331 (337)
+ +|+|||. +| |+.++ -|+...+.++|++.+..+
T Consensus 289 -~---~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~~ 328 (338)
T PRK12458 289 -D---KLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQRK 328 (338)
T ss_pred -C---EEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhHH
Confidence 2 5899998 79 66553 345577888888777543
No 12
>PRK05246 glutathione synthetase; Provisional
Probab=99.87 E-value=8.8e-21 Score=182.63 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=167.3
Q ss_pred EEEEEecc---cccccccchhHHhhhhhcceEEEEecCCCCCCC------------------------------CCCceE
Q 019652 31 VVGYALTS---KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (337)
Q Consensus 31 ~VGy~l~~---kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------------q~~fDv 77 (337)
.||+.|-| .|-.+.+..+|.++|+++|+++..+++++.... -..||+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 57777764 456678888899999999999998888752211 024899
Q ss_pred EEEccCcH-----H-HHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 78 VLHKLTGK-----E-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 78 ilhK~t~~-----~-~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
|+.|.... . ....++.+.+. +++++|++++++.+.||+.+++++. ++|+|.+.. +.+.+.
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~~--g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~ 148 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAERP--GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIR 148 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHhC--CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHH
Confidence 99985432 1 11233333333 8999999999999999999877532 589998765 333343
Q ss_pred HHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC-hhh-------hhcc-CCCeEEEecccC--CeeEEEEEECCEEEE-E
Q 019652 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD-QYS-------LKKL-EPPLVLQEFVNH--GVLFKVYIVGEAIKV-V 219 (337)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~-------L~~l-~~p~vvQeFI~h--~~d~KV~VIG~~v~~-~ 219 (337)
+.+...+ |+|+||+.++ ++.++..+.. ... +... ..|+++|+||+. +.|+||+|+|+++++ +
T Consensus 149 ~~~~~~~---~vVlKP~~G~---~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a 222 (316)
T PRK05246 149 AFRAEHG---DIILKPLDGM---GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYA 222 (316)
T ss_pred HHHHHCC---CEEEEECCCC---CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhe
Confidence 4344433 9999999864 5667777744 222 2223 569999999976 389999999999887 6
Q ss_pred EEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HHhCCcEEEEEEEEeCCCC
Q 019652 220 RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTR 296 (337)
Q Consensus 220 ~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~LGL~l~GvDvi~~~~tg 296 (337)
.+|..+. ++|.++ ++.++. ... .+++ +...++|.+++ +.+|+.++|||++ |
T Consensus 223 ~~R~~~~---~~~rtN--------~~~Gg~-~~~-------~~l~--~~~~~ia~~~~~~l~~~gl~~~GVDli-----~ 276 (316)
T PRK05246 223 LARIPAG---GETRGN--------LAAGGR-GEA-------TPLT--ERDREICAAIGPELKERGLIFVGIDVI-----G 276 (316)
T ss_pred eEecCCC---CCcccC--------ccCCce-Eec-------cCCC--HHHHHHHHHHHHHHHHhCCCEEEEEEe-----C
Confidence 5443221 122221 221111 111 1222 34588888888 5779999999999 2
Q ss_pred CeEEEEEecCC-C-CCCCCccch-----HHHHHHHHHHHH
Q 019652 297 DQFYVIDINYF-P-GYGKMPEYE-----HIFTDFLLSLTQ 329 (337)
Q Consensus 297 ~~~~VIDVN~f-P-g~~gv~~~~-----~~l~~~l~~~i~ 329 (337)
. +|+|||.+ | ||.+++..+ ..+.+++.+.+.
T Consensus 277 -~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 277 -D-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred -C-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 2 59999975 6 888887654 556666665544
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.86 E-value=1.1e-19 Score=186.90 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=153.6
Q ss_pred hhHHhhhhhcceEEEEecCCCCCCCC-CCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHh
Q 019652 47 PKLEGLARNKGILFVAIDQNRPLSDQ-GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD 125 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~l~~q-~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~ 125 (337)
+.++++|+++|++++.+|.+..+-.. ..-+.++.+ + ....++++.++..|.||..+.++|++
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk~lL~~ 307 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTRRLVSE 307 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHHHHHHH
Confidence 67999999999999998855322110 011222211 1 23367799999999999999999996
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE-EeChhhhhc-------cCCCeEE
Q 019652 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLVL 197 (337)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~-------l~~p~vv 197 (337)
+ +|++|++..+. +.++..+.... ++ |+|+||..+ + ++.||.+ +.++++|.+ ....+++
T Consensus 308 a-------GIpVP~~~~~~-~~~~~~~~~~~--~G-~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlv 373 (547)
T TIGR03103 308 A-------GLQVPEQQLAG-NGEAVEAFLAE--HG-AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQFCDRVLL 373 (547)
T ss_pred c-------CcCCCCEEEEC-CHHHHHHHHHH--hC-CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhcCCcEEE
Confidence 5 89999999886 22233333333 45 799999775 3 5778887 889988764 3568999
Q ss_pred EecccCCeeEEEEEECCEEEEEEEecCCCCccccccC---------------CCce-----------------eeecCcc
Q 019652 198 QEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST---------------SAGV-----------------FRFPRVS 245 (337)
Q Consensus 198 QeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~---------------~~g~-----------------~~~~~~s 245 (337)
|+||+ |.|+|++|||++++++.++-.+.+-.++..+ ..+. ++++++.
T Consensus 374 Ee~i~-G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~ 452 (547)
T TIGR03103 374 ERYVP-GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVL 452 (547)
T ss_pred EEecc-CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccC
Confidence 99997 8999999999999988665444321110000 0000 1111111
Q ss_pred cccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc
Q 019652 246 CAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 246 ~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
..+. .+.+.+......++ .+...++|.++++++||.+.|||++.++.++..++|||||..||+.+-+
T Consensus 453 ~~G~~v~l~~~~Nl~tGg~~~dvtd~~--~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~ 528 (547)
T TIGR03103 453 PEGQRLRVRRTANLHTGGTIHDVTEQL--HPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGLANHE 528 (547)
T ss_pred CCCCEEEEecCCcccCCCeeEeccccc--CHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCccccccC
Confidence 0000 00011110000122 2456999999999999999999999976444468999999999999765
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.85 E-value=2.8e-19 Score=170.48 Aligned_cols=231 Identities=16% Similarity=0.230 Sum_probs=158.5
Q ss_pred HHhhhhhcceEEEEecCCCCCC----CCCCceEEEEccCcHHH-HHHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHH
Q 019652 49 LEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQC 122 (337)
Q Consensus 49 l~~~a~~~Gi~~v~iD~~~~l~----~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~ 122 (337)
+.++.++.|++++.+|.+..+. +...+|++|....+... -..++.+.+. -|++++.+ +.++..|+||..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHH
Confidence 5667788999999999775332 24579999999865321 1345666654 47899865 8999999999999888
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------CCCe
Q 019652 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPL 195 (337)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~ 195 (337)
|+. +|++|++..+.... ....++||+|+||..++| |.++.++.+.++|.+. ..++
T Consensus 103 l~~--------~ip~p~~~~~~~~~-------~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEFM-------KTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEechh-------hhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 872 58999998885211 123589999999988553 5788899999887542 4579
Q ss_pred EEEecccCCeeEEEEEECCE----EEEEEEecCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHH
Q 019652 196 VLQEFVNHGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLL 269 (337)
Q Consensus 196 vvQeFI~h~~d~KV~VIG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~ 269 (337)
++||||+ |+++.|.|+|+. +....... + ..++|++......+.. ..+..++++. .+.+
T Consensus 165 lVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~k~~~g~~~~~~p~~l~~~~-----~~~i 228 (299)
T PRK14571 165 IVQEYIP-GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVAKYTKGETEFILPAPLNPEE-----ERLV 228 (299)
T ss_pred EEEcccc-ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCccccccccCCCCeeEEeCCCCCHHH-----HHHH
Confidence 9999998 899999999752 22211111 0 1122333221111100 0111121111 3457
Q ss_pred HHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccch
Q 019652 270 ERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 270 ~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
+++|.++.++||+ ++++||+++++ | ++||+|||..||+.....++
T Consensus 229 ~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 229 KETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred HHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHHH
Confidence 8999999999997 68889999864 3 59999999999998765544
No 15
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.82 E-value=1.6e-18 Score=165.38 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=156.2
Q ss_pred HHhhhhhcceEEEEecCCC-CCCC---CCCceEEEEccCcHHH-HHHHHHHHHhCCCceeeC-hHHHHHHhccHHHHHHH
Q 019652 49 LEGLARNKGILFVAIDQNR-PLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (337)
Q Consensus 49 l~~~a~~~Gi~~v~iD~~~-~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~ViD-p~~ai~~~~dR~~~~~~ 122 (337)
..++-++.|++++.+|.+. .+.. ..++|+++.=+.+... ...++...+.+ |++++- ++.++..|+||..+-++
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 4556677899999999863 2111 3478988886654322 13455555543 677764 66999999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc------CCCeE
Q 019652 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLV 196 (337)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------~~p~v 196 (337)
|+++ +|++|++..+.... . ....++||+|+||..++ + |.++.++.++++|... ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSSGG-S--SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCCCC-C--CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 9864 89999998875211 1 12458999999998743 3 6789999999988642 35899
Q ss_pred EEecccCCeeEEEEEECCEEEE-EEEecCCCCccccccCCCceeeecCccccccc-CCCCCCCccccCCCChHHHHHHHH
Q 019652 197 LQEFVNHGVLFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS-ADDADLDPCVAELPPRPLLERLAK 274 (337)
Q Consensus 197 vQeFI~h~~d~KV~VIG~~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~-~~~~~~~~~~~~~p~~~~~~~lA~ 274 (337)
+||||. |++|.|.|+|+.+.. +..... ..++++.......+. ..+..+.+. ..+.++++|.
T Consensus 170 vEefI~-G~E~tv~vl~~~~~~~~~i~~~-----------~~~~~~~~k~~~~~~~~~P~~l~~~-----~~~~i~~~a~ 232 (296)
T PRK14569 170 IEQWVT-GKEITVAIVNDEVYSSVWIEPQ-----------NEFYDYESKYSGKSIYHSPSGLCEQ-----KELEVRQLAK 232 (296)
T ss_pred EEcccc-cEEEEEEEECCcCcceEEEecC-----------CCcCChhhccCCCcEEEeCCCCCHH-----HHHHHHHHHH
Confidence 999997 899999999986532 222111 012222211111000 011111111 1346899999
Q ss_pred HHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCCccch
Q 019652 275 ELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 275 ~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
++.++||+. +++||++.+. +| ++||+|||..||+..-..++
T Consensus 233 ~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~~ 274 (296)
T PRK14569 233 KAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLSP 274 (296)
T ss_pred HHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHHH
Confidence 999999975 6679999975 34 69999999999998644443
No 16
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.82 E-value=5.9e-19 Score=186.89 Aligned_cols=236 Identities=14% Similarity=0.175 Sum_probs=154.0
Q ss_pred cccchhHHhhhhhcceEEEEecCCCCCCCCC---CceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHH
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQNRPLSDQG---PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~ 119 (337)
.++.+.++++|+++||.+..+|.+..+-..+ ..+.++. -.....|+..+...+.||..+
T Consensus 431 ~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 431 ELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred ChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHH
Confidence 3567789999999999999999976543321 2222221 024567888899999999999
Q ss_pred HHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEe---Chhhhhc------
Q 019652 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK------ 190 (337)
Q Consensus 120 ~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~---~~~~L~~------ 190 (337)
.++|++. +|++|++.++.+ ..++..... .-.+||+|+||..++ .|.|+.++. +.+++.+
T Consensus 493 k~lL~~~-------GIpvP~~~~~~~-~e~a~~~~~-~~~g~PvVVKP~~g~---~G~GV~~~~~~~~~eel~~A~~~a~ 560 (752)
T PRK02471 493 KKILAEA-------GFPVPAGDEFTS-LEEALADYS-LFADKAIVVKPKSTN---FGLGISIFKEPASLEDYEKALEIAF 560 (752)
T ss_pred HHHHHHC-------CcCCCCEEEEcC-HHHHHHHHH-HhcCCCEEEEECCCC---CcCCeEEecCcCCHHHHHHHHHHHH
Confidence 9999964 899999998852 222222222 124899999998854 456777754 4555543
Q ss_pred -cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccC--------CC----c--e-----------------
Q 019652 191 -LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA----G--V----------------- 238 (337)
Q Consensus 191 -l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~--------~~----g--~----------------- 238 (337)
.+..+++||||+ |.+|||+|||++++.+.++..+++.-++.++ +. | .
T Consensus 561 ~~~~~vlVEEfI~-G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L 639 (752)
T PRK02471 561 REDSSVLVEEFIV-GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLML 639 (752)
T ss_pred hcCCcEEEEeccc-CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHH
Confidence 256899999997 8999999999999988766555554322111 10 0 0
Q ss_pred ----eeecCccccccc---------CCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCC----CC--eE
Q 019652 239 ----FRFPRVSCAAAS---------ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT----RD--QF 299 (337)
Q Consensus 239 ----~~~~~~s~~~~~---------~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~t----g~--~~ 299 (337)
++++++...+.. +.+++.......+ .+...++|.++++++||.++|||++.++-+ +. .+
T Consensus 640 ~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~i--h~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~ 717 (752)
T PRK02471 640 KQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDM--DDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNY 717 (752)
T ss_pred HHcCCCccccCCCCCEEEecCCCccCCCCeeEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCe
Confidence 111111111100 0000000000122 245699999999999999999999987521 11 47
Q ss_pred EEEEecCCCCCC
Q 019652 300 YVIDINYFPGYG 311 (337)
Q Consensus 300 ~VIDVN~fPg~~ 311 (337)
.|||||..||+.
T Consensus 718 ~IiEvN~~P~l~ 729 (752)
T PRK02471 718 GIIELNFNPAMY 729 (752)
T ss_pred EEEEecCCCchh
Confidence 899999999975
No 17
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.82 E-value=9.5e-19 Score=185.31 Aligned_cols=232 Identities=16% Similarity=0.273 Sum_probs=150.1
Q ss_pred hHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhcc
Q 019652 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~ 127 (337)
.++++|.++|+.+..++-.. + ..++.-...+. .... . .--++..++..+.||..+.++|++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~~-~----------v~lgyG~~~~~---i~~~--~-~~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDGS-L----------VQLGYGKYQRR---IQAA--E-TDQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCCC-e----------EecCCcHHHHH---HHHh--c-CCCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 58889999999998877543 1 22221111111 1121 1 2277888999999999999999964
Q ss_pred ccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE-EeChhhhhc-------cCCCeEEEe
Q 019652 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLVLQE 199 (337)
Q Consensus 128 l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~-------l~~p~vvQe 199 (337)
+||+|++..+. +.+++.+.. ..++||+|+||..++ .+.+|.+ +.++++|.+ ...++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 89999998775 222333322 358999999998743 5678987 899988754 257899999
Q ss_pred cccCCeeEEEEEECCEEEEEEEecCCCCccccccC------------CCce-----------------------eeecCc
Q 019652 200 FVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST------------SAGV-----------------------FRFPRV 244 (337)
Q Consensus 200 FI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~------------~~g~-----------------------~~~~~~ 244 (337)
||+ |.+|||+|+|++++++.|+..+.+..++..+ ..|. ++.+++
T Consensus 294 ~I~-G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV 372 (727)
T PRK14016 294 YIP-GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSV 372 (727)
T ss_pred ecC-CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCcccc
Confidence 998 8999999999999998887655431110000 0000 011111
Q ss_pred ccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCC----CCCeEEEEEecCCCCCC
Q 019652 245 SCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG----TRDQFYVIDINYFPGYG 311 (337)
Q Consensus 245 s~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~----tg~~~~VIDVN~fPg~~ 311 (337)
...+. .+.+........+.+ +...++|.++++++||+++|||++.++- .+....|||||..||+.
T Consensus 373 ~~~G~~v~l~~~~N~s~Gg~~~d~td~i~--~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~ 450 (727)
T PRK14016 373 PPKGEKVYLRRNANLSTGGTAIDVTDEVH--PENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLR 450 (727)
T ss_pred CCCCCEEEEeccccccCCCeeEecccccC--HHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchh
Confidence 10000 000110000111233 3469999999999999999999998641 01136899999999998
Q ss_pred C
Q 019652 312 K 312 (337)
Q Consensus 312 g 312 (337)
.
T Consensus 451 ~ 451 (727)
T PRK14016 451 M 451 (727)
T ss_pred h
Confidence 5
No 18
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.82 E-value=1.1e-18 Score=171.31 Aligned_cols=219 Identities=16% Similarity=0.261 Sum_probs=148.2
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceeeChH-HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC--CC
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SS 149 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp~-~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~--~~ 149 (337)
++|++|.-+.+..+. ..++.+.+. -|++.+.+. .+...++||..+.++|+++ +|++|++..+.... .+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccccc
Confidence 689999988764221 255555554 479999888 5999999999999999964 89999988875321 01
Q ss_pred hhHHH--HHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEE
Q 019652 150 IPDVV--LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVR 220 (337)
Q Consensus 150 ~~~~l--~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~ 220 (337)
..+.. ....++||+|+||..++ | |.|+.++.+.++|.. .+.++++||||. |+++.|.|+|+....+
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~G-s--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~-GrEi~v~Vlg~~~~~v- 233 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVLG-S--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE-AREIECSVIGNEQIKI- 233 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCC-C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC-CEEEEEEEECCCCceE-
Confidence 11111 12458999999997743 3 568999999988765 357899999998 9999999999843111
Q ss_pred EecCCCCccccccC-CCceeeecCcccc--ccc---CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeC
Q 019652 221 RFSLPDVTKQDLST-SAGVFRFPRVSCA--AAS---ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREH 293 (337)
Q Consensus 221 R~Slp~~~~~~~~~-~~g~~~~~~~s~~--~~~---~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~ 293 (337)
+|.. ++.. ...+|+|...... +.. ..++.++++. .+.++++|.++.++||+. ++.+|++++.
T Consensus 234 ---~~~~---Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~-----~~~i~~~A~~~~~aLg~~G~~RvDf~l~~ 302 (364)
T PRK14570 234 ---FTPG---EIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH-----LLDIKEYAFLTYKNLELRGMARIDFLIEK 302 (364)
T ss_pred ---eeeE---EEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEEC
Confidence 1110 1111 1134555432210 100 1122222221 357899999999999995 5569999985
Q ss_pred CCCCeEEEEEecCCCCCCCCccch
Q 019652 294 GTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 294 ~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
.+| ++||+|||..||+.....++
T Consensus 303 ~~g-~~yvlEiNt~PG~t~~S~~p 325 (364)
T PRK14570 303 DTG-LIYLNEINTIPGFTDISMFA 325 (364)
T ss_pred CCC-cEEEEEeeCCCCCCcccHHH
Confidence 334 69999999999998764444
No 19
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.82 E-value=2.8e-18 Score=166.30 Aligned_cols=213 Identities=16% Similarity=0.220 Sum_probs=144.8
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC--
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-- 149 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-- 149 (337)
.+|++++=+.+.... ..++.+.+. -|++.+-+ +.+...++||..+.++|.+. +|++|++..+.+....
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 689999877543111 245556554 47887754 78999999999999999964 8999999988643221
Q ss_pred hhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEe
Q 019652 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRF 222 (337)
Q Consensus 150 ~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~ 222 (337)
.... ....++||+|+||..++| |.|+.++.+.++|.+ .+.++++|+||+ |+++.|.|+|+.-.
T Consensus 153 ~~~~-~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~-G~E~~v~vl~~~~~----- 222 (333)
T PRK01966 153 SLAE-IEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK-GREIECAVLGNDPK----- 222 (333)
T ss_pred hHHH-HHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC-CEEEEEEEECCCCe-----
Confidence 1111 123589999999988543 568999999988764 367899999998 89999999996211
Q ss_pred cCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeE
Q 019652 223 SLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQF 299 (337)
Q Consensus 223 Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~ 299 (337)
.+|.. .+....++|+|......+.. ..+..++++. .+.++++|.++.++||+ +++.+|++++. +| ++
T Consensus 223 ~~~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~~ 292 (333)
T PRK01966 223 ASVPG---EIVKPDDFYDYEAKYLDGSAELIIPADLSEEL-----TEKIRELAIKAFKALGCSGLARVDFFLTE-DG-EI 292 (333)
T ss_pred EcccE---EEecCCceEcHHHccCCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-CE
Confidence 01110 11111235555443321110 0122222211 35689999999999998 56679999975 34 68
Q ss_pred EEEEecCCCCCCCCc
Q 019652 300 YVIDINYFPGYGKMP 314 (337)
Q Consensus 300 ~VIDVN~fPg~~gv~ 314 (337)
||+|||..||++...
T Consensus 293 ~vlEiNt~Pg~t~~s 307 (333)
T PRK01966 293 YLNEINTMPGFTPIS 307 (333)
T ss_pred EEEEeeCCCCCCccc
Confidence 999999999998643
No 20
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.81 E-value=3e-18 Score=166.77 Aligned_cols=211 Identities=19% Similarity=0.255 Sum_probs=144.1
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
.+|++|.-+.+.... -.++.+.+. -|++.+ .++.+...|+||..+.++|+++ +|++|++..+.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 579999888753221 255556554 467776 5678999999999999999865 89999999886332 11
Q ss_pred HHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEE--EEEEEe
Q 019652 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAI--KVVRRF 222 (337)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v--~~~~R~ 222 (337)
....++||+|+||..++ | |.|+.++.+.++|.. .+..+++||||. |+++.|.|+|+.- .+...
T Consensus 160 ---~~~~l~~P~iVKP~~~g-s--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~sv~vl~~~~~~~~~~~- 231 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSG-S--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV-GSEVGCAVLGNGADLVVGEV- 231 (343)
T ss_pred ---hhhhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC-CEEEEEEEEcCCCCcceecc-
Confidence 12358999999998853 3 679999999998864 367899999998 8999999998731 11100
Q ss_pred cCCCCccccccCCCceeeecCcccc--cc----cCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCC
Q 019652 223 SLPDVTKQDLSTSAGVFRFPRVSCA--AA----SADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGT 295 (337)
Q Consensus 223 Slp~~~~~~~~~~~g~~~~~~~s~~--~~----~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~t 295 (337)
..+...+++|+++..... +. ...++.+++. ..+.++++|.++.++||+ .++.+|++++. +
T Consensus 232 -------~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 232 -------DQIRLSHGFFRIHQENEPEKGSENSTIIVPADISAE-----ERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred -------eEEecCCCccchhhhhccccCCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 001112244555432210 00 0011112111 135689999999999999 67789999985 3
Q ss_pred CCeEEEEEecCCCCCCCCccc
Q 019652 296 RDQFYVIDINYFPGYGKMPEY 316 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~gv~~~ 316 (337)
| .+||+|||..||+....-+
T Consensus 299 g-~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 299 G-TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred C-CEEEEEeeCCCCCCccCHH
Confidence 5 6899999999998865433
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.79 E-value=1.2e-17 Score=162.77 Aligned_cols=218 Identities=16% Similarity=0.160 Sum_probs=140.6
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC--C
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~--~ 149 (337)
.+|+++.=+.+.... ..++.+.+. -|++++ .++.++..|+||..+.+.|+++ +|++|++..+.+... .
T Consensus 88 ~~d~~f~~~hg~~gEdg~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~~~ 159 (347)
T PRK14572 88 DADIAFLGLHGGAGEDGRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYLNS 159 (347)
T ss_pred CcCEEEEecCCCCCCCcHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccccC
Confidence 467755544332110 145555543 378887 4588999999999999999864 899999998853221 1
Q ss_pred hhHHH-HHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECC----EEE
Q 019652 150 IPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGE----AIK 217 (337)
Q Consensus 150 ~~~~l-~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~----~v~ 217 (337)
..+.+ ....++||+|+||..++ + |.++.++.++++|.. .+.++++||||. |+++.|.|+|+ ++.
T Consensus 160 ~~~~~~~~~~l~~PvvVKP~~gg-s--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~-G~E~sv~vi~~~~~g~~~ 235 (347)
T PRK14572 160 PRKTLLKLESLGFPQFLKPVEGG-S--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS-GTEVSCGVLERYRGGKRN 235 (347)
T ss_pred hHHHHHHHHhcCCCEEEecCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc-cEEEEEEEEeCccCCCCC
Confidence 11111 12358999999998843 3 578999999988765 257899999997 89999999973 221
Q ss_pred EEEEecCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCC
Q 019652 218 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 294 (337)
Q Consensus 218 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~ 294 (337)
.. .+|-. ++....++|+|......+.. ..+..+++.. .+.++++|.++.++||+. +.++|+++++
T Consensus 236 ~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~- 303 (347)
T PRK14572 236 PI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISDQE-----MKRVQELAIRAHESLGCKGYSRTDFIIVD- 303 (347)
T ss_pred ce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhCCcceeEEEEEEEC-
Confidence 00 01100 01111234554433321110 0122222111 346899999999999987 5579999964
Q ss_pred CCCeEEEEEecCCCCCCCCccch
Q 019652 295 TRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 295 tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
| .+||+|||..||+....-++
T Consensus 304 -~-~~~vlEiNt~PG~t~~S~~p 324 (347)
T PRK14572 304 -G-EPHILETNTLPGMTETSLIP 324 (347)
T ss_pred -C-cEEEEeeeCCCCCCcccHHH
Confidence 3 58999999999998764444
No 22
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.79 E-value=3e-18 Score=184.54 Aligned_cols=228 Identities=17% Similarity=0.282 Sum_probs=150.3
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCCC--CCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSDQ--GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQC 122 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~q--~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~ 122 (337)
+.+.++++|.++||.+..+|-.. +-.. |..--++. . ..-=.|+..++..+.||..+.++
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~-~~qlg~g~~~~~~~------------~------~~t~~~s~ia~~ia~DK~~tk~l 220 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGS-LVQLGYGSRQKRIQ------------A------TETDRTSAIAVEIACDKDLTKEI 220 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCC-EEEecCCCEEEEEE------------e------ecCCCCcHHHHHHHcCHHHHHHH
Confidence 44568889999999999987533 3221 11111110 0 01224667899999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE-EeChhhhhcc-------CCC
Q 019652 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPP 194 (337)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p 194 (337)
|++. +|++|++..+.+ .+++.+.. ..++||+|+||..++ .+.++.+ +.++++|.+. ..+
T Consensus 221 L~~~-------GIpvP~~~~~~s-~~ea~~~~--~~ig~PvVVKP~~g~---~G~GV~l~v~s~~el~~a~~~a~~~~~~ 287 (864)
T TIGR02068 221 LSDA-------GVPVPEGTVVQS-AEDAWEAA--QDLGYPVVIKPYDGN---HGRGVTINILTRDEIESAYEAAVEESSG 287 (864)
T ss_pred HHHc-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCC---CccCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 9964 899999988862 22333322 347899999998753 4678888 8899887642 568
Q ss_pred eEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccC--------C----Cc-----e------------------e
Q 019652 195 LVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S----AG-----V------------------F 239 (337)
Q Consensus 195 ~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~--------~----~g-----~------------------~ 239 (337)
+++|+||+ |.+|||+|+|++++++.++-.|++.-++..+ + .| . +
T Consensus 288 vlVEefI~-G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~ 366 (864)
T TIGR02068 288 VIVERFIT-GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGL 366 (864)
T ss_pred EEEEEecc-CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCC
Confidence 99999997 8999999999999988777555532211100 0 00 0 0
Q ss_pred ee---------------cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCC----CCeEE
Q 019652 240 RF---------------PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT----RDQFY 300 (337)
Q Consensus 240 ~~---------------~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~t----g~~~~ 300 (337)
++ .|.|.++...+ ...+.. +...++|.++++++||+++|||++.++-+ +....
T Consensus 367 ~~~sV~~~g~~v~l~~~~Nls~Gg~~~d------~td~i~--~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~ 438 (864)
T TIGR02068 367 TLDSVPAKGRIVYLRATANLSTGGVAID------RTDEIH--PENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGA 438 (864)
T ss_pred CccccCCCCCEEEEeccccccCCCceEe------cccccC--HHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcE
Confidence 11 11122111100 011233 34699999999999999999999986411 11358
Q ss_pred EEEecCCCCCCCC
Q 019652 301 VIDINYFPGYGKM 313 (337)
Q Consensus 301 VIDVN~fPg~~gv 313 (337)
|||||+.||+...
T Consensus 439 iiEvN~~p~~~~h 451 (864)
T TIGR02068 439 IVEVNAAPGLRMH 451 (864)
T ss_pred EEEEcCCcchhhc
Confidence 9999999998743
No 23
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.77 E-value=2.9e-18 Score=155.51 Aligned_cols=165 Identities=19% Similarity=0.346 Sum_probs=109.1
Q ss_pred CCccCCcEEEEecCCCChhH-HHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCC
Q 019652 133 GKVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHG 204 (337)
Q Consensus 133 ~~I~~P~~~~~~~~~~~~~~-~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~ 204 (337)
.||++|+++++......... .-....++||+|+||.. .|| |.|+.+|.+.++|.. ++.++++||||+ |
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~-~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~-G 80 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPAS-EGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS-G 80 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESS-TST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S-S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECC-CCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec-c
Confidence 48999999999743311110 01234689999999987 455 678899999988765 377999999995 8
Q ss_pred eeEEEEEECC---EEEEEEEecCCCCccccccCCCceeeecCcccc--c--ccCCCCCCCccccCCCChHHHHHHHHHHH
Q 019652 205 VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--A--ASADDADLDPCVAELPPRPLLERLAKELR 277 (337)
Q Consensus 205 ~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~l~ 277 (337)
+++.|.|+|+ ++.-..... ...++|+|+..... + ....++.+++.. .+.++++|.++.
T Consensus 81 ~E~tv~vl~~~~~~~~~~~ei~----------~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~-----~~~i~~~a~~a~ 145 (203)
T PF07478_consen 81 REFTVGVLGNGEPRVLPPVEIV----------FPSEFYDYEAKYQPADSETEYIIPADLSEEL-----QEKIKEIAKKAF 145 (203)
T ss_dssp EEEEEEEEESSSTEEEEEEEEE----------ESSSEEEHHHHHSGCCSCEEEESS-SS-HHH-----HHHHHHHHHHHH
T ss_pred cceEEEEEecCCcccCceEEEE----------cCCCceehhheeccCCCceEEEecCCCCHHH-----HHHHHHHHHHHH
Confidence 9999999994 333222221 12356777665532 1 011222222221 457899999999
Q ss_pred HHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCCCCccchH
Q 019652 278 RQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYGKMPEYEH 318 (337)
Q Consensus 278 ~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~~ 318 (337)
++||+.-++ ||+.+++ +| ++|++|||..||+.....++.
T Consensus 146 ~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p~ 185 (203)
T PF07478_consen 146 KALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFPR 185 (203)
T ss_dssp HHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHHH
T ss_pred HHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHHH
Confidence 999997777 9999986 35 799999999999987666553
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.75 E-value=8.5e-17 Score=168.90 Aligned_cols=237 Identities=14% Similarity=0.187 Sum_probs=152.4
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHH
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (337)
-.++.+.|+..|.++| .+..+|.+..+- +++.- .+ .+|.++ ..+-=.|+..+...|.||..+-+
T Consensus 418 ~~~stQ~Li~~Ai~rG-~v~vlD~~~~~~----------~L~~g---~~-~~~v~~-~s~ts~tS~ia~~i~~DK~~TK~ 481 (737)
T TIGR01435 418 MELSTQWKLFDVIQKG-KVEILDEAEQFL----------RLQKG---DH-IEYVKN-ANMTSKDNYVSPLIMENKVVTKK 481 (737)
T ss_pred ccHhHHHHHHHHHHCC-CEEEeCCCCCee----------EeecC---Cc-ceEEec-ceecCCccHHHHHHhcCHHHHHH
Confidence 3567788999999999 999999877543 33211 00 012211 12344678889999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCC-CCcEEEeeccCCCCCcceeeEEEeC---hhhhhc-------
Q 019652 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLKK------- 190 (337)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a~Gs~~sh~m~iv~~---~~~L~~------- 190 (337)
+|++. +|+||.+.++.+. ........ .+ +||+|+||..++ .|.|+.++.+ .+++.+
T Consensus 482 iL~~a-------GIPVP~g~~~~~~-~~a~~~~~--~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~ 548 (737)
T TIGR01435 482 VLAEA-------GFRVPFGDEFSSQ-ALALEAFS--LFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFS 548 (737)
T ss_pred HHHHc-------CcCCCCEEEECCH-HHHHHHHH--HhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHh
Confidence 99964 8999999988632 12222122 23 799999998854 3568888766 455543
Q ss_pred cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccC--------C------Cce------------------
Q 019652 191 LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AGV------------------ 238 (337)
Q Consensus 191 l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~--------~------~g~------------------ 238 (337)
.+..+++|+||. |.+|||+|||+++.++.++..+++.-++.++ + .+.
T Consensus 549 ~~~~VLVEefI~-G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~ 627 (737)
T TIGR01435 549 EDSSVIIEEFLP-GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKE 627 (737)
T ss_pred cCCeEEEEeccc-CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHH
Confidence 256799999998 9999999999999988776656554221110 0 000
Q ss_pred --eeecCccccccc---------CCCCCCCccc-cCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCC------CeEE
Q 019652 239 --FRFPRVSCAAAS---------ADDADLDPCV-AELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTR------DQFY 300 (337)
Q Consensus 239 --~~~~~~s~~~~~---------~~~~~~~~~~-~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg------~~~~ 300 (337)
++++++...+.. +.+.+. -++ .++. +..+++|.++++++|+.++|||+|.++-+. ..+.
T Consensus 628 qg~tldsVp~~Ge~V~Lr~~aNlstGG~~-iDvTd~ih--p~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~ 704 (737)
T TIGR01435 628 QGLTIDSIPKKEQIVYLRENSNVSTGGDS-IDMTDEMD--DSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWG 704 (737)
T ss_pred cCCCccccCCCCCEEEEcCCCcccCCCce-EecccccC--HHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceE
Confidence 011111110000 000000 011 1222 346999999999999999999999865221 1378
Q ss_pred EEEecCCCCCC
Q 019652 301 VIDINYFPGYG 311 (337)
Q Consensus 301 VIDVN~fPg~~ 311 (337)
|||||..||+.
T Consensus 705 iiEvN~~P~l~ 715 (737)
T TIGR01435 705 VIEANFNPAMH 715 (737)
T ss_pred EEEEcCCcchh
Confidence 99999999965
No 25
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.70 E-value=2.1e-15 Score=147.97 Aligned_cols=230 Identities=14% Similarity=0.206 Sum_probs=147.8
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCC-----------------------CCCceEEEEccCcHHHHHHHHHHHHhCCCce
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ 102 (337)
...++.+|+++|+.++.+|.+..-.. ...+|+|+.=..+ .....+..+.+. |++
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l~~~--g~~ 87 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFELEKE--GYF 87 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHHHhc--CCe
Confidence 34577788899999998888642111 0135555542221 111233334333 677
Q ss_pred eeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE
Q 019652 103 VLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (337)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (337)
+..++++++.++||..+.+.+ .++ +|++|+|..+.+ .+++.... ..++||+|+||..+. +|.++.+
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~---~s~gv~~ 154 (380)
T TIGR01142 88 VVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSS---SGKGQSV 154 (380)
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCc---CCCCeEE
Confidence 788999999999999988875 543 899999998863 22232222 358999999998643 5678999
Q ss_pred EeChhhhhcc-----------CCCeEEEecccCCeeEEEEEE---CCEEEEEEEecCCCCccccccCCCceeeecCcccc
Q 019652 182 AYDQYSLKKL-----------EPPLVLQEFVNHGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 247 (337)
Q Consensus 182 v~~~~~L~~l-----------~~p~vvQeFI~h~~d~KV~VI---G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~ 247 (337)
+.++++|... +.++++||||+.+.++.|.++ ++.+... ....+.. ..+.+..+
T Consensus 155 v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~~----- 221 (380)
T TIGR01142 155 VRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHES----- 221 (380)
T ss_pred ECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEEE-----
Confidence 9999887542 358999999985588988877 3332221 1111100 01111100
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCCcc
Q 019652 248 AASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 315 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~ 315 (337)
..+..+++.. .+.++++|.++.++||. .++++|++.+++ ++||+|||.-||-.+...
T Consensus 222 ---~~p~~l~~~~-----~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 222 ---WQPQEMSEKA-----LEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred ---ECCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEE
Confidence 0112222111 34578999999999998 677899999742 589999999999765543
No 26
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.69 E-value=1.5e-15 Score=145.86 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=120.5
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCC-cEEEeeccCCCCCcceeeEEE
Q 019652 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLA 182 (337)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs~~sh~m~iv 182 (337)
.|+-+..-.|-||+.+.++|++. +|++|.|..+.+...... .+.+.--++ |+|+||+.++ .+.|+.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~a-------glpvP~T~~~~s~~~~~~-~l~~~~~~~~~VVVKPl~Gs---~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAA-------GITVPELYGVIHNQAEVK-TIHNIVKDHPDFVIKPAQGS---GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHHc-------CCCCCCEEEecCchhhHH-HHHHHHccCCCEEEEECCCC---CccCeEEE
Confidence 57778888999999999999864 899999988864332222 222221256 6999998853 56788888
Q ss_pred eChhh--------------------------hhccCCC--eEEEecc--cC---------C-eeEEEEEECCEEEEEEEe
Q 019652 183 YDQYS--------------------------LKKLEPP--LVLQEFV--NH---------G-VLFKVYIVGEAIKVVRRF 222 (337)
Q Consensus 183 ~~~~~--------------------------L~~l~~p--~vvQeFI--~h---------~-~d~KV~VIG~~v~~~~R~ 222 (337)
.+.++ |-.+..+ .++|||+ +| + .|+||+|+|+++.+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 65422 1122222 5666775 33 2 699999999999877555
Q ss_pred -cCC--CCccccccCCCce---eeecCcc--cccccCCCCCCCccc------cCCCChHHHHHHHHHHHHHhCCcEEEEE
Q 019652 223 -SLP--DVTKQDLSTSAGV---FRFPRVS--CAAASADDADLDPCV------AELPPRPLLERLAKELRRQLGLRLFNLD 288 (337)
Q Consensus 223 -Slp--~~~~~~~~~~~g~---~~~~~~s--~~~~~~~~~~~~~~~------~~~p~~~~~~~lA~~l~~~LGL~l~GvD 288 (337)
+.. ++.+|- . ..|. .+..+.. ...........+|.. .+.|..+.+.++|.++++++|+.++|+|
T Consensus 175 ~~~~~~~~~tN~-~-~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvD 252 (317)
T TIGR02291 175 LPTRASDGKANL-H-QGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVD 252 (317)
T ss_pred ccCccCCccccc-c-cCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 321 233221 0 0111 1111100 000000011112211 2345556789999999999999999999
Q ss_pred EEEeCCCCCeEEEEEecCCCCCC
Q 019652 289 IIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 289 vi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
++++.+ + +++|+|||..|||+
T Consensus 253 ii~~~~-~-g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 253 MVLDKE-E-GPLVLELNARPGLA 273 (317)
T ss_pred EEEeCC-C-CEEEEEeCCCCCCC
Confidence 999753 3 58999999999998
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.69 E-value=4.2e-15 Score=159.65 Aligned_cols=268 Identities=13% Similarity=0.083 Sum_probs=172.8
Q ss_pred CceEEEEEEe-cccccccccchh---HHhhhhhcceEEEEecCCCCC----C----------------------CCCCce
Q 019652 27 SKLVVVGYAL-TSKKTKSFLQPK---LEGLARNKGILFVAIDQNRPL----S----------------------DQGPFD 76 (337)
Q Consensus 27 ~~~~~VGy~l-~~kK~~~~~~~~---l~~~a~~~Gi~~v~iD~~~~l----~----------------------~q~~fD 76 (337)
++..+|+..+ -.+-++..+..+ ..++-.+.|+++++||.++.= . ....+|
T Consensus 449 ~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 528 (809)
T PRK14573 449 PKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVD 528 (809)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCC
Confidence 3344555533 334455555444 344446679999999877620 0 013478
Q ss_pred EEEEccCcHHHH-HHHHHHHHhCCCceeeC-hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC--CChhH
Q 019652 77 IVLHKLTGKEWR-QILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SSIPD 152 (337)
Q Consensus 77 vilhK~t~~~~~-~~l~~y~~~~p~v~ViD-p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~--~~~~~ 152 (337)
+++.=+.+..+. ..++.+.+. -|++.+- ++.+...++||..+-++|++. +|++|++..+.... .+...
T Consensus 529 ~vf~~lhG~~gedg~iq~~le~-~gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~ 600 (809)
T PRK14573 529 VVLPILHGPFGEDGTMQGFLEI-IGKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPEL 600 (809)
T ss_pred EEEEcCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHH
Confidence 888887654221 256666654 3566654 778899999999999999864 89999999885321 11111
Q ss_pred HH--HHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEec
Q 019652 153 VV--LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFS 223 (337)
Q Consensus 153 ~l--~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~S 223 (337)
.+ ....++||+|+||..++ | |.|+.+|.++++|.+ .+.++++||||..++++-|.|+|+.--... .+
T Consensus 601 ~~~~~~~~lg~P~iVKP~~~G-s--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~grEi~v~vl~~~~~~~~-~~ 676 (809)
T PRK14573 601 CLAHIVEAFSFPMFVKTAHLG-S--SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLGSREIEVSCLGDGSSAYV-IA 676 (809)
T ss_pred HHHHHHHhcCCCEEEeeCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCCCEEEEEEEEeCCCCceE-ec
Confidence 11 12468999999998854 4 569999999988765 367899999998669999999998521000 01
Q ss_pred CCCCccccccCCCceeeecCccc-ccc----cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCC
Q 019652 224 LPDVTKQDLSTSAGVFRFPRVSC-AAA----SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRD 297 (337)
Q Consensus 224 lp~~~~~~~~~~~g~~~~~~~s~-~~~----~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~ 297 (337)
+.. ......++|+|..... .+. ...+..++++. .+.++++|.++.++||+.-++ ||++++.+ |
T Consensus 677 -~~~---e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g- 745 (809)
T PRK14573 677 -GPH---ERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKES-----QEQVLELAERIYRLLQGKGSCRIDFFLDEE-G- 745 (809)
T ss_pred -cce---EEccCCCeeCchhcccCCCCCceEEecCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-
Confidence 111 1111234666654431 110 00122222221 357899999999999998775 99999753 4
Q ss_pred eEEEEEecCCCCCCCCccch
Q 019652 298 QFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 298 ~~~VIDVN~fPg~~gv~~~~ 317 (337)
.+||+|||..||+....-++
T Consensus 746 ~~yv~EiNt~PG~t~~s~~p 765 (809)
T PRK14573 746 NFWLSEMNPIPGMTEASPFL 765 (809)
T ss_pred CEEEEEeeCCCCCCcccHHH
Confidence 68999999999998643333
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.68 E-value=6.3e-15 Score=143.65 Aligned_cols=231 Identities=18% Similarity=0.258 Sum_probs=148.9
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCCCCCce-EEEEccCcHHH-------------------HHHHHHHHHhCCCceee
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW-------------------RQILEEYRQTHPEVTVL 104 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fD-vilhK~t~~~~-------------------~~~l~~y~~~~p~v~Vi 104 (337)
....|..+|+++|++++.+|.+..-....-.| .++...+|... ...+..+.+. |+++.
T Consensus 10 l~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~ 87 (352)
T TIGR01161 10 LGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLF 87 (352)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeEC
Confidence 34468889999999999999864211111111 12223333211 1233444343 57788
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
.++++++.++||..+-+.|.++ +|++|++..+.+ ..++.+.. ..++||+|+||..+ |+ ++.|+.++.+
T Consensus 88 p~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~-g~-~g~Gv~~v~~ 155 (352)
T TIGR01161 88 PSPDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAAL--QELGFPVVLKARTG-GY-DGRGQYRIRN 155 (352)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHHH--HHcCCCEEEEeCCC-CC-CCCCEEEECC
Confidence 9999999999999999999865 899999998863 22232222 35799999999874 22 5779999999
Q ss_pred hhhhhcc-----CCCeEEEecccCCeeEEEEEEC---CEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCC
Q 019652 185 QYSLKKL-----EPPLVLQEFVNHGVLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 256 (337)
Q Consensus 185 ~~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG---~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~ 256 (337)
.++|.+. +.++++||||+.+.++.|.++. +.+.+. |-.. . . ...|....+- .+..+
T Consensus 156 ~~el~~a~~~~~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~-----~~~~-~-~-~~~g~~~~~~--------~p~~~ 219 (352)
T TIGR01161 156 EADLPQAAKELGDRECIVEEFVPFERELSVIVARSADGETAFY-----PVVE-N-I-HQDGILRYVV--------APAAV 219 (352)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEE-----CCcc-c-E-EeCCEEEEEE--------CCCCC
Confidence 9888653 3489999999966888888763 233322 1100 0 0 0112222110 11222
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 257 DPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 257 ~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
++.. .+.++++|.++.++||+ .++++|++++.+ | +++|+|||.=||=.|
T Consensus 220 ~~~~-----~~~~~~~a~~i~~~l~~~G~~~ve~~~~~d-g-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 220 PDAI-----QARAEEIARRLMEELGYVGVLAVEMFVLPD-G-RLLINELAPRVHNSG 269 (352)
T ss_pred CHHH-----HHHHHHHHHHHHHHcCceeEEEEEEEEeCC-C-cEEEEEecCCCCCcC
Confidence 1111 35678999999999998 477899998753 4 589999999998443
No 29
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=9.2e-15 Score=140.88 Aligned_cols=249 Identities=17% Similarity=0.189 Sum_probs=173.4
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCC---C-------CCceEEEEccCcHHHH-HHHHHHHHhCCCceeeChHHHHHHhc
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSD---Q-------GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPPYAIQHLH 114 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~---q-------~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp~~ai~~~~ 114 (337)
-..+.++-+..|.++..+|.+....- . ..+|++++.+.+.... ..+|.|.+..-==+|.-|..+-..++
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~m 102 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAM 102 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcc
Confidence 34456666668899999998763221 2 5889999888764221 24555665432237889999999999
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc---
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK--- 190 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~--- 190 (337)
||..+-.++... +++++.++.++.+. .+..-.-...+++||++|||.. -|| |-++..+...+++..
T Consensus 103 dk~~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~-~gS--Svg~~~v~~~~d~~~~~e 172 (317)
T COG1181 103 DKIVTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR-EGS--SVGRSPVNVEGDLQSALE 172 (317)
T ss_pred cHHHHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCC-ccc--eeeEEEeeeccchHHHHH
Confidence 999988777754 89999998886442 2222112346899999999987 455 678888888877664
Q ss_pred ----cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCC-CceeeecCccccccc---CCCCCCCccccC
Q 019652 191 ----LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCAAAS---ADDADLDPCVAE 262 (337)
Q Consensus 191 ----l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~-~g~~~~~~~s~~~~~---~~~~~~~~~~~~ 262 (337)
.+..+++++|++ ++.+.|.|+|+.. .. ..++ .+++... ..+|+|...+..+.. ..++.+++..
T Consensus 173 ~a~~~d~~vl~e~~~~-~rei~v~vl~~~~-~~--~~l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~-- 243 (317)
T COG1181 173 LAFKYDRDVLREQGIT-GREIEVGVLGNDY-EE--QALP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEI-- 243 (317)
T ss_pred HHHHhCCceeeccCCC-cceEEEEecCCcc-cc--eecC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCHHH--
Confidence 388999999999 9999999999965 11 1111 1122222 457777765543111 1122222221
Q ss_pred CCChHHHHHHHHHHHHHhC-CcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccch
Q 019652 263 LPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 263 ~p~~~~~~~lA~~l~~~LG-L~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
.+.++++|.++.++|| ..+.|+|+++++.+| ++|++|||..|||..+--|+
T Consensus 244 ---~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 244 ---HEEIKELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred ---HHHHHHHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccch
Confidence 4578999999999999 999999999997445 68999999999988776665
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.65 E-value=1.7e-14 Score=141.99 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=149.7
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCCC---------------------CceEEEEccCcHHHHHHHHHHHHhCCCceee
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQG---------------------PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q~---------------------~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi 104 (337)
-+.|..+|+++|+.+..+|++..-+-.. ..|+|..-... .....++ +.+++ ..+.
T Consensus 14 ~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~-i~~~~l~-~l~~~--~~~~ 89 (372)
T PRK06019 14 GRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFEN-VPAEALD-ALAAR--VPVP 89 (372)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCC-CCHHHHH-HHhcC--CeeC
Confidence 3457788999999999999864221111 23333211110 0112333 34443 4678
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
.+++++..++||..+-+.|.++ +|++|++..+.+ .+++.+.. ..++||+|+||..+ |+ +++|+.++.+
T Consensus 90 p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~~-g~-~g~Gv~~v~~ 157 (372)
T PRK06019 90 PGPDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRRG-GY-DGKGQWVIRS 157 (372)
T ss_pred cCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCCC-Cc-CCCCeEEECC
Confidence 9999999999999999999865 899999998863 22233222 35899999999873 33 5789999999
Q ss_pred hhhhhcc-----CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCC
Q 019652 185 QYSLKKL-----EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 256 (337)
Q Consensus 185 ~~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~ 256 (337)
+++|... ..++++||||+-+.++-|.++++ ++.+. +...+.. ..|.+.++. .+..+
T Consensus 158 ~~el~~a~~~~~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~--p~~e~~~------~~gi~~~~~--------~pa~~ 221 (372)
T PRK06019 158 AEDLEAAWALLGSVPCILEEFVPFEREVSVIVARGRDGEVVFY--PLVENVH------RNGILRTSI--------APARI 221 (372)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCeEEEEEEEECCCCCEEEe--CCcccEE------eCCEEEEEE--------CCCCC
Confidence 9988653 46899999999668898887753 23322 1111111 123333211 11222
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 257 DPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 257 ~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
++.. .+.++++|.++.++||+. ++++|+.++. +| ++||+|||.=|+=.|
T Consensus 222 ~~~~-----~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg 271 (372)
T PRK06019 222 SAEL-----QAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSG 271 (372)
T ss_pred CHHH-----HHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCcc
Confidence 2211 356799999999999975 7789999974 34 699999999998544
No 31
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.64 E-value=2.7e-15 Score=153.48 Aligned_cols=261 Identities=22% Similarity=0.289 Sum_probs=175.6
Q ss_pred eEEEEEEecccccccccchh-HHhhhhhcceEEEEec----CCCCCCCCCCceEEEEccCcHHHHHHHHHHHHh-CCCce
Q 019652 29 LVVVGYALTSKKTKSFLQPK-LEGLARNKGILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVT 102 (337)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~-l~~~a~~~Gi~~v~iD----~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~-~p~v~ 102 (337)
..+||.|.-+||.++=-.+. +-+++.-.=++++... ++.|.+.=.-.|++|-=.+.--=......|++. +| .
T Consensus 40 ~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP--F 117 (1018)
T KOG1057|consen 40 QIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP--F 117 (1018)
T ss_pred ceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC--e
Confidence 45999999998866542222 2223332334443322 344555556778777544443223667789984 45 8
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-ChhHHHH-------HcC--CCCcEEEeeccCCC
Q 019652 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SIPDVVL-------KAG--LTLPLVAKPLVADG 172 (337)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-~~~~~l~-------~~~--l~fP~VvKp~~a~G 172 (337)
|||+++..+.+.||...|++|.. .+|++|++.+++++.. .....+. -.| +.=|+|-||+.|
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~-- 188 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA-- 188 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc--
Confidence 99999999999999999999985 4899999999975542 1122221 122 344999999985
Q ss_pred CCcceeeEEEeChh---h----hhcc---------------CCCeEEEecccCC-eeEEEEEECCEEEEE-EEecCCCCc
Q 019652 173 SAKSHELSLAYDQY---S----LKKL---------------EPPLVLQEFVNHG-VLFKVYIVGEAIKVV-RRFSLPDVT 228 (337)
Q Consensus 173 s~~sh~m~iv~~~~---~----L~~l---------------~~p~vvQeFI~h~-~d~KV~VIG~~v~~~-~R~Slp~~~ 228 (337)
+.|+++|.+.-+ | +++. ...++.+||++++ .|.|||.||..+..+ .|+|. .+.
T Consensus 189 --EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP-vvD 265 (1018)
T KOG1057|consen 189 --EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP-VVD 265 (1018)
T ss_pred --ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc-ccc
Confidence 699999999872 1 2221 3468999999999 999999999887755 78874 322
Q ss_pred cccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCC
Q 019652 229 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFP 308 (337)
Q Consensus 229 ~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fP 308 (337)
|...=. + .+..... | ..+.+ ..+.+|.+++-+++-.++|||+++.+ | .-||||||-|-
T Consensus 266 --------GkV~Rn--s----~GKEvRY-p--v~Ls~--~EK~iA~KVciAF~Q~VCGFDLLRa~--G-~SYVcDVNGfS 323 (1018)
T KOG1057|consen 266 --------GKVERN--S----DGKEVRY-P--VILNS--SEKQIARKVCIAFKQTVCGFDLLRAN--G-KSYVCDVNGFS 323 (1018)
T ss_pred --------ceeeec--C----CCceeec-e--eecCh--hhHHHHhHHHhhccccccchHHhhcC--C-ceEEEecccee
Confidence 111000 0 0001111 0 12232 23889999999999999999999976 4 46899999999
Q ss_pred CCCCCccchHHHHHHHH
Q 019652 309 GYGKMPEYEHIFTDFLL 325 (337)
Q Consensus 309 g~~gv~~~~~~l~~~l~ 325 (337)
-.+....|+.-.+..|-
T Consensus 324 FVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 324 FVKNSNKYYDDCAKILG 340 (1018)
T ss_pred eeecchhhhHHHHHHHh
Confidence 98888888865555554
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.63 E-value=1e-14 Score=127.54 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=102.2
Q ss_pred HhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc
Q 019652 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191 (337)
Q Consensus 112 ~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l 191 (337)
+|.||..+.+++.++ +|++|++..+.+ ..++..... .++||+|+||..+. +|.++.++.++++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAE--DLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHH--HSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 588999999999976 899999999863 223333233 36799999998865 46799999999988764
Q ss_pred -----------CCCeEEEecccCC-eeEEEEEECCEEEEE-EEecCCCCccccccCCCceeeecCcccccccCCCCCCCc
Q 019652 192 -----------EPPLVLQEFVNHG-VLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 258 (337)
Q Consensus 192 -----------~~p~vvQeFI~h~-~d~KV~VIG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 258 (337)
..++++||||+.. ..+.+++.++++++. ..+...... .... ....... ....
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~-~~~~~~~-----------~~~~-- 132 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSP-GHFS-GGVPTGY-----------SVPS-- 132 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEET-CCCS-SSEEEEE-----------EES---
T ss_pred HHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEecccc-cccc-cceeeee-----------eccc--
Confidence 3589999999943 788888888887543 222211100 0000 0000000 0000
Q ss_pred cccCCCChHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 259 CVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 259 ~~~~~p~~~~~~~lA~~l~~~LGL--~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
+.+..+.+++++.++.+.+|+ ..+++|++.+.+ | ++++||||.=||
T Consensus 133 ---~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 133 ---EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp ----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred ---ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 111126679999999999998 888999999975 6 799999998765
No 33
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.62 E-value=6.9e-14 Score=144.88 Aligned_cols=243 Identities=15% Similarity=0.130 Sum_probs=158.5
Q ss_pred CceEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCC--C-------------------CceEEEEccCcH
Q 019652 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ--G-------------------PFDIVLHKLTGK 85 (337)
Q Consensus 27 ~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q--~-------------------~fDvilhK~t~~ 85 (337)
....+||....- ..-..+..+|++.|++++.+|.+..-.-. . ..|+|..-...-
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 456678888776 44456888999999999999997521110 0 122221111000
Q ss_pred HHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEE
Q 019652 86 EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVA 165 (337)
Q Consensus 86 ~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~Vv 165 (337)
....++.+.+. +++|..+++++..++||+.+-+.|.++ +|++|++..+.+ .+++.+. ...++||+|+
T Consensus 95 -~~~~l~~le~~--gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~--~~~ig~P~Vv 161 (577)
T PLN02948 95 -DVDTLEALEKQ--GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKA--GDLFGYPLML 161 (577)
T ss_pred -CHHHHHHHHhc--CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHH--HHhcCCcEEE
Confidence 01233333333 566789999999999999999999864 899999998862 2223222 2358999999
Q ss_pred eeccCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCC
Q 019652 166 KPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTS 235 (337)
Q Consensus 166 Kp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~ 235 (337)
||..+ |+ +|.|+.++.++++|... +.++++|+||+..+++-|.|+++ .+.+. |..+. . ..
T Consensus 162 KP~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~-----p~~E~--~-~~ 231 (577)
T PLN02948 162 KSRRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGSTRCY-----PVVET--I-HK 231 (577)
T ss_pred EeCCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCEEEe-----cCccc--E-EE
Confidence 99873 33 56789999999887542 46899999998559999999953 23321 22110 0 01
Q ss_pred CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 236 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 236 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
.+++.+. ..++.+++.. .+.++++|.++.++||.. ++.+|+.++.+ | .+||+|||.-||..|
T Consensus 232 ~~~~~~~--------~~Pa~l~~~~-----~~~~~~~A~~~~~aLg~~Gv~~vEffv~~d-G-~v~v~EInpRpg~sG 294 (577)
T PLN02948 232 DNICHVV--------EAPANVPWKV-----AKLATDVAEKAVGSLEGAGVFGVELFLLKD-G-QILLNEVAPRPHNSG 294 (577)
T ss_pred CCeeEEE--------EECCCCCHHH-----HHHHHHHHHHHHHHhCCCeEEEEEEEEcCC-C-cEEEEEEeCCCCCCC
Confidence 1222110 0122232222 356789999999999865 44699999753 4 689999999999655
No 34
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.61 E-value=1.3e-13 Score=151.72 Aligned_cols=230 Identities=14% Similarity=0.266 Sum_probs=150.3
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCCC------------------------CCCceEEEEccCcHHHHHHHHHHHHh
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQT 97 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------q~~fDvilhK~t~~~~~~~l~~y~~~ 97 (337)
-++.+..+++++++.|++++.+|.+-.... ....|.|+.-..+...........+
T Consensus 573 fd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~- 651 (1050)
T TIGR01369 573 FDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEE- 651 (1050)
T ss_pred cchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHH-
Confidence 455666789999999999999988632111 0135556555444322222222222
Q ss_pred CCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 98 HPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 98 ~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
.|++++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. ++
T Consensus 652 -~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~--~~~igyPvIVKP~~~~---Gg 717 (1050)
T TIGR01369 652 -AGVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEF--ASEIGYPVLVRPSYVL---GG 717 (1050)
T ss_pred -CCCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHH--HHhcCCCEEEEECCCC---CC
Confidence 367765 7899999999999999999975 899999998862 2233322 2358999999997754 46
Q ss_pred eeeEEEeChhhhhcc---------CCCeEEEecccCC--eeEEEEEECCEEEEE--EEe-cCCCCccccccCCCceeeec
Q 019652 177 HELSLAYDQYSLKKL---------EPPLVLQEFVNHG--VLFKVYIVGEAIKVV--RRF-SLPDVTKQDLSTSAGVFRFP 242 (337)
Q Consensus 177 h~m~iv~~~~~L~~l---------~~p~vvQeFI~h~--~d~KV~VIG~~v~~~--~R~-Slp~~~~~~~~~~~g~~~~~ 242 (337)
.+|.++.++++|... +.|+++||||+.| ..+-+++-|+++++. +.. ...+...++ ....++
T Consensus 718 ~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGd-----s~~~~P 792 (1050)
T TIGR01369 718 RAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGD-----STCVLP 792 (1050)
T ss_pred CCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCC-----ceEEec
Confidence 799999999988652 4689999999866 555666667776643 121 111111000 000000
Q ss_pred CcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 243 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
...+++. ..+.++++|.+++++||+. ++++|+++++ + ++||||||.-++
T Consensus 793 ----------~~~l~~~-----~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 793 ----------PQTLSAE-----IVDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred ----------CCCCCHH-----HHHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 0111111 1246789999999999974 3459999975 3 699999999876
No 35
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.60 E-value=1.2e-13 Score=132.54 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=115.7
Q ss_pred Cc-eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 100 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 100 ~v-~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
|+ ++.++++++..+.||..+.+.|.++ +|++|++..+++ .+++.+.+....++||+|+||..+. +|.+
T Consensus 95 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~---~s~g 163 (326)
T PRK12767 95 GVKVLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGS---ASIG 163 (326)
T ss_pred CcEEEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCC---CccC
Confidence 54 5679999999999999999999975 799999988752 2223222223568999999996643 5678
Q ss_pred eEEEeChhhhhcc---CCCeEEEecccCCeeE--EEEEE-CCEEEE-EEEecCCCCccccccCCCceeeecCcccccccC
Q 019652 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGVLF--KVYIV-GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 251 (337)
Q Consensus 179 m~iv~~~~~L~~l---~~p~vvQeFI~h~~d~--KV~VI-G~~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~ 251 (337)
+.++.+.++|.+. ..++++||||. |.++ -+++- ++++.+ ..++.+.. . .|. ...
T Consensus 164 v~~v~~~~el~~~~~~~~~~lvqeyi~-G~e~~v~~~~~~~G~~~~~~~~~~~~~-~-------~g~-----~~~----- 224 (326)
T PRK12767 164 VFKVNDKEELEFLLEYVPNLIIQEFIE-GQEYTVDVLCDLNGEVISIVPRKRIEV-R-------AGE-----TSK----- 224 (326)
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEeccC-CceEEEEEEEcCCCCEEEEEEeeeeee-c-------CCc-----eeE-----
Confidence 9999999888653 45999999995 6444 45554 455543 33332210 0 000 000
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 252 DDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.. .. +.+.+.+++.++.++||+ .+++||+++++ | ++++||||.-+|
T Consensus 225 -~~-------~~-~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 225 -GV-------TV-KDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred -EE-------Ec-CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 01 125579999999999999 47889999986 3 699999997443
No 36
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.60 E-value=1.2e-13 Score=152.36 Aligned_cols=230 Identities=15% Similarity=0.246 Sum_probs=150.9
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCCC------------------------CCCceEEEEccCcHHHHHHHHHHHHh
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKEWRQILEEYRQT 97 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------q~~fDvilhK~t~~~~~~~l~~y~~~ 97 (337)
=++.+..++++++++|++++.+|.+-.... ....|.|+.-++++........+.+.
T Consensus 573 fdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~~la~~le~~ 652 (1066)
T PRK05294 573 FDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPLKLAKALEAA 652 (1066)
T ss_pred cchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHHHHHHHHHHC
Confidence 355667789999999999999997652211 01456677666655443333444443
Q ss_pred CCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 98 HPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 98 ~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|+.++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. +|
T Consensus 653 --Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvvVKP~~~~---Gg 717 (1066)
T PRK05294 653 --GVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEV--AEEIGYPVLVRPSYVL---GG 717 (1066)
T ss_pred --CCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHH--HHhcCCCeEEEeCCCC---CC
Confidence 77766 6889999999999999999875 899999998863 2223222 2358999999996643 57
Q ss_pred eeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEE--CCEEEEE--EEe-cCCCCccccccCCCceeeec
Q 019652 177 HELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--RRF-SLPDVTKQDLSTSAGVFRFP 242 (337)
Q Consensus 177 h~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~R~-Slp~~~~~~~~~~~g~~~~~ 242 (337)
.+|.++.++++|..+ +.|+++||||.....+-|-++ |+.+.+. ++. .......++ ....+
T Consensus 718 ~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~- 791 (1066)
T PRK05294 718 RAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL- 791 (1066)
T ss_pred CcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe-
Confidence 899999999888642 568999999983345555555 4434331 111 110111010 00000
Q ss_pred CcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 243 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 243 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
....+++. ..+.++++|.++.++||+ .++++|+++++ + ++||||||.-|+
T Consensus 792 ---------p~~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 792 ---------PPQTLSEE-----IIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred ---------cCCCCCHH-----HHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 01111111 134678999999999999 46679999974 3 699999998776
No 37
>PRK07206 hypothetical protein; Provisional
Probab=99.58 E-value=2.9e-13 Score=134.49 Aligned_cols=230 Identities=16% Similarity=0.157 Sum_probs=145.6
Q ss_pred hhHHhhhhhcceEEEEecCCCCCC----------C------------------CCCceEEEEccCcHHHHHHHHHHHHhC
Q 019652 47 PKLEGLARNKGILFVAIDQNRPLS----------D------------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~l~----------~------------------q~~fDvilhK~t~~~~~~~l~~y~~~~ 98 (337)
..+.++|+++|+.++.+|.+.... . ...+|+|++ +.+....... ..+++
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~--~~e~~~~~~a-~l~~~ 91 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA--GAESGVELAD-RLAEI 91 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE--CCCccHHHHH-HHHHh
Confidence 457788899999999888543111 0 114456664 2222222222 23344
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCC---cEEEeeccCCCCCc
Q 019652 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL---PLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f---P~VvKp~~a~Gs~~ 175 (337)
-+++.-++++++..++||+.|.+.|.++ +|++|++..+. +.+++.+.+. .++| |+|+||..+. +
T Consensus 92 l~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~--~~g~~~~P~VvKP~~g~---g 158 (416)
T PRK07206 92 LTPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLR--ENGLIDRPVVIKPLESA---G 158 (416)
T ss_pred cCCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHH--hcCCCCCCEEEeCCCCC---C
Confidence 5666689999999999999999999965 89999998885 2223333333 3555 9999998754 5
Q ss_pred ceeeEEEeChhhhhcc--------------CCCeEEEecccCC--eeEEEEEECCEEEEE--EEecCCCCccccccCCCc
Q 019652 176 SHELSLAYDQYSLKKL--------------EPPLVLQEFVNHG--VLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAG 237 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l--------------~~p~vvQeFI~h~--~d~KV~VIG~~v~~~--~R~Slp~~~~~~~~~~~g 237 (337)
|.++.++.+.++|.+. +.++++||||. | ..+-+++.++++++. .+..-.... .+
T Consensus 159 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~-G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-------~~ 230 (416)
T PRK07206 159 SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI-GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-------SG 230 (416)
T ss_pred CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc-cEEEEEEEEEECCEEEEEEeEEeeecccC-------CC
Confidence 6799999999887542 25799999998 6 444455556665532 222111110 01
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeEEEEEecCCCCCCCCcc
Q 019652 238 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 315 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL--~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~ 315 (337)
.+.+.... .. |. ..+..+.+.+++.++.++||+ ..+.+|++++++ | +++||||.=||=..++.
T Consensus 231 ~~~~~~~~-------~~---p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~-g--~~liEin~R~~G~~~~~ 295 (416)
T PRK07206 231 STVYDYDE-------FL---DY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTAD-G--PRLIEIGARLDGGLHPD 295 (416)
T ss_pred Cceecccc-------cC---Cc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCC-C--CEEEEECCccCCCCccc
Confidence 11110000 00 00 011235678999999999998 567899998753 3 78999999988554443
No 38
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.58 E-value=2.6e-13 Score=133.81 Aligned_cols=230 Identities=16% Similarity=0.240 Sum_probs=146.8
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCC-----------------------CCCceEEEEccCcHHHHHHHHHHHHhCCCc
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v 101 (337)
....+..++++.|++++.+|.+..-.. ...+|+|+.-..+- ....+.++.+. ++
T Consensus 23 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~-~~~~~~~l~~~--g~ 99 (395)
T PRK09288 23 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAI-ATDALVELEKE--GF 99 (395)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcC-CHHHHHHHHhc--CC
Confidence 345577788999999998887641110 11466666533221 12233444333 77
Q ss_pred eeeChHHHHHHhccHHHHHHHHH-hccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~-~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (337)
++..++++++.++||..+-+.|. ++ +|++|++..+++ .+++.+.. ..++||+|+||..+ + +|.++.
T Consensus 100 ~~~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g--~-~s~Gv~ 166 (395)
T PRK09288 100 NVVPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMS--S-SGKGQS 166 (395)
T ss_pred eeCCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCC--c-CCCCeE
Confidence 77788999999999999999884 43 899999998863 22332222 35899999999753 3 577899
Q ss_pred EEeChhhhhcc-----------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeeecCccc
Q 019652 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 246 (337)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 246 (337)
++.++++|.+. +.++++||||+.+.++.|.++.+ ..... ....+.. ..+.+.. +
T Consensus 167 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~--~~~~~~~------~~~~~~~---~- 234 (395)
T PRK09288 167 VVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFC--APIGHRQ------EDGDYRE---S- 234 (395)
T ss_pred EECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe--cCcccEE------ECCEEEE---E-
Confidence 99999887542 26899999998668888887743 22221 1111110 0111110 0
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc
Q 019652 247 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
..+..+++.. .+.++++|.++.++||. ..+.+|++++++ ++||||||.=||-.+..
T Consensus 235 ----~~p~~l~~~~-----~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~ 291 (395)
T PRK09288 235 ----WQPQPMSPAA-----LEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMV 291 (395)
T ss_pred ----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCcce
Confidence 0012222111 24568899999999985 345699998652 58999999999865443
No 39
>PRK06849 hypothetical protein; Provisional
Probab=99.56 E-value=3.4e-13 Score=133.17 Aligned_cols=168 Identities=18% Similarity=0.289 Sum_probs=114.7
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (337)
+...++++++.|+||..+.+.+.++ +|++|++..+++ .+++.+ +.....+||+|+||..++| ++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~~---~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSRF---VRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCcccC---CCeEEE
Confidence 4568899999999999999999975 899999999863 222322 2222238999999988654 457777
Q ss_pred EeChhhhhcc----CCCeEEEecccCC-eeEEEEEECCEEEEE-EEecCCCCccccccCCCceeeecCcccccccCCCCC
Q 019652 182 AYDQYSLKKL----EPPLVLQEFVNHG-VLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 255 (337)
Q Consensus 182 v~~~~~L~~l----~~p~vvQeFI~h~-~d~KV~VIG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~ 255 (337)
+.+++.+..+ ..|+++||||+-. ...-.++.++++.+. .++ +....+ .|. ...
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~--~~~~~~-----~~~--------------~~~ 229 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYK--PEYCAG-----SGA--------------QIA 229 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEee--ccccCC-----CCc--------------eeE
Confidence 8888777765 3589999999933 445566677777643 211 111000 000 000
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 256 LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 256 ~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
..+ . ..+.+.+++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 230 ~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 230 FQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 000 0 1246799999999999988 7789999874 45 699999996554
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.54 E-value=4.6e-13 Score=134.53 Aligned_cols=231 Identities=14% Similarity=0.157 Sum_probs=142.0
Q ss_pred cccchhHHhhhhhcceEEEEecC--CC--CCCC----------------------------CCCceEEEEccCc-HHHHH
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQ--NR--PLSD----------------------------QGPFDIVLHKLTG-KEWRQ 89 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~--~~--~l~~----------------------------q~~fDvilhK~t~-~~~~~ 89 (337)
..+.-+++++|++.|++.+.++- +. +... ...+|+|++=... .+. .
T Consensus 13 g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~-~ 91 (445)
T PRK08462 13 GEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSEN-Q 91 (445)
T ss_pred cHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccC-H
Confidence 34566788899999999888843 22 1000 0134445443311 000 1
Q ss_pred HHHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEe
Q 019652 90 ILEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAK 166 (337)
Q Consensus 90 ~l~~y~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvK 166 (337)
.+.+..++ -|+++ -.++++++.++||..+.+.|.++ +|++|++. .+. +.+++... ...++||+|+|
T Consensus 92 ~~a~~~e~-~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~~--~~~~g~PvvvK 160 (445)
T PRK08462 92 NFVEICSH-HNIKFIGPSVEVMALMSDKSKAKEVMKRA-------GVPVIPGSDGALK-SYEEAKKI--AKEIGYPVILK 160 (445)
T ss_pred HHHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEE
Confidence 22222322 36754 58889999999999999999865 89998754 232 22222222 23589999999
Q ss_pred eccCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE---EEEE-EEe-cCCCCc
Q 019652 167 PLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA---IKVV-RRF-SLPDVT 228 (337)
Q Consensus 167 p~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~---v~~~-~R~-Slp~~~ 228 (337)
|..++ +|.||.++.++++|.+. +.++++||||..+..+.+.|+|+. ++.. .|. +...
T Consensus 161 P~~g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~-- 235 (445)
T PRK08462 161 AAAGG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQR-- 235 (445)
T ss_pred eCCCC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEecccccee--
Confidence 97754 57899999999888642 346999999985677888888542 2221 111 1100
Q ss_pred cccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCC
Q 019652 229 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 307 (337)
Q Consensus 229 ~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~f 307 (337)
....+ + .. .....+++. ..+.+.++|.++.++||+.-++ ||++++.+ | ++||+|||.=
T Consensus 236 ------~~~~~-~---~~----~p~~~l~~~-----~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR 294 (445)
T PRK08462 236 ------RHQKL-I---EE----SPAVVLDEK-----TRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTR 294 (445)
T ss_pred ------cccce-E---EE----cCCCCCCHH-----HHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECC
Confidence 00000 0 00 000011111 1356789999999999997555 99999853 3 5899999998
Q ss_pred CCCC
Q 019652 308 PGYG 311 (337)
Q Consensus 308 Pg~~ 311 (337)
+|-.
T Consensus 295 ~~~~ 298 (445)
T PRK08462 295 LQVE 298 (445)
T ss_pred cCcC
Confidence 8643
No 41
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.52 E-value=1.1e-12 Score=132.77 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=118.8
Q ss_pred Cce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|++ +-.++++++.|.||..+.+++.++ +|++|++. .+. +.+++.+. ...++||+|+||..++ +|
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~~--~~~igyPvvvKp~~gg---gg 168 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALEV--AARIGYPLMIKAAAGG---GG 168 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHHH--HHHhCCCEEEEECCCC---CC
Confidence 554 456789999999999999999865 89998774 443 22222222 2358999999997754 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE--EE-EEEEe-cCCCCccccccCCCcee
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA--IK-VVRRF-SLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~--v~-~~~R~-Slp~~~~~~~~~~~g~~ 239 (337)
.||.++.++++|.+. +.++++|+||+.++.+-|-|+||. ++ +..|. +.... ....+
T Consensus 169 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~~~~~~~~~~~~~~r~-------~~ki~ 241 (467)
T PRK12833 169 RGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGERVVHLFERECSLQRR-------RQKIL 241 (467)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCCcEEEEEEeecccccC-------CccEE
Confidence 899999999888641 467999999996788888888763 23 22332 11000 00001
Q ss_pred eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.. +....+++. ..+.+.++|.++.++||+.-.+ +|++++..+| .+||||||.=++..
T Consensus 242 e~---------~p~~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 242 EE---------APSPSLTPA-----QRDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EE---------CCCCCCCHH-----HHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 00 000111111 1356789999999999998654 9999985445 68999999888643
No 42
>PRK05586 biotin carboxylase; Validated
Probab=99.51 E-value=1.4e-12 Score=131.21 Aligned_cols=178 Identities=12% Similarity=0.200 Sum_probs=117.8
Q ss_pred Cce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|++ +--+++++..++||..+.+.|.++ +|++|++. .+. +.+++.+. ...++||+|+||..++ +|
T Consensus 99 gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~~gg---gg 165 (447)
T PRK05586 99 NIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKASAGG---GG 165 (447)
T ss_pred CCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---CC
Confidence 554 567889999999999999999864 89999874 333 22222222 2358999999997744 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceee
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFR 240 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~ 240 (337)
+|+.++.++++|.+. +.++++||||..+..+.|.|+++ ++.....+... + ..
T Consensus 166 ~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~------~------~~ 233 (447)
T PRK05586 166 RGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCS------L------QR 233 (447)
T ss_pred CeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecc------e------Ee
Confidence 899999999887542 36899999998558899988875 23322111000 0 00
Q ss_pred ecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 241 FPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.+... . ..+....+++.. .+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.=||-.
T Consensus 234 ~~~~~-~-~~~p~~~l~~~~-----~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 234 RNQKV-L-EEAPSPVMTEEL-----RKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred cccce-E-EEcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 00000 0 000000111111 346789999999999998776 9999985 35 68999999888644
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.51 E-value=1.8e-12 Score=128.00 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=130.5
Q ss_pred hhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHh
Q 019652 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~ 125 (337)
.++.+.|++.+++++.+.++.++ .......+.+. |+.++ .++++++.+.||..+.+.|.+
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l-----------------~~~~~d~l~~~--Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPL-----------------IDGLADILRAN--GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHH-----------------HHHHHHHHHhC--CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 45888999999988888776533 11222333333 77777 455999999999999999986
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc---------CCCeE
Q 019652 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLV 196 (337)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~v 196 (337)
+ +|++|++..+.+ ..+..+.+ ..++||+|+||..+ + +|.++.++.+.++|.+. ..+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~--~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDGL--A-AGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCC--C-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 5 899999988752 22232322 35899999999753 3 57899999999887531 35799
Q ss_pred EEecccCC-eeEEEEEECCEEEEE---EEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHH
Q 019652 197 LQEFVNHG-VLFKVYIVGEAIKVV---RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 272 (337)
Q Consensus 197 vQeFI~h~-~d~KV~VIG~~v~~~---~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~l 272 (337)
+||||.-. +.+-+++-|+.++.. .+.....+. ++... +.... +.......+++.. .....+++
T Consensus 145 vEe~i~G~E~sv~~~~~g~~~~~~~~~~~~~kr~~~-~d~g~-------~tgg~-~~~~p~~~l~~~~----~~~~~~~i 211 (379)
T PRK13790 145 FETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFD-HDEGP-------NTGGM-GAYCPVPHISDDV----LKLTNETI 211 (379)
T ss_pred EEEcccCceEEEEEEeeCCEEEeccccccccccccc-CCCCC-------cCCCC-ceEeeCCCCCHHH----HHHHHHHH
Confidence 99999732 444555556543311 111000000 00000 00000 0000000011110 01122678
Q ss_pred HHHHHHHh---CCcEEE---EEEEEeCCCCCeEEEEEecCCCCC
Q 019652 273 AKELRRQL---GLRLFN---LDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 273 A~~l~~~L---GL~l~G---vDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
+.++.++| |+.++| +|+++++ +| ++|+|+|.=||-
T Consensus 212 ~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~ 252 (379)
T PRK13790 212 AQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCC
Confidence 88888888 667666 5999864 23 899999998764
No 44
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.50 E-value=2.4e-12 Score=131.40 Aligned_cols=175 Identities=11% Similarity=0.201 Sum_probs=118.6
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
|++++ .++++++.+.||..+.+++.++ +|++|++... -.+.+++.+. ...++||+|+||..++ ++.
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~~--a~~igyPvvIKp~~Gg---GG~ 166 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKEI--AEEIGYPVIIKASAGG---GGI 166 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHHH--HHHhCCCEEEEeCCCC---CCC
Confidence 67666 5689999999999999999865 8998876542 1122222222 2358999999997754 568
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCCcee
Q 019652 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~g~~ 239 (337)
||.++.++++|.+. +.++++|+||..++.+.|-|+||. ++...|. |... .
T Consensus 167 Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqr--------r---- 234 (499)
T PRK08654 167 GMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQR--------R---- 234 (499)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeecccccc--------C----
Confidence 99999999887542 357999999985688888888653 2233332 2110 0
Q ss_pred eecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
|+... ..+ ++ .+++.. .+.+.++|.++.+++|+.-.| ||++.++ | ++|++|||.=++..
T Consensus 235 --~qk~i--e~~-Pa~~l~~~~-----~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 235 --HQKLI--EEA-PSPIMTPEL-----RERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred --ccceE--EEC-CCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 00000 000 11 121111 356789999999999999877 9999864 3 69999999888754
No 45
>PLN02735 carbamoyl-phosphate synthase
Probab=99.50 E-value=2.9e-12 Score=141.29 Aligned_cols=232 Identities=14% Similarity=0.226 Sum_probs=151.6
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCC------------------------CCCceEEEEccCcHH---HHHHHHHHHHh
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSD------------------------QGPFDIVLHKLTGKE---WRQILEEYRQT 97 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------q~~fDvilhK~t~~~---~~~~l~~y~~~ 97 (337)
.+-..+.++++.|++.+.+|-+-.... ....|+|+.-...+. ....+.++..+
T Consensus 596 ~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e 675 (1102)
T PLN02735 596 CCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDK 675 (1102)
T ss_pred eHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHh
Confidence 344477899999999999988643211 114677776665542 23445555443
Q ss_pred CC--------Cc-eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeec
Q 019652 98 HP--------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 98 ~p--------~v-~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (337)
++ ++ ++--+++++..+.||..+-++|.++ +|++|++..+.+ .++..+. ...++||+|+||.
T Consensus 676 ~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~~iGyPvvVKP~ 745 (1102)
T PLN02735 676 NPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AKRIGYPVVVRPS 745 (1102)
T ss_pred ccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HHhcCCCeEEEeC
Confidence 32 43 4568899999999999999999865 899999988752 2222222 2458999999997
Q ss_pred cCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEecCCCCccccccCC
Q 019652 169 VADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTS 235 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~Slp~~~~~~~~~~ 235 (337)
.+. ++.+|.+|.++++|... +.|+++|+||..++.+-|-+++| .+.+. .+.-.. .
T Consensus 746 ~g~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~---~------ 813 (1102)
T PLN02735 746 YVL---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIE---Q------ 813 (1102)
T ss_pred CCC---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeee---c------
Confidence 743 46799999999988652 35899999998679999999975 23321 111010 0
Q ss_pred CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeEEEEEecCCCC
Q 019652 236 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 236 ~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~-GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.|. |..... .......+++.. .+.++++|.+++++||+.-+ .+|++++.+ | ++||+|||.-||
T Consensus 814 ~gv---hsGds~-~~~P~~~L~~e~-----~~~i~~~a~ki~~~L~~~G~~~vqf~v~~d-g-~~yviEiNpR~s 877 (1102)
T PLN02735 814 AGV---HSGDSA-CSLPTQTIPSSC-----LATIRDWTTKLAKRLNVCGLMNCQYAITPS-G-EVYIIEANPRAS 877 (1102)
T ss_pred cCc---cCCCcc-EEecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeeEEEEEcCC-C-cEEEEEEeCCCC
Confidence 000 000000 000001111111 34678899999999997644 599999642 4 689999999998
No 46
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.49 E-value=6e-12 Score=138.81 Aligned_cols=228 Identities=16% Similarity=0.314 Sum_probs=145.4
Q ss_pred cccchhHHhhhhhcceEEEEecCCCCCC-------C-----------------CCCceEEEEccCcHHHHHHHHHHHHhC
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~~~~l~-------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~ 98 (337)
++.+-..++++++.|++++.+|.+-... + ...+|.|+.-..+...........+
T Consensus 575 dy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~~~~la~~le~-- 652 (1068)
T PRK12815 575 DYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQTAINLAKGLEE-- 652 (1068)
T ss_pred chhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHHHHHHHHHHHH--
Confidence 4445556788899999999999874211 0 1245666654444322122222222
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
.|+.++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. ++.
T Consensus 653 ~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~---Gg~ 719 (1068)
T PRK12815 653 AGLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVI---GGQ 719 (1068)
T ss_pred CCCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCC---CCC
Confidence 367654 6799999999999999999975 899999998863 2222222 2458999999997754 568
Q ss_pred eeEEEeChhhhhcc-------CCCeEEEecccCCeeEEEEEE--CCEEEEE--E-EecCCCCccccccCCCceeeecCcc
Q 019652 178 ELSLAYDQYSLKKL-------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--R-RFSLPDVTKQDLSTSAGVFRFPRVS 245 (337)
Q Consensus 178 ~m~iv~~~~~L~~l-------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~-R~Slp~~~~~~~~~~~g~~~~~~~s 245 (337)
+|.++.++++|.++ ..|+++|+||+ |.++-|.++ |+.+.+. . +.....+..++ +..
T Consensus 720 gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~-G~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~sGd-----------s~~ 787 (1068)
T PRK12815 720 GMAVVYDEPALEAYLAENASQLYPILIDQFID-GKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGD-----------SIA 787 (1068)
T ss_pred CEEEECCHHHHHHHHHHhhcCCCCEEEEEeec-CceEEEEEEEcCCceEEeeEEEEeeccCCcCCC-----------eeE
Confidence 99999999888652 57899999995 645555545 4444321 1 11100111000 000
Q ss_pred cccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 246 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
...+..+++. ..+.+++++.+++++||+. +++||+++++ + ++||||||.-+|
T Consensus 788 ----v~pp~~l~~~-----~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 788 ----VLPPQSLSEE-----QQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred ----EECCCCCCHH-----HHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 0001112111 1356789999999999965 5679999975 2 589999999887
No 47
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.49 E-value=3.1e-12 Score=128.78 Aligned_cols=232 Identities=13% Similarity=0.164 Sum_probs=141.3
Q ss_pred ccchhHHhhhhhcceEEEEecCCC--C--C---CC-------------------------CCCceEEEEccCc-HHHHHH
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNR--P--L---SD-------------------------QGPFDIVLHKLTG-KEWRQI 90 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~--~--l---~~-------------------------q~~fDvilhK~t~-~~~~~~ 90 (337)
.+..+++++|+++|++++-+|.+. + - .+ ...+|+|++-.+- .+...
T Consensus 12 ~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~- 90 (449)
T TIGR00514 12 EIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENAN- 90 (449)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHH-
Confidence 345678899999999999997631 1 0 00 0145555553311 01111
Q ss_pred HHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEee
Q 019652 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 167 (337)
Q Consensus 91 l~~y~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (337)
+.+..++ -|+++ -.++++++.|+||..+.+.|.++ +|++|++. .+. +.+++.+. ...++||+|+||
T Consensus 91 ~a~~~e~-~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~~--~~~ig~PvvvKP 159 (449)
T TIGR00514 91 FAEQCER-SGFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVRI--AKRIGYPVIIKA 159 (449)
T ss_pred HHHHHHH-CCCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHHH--HHHhCCCEEEEe
Confidence 2222222 36654 47899999999999999999865 88998764 332 22222222 235899999999
Q ss_pred ccCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCcccc
Q 019652 168 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQD 231 (337)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~ 231 (337)
..++ +|.|+.++.++++|.+. ..++++||||..+..+-+-|+++ ++...... +..
T Consensus 160 ~~g~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~---~~~--- 230 (449)
T TIGR00514 160 TAGG---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGER---DCS--- 230 (449)
T ss_pred CCCC---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEecc---ccC---
Confidence 8754 46799999999887642 35799999998457788877764 23322110 000
Q ss_pred ccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCC
Q 019652 232 LSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 232 ~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
.. ..+.... ..+....+++. ..+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.=+|-
T Consensus 231 ~~------~~~~~~~--~~~p~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~ 295 (449)
T TIGR00514 231 IQ------RRHQKLL--EEAPSPALTPE-----LRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQV 295 (449)
T ss_pred ce------ecccceE--EECCCCCCCHH-----HHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCC
Confidence 00 0000000 00000111111 1346789999999999997554 9999984 34 5899999987764
Q ss_pred C
Q 019652 311 G 311 (337)
Q Consensus 311 ~ 311 (337)
.
T Consensus 296 ~ 296 (449)
T TIGR00514 296 E 296 (449)
T ss_pred C
Confidence 3
No 48
>PLN02735 carbamoyl-phosphate synthase
Probab=99.48 E-value=2.7e-12 Score=141.56 Aligned_cols=234 Identities=13% Similarity=0.207 Sum_probs=150.7
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCC------------------------CCCCceEEEEccCcHHHH---HHHH-H
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEWR---QILE-E 93 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~------------------------~q~~fDvilhK~t~~~~~---~~l~-~ 93 (337)
-+++-...++++++.|++++.+|.+-... +...+|+|++=+..+... ..+. +
T Consensus 42 ~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~ 121 (1102)
T PLN02735 42 FDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAES 121 (1102)
T ss_pred ecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhh
Confidence 34556668899999999999999864210 123678888876544221 1222 1
Q ss_pred -HHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCC-CcEEEeeccC
Q 019652 94 -YRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA 170 (337)
Q Consensus 94 -y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a 170 (337)
..++ -|++++ .+++++..+.||..+-++|.++ +|++|++..+++ .++..+. ...++ ||+|+||..+
T Consensus 122 g~Le~-~GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~--~~~iG~yPvVVKP~~~ 190 (1102)
T PLN02735 122 GILEK-YGVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEI--AEDIGEFPLIIRPAFT 190 (1102)
T ss_pred CHHHH-CCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHH--HHHhCCCCEEEEeCCC
Confidence 1222 355444 6889999999999999999865 899999988863 2222222 23476 9999999875
Q ss_pred CCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCC-eeEEEEEECC---EEEEEEEecCCCCccccccCCCc
Q 019652 171 DGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAG 237 (337)
Q Consensus 171 ~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~-~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g 237 (337)
. ++.++.++.++++|.+. ..++++||||. | ..+-|-|++| .+.++ .+.-++......+.+
T Consensus 191 ~---GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~gvh~G~- 263 (1102)
T PLN02735 191 L---GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENIDPMGVHTGD- 263 (1102)
T ss_pred C---CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEEEEEEEcCCCCEEEE--eeEEEEcCCccccCC-
Confidence 4 34588899999988652 46799999998 6 8899999975 22211 111011100000000
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 238 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL--~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
. ..- .+. .+++. ....++++|.++.++||+ ..+.+|++++..+| ++||||||.=+|
T Consensus 264 s-----~~v-----aPa~tL~~~-----~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 264 S-----ITV-----APAQTLTDK-----EYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred E-----EEE-----EeCCCCCHH-----HHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 0 000 011 12111 134678999999999998 57789999985345 799999994333
No 49
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.47 E-value=4.6e-12 Score=128.50 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=140.2
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCC-------------------------------CCceEEEEccC-cHHHHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQ-------------------------------GPFDIVLHKLT-GKEWRQILEE 93 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q-------------------------------~~fDvilhK~t-~~~~~~~l~~ 93 (337)
..+++++|+++|++++.++.+..-... ...|+|++=.. ..+. ..+.+
T Consensus 14 a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~-~~~a~ 92 (472)
T PRK07178 14 AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSEN-AELAE 92 (472)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccC-HHHHH
Confidence 456888999999999888665311000 13455554110 0011 11222
Q ss_pred HHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCChhHHHHHcCCCCcEEEeeccC
Q 019652 94 YRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVA 170 (337)
Q Consensus 94 y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a 170 (337)
..++ -|++++ .++++++.+.||..+.++|.++ +|++|++.. +. +.++.... ...++||+|+||..+
T Consensus 93 ~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~-~~~e~~~~--~~~igyPvvvKp~~g 161 (472)
T PRK07178 93 ICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLA-DLDEALAE--AERIGYPVMLKATSG 161 (472)
T ss_pred HHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCC-CHHHHHHH--HHHcCCcEEEEeCCC
Confidence 3333 266655 6689999999999999999865 789987653 22 21122221 245899999999775
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE---EE-EEEEecCCCCcccccc
Q 019652 171 DGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA---IK-VVRRFSLPDVTKQDLS 233 (337)
Q Consensus 171 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~---v~-~~~R~Slp~~~~~~~~ 233 (337)
+ +|.||.++.++++|.+. ..++++|+||..++.+-|-|+|+. +. +..|.- . .
T Consensus 162 g---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~--s-----~- 230 (472)
T PRK07178 162 G---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDC--S-----I- 230 (472)
T ss_pred C---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEcccc--c-----e-
Confidence 4 57899999999988641 457999999986677888777542 22 222210 0 0
Q ss_pred CCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 234 TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 234 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
...+... ...+....+++.. .+.+.++|.++.++||+.-.| +|++++.+ | ++||+|||.=++-.
T Consensus 231 -----~~~~~~~--~e~~P~~~l~~~~-----~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~~ 295 (472)
T PRK07178 231 -----QRRNQKL--IEIAPSPQLTPEQ-----RAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQVE 295 (472)
T ss_pred -----EecCcce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCCC
Confidence 0000000 0000000121111 345788999999999997665 99999753 4 59999999877543
No 50
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.47 E-value=8.5e-12 Score=126.80 Aligned_cols=229 Identities=12% Similarity=0.141 Sum_probs=141.1
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCC----------------------C---------CCCceEEEEccCc-HHHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLS----------------------D---------QGPFDIVLHKLTG-KEWRQILE 92 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~----------------------~---------q~~fDvilhK~t~-~~~~~~l~ 92 (337)
+..+++++|+++|++++.++.+.... + ...+|+|++=.+. .+... +.
T Consensus 13 ~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~~-~a 91 (478)
T PRK08463 13 IAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYE-FA 91 (478)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCHH-HH
Confidence 45678889999999988777642110 0 0134555442111 01111 12
Q ss_pred HHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcE-EEEe-cCCCChhHHHHHcCCCCcEEEeecc
Q 019652 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIE-RDASSIPDVVLKAGLTLPLVAKPLV 169 (337)
Q Consensus 93 ~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~-~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (337)
+..++ -|++++ .++++++.+.||..+.+++.++ +|++|++ .... .+.+++.+. ...++||+|+||..
T Consensus 92 ~~~e~-~Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~~ 161 (478)
T PRK08463 92 KAVED-AGIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKASG 161 (478)
T ss_pred HHHHH-CCCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeCC
Confidence 22222 367766 6689999999999999999865 7899774 3332 121222222 23589999999977
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE---EE-EEEEe-cCCCCcccc
Q 019652 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQD 231 (337)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~---v~-~~~R~-Slp~~~~~~ 231 (337)
++ +|.||.++.++++|... +.++++|+||..++.+-+-|+|+. +. +..|. +..
T Consensus 162 gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~------ 232 (478)
T PRK08463 162 GG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ------ 232 (478)
T ss_pred CC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccc------
Confidence 54 56799999999887542 467999999985577777777653 22 22322 110
Q ss_pred ccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 232 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 232 ~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
..++.. ...+ +. .+++.. .+.+.++|.++.++||+.-+| +|++++. +| ++||+|||.=++
T Consensus 233 --------~~~~~~--ie~~-P~~~l~~~~-----~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~ 294 (478)
T PRK08463 233 --------RRHQKV--IEIA-PCPSISDNL-----RKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQ 294 (478)
T ss_pred --------cccCce--EEEC-CCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcC
Confidence 000000 0000 11 121111 345778999999999998777 9999985 34 699999998776
Q ss_pred CC
Q 019652 310 YG 311 (337)
Q Consensus 310 ~~ 311 (337)
-.
T Consensus 295 ~~ 296 (478)
T PRK08463 295 VE 296 (478)
T ss_pred CC
Confidence 54
No 51
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.47 E-value=5e-12 Score=127.12 Aligned_cols=177 Identities=12% Similarity=0.185 Sum_probs=115.2
Q ss_pred Ccee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|+++ -.+++++..++||..+.+.|.++ +|++|++. .+. +.+++.+. ...++||+|+||..++ +|
T Consensus 99 gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP~~g~---gs 165 (451)
T PRK08591 99 GFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKATAGG---GG 165 (451)
T ss_pred CCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---CC
Confidence 6654 47899999999999999999865 78998763 343 22222222 2358999999998754 56
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEecCCCCccccccCCCcee
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~Slp~~~~~~~~~~~g~~ 239 (337)
.|+.++.++++|.+. +..+++||||..+..+-+-|++| ++... .|. . . .... ...
T Consensus 166 ~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~-~---~---~~~~-~~~ 237 (451)
T PRK08591 166 RGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERD-C---S---LQRR-HQK 237 (451)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeccc-c---c---ceec-cee
Confidence 899999999887642 35699999998557788877764 23322 111 0 0 0000 000
Q ss_pred eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.+ .. +....+++. ..+.+.++|.++.++||+.-.+ ||++++. +| ++||+|||.=+|-.
T Consensus 238 ~~---~~----~p~~~l~~~-----~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 238 VL---EE----APSPAITEE-----LRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred EE---EE----CCCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 00 00 000011111 1356789999999999997554 9999975 34 69999999877643
No 52
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.45 E-value=4.6e-12 Score=139.81 Aligned_cols=233 Identities=15% Similarity=0.206 Sum_probs=149.1
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCC------------------------CCCCCceEEEEccCcHHHHH---HHHH--H
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPL------------------------SDQGPFDIVLHKLTGKEWRQ---ILEE--Y 94 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l------------------------~~q~~fDvilhK~t~~~~~~---~l~~--y 94 (337)
++-....+++++.|++++.+|.+... -++..+|+|++-+.++.+.. .+.+ .
T Consensus 28 ~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~ 107 (1066)
T PRK05294 28 YSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGV 107 (1066)
T ss_pred chHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCH
Confidence 34445788889999999999976421 01236788887765542211 1211 1
Q ss_pred HHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCC
Q 019652 95 RQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (337)
Q Consensus 95 ~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs 173 (337)
.++ -|+.++ -+++++..+.||..+.+.|.++ +|++|++..+++ .+++.+. ...++||+|+||..+.
T Consensus 108 le~-~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~ig~PvVVKP~~g~-- 174 (1066)
T PRK05294 108 LEK-YGVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEV--AEEIGYPVIIRPSFTL-- 174 (1066)
T ss_pred HHH-CCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHH--HHHcCCCeEEEcCCCC--
Confidence 222 267666 5789999999999999999865 899999998863 2223332 2358999999997533
Q ss_pred CcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeee
Q 019652 174 AKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRF 241 (337)
Q Consensus 174 ~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~ 241 (337)
++.|+.++.++++|.+. ..++++||||+....+-+-|+.| .+..+. +.-++.... .
T Consensus 175 -gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~g---------i 242 (1066)
T PRK05294 175 -GGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVC--SIENIDPMG---------V 242 (1066)
T ss_pred -CCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEe--eeeeccccc---------e
Confidence 56789999999988652 25799999998327888877744 233221 111111000 0
Q ss_pred cCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 242 PRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 242 ~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~--l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
|.... ... .++ .+++. ..+.++++|.++.++||+. .+.||+.++..+| +++|+|||.=++
T Consensus 243 h~g~~-~~~-~Pa~~l~~~-----~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 243 HTGDS-ITV-APAQTLTDK-----EYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred ecCCe-EEE-eCCCCCCHH-----HHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 11000 000 011 11111 1346789999999999998 7789999985445 799999995554
No 53
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.45 E-value=7.1e-12 Score=135.99 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=139.6
Q ss_pred hHHhhhhhcceEEEEecCCCCC-CC-CCCceE-EEEccCcH---------------------HHHHHHHHHHHhCCCcee
Q 019652 48 KLEGLARNKGILFVAIDQNRPL-SD-QGPFDI-VLHKLTGK---------------------EWRQILEEYRQTHPEVTV 103 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~~l-~~-q~~fDv-ilhK~t~~---------------------~~~~~l~~y~~~~p~v~V 103 (337)
.|+++|+++|+.++.++.+... .. +.-+|. +.+-.++. .+... .....++-+++-
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~~v~~-aa~lae~lglpg 96 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEV-ASEVARRLGLPA 96 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchhhHHH-HHHHHHHhCcCC
Confidence 3788899999999998865421 11 101222 22222221 11111 122233335553
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEe
Q 019652 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (337)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 183 (337)
++++++..++||..|-+.|.+. +|++|++..+.+ ..+..+.. ..++||+|+||..+. +|.++.++.
T Consensus 97 -~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~-~~e~~~~~--~~~~~PvVVKP~~g~---gS~GV~~v~ 162 (887)
T PRK02186 97 -ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALAL-RAVALDAL--DGLTYPVVVKPRMGS---GSVGVRLCA 162 (887)
T ss_pred -CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHHH--HhCCCCEEEEeCCCC---CCCCeEEEC
Confidence 5789999999999999999965 899999998863 22232222 358999999998854 567899999
Q ss_pred Chhhhhcc--------CCCeEEEecccCC-eeEEEEEECCEEE--EEEEecCCCCccccccCCCceeeecCcccccccCC
Q 019652 184 DQYSLKKL--------EPPLVLQEFVNHG-VLFKVYIVGEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 252 (337)
Q Consensus 184 ~~~~L~~l--------~~p~vvQeFI~h~-~d~KV~VIG~~v~--~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~ 252 (337)
+.++|.+. +.++++||||+-. +.+-+++.++.+. ...++.... . ..|- .... ..
T Consensus 163 ~~~el~~a~~~~~~~~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~~~-~--------~~~v-e~g~-----~~ 227 (887)
T PRK02186 163 SVAEAAAHCAALRRAGTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHLGP-P--------PHFV-EIGH-----DF 227 (887)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeecCC-C--------CCeE-Eecc-----cc
Confidence 99887542 5789999999833 5555566655443 234433211 0 0010 0000 00
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 253 DADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL--~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
+..+++. ..+.+.+++.++.++||+ ..+++|+++++ + +++|||||.=+|-
T Consensus 228 P~~l~~~-----~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~G 279 (887)
T PRK02186 228 PAPLSAP-----QRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRLAG 279 (887)
T ss_pred CCCCCHH-----HHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCCCC
Confidence 1111111 135678999999999998 56889999975 2 4899999986653
No 54
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.42 E-value=1e-11 Score=136.72 Aligned_cols=176 Identities=12% Similarity=0.170 Sum_probs=118.4
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|+.++ .++++++.+.||..+.+++.++ +|++|++.. +. +.+++.+. ...++||+|+||..++ ++
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~-~~eea~~~--ae~iGyPvIVKP~~GG---GG 165 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPE-TMEEVLDF--AAAIGYPVIIKASWGG---GG 165 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHH--HHHcCCCEEEEECCCC---CC
Confidence 66666 5589999999999999999865 889988642 22 22222222 2358999999997644 47
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCCce
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAGV 238 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~g~ 238 (337)
+||.++.++++|.+. +.++++|+||..++.+.|-|+||. ++...|. |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqr------------ 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQR------------ 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccc------------
Confidence 799999999887642 457999999985588999999764 3333332 1110
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.|+... ..+....+++. ..+.+.++|.++.++||+.-+| ||++++.+ | ++|+||||.=++..
T Consensus 234 --r~qk~i--e~aPa~~L~~e-----~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 234 --RHQKVV--EVAPAPYLSRE-----VRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRIQVE 296 (1143)
T ss_pred --cCceEE--EEeCCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCCCcc
Confidence 011000 00000111111 1356789999999999987665 99999853 4 68999999988754
No 55
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.41 E-value=1.7e-11 Score=135.17 Aligned_cols=233 Identities=15% Similarity=0.245 Sum_probs=149.9
Q ss_pred cccchhHHhhhhhcceEEEEecCCCCCC------------------------CCCCceEEEEccCcHHH--HH-HHH--H
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEW--RQ-ILE--E 93 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~~~~l~------------------------~q~~fDvilhK~t~~~~--~~-~l~--~ 93 (337)
+++-...++++++.|++++.+|.+.... +...+|+|+.=+..+.. +. .+. .
T Consensus 26 d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~ 105 (1050)
T TIGR01369 26 DYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESG 105 (1050)
T ss_pred cchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHh
Confidence 3445568889999999999999875210 12367888876554322 11 111 1
Q ss_pred HHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCC
Q 019652 94 YRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (337)
Q Consensus 94 y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (337)
..++ -|+.++ .+++++..+.||..+.+.|.++ ++++|++..+++ .++..+. ...++||+|+||..+.
T Consensus 106 ~le~-~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~--~~~igyPvIVKP~~g~- 173 (1050)
T TIGR01369 106 VLEK-YGVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHS-VEEALAA--AKEIGYPVIVRPAFTL- 173 (1050)
T ss_pred HHHH-CCCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCC-HHHHHHH--HHHhCCCeEEECCCCC-
Confidence 1222 367666 7899999999999999999965 899999988863 2222222 2358999999997543
Q ss_pred CCcceeeEEEeChhhhhcc-------C--CCeEEEecccCC-eeEEEEEECC---EEEEEEEecCCCCccccccCCCcee
Q 019652 173 SAKSHELSLAYDQYSLKKL-------E--PPLVLQEFVNHG-VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 173 s~~sh~m~iv~~~~~L~~l-------~--~p~vvQeFI~h~-~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~ 239 (337)
++.|+.++.++++|... . .++++||||+ | ..+-+-|++| .+.++ .+.-++......+. +.
T Consensus 174 --gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~-G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g-~~- 246 (1050)
T TIGR01369 174 --GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA-GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTG-DS- 246 (1050)
T ss_pred --CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc-CceEEEEEEEEeCCCCEEEE--eeceeccCcceecC-ce-
Confidence 56789999999988653 1 5899999999 6 7777777744 22221 11112111000000 00
Q ss_pred eecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeEEEEEecCCCC
Q 019652 240 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~-GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
+.. + ++ .+++. ..+.++++|.++.++||+.-. .||+.++..+| ++||+|||.-++
T Consensus 247 ----i~v----~-Pa~tl~~~-----~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 247 ----IVV----A-PSQTLTDK-----EYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ----EEE----e-cCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 000 0 11 11111 124578999999999999744 59999985444 799999997665
No 56
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.41 E-value=1.5e-11 Score=123.67 Aligned_cols=235 Identities=13% Similarity=0.123 Sum_probs=138.4
Q ss_pred hhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHh
Q 019652 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~ 125 (337)
..+.+.|++.+++++.+.++.++ .......+.+. |++++ -+.++++.++||..+-++|.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l-----------------v~~~~d~l~~~--Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL-----------------VAGLADDLVKA--GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH-----------------HHHHHHHHHHC--CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 45778888888888777765432 11222233333 67766 667899999999999999986
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------------C
Q 019652 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------E 192 (337)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~ 192 (337)
+ +|++|++..+. +.+++.+.+ ..++||+|+||.. |+ ++.|+.++.+.+++.+. .
T Consensus 113 ~-------GIptp~~~~~~-~~~e~~~~~--~~~g~PvVVKp~~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFT-DPAAAKKYI--KEQGAPIVVKADG--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEEEEcCC--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 5 89999998885 222333322 3588999999874 33 57899999999776431 3
Q ss_pred CCeEEEecccCCeeEEEEEECC--EEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHH-
Q 019652 193 PPLVLQEFVNHGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL- 269 (337)
Q Consensus 193 ~p~vvQeFI~h~~d~KV~VIG~--~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~- 269 (337)
.++++||||. |.++-|.++.| .++... .+.. ...+|+++.....+. -....|.. .++ .+..
T Consensus 180 ~~vlIEefi~-G~E~Sv~~~~dG~~~~pl~----~~~d------hkr~~d~d~g~ntgg---mg~~sp~p-~l~-~~~~~ 243 (434)
T PLN02257 180 SEVVVEEFLD-GEEASFFALVDGENAIPLE----SAQD------HKRVGDGDTGPNTGG---MGAYSPAP-VLT-PELES 243 (434)
T ss_pred CeEEEEECCC-CCEEEEEEEECCCcEEEEE----eeee------cccccCCCCCCCCCC---CeeEecCC-CCC-HHHHH
Confidence 5799999998 76777766533 233111 0100 011233222221100 00001110 111 1222
Q ss_pred ---HHHHH---HHHHHhCCcEEE---EEEEEeCCCCCeEEEEEecCCCCCCC----CccchHHHHHHHHHHHHc
Q 019652 270 ---ERLAK---ELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGK----MPEYEHIFTDFLLSLTQS 330 (337)
Q Consensus 270 ---~~lA~---~l~~~LGL~l~G---vDvi~~~~tg~~~~VIDVN~fPg~~g----v~~~~~~l~~~l~~~i~~ 330 (337)
+.++. ++-++.|+.+.| +|++++..+| .++|+|+|.-||... ++-...-|.+.+...+.+
T Consensus 244 ~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 244 KVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 23332 334578888776 7988872233 589999999999641 122223455556655555
No 57
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.40 E-value=2.2e-11 Score=134.31 Aligned_cols=237 Identities=16% Similarity=0.212 Sum_probs=150.4
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCCCC------------------------CCCCceEEEEccCcHHHHH---HHHH-
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKEWRQ---ILEE- 93 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~------------------------~q~~fDvilhK~t~~~~~~---~l~~- 93 (337)
-+++-...+++.++.|++++.+|.+.... +...+|+|++=+..+.+.. .+.+
T Consensus 26 ~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~ 105 (1068)
T PRK12815 26 FDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHED 105 (1068)
T ss_pred hhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhc
Confidence 34455568888899999999999775210 1237888887655432211 1211
Q ss_pred -HHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCC
Q 019652 94 -YRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD 171 (337)
Q Consensus 94 -y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (337)
..++ -|+.++ -+++++..+.||..+.+.|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+.
T Consensus 106 g~Le~-~gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~--~~~igyPvVVKP~~g~ 174 (1068)
T PRK12815 106 GILEQ-YGVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAF--AEKIGFPIIVRPAYTL 174 (1068)
T ss_pred CHHHH-CCCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHH--HHHcCCCEEEEECcCC
Confidence 1222 367665 6789999999999999999875 899999998863 2222222 2358999999998644
Q ss_pred CCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECCE---EEEEEEecCCCCccccccCCCcee
Q 019652 172 GSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 172 Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~~---v~~~~R~Slp~~~~~~~~~~~g~~ 239 (337)
++.|+.++.++++|.+. ..++++||||+...++-|-|++|. +..+ .+.-++....+.+ |
T Consensus 175 ---gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~--~~~e~~~p~gi~t--G-- 245 (1068)
T PRK12815 175 ---GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITV--CNMENIDPVGIHT--G-- 245 (1068)
T ss_pred ---CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE--EeceecccccccC--C--
Confidence 46788899999888652 247999999983378888888652 3322 1111221111100 0
Q ss_pred eecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 240 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
+.... .++ .+++. ....++++|.++.++||+. .++||+.++..+| +++|+||| |.+.+.
T Consensus 246 --~s~~v-----~Pa~~l~~~-----~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s 306 (1068)
T PRK12815 246 --DSIVV-----APSQTLTDD-----EYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRS 306 (1068)
T ss_pred --ceEEE-----ecCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccc
Confidence 00000 011 11111 1245789999999999994 4569999986444 79999999 555443
No 58
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.40 E-value=3.4e-11 Score=120.89 Aligned_cols=178 Identities=12% Similarity=0.195 Sum_probs=112.6
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
|+.++ .++++++.++||..+.+.|.++ +|++|++.... .+..++.+.. ..++||+|+||..++ +|+
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~g~---gs~ 166 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASAGG---GGI 166 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCCCC---CCc
Confidence 66655 6689999999999999999965 78998863221 1222222222 358999999997754 577
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeee
Q 019652 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRF 241 (337)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~ 241 (337)
|+.++.+.++|.+. +.++++||||..+..+.+.|+++ ++.....+.. .+.. ........
T Consensus 167 Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~-~~~~----~~~~~~~~ 241 (450)
T PRK06111 167 GMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWEREC-SVQR----RHQKVIEE 241 (450)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecc-cccc----cccceEEe
Confidence 99999999887541 35799999998446677766643 2332211110 0000 00000000
Q ss_pred cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 242 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
.. ...+++. ..+.++++|.++.++||+. ++.+|++++.+ | ++||+|||.=|+.
T Consensus 242 -----~p----~~~~~~~-----~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~~ 295 (450)
T PRK06111 242 -----AP----SPFLDEE-----TRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQV 295 (450)
T ss_pred -----cC----CCCCCHH-----HHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcCC
Confidence 00 0001111 1356789999999999995 45599999753 4 5899999988764
No 59
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.39 E-value=2e-11 Score=121.86 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=76.2
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
|++++ .++++++.++||..+.++|.+. +|++|++..+.+ .+++.+.+ ..++||+|+||..+. +|.+
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~~~P~VvKP~~~~---gs~G 152 (420)
T PRK00885 86 GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYL--DEKGAPIVVKADGLA---AGKG 152 (420)
T ss_pred CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEeCCCC---CCCc
Confidence 77776 5678999999999999999965 899999988852 22233222 347999999997543 5678
Q ss_pred eEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEEC
Q 019652 179 LSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVG 213 (337)
Q Consensus 179 m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG 213 (337)
+.++.++++|.+. ..++++||||+ |..+-|.++.
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-G~E~sv~~~~ 199 (420)
T PRK00885 153 VVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD-GEEASFFAFV 199 (420)
T ss_pred EEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC-CcEEEEEEEE
Confidence 9999999877541 35799999998 7777777763
No 60
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.35 E-value=3.6e-11 Score=121.35 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=118.5
Q ss_pred HHHHHHhCCCcee-eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC-CChhHHHHHcCCCCcEEEeec
Q 019652 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 91 l~~y~~~~p~v~V-iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~fP~VvKp~ 168 (337)
++...+. -|+++ .=++.++..|+||..+.+++.++ +|++|++..+..+. .++........++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 3444433 36776 67788899999999999999754 89999998753221 112221222349999999998
Q ss_pred cCCCCCcceeeEEEeChhhhhcc------CCCeEEEecccCCeeEEE--EEECCE-EEEE-EEecCCCCccccccC-CCc
Q 019652 169 VADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNHGVLFKV--YIVGEA-IKVV-RRFSLPDVTKQDLST-SAG 237 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l------~~p~vvQeFI~h~~d~KV--~VIG~~-v~~~-~R~Slp~~~~~~~~~-~~g 237 (337)
. |+ .|+|+.+|.++++|..+ ...+++|+||+ ++.+-| ++.++. +... .+..++-. ++.. ..|
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~-GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr~G 262 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR-NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYRGG 262 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC-cEEEEEEEEEeCCCCEEeccccccccce---EEEEccCC
Confidence 5 33 48999999999988763 24689999997 555444 555432 3221 11111110 0000 011
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC----CcEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 238 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG----LRLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG----L~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
.+. ....++.+++.. .+.++++|.++.++|+ -.+++||++++.++| ++|++|||.=||=
T Consensus 263 ~~~--------~~i~PA~L~~ei-----~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 263 WCG--------NDIWPGALPPAQ-----TRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred eEE--------EEEccCCCCHHH-----HHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 110 000122232222 3567999999999993 455569999985344 6999999986664
No 61
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.33 E-value=6.2e-11 Score=131.03 Aligned_cols=175 Identities=15% Similarity=0.214 Sum_probs=115.2
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|+.++ .++++++.+.||..+.+++.++ +|++|++.. +. +.+++.+. ...++||+|+||..++ ++
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~Gg---GG 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALEF--AEEIGYPIMLKASAGG---GG 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCC---CC
Confidence 66654 6789999999999999999865 788866543 33 22222222 2358999999998754 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE---EE-EEEEe-cCCCCccccccCCCce
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAGV 238 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~---v~-~~~R~-Slp~~~~~~~~~~~g~ 238 (337)
+||.++.++++|... +.++++|+||.....+.|-|+|+. +. ...|. |.. ..
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvq--------rr--- 238 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQ--------RR--- 238 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEcccccee--------ec---
Confidence 899999999887642 467999999985577888777642 22 22221 110 00
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCC
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
|+... ..+....+++. ..+.+.++|.++.+++|+.-.| +|++++.+ | ++|+||||.-++.
T Consensus 239 ---~qk~i--e~aP~~~L~~~-----~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqv 299 (1146)
T PRK12999 239 ---HQKVV--EIAPAPGLSEE-----LRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQV 299 (1146)
T ss_pred ---CccEE--EEcCCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCC
Confidence 00000 00000011111 1356789999999999998766 99999863 4 5999999987764
No 62
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.32 E-value=6.9e-11 Score=118.53 Aligned_cols=138 Identities=14% Similarity=0.245 Sum_probs=94.5
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChH-HHHHHhccHHHHHHH
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQC 122 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~-~ai~~~~dR~~~~~~ 122 (337)
.....+.+.|++.+++++.+.++.++ .+.+.+..++ -|++++-|. .+.+.+.||..+-+.
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~ 115 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSL 115 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHH
Confidence 34445677777777777776665432 2333222222 277877554 467788999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-----------
Q 019652 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------- 191 (337)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l----------- 191 (337)
|.++ +|++|++..+. +.+++.+.+ ..++||+|+||... ++|.|+.++.+.+++.+.
T Consensus 116 l~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp~~~---~~gkGV~vv~~~eel~~a~~~~~~~~~~g 182 (426)
T PRK13789 116 MKEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKADGL---AAGKGVTVATEKKMAKRALKEIFKDKKFG 182 (426)
T ss_pred HHHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEeCCC---CCCCcEEEECCHHHHHHHHHHHHhhcccc
Confidence 9965 89999998775 222233322 24799999998642 357899999999876541
Q ss_pred --CCCeEEEecccCCeeEEEEEECC
Q 019652 192 --EPPLVLQEFVNHGVLFKVYIVGE 214 (337)
Q Consensus 192 --~~p~vvQeFI~h~~d~KV~VIG~ 214 (337)
...+|+||||. |.++-|.++.+
T Consensus 183 ~~~~~vlIEEfl~-G~E~Sv~~~~d 206 (426)
T PRK13789 183 QSGNQVVIEEFME-GQEASIFAISD 206 (426)
T ss_pred CCCCeEEEEECcC-CeEEEEEEEEC
Confidence 13699999998 77888877753
No 63
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.29 E-value=2.1e-11 Score=106.45 Aligned_cols=149 Identities=22% Similarity=0.361 Sum_probs=75.8
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-
Q 019652 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL- 191 (337)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l- 191 (337)
|.||+++++.|.++ +|++|.+...... ....+|+|+||..++ ++.++.++.+.+.+...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~~----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSEP----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EES----------S--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCccccccc----------cccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 68999999999965 7899954433211 124789999998865 56689999999887753
Q ss_pred CCCeEEEecccCCeeEEEEEECCE----EEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChH
Q 019652 192 EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRP 267 (337)
Q Consensus 192 ~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~ 267 (337)
....++||||. |..+-+.++.+. +..+.|..+..- ...|.|. ++ .. +. ..+..+
T Consensus 61 ~~~~i~Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~--------~~~~~~~----G~-~~-~~-------~~~~~~ 118 (161)
T PF02655_consen 61 NKLRIVQEFIE-GEPYSVSFLASGGGARLLGVNRQLIGND--------DGRFRYC----GG-IV-PA-------DTPLKE 118 (161)
T ss_dssp ----EEEE----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE----EE-EE-S-----------HHH
T ss_pred ccceEEeeeeC-CEEeEEEEEEeCCceEEEEechHhhccc--------cceeeec----cc-cc-cc-------CCchHH
Confidence 33349999998 877778777432 334455443210 0012211 10 00 11 112246
Q ss_pred HHHHHHHHHHHHh-CCc-EEEEEEEEeCCCCCeEEEEEecC
Q 019652 268 LLERLAKELRRQL-GLR-LFNLDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 268 ~~~~lA~~l~~~L-GL~-l~GvDvi~~~~tg~~~~VIDVN~ 306 (337)
.+.++|.+++++| ||. ++|||+|.++ + ++||||||.
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINP 156 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINP 156 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcC
Confidence 7899999999999 875 5589999976 2 589999995
No 64
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.26 E-value=4.9e-10 Score=111.77 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=109.5
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCc-EEEeeccCCCCCcce
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSH 177 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~Gs~~sh 177 (337)
+++++ .++++++.++||..+.+.|.++ +|++|++..+.+ .+++.+.+ ..++|| +|+||..+. +|.
T Consensus 88 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~~~~---gg~ 154 (423)
T TIGR00877 88 GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKADGLA---AGK 154 (423)
T ss_pred CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEECCCC---CCC
Confidence 66665 6788999999999999999865 899999998863 22233322 358999 999996643 567
Q ss_pred eeEEEeChhhhhcc------------CCCeEEEecccCCeeEEEEEE--CCEEEEE--EEecCCCCccccccCCCceeee
Q 019652 178 ELSLAYDQYSLKKL------------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRF 241 (337)
Q Consensus 178 ~m~iv~~~~~L~~l------------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~R~Slp~~~~~~~~~~~g~~~~ 241 (337)
++.++.+.+++.+. ..++++||||+ |..+-|.++ |+.+.+. .|.--+... ++ .+.
T Consensus 155 Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dg~~~~~~~~~~~~~~~~~-~~----~~~--- 225 (423)
T TIGR00877 155 GVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD-GEEVSLLAFVDGKTVIPMPPAQDHKRALE-GD----KGP--- 225 (423)
T ss_pred CEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc-CceEEEEEEEcCCeEEeceeeeeeeeccc-CC----CCC---
Confidence 89999999876541 24799999998 667776666 5544432 111000000 00 000
Q ss_pred cCcccccccCCCCCCCccccCCCC---hHHHHHHHHHHHHHh---CC---cEEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 242 PRVSCAAASADDADLDPCVAELPP---RPLLERLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~l~~~L---GL---~l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
+..+ .....|.. .++. .+..++++..+.++| |+ .++.+|++++++ | ++|+|||.=||-.
T Consensus 226 ~~g~-------~~~~~p~~-~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~-g--~~viEin~R~g~~ 293 (423)
T TIGR00877 226 NTGG-------MGAYSPAP-VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE-G--PKVLEFNCRFGDP 293 (423)
T ss_pred CCCC-------CceecCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC-C--cEEEEEEccCCCc
Confidence 0000 00011110 1111 122345555566665 33 556799999753 3 8999999999843
No 65
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.25 E-value=6.4e-10 Score=123.70 Aligned_cols=176 Identities=16% Similarity=0.220 Sum_probs=116.0
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCc-EEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~-~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
|+.++ .++++++.+.||..+-+++.++ +|++|+ +.++. +.+++... ...++||+|+||..++ ++.
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~gg---GG~ 164 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGG---GGI 164 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCC---CCC
Confidence 66544 5689999999999999999865 789755 55554 22222222 2458999999997754 467
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEe-cCCCCccccccCCCcee
Q 019652 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~-Slp~~~~~~~~~~~g~~ 239 (337)
||.++.++++|... +.++++||||..++.+-|.|++| ++... .|. +... .. ..
T Consensus 165 GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr--------~~-~k 235 (1201)
T TIGR02712 165 GMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQR--------RN-QK 235 (1201)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEe--------cC-cc
Confidence 99999999887631 35799999999668888888864 33322 221 1100 00 00
Q ss_pred eecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
. +.. .+. .+++. ..+.+.++|.++.++||+.-++ +|++++..+| ++||+|||.=++-.
T Consensus 236 ~---vee-----~Pap~l~~~-----~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 236 V---VEE-----TPAPNLPPE-----TRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred E---EEE-----cCCCCCCHH-----HHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 0 000 000 11111 1346789999999999987554 9999986444 69999999877543
No 66
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.19 E-value=2.5e-09 Score=103.64 Aligned_cols=185 Identities=20% Similarity=0.301 Sum_probs=129.8
Q ss_pred CceEEEEccCcHHHHHHHHHHHHhCCCceee--ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 74 PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL--DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 74 ~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi--Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
..|+++++.+.+...++-.+|.+. |+.|+ -+.+++..+.||+.+++.+.+ .+|++|++..++ +.+++.
T Consensus 66 ~Idv~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~-t~~el~ 135 (329)
T PF15632_consen 66 GIDVFVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVR-TADELK 135 (329)
T ss_pred CCeEEEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeC-CHHHHH
Confidence 445666666666556777888888 66555 458999999999999999986 389999999986 223333
Q ss_pred HHHHHcCCCCc---EEEeeccCCCCCcceeeEEEe-Chhhhhcc----------------------CCCeEEEecccCCe
Q 019652 152 DVVLKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKKL----------------------EPPLVLQEFVNHGV 205 (337)
Q Consensus 152 ~~l~~~~l~fP---~VvKp~~a~Gs~~sh~m~iv~-~~~~L~~l----------------------~~p~vvQeFI~h~~ 205 (337)
.+. +.+++| +.+||..+. ++.|..++. +.+.+..+ -+|++++||++ |.
T Consensus 136 ~a~--~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~ 209 (329)
T PF15632_consen 136 AAY--EELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP-GP 209 (329)
T ss_pred HHH--HhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC-CC
Confidence 322 335565 999999865 456777877 33443322 46899999999 76
Q ss_pred eEEEEEE--CCEEE-EEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 019652 206 LFKVYIV--GEAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 282 (337)
Q Consensus 206 d~KV~VI--G~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL 282 (337)
+|-|=|+ ++++. ++-|+-.. . ...+ -..+.+.++|.++++.+||
T Consensus 210 EySVD~l~~~G~viaaV~R~K~G-----~---------------------~q~l-------~~~~~l~e~a~~l~~~~~l 256 (329)
T PF15632_consen 210 EYSVDCLADEGRVIAAVPRRKLG-----R---------------------RQVL-------ENDEELIELARRLAEAFGL 256 (329)
T ss_pred eEEEEEEecCCEEEEEEEEEecC-----c---------------------eeEE-------EECHHHHHHHHHHHHHhCC
Confidence 6666555 56666 55665431 0 0000 0124569999999999999
Q ss_pred c-EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 283 R-LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 283 ~-l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
+ +++|++..|. +| .++++|||.=|+
T Consensus 257 ~g~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 257 DGLFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred CceEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 7 4589999875 35 689999998776
No 67
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.17 E-value=3.6e-09 Score=106.45 Aligned_cols=217 Identities=10% Similarity=0.062 Sum_probs=127.4
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L 123 (337)
..+.+.+.|++.+++++..-++.+| ......+|.+. |++++ .+.++++.+.||..|.+.|
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHH
Confidence 3456777888888777776654432 12334455555 78876 8899999999999999999
Q ss_pred HhccccCCCCCccCCc-EEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh----hh-hh------cc
Q 019652 124 ADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ----YS-LK------KL 191 (337)
Q Consensus 124 ~~~~l~~~~~~I~~P~-~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~----~~-L~------~l 191 (337)
.++ +|++|+ +....+. .+.... ...++||+|+||.... +|.||.++.+. ++ +. +.
T Consensus 114 ~~~-------gIptp~~~~~~~~~-~e~~~~--~~~~~~PvVVKP~~~s---ggkGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ERH-------NIPGNINFNACFSE-KDAARD--YITSMKDVAVKPIGLT---GGKGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHC-------CcCCCcccceeCCh-HHHHHH--HHhhCCCEEEEeCCCC---CCCCeEEecCchhhHHHHHHHHHHHhCC
Confidence 864 899974 4344322 222221 2346899999986533 66789888532 22 22 12
Q ss_pred CCCeEEEecccCC--eeEEEEEECCEEEEE--EEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCC--
Q 019652 192 EPPLVLQEFVNHG--VLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP-- 265 (337)
Q Consensus 192 ~~p~vvQeFI~h~--~d~KV~VIG~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~-- 265 (337)
..++|+|||+. | +.+=+++=|+.++.. .+. .+....++. |+ +.... ++.+ +....+. .+++
T Consensus 181 ~~~viIEEfl~-G~E~Svd~~~dg~~~~~l~~~~d-~~r~~~~d~----gp---~tGgm-G~~s-~~~~~~p--~l~~~~ 247 (435)
T PRK06395 181 DGVVLIEKKMT-GEEFSLQAFSDGKHLSFMPIVQD-YKRAYEGDH----GP---NTGGM-GSIS-DRDFSLP--FLSKDA 247 (435)
T ss_pred CCcEEEEeecC-CceEEEEEEEcCCeEEEecccce-eeecccCCC----CC---ccCCC-cccc-CCCCCCC--CCCHHH
Confidence 46799999997 6 555556657776532 100 000000000 00 00000 0111 0000000 0111
Q ss_pred hHHHHHHHHHHHHHhCC------cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 266 RPLLERLAKELRRQLGL------RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 266 ~~~~~~lA~~l~~~LGL------~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.+.+.+++.++.++||. .+..+++++.+ . .++|||+|.=+|
T Consensus 248 ~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~--gp~ViE~n~R~g 294 (435)
T PRK06395 248 PERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-N--GVKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-C--CcEEEEEeCCCC
Confidence 24568899999999994 45579999864 2 489999998777
No 68
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.06 E-value=2.9e-09 Score=106.93 Aligned_cols=176 Identities=16% Similarity=0.248 Sum_probs=114.9
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEe-cCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
.++..+-| +++++++.||+.+-+++.+. +||+|+...-- .+.++.... ...++||||+||..+. ++
T Consensus 98 ~gl~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~~--a~~iGyPVivKa~~Gg---Gg 165 (449)
T COG0439 98 AGLTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALAI--AEEIGYPVIVKAAAGG---GG 165 (449)
T ss_pred cCCeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHHH--HHHcCCCEEEEECCCC---Cc
Confidence 46888877 46788888999999999865 78888865110 011122222 2357899999986654 56
Q ss_pred eeeEEEeChhhhhcc------------CCC-eEEEecccCCeeEEEEEECCEE----EEEEEe-cCCCCccccccCCCce
Q 019652 177 HELSLAYDQYSLKKL------------EPP-LVLQEFVNHGVLFKVYIVGEAI----KVVRRF-SLPDVTKQDLSTSAGV 238 (337)
Q Consensus 177 h~m~iv~~~~~L~~l------------~~p-~vvQeFI~h~~d~KV~VIG~~v----~~~~R~-Slp~~~~~~~~~~~g~ 238 (337)
.||.+|.++++|.+. ..| +++|+||...+-+=+-|+||.. ....|- |+.- .
T Consensus 166 ~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqr--------r--- 234 (449)
T COG0439 166 RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQR--------R--- 234 (449)
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcC--------C---
Confidence 799999999988752 344 9999999966777888888764 233554 3321 0
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
+..+. ..+....++++. .+.+-+.|+++++.+|-.-+| +.++.+. +| ++|++|+|.==+
T Consensus 235 --~qkvi---eeapsp~~~~e~-----r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlq 294 (449)
T COG0439 235 --HQKVI---EEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQ 294 (449)
T ss_pred --cccee---eecCCCCCCHHH-----HHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccc
Confidence 00000 000000111111 245667888999998888888 9999986 44 689999996433
No 69
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.04 E-value=6.7e-09 Score=101.80 Aligned_cols=225 Identities=18% Similarity=0.267 Sum_probs=137.5
Q ss_pred hhhhcceEEEEecCCC-CCCC-----------------------CCCceEEEEccCcHHHH---HHHHH-HH-HhCCCce
Q 019652 52 LARNKGILFVAIDQNR-PLSD-----------------------QGPFDIVLHKLTGKEWR---QILEE-YR-QTHPEVT 102 (337)
Q Consensus 52 ~a~~~Gi~~v~iD~~~-~l~~-----------------------q~~fDvilhK~t~~~~~---~~l~~-y~-~~~p~v~ 102 (337)
+-++.|+.++.|+.+- ++.. +...|+|++=+..+... -.+.+ .. +++-==+
T Consensus 24 aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~v 103 (400)
T COG0458 24 ALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEV 103 (400)
T ss_pred HHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEE
Confidence 4466789999998874 1211 12668888887764221 12221 11 1222235
Q ss_pred eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEE
Q 019652 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (337)
Q Consensus 103 ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv 182 (337)
|.-++++|+.+.||++..+.+.++ ++++|.. +.+ ..++..+ ....++||+|+||..+- ++.|-.++
T Consensus 104 vgs~~eaI~iaeDr~~fke~m~ei-------gi~~P~~-~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i~ 169 (400)
T COG0458 104 VGSDPEAIEIAEDKKLFKEAMREI-------GIPVPSR-IAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGIA 169 (400)
T ss_pred EecCHHHhhhhhhHHHHHHHHHHc-------CCCCCcc-ccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeEE
Confidence 779999999999999999999976 7899933 222 1112222 23458999999997754 44578899
Q ss_pred eChhhhhcc---------CCCeEEEecccCCeeEEEEEECC----EEEEEEEecCCCCccccccCCCceeeecCcccccc
Q 019652 183 YDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 249 (337)
Q Consensus 183 ~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~----~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~ 249 (337)
+|+++|..+ ..+++++|+|.....+..-|+-| -+++.. ..|+.+.++++.+.... +.+
T Consensus 170 ~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~---men~dp~gvhtgdsi~v------apa 240 (400)
T COG0458 170 YNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCN---MENLDPMGVHTGDSITV------APA 240 (400)
T ss_pred eCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCCEEEEEe---CCccccccccccceeee------ccc
Confidence 999998763 35789999999446777666632 222222 23333222222211110 000
Q ss_pred cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-EEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 250 SADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 250 ~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l-~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.+..+ .....++..+.++.+.||..= ..|++.+++++| ++||||||.=+|
T Consensus 241 ---qtl~d------~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 241 ---QTLTD------KEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred ---ccccc------HHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 00000 012345668999999999981 129999988766 899999996554
No 70
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.04 E-value=7.1e-09 Score=92.35 Aligned_cols=185 Identities=14% Similarity=0.198 Sum_probs=105.3
Q ss_pred ChHHHHHHhccHH----HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeE
Q 019652 105 DPPYAIQHLHNRQ----SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (337)
Q Consensus 105 Dp~~ai~~~~dR~----~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (337)
|++.|+..+.||- .+.++-.+++ ...+|.=.+.... +-.++ ...-.||+|+| +|++- .+-|=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG----~e~FPLieQt~yp-nh~em-----~s~~~fPvVvK--vG~~h-~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLG----PEKFPLIEQTYYP-NHREM-----LSAPRFPVVVK--VGHAH-AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHH----TTTS-B---EEES-SGGGG-----CS-SSSSEEEE--ESS-S-TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhC----CcccccceeeecC-Chhhh-----ccCCCCCEEEE--Ecccc-CceeEE
Confidence 6899999999984 2333333332 1234433333331 11111 12358999999 66544 233445
Q ss_pred EEeChhhhhcc-------CCCeEEEecccCCeeEEEEEECCEEEEEEEecC-CCCccccccCCCceeeecCcccccccCC
Q 019652 181 LAYDQYSLKKL-------EPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSL-PDVTKQDLSTSAGVFRFPRVSCAAASAD 252 (337)
Q Consensus 181 iv~~~~~L~~l-------~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Sl-p~~~~~~~~~~~g~~~~~~~s~~~~~~~ 252 (337)
.|.|...+.++ +.=+-++-||+-..|++|--||+++.+++|+|+ .| |+++.|.--+
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId~kyDirvqkIG~~ykA~~R~sis~n-----WK~N~gsa~l----------- 131 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFIDAKYDIRVQKIGNNYKAYMRTSISGN-----WKANTGSAML----------- 131 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE---EEEEEEEEEETTEEEEEEEEESSST-----SSTTSSSEEE-----------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeeccccceeEEEEEEEcCeEEEEEEcccccc-----ccccccchhe-----------
Confidence 88999777753 555688999985599999999999999999997 34 5544331111
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeEEEEEecCC-CCCC--CCccchHHHHHHHHHHH
Q 019652 253 DADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF-PGYG--KMPEYEHIFTDFLLSLT 328 (337)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~~~~tg~~~~VIDVN~f-Pg~~--gv~~~~~~l~~~l~~~i 328 (337)
.+.+..+..+.-+.++.+.+ ||+++++|+|... +| +.||+|||.. -++- ..++=...+.|.+..++
T Consensus 132 --------Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km 201 (203)
T PF02750_consen 132 --------EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKM 201 (203)
T ss_dssp --------EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-TT----GGGHHHHHHHHHHHHHHHH
T ss_pred --------eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCCcccccchhHHHHHHHHHHHHHHHh
Confidence 12222355577888999999 9999999999986 56 6799999976 2222 22222345555554443
No 71
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.03 E-value=2.2e-08 Score=94.91 Aligned_cols=227 Identities=16% Similarity=0.228 Sum_probs=142.7
Q ss_pred hHHhhhhhcceEEEEecCCC--CCCCC---------------------CCceEEEEccCcHHHHHHHHHHHHhCCCceee
Q 019652 48 KLEGLARNKGILFVAIDQNR--PLSDQ---------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~--~l~~q---------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi 104 (337)
++.-.|...|++++.+|.=. |-..- -..|.|++-+. .+....|.+++++ |.-||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiE-AI~td~L~elE~~--G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIE-AIATDALVELEEE--GYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhh-hhhHHHHHHHHhC--CceEc
Confidence 45556788999999999732 21111 13444443321 1233567777776 88899
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
=...+.+.++||..+-++.++- -++|+-++...++ .+++.+ ....++||+|+||+.. +-.||=+++.+
T Consensus 103 P~ArAt~ltMnRegiRrlAAee------LglpTs~Y~fa~s-~~e~~~--a~~~iGfPcvvKPvMS---SSGkGqsvv~~ 170 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEE------LGLPTSKYRFADS-LEELRA--AVEKIGFPCVVKPVMS---SSGKGQSVVRS 170 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHH------hCCCCcccccccc-HHHHHH--HHHHcCCCeecccccc---cCCCCceeecC
Confidence 9999999999999866665541 1677777766642 222322 2346999999999983 34789999999
Q ss_pred hhhhhcc-----------CCCeEEEecccCCeeEEEEEE----CCEEEEEEEecCCCCccccccCCCceeeecCcccccc
Q 019652 185 QYSLKKL-----------EPPLVLQEFVNHGVLFKVYIV----GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 249 (337)
Q Consensus 185 ~~~L~~l-----------~~p~vvQeFI~h~~d~KV~VI----G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~ 249 (337)
++.+... +.-+++++||+-++++....+ |.+-+|. | .+ -...+|.| +. |.
T Consensus 171 ~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~-----P---IG-Hrq~dgdY--~E-SW--- 235 (394)
T COG0027 171 PEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCA-----P---IG-HRQEDGDY--RE-SW--- 235 (394)
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCC-----C---cc-cccCCCCh--hc-cc---
Confidence 9888653 667999999996666665555 1111211 0 00 00011111 00 00
Q ss_pred cCCCCCCCccccCCCChHHHHHHHHHHHHHhC-CcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc
Q 019652 250 SADDADLDPCVAELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 250 ~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG-L~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
++..+++. ..+.-+.+|+++.++|| ..+|||.+.+. |++.++-||---|.=.|+-
T Consensus 236 --QP~~mS~~-----al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmV 291 (394)
T COG0027 236 --QPQEMSEA-----ALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMV 291 (394)
T ss_pred --CccccCHH-----HHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceE
Confidence 11111110 12345789999999995 79999999975 5689999999999866653
No 72
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.00 E-value=4e-09 Score=96.38 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=99.5
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH-HcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc--
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~-~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 191 (337)
||....+++.++ ++++|+....- ..+..+.+. ..+++||+++||..+. ++.+|.+++++++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~--~~~~eea~~~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVP--ISSVEEALEFAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSS--BSSHHHHHHHHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCC--CCCHHHHHHHHHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 678888888876 78888776441 012222222 2348999999987754 56799999999988752
Q ss_pred -----------CCCeEEEecccCCeeEEEEEECCE----EEEEEEec-CCCCccccccCCCceeeecCcccccccCCCCC
Q 019652 192 -----------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRFS-LPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 255 (337)
Q Consensus 192 -----------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~S-lp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~ 255 (337)
+.++++++|+...+.+-|=|++|. ++...|.. .+- ..++ .. . .+....
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~d------si-----~----~~P~~~ 132 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQR-HSQD------SI-----E----EAPAQT 132 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEE------EE-----E----EES-SS
T ss_pred hccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecccccc-cccc------ce-----e----Eeeccc
Confidence 689999999994488888888652 33334442 211 1111 00 0 000112
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 256 LDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 256 ~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
+++.. .+.++++|.++++.+|+.=.| |=++++..++ ++||+|||..-+
T Consensus 133 L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 133 LSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp S-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred cchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 22111 356789999999999998776 9999996445 899999998766
No 73
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.99 E-value=1.5e-08 Score=95.44 Aligned_cols=189 Identities=15% Similarity=0.254 Sum_probs=113.1
Q ss_pred HHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCC
Q 019652 95 RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (337)
Q Consensus 95 ~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (337)
.+++++++++|| ...||+.+++.|.+.. .-.=-.|.|..+. +.+++.+.|...+ -+++||..++
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~Gs--- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDNGS--- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCCCC---
Confidence 356689999998 4689999999998631 0122489998885 2234555555444 7899998854
Q ss_pred cceeeEEEeCh----------------------hhhhc-----c-CCCeEEEeccc----CC--eeEEEEEEC---CEEE
Q 019652 175 KSHELSLAYDQ----------------------YSLKK-----L-EPPLVLQEFVN----HG--VLFKVYIVG---EAIK 217 (337)
Q Consensus 175 ~sh~m~iv~~~----------------------~~L~~-----l-~~p~vvQeFI~----h~--~d~KV~VIG---~~v~ 217 (337)
.+.|+..|... ++|.. + +.++|+|+.|+ +| +|+||.|-- +.|.
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 33333333222 11111 1 55899999995 45 999999992 3455
Q ss_pred E---EEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCC----CCh----HHHHHHHHHHHHHhCC--cE
Q 019652 218 V---VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAEL----PPR----PLLERLAKELRRQLGL--RL 284 (337)
Q Consensus 218 ~---~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~----p~~----~~~~~lA~~l~~~LGL--~l 284 (337)
+ +.|.+.++- +.+ | ++.++... .+++..... ... +....+|..+.+.+|. .-
T Consensus 147 vtg~~~Rva~~~~----ivT-----N---~~~GG~~~---~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gE 211 (262)
T PF14398_consen 147 VTGIVARVAKPGS----IVT-----N---LSQGGTAL---PFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGE 211 (262)
T ss_pred EEEEEEEEcCCCC----cee-----c---cCCCceec---CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Confidence 3 467665431 111 1 11111100 000000000 001 2334556666667774 66
Q ss_pred EEEEEEEeCCCCCeEEEEEecCCCCCCCCccc
Q 019652 285 FNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 316 (337)
Q Consensus 285 ~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~ 316 (337)
+|+|+.+|. +| ++++||||.-||-....+.
T Consensus 212 lGiDl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 212 LGIDLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 799999996 46 7999999999997766664
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.95 E-value=1.3e-07 Score=96.58 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=90.6
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~ 124 (337)
...+.+.|++.+++++.+.++.++ .+.+....++ -|++++ .+.++.+.++||..|-+.|.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~l------------------~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEPL------------------FAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchHH------------------HHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 345788888888887777654422 1223222222 377765 78889999999999999998
Q ss_pred hccccCCCCCccCC-cEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh---------h----hc
Q 019652 125 DMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----KK 190 (337)
Q Consensus 125 ~~~l~~~~~~I~~P-~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~---------L----~~ 190 (337)
++ +|++| ++..+. +.+++.+.+ + ..+|+|+||... ++|.||.++.+.++ + .+
T Consensus 119 ~~-------gIpt~~~~~~~~-~~~ea~~~~-~--~~~PvVVKP~~~---aggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 KY-------SIPGRLRYKVFY-DVEEAAKFI-E--YGGSVAIKPARQ---AGGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred Hc-------CcCCCccceEeC-CHHHHHHHH-h--hcCCEEEeeCCC---CCCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 64 89986 676664 322233322 2 236999998553 36789999998652 1 11
Q ss_pred ----------cCCCeEEEecccCCeeEEEEEE--CCEEE
Q 019652 191 ----------LEPPLVLQEFVNHGVLFKVYIV--GEAIK 217 (337)
Q Consensus 191 ----------l~~p~vvQeFI~h~~d~KV~VI--G~~v~ 217 (337)
.+.++|+||||. |..+-|.++ |+.++
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~-G~E~SV~al~dG~~~~ 222 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD-GVEYTLQVLTDGETVI 222 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC-CeEEEEEEEECCCeEE
Confidence 135799999999 766666666 44443
No 75
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.88 E-value=1.4e-08 Score=90.02 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=70.8
Q ss_pred cCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh-hhhh-------c-cCCCeEEEecccCC--
Q 019652 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSLK-------K-LEPPLVLQEFVNHG-- 204 (337)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L~-------~-l~~p~vvQeFI~h~-- 204 (337)
.+|+|++.. +...+.+.+.+.+ -+|+||+.+.| +.++..+... ..+. . ...|+++|+|++.-
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~---~~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG---DIVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS---SEEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC---CEEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 469998885 4444555555554 39999999764 4567766663 1122 1 25689999999844
Q ss_pred eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---C
Q 019652 205 VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---G 281 (337)
Q Consensus 205 ~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L---G 281 (337)
=|.|+.+++++...+.+|-. . .+++..+ ...++ .. ...+++ +...++|.++...| |
T Consensus 84 GDkRii~~nG~~~~av~R~P-~--~gd~R~N--------~~~Gg------~~--~~~~lt--~~e~~i~~~i~~~L~~~G 142 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIP-A--KGDFRSN--------LAAGG------SA--EPAELT--EREREICEQIGPKLREDG 142 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE-----SS-S-----------GGGTS------CE--EEEE----HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCEEhHHeecCC-C--CCCceee--------eccCC------ce--eecCCC--HHHHHHHHHHHHHHhhcC
Confidence 59999999999886544422 1 1122211 11111 10 011222 33366776666665 8
Q ss_pred CcEEEEEEEEeCCCCCeEEEEEecCC
Q 019652 282 LRLFNLDIIREHGTRDQFYVIDINYF 307 (337)
Q Consensus 282 L~l~GvDvi~~~~tg~~~~VIDVN~f 307 (337)
+-++|+|+| |+ ++.|||.+
T Consensus 143 l~f~GiDvi-----g~--~l~EiNvt 161 (173)
T PF02955_consen 143 LLFVGIDVI-----GD--KLTEINVT 161 (173)
T ss_dssp --EEEEEEE-----TT--EEEEEE-S
T ss_pred cEEEEEecc-----cc--ceEEEecc
Confidence 999999999 32 68999975
No 76
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.78 E-value=5.4e-08 Score=86.23 Aligned_cols=151 Identities=16% Similarity=0.240 Sum_probs=93.3
Q ss_pred CccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCeeEE
Q 019652 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGVLFK 208 (337)
Q Consensus 134 ~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~~d~K 208 (337)
+|++|+|..+.+ .+++...+. .++||+|+|+... |. ..+|..++.+++++.+. ..++++++||+..+++-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~~--~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~EiS 79 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAAE--SIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDREIS 79 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHHH--HHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEEEE
Confidence 899999999963 334444333 4899999998773 33 58899999999888763 78999999999779999
Q ss_pred EEEECC---EEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cE
Q 019652 209 VYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RL 284 (337)
Q Consensus 209 V~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l 284 (337)
|.|+.+ ++.++ +..-|.. .++++..+ ..++.+++.+ .+..+++|.++.+.|+. .+
T Consensus 80 vivaR~~~G~~~~y--p~~en~~------~~~il~~s--------~~Pa~i~~~~-----~~~a~~ia~~i~~~l~~vGv 138 (172)
T PF02222_consen 80 VIVARDQDGEIRFY--PPVENVH------RDGILHES--------IAPARISDEV-----EEEAKEIARKIAEALDYVGV 138 (172)
T ss_dssp EEEEEETTSEEEEE--EEEEEEE------ETTEEEEE--------EESCSS-HHH-----HHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEEcCCCCEEEE--cCceEEE------ECCEEEEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCcEEE
Confidence 888832 22221 1101111 11222211 0123333222 35678999999999974 67
Q ss_pred EEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 285 FNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 285 ~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
|+|.+.+.. +|++.||-||-.=|.-.
T Consensus 139 ~~VE~Fv~~-~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 139 LAVEFFVTK-DGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp EEEEEEEET-TSTEEEEEEEESS--GG
T ss_pred EEEEEEEec-CCCEEEEEeccCCccCc
Confidence 789999985 46458999997655433
No 77
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.73 E-value=4.4e-07 Score=83.97 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=90.7
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh
Q 019652 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (337)
Q Consensus 106 p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (337)
+++||+.|-||+.++..|.. .+++|.|...- ...--+|+||..+||+. ++...-+.
T Consensus 105 S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-------------~~~~k~ViKp~dgCgge---~i~~~~~~ 160 (307)
T COG1821 105 SPRAIRVAADKRLTYKALRD--------AVKQPPTREWA-------------EEPKKYVIKPADGCGGE---GILFGRDF 160 (307)
T ss_pred CHHHHhHhhhHHHHHHHHhh--------hccCCCccccc-------------cCCceEEecccccCCcc---eeeccCCC
Confidence 57999999999999999984 37888876431 12236899999998763 33332222
Q ss_pred hhhhccCCCeEEEecccCC-eeEEEEEECCEEEEE--EEecCCCCccccccCCCceee-ecCcccccccCCCCCCCcccc
Q 019652 186 YSLKKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFR-FPRVSCAAASADDADLDPCVA 261 (337)
Q Consensus 186 ~~L~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~--~R~Slp~~~~~~~~~~~g~~~-~~~~s~~~~~~~~~~~~~~~~ 261 (337)
.. -+++||||+-. .-.- ..+|+++..- .|. .-.|. +.-.+.++ .+..+
T Consensus 161 pd------~~i~qEfIeG~~lSVS-L~~GEkv~pLsvNrQ-------------fi~~~~~~~~y~gg----~~pi~---- 212 (307)
T COG1821 161 PD------IEIAQEFIEGEHLSVS-LSVGEKVLPLSVNRQ-------------FIIFAGSELVYNGG----RTPID---- 212 (307)
T ss_pred cc------hhhHHHhcCCcceEEE-EecCCccccceechh-------------hhhhccceeeeccC----cCCCC----
Confidence 22 29999999822 3222 5668865521 111 00111 11111111 11111
Q ss_pred CCCChHHHHHHHHHHHHHhC-C-cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 262 ELPPRPLLERLAKELRRQLG-L-RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 262 ~~p~~~~~~~lA~~l~~~LG-L-~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.+..+...+.|.++.+.++ | .++|||++..+ .|||||||.=|-
T Consensus 213 -he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~T 257 (307)
T COG1821 213 -HELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRPT 257 (307)
T ss_pred -cHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCCC
Confidence 1123456788888888887 4 56799999863 489999998876
No 78
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.8e-06 Score=84.14 Aligned_cols=222 Identities=18% Similarity=0.189 Sum_probs=140.3
Q ss_pred HHhhhhhcceEEEEecCCCCCCC-CCCceEEEEccCcHH------------------H-HHHHHHHHHhCCCceeeChHH
Q 019652 49 LEGLARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGKE------------------W-RQILEEYRQTHPEVTVLDPPY 108 (337)
Q Consensus 49 l~~~a~~~Gi~~v~iD~~~~l~~-q~~fDvilhK~t~~~------------------~-~~~l~~y~~~~p~v~ViDp~~ 108 (337)
+..+|...|+.+..+|++..=+- |--=+.|..-.+|.. + ...| ++.+.+ +.|-=+++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL-~~l~~~--~~v~p~~~ 92 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEAL-EKLAAS--VKVFPSPD 92 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHH-HHHHhh--cCcCCCHH
Confidence 45578889999999999763332 211223333322221 0 1222 233332 66777899
Q ss_pred HHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhh
Q 019652 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (337)
Q Consensus 109 ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 188 (337)
+++...||+..-+.|.++ ++++|+|..+++ .+++...+. .++||.|+|...+ |= +++|-.++.+++++
T Consensus 93 ~l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~~-~~el~~~~~--~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~ 160 (375)
T COG0026 93 ALRIAQDRLVEKQFLDKA-------GLPVAPFQVVDS-AEELDAAAA--DLGFPAVLKTRRG-GY-DGKGQWRIRSDADL 160 (375)
T ss_pred HHHHHhhHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHHH--HcCCceEEEeccc-cc-cCCCeEEeeCcccc
Confidence 999999999999999865 899999999973 334554444 4789999997763 33 68899999988665
Q ss_pred hc-------cCCCeEEEecccCCeeEEEEEEC---CEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCc
Q 019652 189 KK-------LEPPLVLQEFVNHGVLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 258 (337)
Q Consensus 189 ~~-------l~~p~vvQeFI~h~~d~KV~VIG---~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~ 258 (337)
.. ...| |+++||+-.+++-|.+.. +.+.++ +-.-|+. .+|++.++- -++.+++
T Consensus 161 ~~~~~~~~~~~~~-vlE~fV~F~~EiSvi~aR~~~G~~~~y--P~~eN~h------~~gIl~~si--------aPa~i~~ 223 (375)
T COG0026 161 ELRAAGLAEGGVP-VLEEFVPFEREISVIVARSNDGEVAFY--PVAENVH------RNGILRTSI--------APARIPD 223 (375)
T ss_pred hhhHhhhhccCce-eEEeecccceEEEEEEEEcCCCCEEEe--cccceee------ecCEEEEEE--------ecCcCCH
Confidence 53 1444 999999977888888772 222221 1111211 123332211 0222221
Q ss_pred cccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 259 CVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 259 ~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
. ..+..+++|.++.+.|+. .++||-+-+..+ | +.+|-|+=-=|.
T Consensus 224 ~-----~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEiAPRvH 268 (375)
T COG0026 224 D-----LQAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEIAPRVH 268 (375)
T ss_pred H-----HHHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeeccCCCC
Confidence 1 134568999999999986 567888887753 4 688888865554
No 79
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.68 E-value=3.1e-06 Score=80.82 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=113.3
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-ecC------CCChhHH--HHHcCCCCcEEEeeccCCCCCc
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERD------ASSIPDV--VLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-~~~------~~~~~~~--l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
||.+....+.||..+.+++.+. +|++|+.+.. ..+ ..+..+. ........++|+||.. || +
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 8889999999999999999864 7889983321 110 1111111 1122224799999975 45 5
Q ss_pred ceeeEEEeChhh---------hhc----c-CCCeEEEeccc-C---------C-eeEEEEEE-C-CE--EE-EEEEecCC
Q 019652 176 SHELSLAYDQYS---------LKK----L-EPPLVLQEFVN-H---------G-VLFKVYIV-G-EA--IK-VVRRFSLP 225 (337)
Q Consensus 176 sh~m~iv~~~~~---------L~~----l-~~p~vvQeFI~-h---------~-~d~KV~VI-G-~~--v~-~~~R~Slp 225 (337)
++|+.++...++ +.. . +..+++||+|. | + -.+||.++ . +. +. ++.|-+-.
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 778877766542 111 1 12799999993 3 4 67898887 2 22 32 34665421
Q ss_pred CCccccccCCCcee---eecCccccc--ccCCCC--CCCccc------cCCCChHHHHHHHHHHHHHh-CCcEEEEEEEE
Q 019652 226 DVTKQDLSTSAGVF---RFPRVSCAA--ASADDA--DLDPCV------AELPPRPLLERLAKELRRQL-GLRLFNLDIIR 291 (337)
Q Consensus 226 ~~~~~~~~~~~g~~---~~~~~s~~~--~~~~~~--~~~~~~------~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~ 291 (337)
......+.. .|.. +....-... ...... +.+|.. ...|.-+.+.++|.++++.+ ++.+.|.||.+
T Consensus 166 ~~~~DN~~~-Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai 244 (285)
T PF14397_consen 166 GSGVDNFHQ-GGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI 244 (285)
T ss_pred CCcccccCC-CCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE
Confidence 111111111 1221 221110000 000011 112321 24666567899999988665 89999999999
Q ss_pred eCCCCCeEEEEEecCC--CCCC
Q 019652 292 EHGTRDQFYVIDINYF--PGYG 311 (337)
Q Consensus 292 ~~~tg~~~~VIDVN~f--Pg~~ 311 (337)
++ +| +++||.|+. ||+.
T Consensus 245 t~-~G--p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 245 TE-DG--PVLLEGNARWDPGLM 263 (285)
T ss_pred cC-CC--cEEEEeeCCCCCCcH
Confidence 86 34 899999999 9987
No 80
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.66 E-value=1.7e-06 Score=82.83 Aligned_cols=219 Identities=20% Similarity=0.195 Sum_probs=129.9
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCc----------HHH-HHHHHHHHHhC--------------
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG----------KEW-RQILEEYRQTH-------------- 98 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~----------~~~-~~~l~~y~~~~-------------- 98 (337)
++.+-+.+.|.+.|+++--++.=+|..-++..+.++---+. +.| +..+..|....
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~ 98 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALR 98 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecccccccc
Confidence 45666889999999999888776655555666666533222 233 23333333210
Q ss_pred ------CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCC
Q 019652 99 ------PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (337)
Q Consensus 99 ------p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (337)
-++.=-+|-..+..+-||...+..|..+ +++.|..--++ .+. .-..|+|+||+.+.|
T Consensus 99 ~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e--------~~~--~gekt~IlKPv~GaG 161 (389)
T COG2232 99 TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE--------PLE--EGEKTLILKPVSGAG 161 (389)
T ss_pred ccCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh--------hhh--hcceeeEEeeccCCC
Confidence 0112225666999999999999999865 56666542221 111 135599999999765
Q ss_pred CCcceeeEEEeChhhhhccCCCeEEEecccCCeeEEEEEECC----EEEEEEEecCCCCccccccCCCceeeecCccccc
Q 019652 173 SAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA 248 (337)
Q Consensus 173 s~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~~d~KV~VIG~----~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~ 248 (337)
. + .-++.-.++.. -.++++||||. |+-+-|-+|++ ...++.+.-+- .. ....+.|.| +++
T Consensus 162 G--~--~el~~~~Ee~~--~~~~i~Qefi~-G~p~Svs~is~g~~a~~la~N~QiI~-~~----~~~~~~f~Y----~GN 225 (389)
T COG2232 162 G--L--VELVKFDEEDP--PPGFIFQEFIE-GRPVSVSFISNGSDALTLAVNDQIID-GL----RGEYSQFVY----KGN 225 (389)
T ss_pred c--e--eeecccccccC--CcceehhhhcC-CceeEEEEEecCcceEEEEEeeeeec-cc----cccccccee----ccC
Confidence 4 2 32222222332 37899999999 87778888877 33333333221 00 001122322 111
Q ss_pred ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeEEEEEecCC
Q 019652 249 ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYF 307 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~-GvDvi~~~~tg~~~~VIDVN~f 307 (337)
+.|-.. . +.++++++|..+...|||--- |||+++.+ .| +||||||-=
T Consensus 226 -------lTP~~~-~-~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNPR 273 (389)
T COG2232 226 -------LTPFPY-E-EVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNPR 273 (389)
T ss_pred -------cCCCcc-h-hhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecCc
Confidence 111110 1 125679999999999998644 79999975 34 899999943
No 81
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.58 E-value=6.4e-07 Score=85.19 Aligned_cols=96 Identities=14% Similarity=0.224 Sum_probs=35.7
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc--
Q 019652 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (337)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-- 190 (337)
+..|..+++.+.+.........-.+|.+..+..+......... ..-.--+|+||..+ + .+.|+.++.+.+.+.+
T Consensus 19 l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~-~~~~~~wI~KP~~~--~-rG~GI~l~~~~~~i~~~~ 94 (292)
T PF03133_consen 19 LTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFE-KNPKNLWIVKPSNG--S-RGRGIKLFNNLEQILRFS 94 (292)
T ss_dssp E-----------------------------HHHHHHHHHHHHH-TTS---EEEEES----------EEEES-HHHHHCCH
T ss_pred hhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHh-cCCCCEEEEecccc--C-CCCCceecCCHHHHHHHh
Confidence 3455555555544321101001246777666422111221111 11123699998663 3 6789999999988885
Q ss_pred --cCCCeEEEeccc-----CC--eeEEEEEE
Q 019652 191 --LEPPLVLQEFVN-----HG--VLFKVYIV 212 (337)
Q Consensus 191 --l~~p~vvQeFI~-----h~--~d~KV~VI 212 (337)
...++|+|+||. +| +|+|+||+
T Consensus 95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvl 125 (292)
T PF03133_consen 95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVL 125 (292)
T ss_dssp CCTTS-EEEEE--SSB--BTTB-EEEEEEEE
T ss_pred hhhhhhhhhhhccCCCeEEeeeeEEEEEEEE
Confidence 578999999995 46 89999999
No 82
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.55 E-value=2.7e-06 Score=83.57 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=67.1
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceee
Q 019652 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (337)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 179 (337)
++++.=..++++...||..+-+.|.++ +|++|+++ . +. ..+.||+|+||.. |+ ++.|+
T Consensus 108 ~~p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~--g~-ggkGv 165 (358)
T PRK13278 108 KVPMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPG--AK-GGRGY 165 (358)
T ss_pred CCCcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCC--CC-CCCCe
Confidence 355555777899999999999999865 89999973 2 11 1267999999943 33 67899
Q ss_pred EEEeChhhhhcc------------CCCeEEEecccCC-eeEEEEEE
Q 019652 180 SLAYDQYSLKKL------------EPPLVLQEFVNHG-VLFKVYIV 212 (337)
Q Consensus 180 ~iv~~~~~L~~l------------~~p~vvQeFI~h~-~d~KV~VI 212 (337)
.++.+++++.+. ...+++||||.-. .-+=+|+-
T Consensus 166 ~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~~f~s 211 (358)
T PRK13278 166 FIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYFYS 211 (358)
T ss_pred EEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCcEEEEEEEEe
Confidence 999999876541 4689999999833 44455654
No 83
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.48 E-value=3e-06 Score=84.85 Aligned_cols=175 Identities=17% Similarity=0.288 Sum_probs=113.6
Q ss_pred CCCceeeChH-HHHHHhccHHHHHHHHHhccccCCCCCcc-CCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCc
Q 019652 98 HPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 98 ~p~v~ViDp~-~ai~~~~dR~~~~~~L~~~~l~~~~~~I~-~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
..|+..|-|+ .+|+-+-||..+-+++... ++| +|-+--...+.+.+.+ ....++||+++|+..++ +
T Consensus 93 ~~Gi~FiGP~~~aIrdMG~K~~sk~im~~A-------gVp~vpG~~g~~qs~e~~~~--~a~eIgyPvMiKa~~GG---G 160 (670)
T KOG0238|consen 93 DAGITFIGPPPSAIRDMGDKSTSKQIMKAA-------GVPLVPGYHGEDQSDEEAKK--VAREIGYPVMIKATAGG---G 160 (670)
T ss_pred HcCCeEECCCHHHHHHhcchHHHHHHHHhc-------CCccccCcccccccHHHHHH--HHHhcCCcEEEEeccCC---C
Confidence 3578888765 6788888999988888754 554 3443222111111111 24579999999987755 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCEEE----EEEEe-cCCCCccccccCCCc
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEAIK----VVRRF-SLPDVTKQDLSTSAG 237 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~v~----~~~R~-Slp~~~~~~~~~~~g 237 (337)
..||-++-+++++.+. +..++++.||...+-+-|=|.||+.- .-+|. |+ ...
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSv--------QRR-- 230 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSV--------QRR-- 230 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccch--------hhh--
Confidence 6799999999776542 67899999999778888888887632 22332 21 000
Q ss_pred eeeecCcccccccCCCCCCCccccCCCC--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 238 VFRFPRVSCAAASADDADLDPCVAELPP--RPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~--~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
++.- ......| .++. ...+.+.|+++++++|-.-+| |.+|.|.. + .+|++|+|.==.
T Consensus 231 ----nQKi------iEEaPap---~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~-~-~FyFmEmNTRLQ 290 (670)
T KOG0238|consen 231 ----NQKI------IEEAPAP---NLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK-D-NFYFMEMNTRLQ 290 (670)
T ss_pred ----hhhh------hhcCCCC---CCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC-C-cEEEEEeeceee
Confidence 0000 0000001 1111 235778999999999999999 99999984 4 689999997443
No 84
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.46 E-value=8.8e-07 Score=83.64 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=100.0
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCC-Ccce-eeEE
Q 019652 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSH-ELSL 181 (337)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs-~~sh-~m~i 181 (337)
+=|-...+-+.+|=.+|..-.++ ++++|+|+.+++..+. ....|.||+|+||-.+.|. ..++ +...
T Consensus 103 lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~-----~~~el~FPvILKP~mgg~~~~~araKa~~ 170 (415)
T COG3919 103 LPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDT-----LVDELTFPVILKPGMGGSVHFEARAKAFT 170 (415)
T ss_pred CCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhh-----hhhheeeeEEecCCCCCcceeehhhheee
Confidence 34455666666777777776665 7899999999743221 2245999999999885432 1111 2334
Q ss_pred EeChhhhhcc---------CCCeEEEecccCC----eeEEEEEECCEEE--EEEEecCCCCccccccCCCceeeecCccc
Q 019652 182 AYDQYSLKKL---------EPPLVLQEFVNHG----VLFKVYIVGEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSC 246 (337)
Q Consensus 182 v~~~~~L~~l---------~~p~vvQeFI~h~----~d~KV~VIG~~v~--~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 246 (337)
+-+.++++.. ...+|+||||+-| +.|-.++..++=+ +..|+..-. +.+|
T Consensus 171 a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqy-----------Pvdf----- 234 (415)
T COG3919 171 AADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQY-----------PVDF----- 234 (415)
T ss_pred ccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcC-----------Cccc-----
Confidence 4444565531 5679999999855 4444444433322 123332200 0010
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 247 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.......+.++...+-+.|+++-+.++-+ |..||+..|..+| .+-++|||-=|+
T Consensus 235 --------gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 235 --------GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred --------ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 11112234555444455566655555544 5569999998888 799999999887
No 85
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.45 E-value=4.8e-06 Score=81.46 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc--
Q 019652 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (337)
Q Consensus 114 ~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 191 (337)
+||..+++.|.+. +|++|++..- . ..+.||+|+||..|.|. -|.|.+++.+.++|...
T Consensus 125 ~dKk~~yk~L~~a-------GI~~Pk~~~~---p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEKA-------GIPYPKLFKD---P---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHHc-------CCCCceeecC---c---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 5777788888854 8999998741 1 24789999999887653 37899999999888643
Q ss_pred ---C---------CCeEEEecccCC-eeEEEEEE--CCEEE--EEEEecCCCCccccccCCCceeeecCcccccccCCC-
Q 019652 192 ---E---------PPLVLQEFVNHG-VLFKVYIV--GEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD- 253 (337)
Q Consensus 192 ---~---------~p~vvQeFI~h~-~d~KV~VI--G~~v~--~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~- 253 (337)
+ ..+++||||.-. .-+=+|+- -+++. ..-||-.-|+ +|+...+..-+......+
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~p~ 256 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEEPR 256 (366)
T ss_pred hhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccCCc
Confidence 1 334799999833 55556654 45333 2333211121 122211100000000000
Q ss_pred ---CCCCccc-cCCCChHHHHHHHHHHHHHhC-------CcEEEEEEEEeCCCCCeEEEEEecC
Q 019652 254 ---ADLDPCV-AELPPRPLLERLAKELRRQLG-------LRLFNLDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 254 ---~~~~~~~-~~~p~~~~~~~lA~~l~~~LG-------L~l~GvDvi~~~~tg~~~~VIDVN~ 306 (337)
..-.|.. .+. ..+.+.+++.++.++++ ..-|.+|++++++ + .++|+|||.
T Consensus 257 ~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 257 YIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred eEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 0000110 111 23556778888888877 5667799998753 4 689999984
No 86
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.9e-06 Score=82.86 Aligned_cols=219 Identities=13% Similarity=0.217 Sum_probs=129.1
Q ss_pred CceEEEEccCcH------HHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC
Q 019652 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147 (337)
Q Consensus 74 ~fDvilhK~t~~------~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~ 147 (337)
.-|.||.|-..- ..+..+.-+... |++-||++.++...+||--...-|.++....+...++.=..+..-...
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~qya--giP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK 232 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQYA--GIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHK 232 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHHhc--CCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCch
Confidence 557777776432 122233334444 899999999999999995444334443333332344432222221011
Q ss_pred CChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCeeEEEEEECCEEEEEE
Q 019652 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGVLFKVYIVGEAIKVVR 220 (337)
Q Consensus 148 ~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~~d~KV~VIG~~v~~~~ 220 (337)
. +. ..-+||+|+| .++|-+ .-|=..|.|.++|.++ +.-.-+|-||+.-.|+||=-||..+.+++
T Consensus 233 -~----m~-s~~tyPvVVk--vghahs-GmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDaKYDiriQKIG~nYKaym 303 (488)
T KOG3895|consen 233 -E----ML-SQPTYPVVVK--VGHAHS-GMGKIKVENHEDFQDIASVVALTKTYATAEPFIDAKYDIRIQKIGHNYKAYM 303 (488)
T ss_pred -h----hc-cCCCCcEEEE--eccccc-ccceeeecchhhhHhHHHHHHHHhhhhhccccccccceeehhhhhhhHHHHh
Confidence 1 11 2246999999 555432 2233466777777663 55567899999559999999999999999
Q ss_pred EecC-CCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCe
Q 019652 221 RFSL-PDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQ 298 (337)
Q Consensus 221 R~Sl-p~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~~~~tg~~ 298 (337)
|.|+ +| |+++.|.--..+++ + .+.-+.-...+.+.+ ||+++.||.+... +| +
T Consensus 304 RtsIsgn-----WKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-r 357 (488)
T KOG3895|consen 304 RTSISGN-----WKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-R 357 (488)
T ss_pred hhhhccC-----cccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-h
Confidence 9997 34 55443311101110 0 012233344455555 6999999999876 46 4
Q ss_pred EEEEEecC--CCCCC-CCccchHHHHHHHHHHHH
Q 019652 299 FYVIDINY--FPGYG-KMPEYEHIFTDFLLSLTQ 329 (337)
Q Consensus 299 ~~VIDVN~--fPg~~-gv~~~~~~l~~~l~~~i~ 329 (337)
=||+|||. .|=+. ..++-..++.+++..++.
T Consensus 358 d~i~eV~d~smpliGeh~eeDrql~~~Lvvskma 391 (488)
T KOG3895|consen 358 DYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMA 391 (488)
T ss_pred hheeeeccccccccccchhHHHHHHHHHHHHHhh
Confidence 58999997 45554 334444555555555443
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.18 E-value=1.5e-05 Score=71.97 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=57.6
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcE-EEeeccCCCCCcceeeEEEeChhhhh----
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLK---- 189 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~-VvKp~~a~Gs~~sh~m~iv~~~~~L~---- 189 (337)
+|..+-+.+.+ ++||++++.+.. +.++..+.+.. ..+|+ |+| ++|.+...++.|+.+.++..
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViK---adGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIK---ADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEE---ESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEc---cCCCCCCCEEEEeCCHHHHHHHHH
Confidence 45556666775 489999998886 44444555554 56788 999 56777788999999885422
Q ss_pred c---------cCCCeEEEecccCCeeEEEEEE--CCEEE
Q 019652 190 K---------LEPPLVLQEFVNHGVLFKVYIV--GEAIK 217 (337)
Q Consensus 190 ~---------l~~p~vvQeFI~h~~d~KV~VI--G~~v~ 217 (337)
+ ...++|+|||+. |..+-++++ |+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFLE-GEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEeccC-CeEEEEEEEEcCCeEE
Confidence 2 146899999998 866666555 77765
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.16 E-value=0.00011 Score=72.87 Aligned_cols=240 Identities=17% Similarity=0.256 Sum_probs=142.7
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHh-ccHHHHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHL-HNRQSMLQCVA 124 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~-~dR~~~~~~L~ 124 (337)
...+++.|++.+++++.|-|+.||.. -....|.++ |++|.=|.....++ .+|.-+-+.+.
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~~--Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRAA--GIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHHC--CCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 45699999999999999999998741 233456666 99999998766555 46777777777
Q ss_pred hccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------------
Q 019652 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------- 191 (337)
Q Consensus 125 ~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 191 (337)
+. +||++.+-+.+ +.+.....+.+ .+.|+|+| ++|-+...|+.|+.+.++-.+.
T Consensus 113 k~-------~IPta~y~~f~-~~e~a~ayi~~--~g~piVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~ 179 (428)
T COG0151 113 KY-------GIPTAEYEVFT-DPEEAKAYIDE--KGAPIVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSA 179 (428)
T ss_pred Hc-------CCCcccccccC-CHHHHHHHHHH--cCCCEEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhccccCC
Confidence 54 78888888776 44444454544 78999999 6777778899999998653321
Q ss_pred CCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCC---CccccccCCCceeeecCcccccccCCCCCCCccccCCCChH
Q 019652 192 EPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPD---VTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRP 267 (337)
Q Consensus 192 ~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~---~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~ 267 (337)
...+|++||+.-. .-+-++|=|+.+.-. +...| .-.++.. +|.+-.++.+..--+.++..+.--++
T Consensus 180 g~~VVIEEfL~GeE~S~~a~~DG~~v~p~--p~aQDhKra~dgD~G--------PNTGGMGaysp~P~~t~e~~~~~~~~ 249 (428)
T COG0151 180 GARVVIEEFLDGEEFSLQAFVDGKTVIPM--PTAQDHKRAYDGDTG--------PNTGGMGAYSPAPFITDEVVERAVEE 249 (428)
T ss_pred CCcEEEEecccceEEEEEEEEcCCeEEEC--ccccccccccCCCCC--------CCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 2569999999933 555566668877622 00001 0011100 11111111111100111100000113
Q ss_pred HHHHHHHHHHHHhCCcEEEE---EEEEeCCCCCeEEEEEecCCCCCC----CCccchHHHHHHHHHHHHcc
Q 019652 268 LLERLAKELRRQLGLRLFNL---DIIREHGTRDQFYVIDINYFPGYG----KMPEYEHIFTDFLLSLTQSR 331 (337)
Q Consensus 268 ~~~~lA~~l~~~LGL~l~Gv---Dvi~~~~tg~~~~VIDVN~fPg~~----gv~~~~~~l~~~l~~~i~~~ 331 (337)
.++..+..+++. |..+-|| =+.+.. +| |+|||.|.=.|== =++-..+-|.+.+...+.++
T Consensus 250 Iv~ptv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 250 IVEPTVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred HHHHHHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 345566677777 8877774 334443 34 8999999877711 11222234556666655553
No 89
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.06 E-value=3.7e-05 Score=78.26 Aligned_cols=175 Identities=13% Similarity=0.204 Sum_probs=114.2
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCcc-CCcEEEEecCCCChhHHH-HHcCCCCcEEEeeccCCCCCc
Q 019652 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVV-LKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~-~P~~~~~~~~~~~~~~~l-~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
-|++.|=| +.+|+.+-||...-.+..+. ++| +|-+.=. ..+..... ....++||+.+|...++ +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g~---~qd~~~~~~~A~eiGyPVlIKAsaGG---G 164 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHGP---IQDAAELVAIAEEIGYPVLIKASAGG---G 164 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCc---ccCHHHHHHHHHhcCCcEEEEeccCC---C
Confidence 48888876 56888999999877777654 443 4554322 12222222 23469999999965543 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCCc
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAG 237 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~g 237 (337)
..||-++.+++++.+. +.-|+++.|+...+-+-|=|+||+ |+.-.|. |+- ..
T Consensus 165 GKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQ--------RR-- 234 (645)
T COG4770 165 GKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQ--------RR-- 234 (645)
T ss_pred CCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchh--------hh--
Confidence 7899999999877652 678999999998888888888764 3434443 321 00
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 238 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
|+.-- ..+..--+++.. .+.+-+.|++++++.|-.=+| |-+|++.+ + ..|++|+|.==.
T Consensus 235 ----hQKVI--EEAPaP~l~~~~-----R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQ 294 (645)
T COG4770 235 ----HQKVI--EEAPAPFLTEET-----REAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQ 294 (645)
T ss_pred ----cchhh--hcCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeeccee
Confidence 11000 000000111111 346778999999999999999 99999974 4 489999997443
No 90
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.90 E-value=0.00014 Score=76.60 Aligned_cols=172 Identities=17% Similarity=0.280 Sum_probs=111.8
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccC-CcEEEEecCCCChhHHHH-HcCCCCcEEEeeccCCCCCc
Q 019652 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVVL-KAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~-P~~~~~~~~~~~~~~~l~-~~~l~fP~VvKp~~a~Gs~~ 175 (337)
.|+..|-| ++.+..+-||.+.-.+-.+. ++|+ |-+- ...++..+.+. ..+.+||+++|-..++ +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~---~~~~~~ee~~~fa~~~gyPvmiKA~~GG---G 170 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTD---GPIETIEEALEFAEEYGYPVMIKAAAGG---G 170 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCC---CCcccHHHHHHHHHhcCCcEEEEEccCC---C
Confidence 48888887 67788889998755544433 3432 2210 00122322222 2468999999966544 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCCc
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAG 237 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~g 237 (337)
.+||-+|-++++|.+. +..++++.||...+-+-|=++||+ |+.++|- |.- ..
T Consensus 171 GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQ--------RR-- 240 (1149)
T COG1038 171 GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQ--------RR-- 240 (1149)
T ss_pred ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchh--------hc--
Confidence 7899999999888753 678999999996688899999765 5555664 221 00
Q ss_pred eeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecC
Q 019652 238 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~ 306 (337)
|+.-- ..+....++++. ...+-+-|.++++..|-.-+| +.++++++ | ++|+||||-
T Consensus 241 ----hQKVV--E~APa~~L~~~~-----R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNP 297 (1149)
T COG1038 241 ----HQKVV--EVAPAPYLSPEL-----RDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNP 297 (1149)
T ss_pred ----cceeE--EecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecC
Confidence 11000 000011222221 345678899999999999999 99999975 4 589999994
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.73 E-value=0.00045 Score=71.64 Aligned_cols=174 Identities=16% Similarity=0.282 Sum_probs=110.2
Q ss_pred CCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccC-CcEEEEecCC-CChhHHHH-HcCCCCcEEEeeccCCCCC
Q 019652 99 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDA-SSIPDVVL-KAGLTLPLVAKPLVADGSA 174 (337)
Q Consensus 99 p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~-P~~~~~~~~~-~~~~~~l~-~~~l~fP~VvKp~~a~Gs~ 174 (337)
-|+..|-| ++-|..+-||...-++-.+. ++++ |-|- .+ ....+++. ....+||+|.| .|.|.
T Consensus 130 AGi~fiGPspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTp----gPitt~~EA~eF~k~yG~PvI~K--AAyGG- 195 (1176)
T KOG0369|consen 130 AGIRFIGPSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTP----GPITTVEEALEFVKEYGLPVIIK--AAYGG- 195 (1176)
T ss_pred cCceEeCCCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCC----CCcccHHHHHHHHHhcCCcEEEe--ecccC-
Confidence 47888876 56778888998755554443 3332 2110 01 11222221 23478999999 45555
Q ss_pred cceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCC
Q 019652 175 KSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSA 236 (337)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~ 236 (337)
+.+||-+|..-+++.+. +..+.++.|++..+-+-|-.+||+ |+.++|. |.. ..
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQ--------RR- 266 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQ--------RR- 266 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchh--------hh-
Confidence 68899999998776642 677999999998888888889775 4555554 210 00
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 237 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 237 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
|+.-- ..+.-..++|.+ .+.+..-|.++++..|-.-+| +.+++|++ | ++|+||||.==.
T Consensus 267 -----HQKVV--EiAPA~~Lp~~v-----R~~~~~davklAk~vgY~NAGTvEFLvD~~-g-~hYFIEvN~RlQ 326 (1176)
T KOG0369|consen 267 -----HQKVV--EIAPAKTLPPEV-----RDAILTDAVKLAKHVGYENAGTVEFLVDQK-G-RHYFIEVNPRLQ 326 (1176)
T ss_pred -----hccee--EecccccCCHHH-----HHHHHHHHHHHHHHhCcccCCceEEEEccC-C-CEEEEEecCcee
Confidence 11100 000111222222 345667889999999999999 99999975 5 579999996443
No 92
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00033 Score=70.75 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=47.6
Q ss_pred cCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhccCCCeEEEecc------cCC-eeEE
Q 019652 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV------NHG-VLFK 208 (337)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI------~h~-~d~K 208 (337)
..|++.++-.|.+++.+......-.. +|+||-. |+.+-|+.++.....+. -..|+++|+|| |-+ +|.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~p-k~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFP-KDRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCC-CcccHHHHHHhhcceeecCcceeEE
Confidence 57888888544444444443322223 8888755 33455788877766665 46799999998 334 9999
Q ss_pred EEEE
Q 019652 209 VYIV 212 (337)
Q Consensus 209 V~VI 212 (337)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 9988
No 93
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.28 E-value=0.026 Score=52.61 Aligned_cols=181 Identities=17% Similarity=0.253 Sum_probs=102.2
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
|.-.-...|.||+..-+-+++.. .....|+..-+.++.++ +.-..|.-++|+||..+||+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~----i~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDD----IDFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhh----hhhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 34445667889998888887642 12345555544333222 22345777999998886654 344443
Q ss_pred h-----hh----hhc-----------------cCCCeEEEecccCC-----eeEEEEEECCEEEEEEEecCCCCcccccc
Q 019652 185 Q-----YS----LKK-----------------LEPPLVLQEFVNHG-----VLFKVYIVGEAIKVVRRFSLPDVTKQDLS 233 (337)
Q Consensus 185 ~-----~~----L~~-----------------l~~p~vvQeFI~h~-----~d~KV~VIG~~v~~~~R~Slp~~~~~~~~ 233 (337)
. +. +.. +.+-+++++|+... .|||+||.++++....--+-..-..
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~---- 151 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNH---- 151 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCe----
Confidence 3 11 111 25668999999543 6999999999765443322211000
Q ss_pred CCCceee--ecCcccccccCCCCCCCccccCCC-ChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 234 TSAGVFR--FPRVSCAAASADDADLDPCVAELP-PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 234 ~~~g~~~--~~~~s~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
....|+ +....-.. ... ..+. .+.| ..+.|.++|.+|++- ..+.-||+-..+ | ++|+=|+=.+||=
T Consensus 152 -~~~~yd~dw~~l~~~~--~~~--~~~~-~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~~ 220 (239)
T PF14305_consen 152 -KRNFYDRDWNRLPFRS--DYP--PDED-IPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPGA 220 (239)
T ss_pred -EEEEECcccCCCcccc--CCC--CCCC-CCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCCC
Confidence 011221 11111000 000 0111 1222 235678899888886 557789999764 2 6999999999996
Q ss_pred CCCc
Q 019652 311 GKMP 314 (337)
Q Consensus 311 ~gv~ 314 (337)
.-.+
T Consensus 221 G~~~ 224 (239)
T PF14305_consen 221 GFEP 224 (239)
T ss_pred cCCC
Confidence 5333
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.27 E-value=0.00093 Score=66.31 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=62.0
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCC-CcEEEeeccCC-CCCcceeeEEEeChhhhhcc---
Q 019652 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVAD-GSAKSHELSLAYDQYSLKKL--- 191 (337)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l--- 191 (337)
+...++|++ .+|++|++.++. +.++..+.. ..++ ||+|+||..-. |...+.++.++.+++++.+.
T Consensus 6 ~~aK~ll~~-------~GIpvp~~~~~~-~~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~ 75 (386)
T TIGR01016 6 YQAKQIFAK-------YGIPVPRGYVAT-SVEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEK 75 (386)
T ss_pred HHHHHHHHH-------cCCCCCCceeeC-CHHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHH
Confidence 345566775 489999999885 232333222 2477 99999997422 33345689999888776441
Q ss_pred --C---------------CCeEEEecccCCeeEEEEEECCE
Q 019652 192 --E---------------PPLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 192 --~---------------~p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
. ..+++|+|+++++++-|.+++|.
T Consensus 76 l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~ 116 (386)
T TIGR01016 76 LLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDR 116 (386)
T ss_pred HhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcC
Confidence 1 24899999998899999999885
No 95
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.08 E-value=0.0016 Score=64.70 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCC-CCcEEEeeccC-CCCCcceeeEEEeChhhhhcc-
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL- 191 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l- 191 (337)
+-+.+.++|.+ ++|++|++.++. +.++..... ..+ +||+|+||... .|.+.+.++.+..+++++.+.
T Consensus 4 ~e~~ak~lL~~-------~gIpvp~~~~~~-~~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 4 HEYQAKELFAK-------YGVPVPRGIVAT-TPEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CHHHHHHHHHH-------cCCCCCCCeeeC-CHHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 34556677775 489999999886 233333222 247 89999999753 344467799999888766441
Q ss_pred -----C-----------C---CeEEEecccCCeeEEEEEECCE
Q 019652 192 -----E-----------P---PLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 192 -----~-----------~---p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
+ . .+++|+|++++.++-+.+..|.
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~ 116 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDR 116 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcC
Confidence 1 1 2899999998899999999774
No 96
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=96.81 E-value=0.0096 Score=64.15 Aligned_cols=195 Identities=19% Similarity=0.312 Sum_probs=119.6
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccC-CCCCcce
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSH 177 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~sh 177 (337)
++.|+ -+|+.|...-||++..+.|.++ +|.-|.+-.+++ .++... -...++||+++.|..- .|+
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~--F~~~VgYP~lvRPSYVLSGa---- 1082 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK--FAEKVGYPVLVRPSYVLSGA---- 1082 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH--HHHhcCCceEecccceecch----
Confidence 34444 4688999999999999999976 677888766642 111111 1346999999999542 344
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEEC--CEEEEEEEecCCCCccccccCCCceeeecCccc
Q 019652 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 246 (337)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG--~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 246 (337)
.|.+++++++|+.. +-|+|+-.||+..+++-|=.|+ +++.+. -.|.. ++.-+....+...-
T Consensus 1083 AMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~h-aiSEH-vEnAGVHSGDAtlv------ 1154 (1435)
T KOG0370|consen 1083 AMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVASDGKVLVH-AISEH-VENAGVHSGDATLV------ 1154 (1435)
T ss_pred hhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhccCCeEEEE-ehhhh-hhcccccCCceeEe------
Confidence 69999999998763 6799999999965666664443 333321 12211 01000000000000
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEec-----CCCCCCCCccchHHH
Q 019652 247 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDIN-----YFPGYGKMPEYEHIF 320 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN-----~fPg~~gv~~~~~~l 320 (337)
..+.++.+.. .+.+++++.+++++|..+ =|++-+|..+ +...|||-| .||-..+.-+. -|
T Consensus 1155 ----~Ppq~l~~~t-----~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKtlgv--df 1220 (1435)
T KOG0370|consen 1155 ----LPPQDLSADT-----LERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKTLGV--DF 1220 (1435)
T ss_pred ----CCchhcCHHH-----HHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehhcCc--hH
Confidence 0011111111 356789999999999987 3678888653 468999999 57776655444 34
Q ss_pred HHHHHHHHHc
Q 019652 321 TDFLLSLTQS 330 (337)
Q Consensus 321 ~~~l~~~i~~ 330 (337)
.+.-.+.++.
T Consensus 1221 i~~At~~i~g 1230 (1435)
T KOG0370|consen 1221 IALATRAIMG 1230 (1435)
T ss_pred HHHHHHHHhC
Confidence 4544555544
No 97
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.026 Score=57.77 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc------------CCCeEEEecccCC-------eeEEEEEEC
Q 019652 158 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHG-------VLFKVYIVG 213 (337)
Q Consensus 158 ~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------~~p~vvQeFI~h~-------~d~KV~VIG 213 (337)
+-..++|+||. +.+.+.|+.++.+.+.+... +..+++|-||++. +|+|.||+=
T Consensus 197 ~~~~~wIvKP~---~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlv 268 (497)
T KOG2157|consen 197 SERSWWIVKPA---SKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLV 268 (497)
T ss_pred cccceEEeccc---cccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEe
Confidence 55789999964 45578899999888776543 5678999999652 788999983
No 98
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.54 E-value=0.0082 Score=60.69 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=92.8
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCC--------CCceEEEEccCcHHH-------HHHHHHHHHhCCCceeeChHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQ--------GPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLDPPYAI 110 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q--------~~fDvilhK~t~~~~-------~~~l~~y~~~~p~v~ViDp~~ai 110 (337)
...|.++-+++|++.+..|+.. |+-. .+.|+|.=|+-+.+. ...++.|.+. .+++++|+. .
T Consensus 202 f~~f~~~f~~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~--av~~vgsfr-s 277 (445)
T PF14403_consen 202 FEVFQRLFEEHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDG--AVCMVGSFR-S 277 (445)
T ss_pred HHHHHHHHHHcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcC--CeEEecchh-h
Confidence 3458888899999999999987 5432 289999988766432 2345566665 799999995 4
Q ss_pred HHhccHHHHHHHHHh-cc---ccCCC-C--CccCCcEEEEec-------CCCChh-HHHHHcCCCCcEEEeeccCCCCCc
Q 019652 111 QHLHNRQSMLQCVAD-MN---LSNSY-G--KVDVPRQLVIER-------DASSIP-DVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 111 ~~~~dR~~~~~~L~~-~~---l~~~~-~--~I~~P~~~~~~~-------~~~~~~-~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
..++||.-.. +|.. .. ++... . .=-+|-|..++. +..++. ..+.+.. -+|+||..+.|
T Consensus 278 ~l~hnK~iFa-iL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Yg--- 350 (445)
T PF14403_consen 278 QLLHNKIIFA-ILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEYG--- 350 (445)
T ss_pred hhhhhhHHHH-HhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEeccccccC---
Confidence 6788887533 3321 10 11000 0 114788888864 122222 2333333 79999988764
Q ss_pred ceeeEE--EeChhhhhc-----cCCCeEEEecccC
Q 019652 176 SHELSL--AYDQYSLKK-----LEPPLVLQEFVNH 203 (337)
Q Consensus 176 sh~m~i--v~~~~~L~~-----l~~p~vvQeFI~h 203 (337)
+||+.+ =++++++.+ ++.|+|+|||+.-
T Consensus 351 g~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 351 GKGVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred CCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 556654 455555544 3789999999964
No 99
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.48 E-value=0.1 Score=44.15 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=66.3
Q ss_pred cEEEeeccCCCCCcceeeEEEeChhhhhc-----cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCC
Q 019652 162 PLVAKPLVADGSAKSHELSLAYDQYSLKK-----LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSA 236 (337)
Q Consensus 162 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-----l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~ 236 (337)
|+-+||..-. ..-.=.|+...+.|.. -+.++++.|.++-..+||+||+.++++...+-..
T Consensus 3 ~~FiKP~~~~---K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~~~~E~R~fi~~g~vv~~s~Y~~------------ 67 (130)
T PF14243_consen 3 PVFIKPPDDD---KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVEIESEWRCFIVDGEVVTGSPYRG------------ 67 (130)
T ss_pred CeEeCCCCCC---CcceeEEEcchhhccccCCCCCCceEEEeceEeeeeeEEEEEECCEEEEEeecCC------------
Confidence 7788886622 1111123333445443 2778999999997799999999999986643210
Q ss_pred ceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH-HHhCCcEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 237 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR-RQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 237 g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~-~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
....+ ++.+.+......+. ....-.-|.+||-+.. +| +.+|||+|.+=+
T Consensus 68 ----------------~~~~~------~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 68 ----------------DWDLE------PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ----------------CcccC------CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 00000 11233233333332 1556777889999885 45 589999997655
No 100
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=94.89 E-value=0.2 Score=56.75 Aligned_cols=187 Identities=13% Similarity=0.222 Sum_probs=111.9
Q ss_pred CceeeChHH-HHHHhccHHHHHHHHHhccccC---CCCCccCCcEE------EEecC------CCChhHHHH-HcCCCCc
Q 019652 100 EVTVLDPPY-AIQHLHNRQSMLQCVADMNLSN---SYGKVDVPRQL------VIERD------ASSIPDVVL-KAGLTLP 162 (337)
Q Consensus 100 ~v~ViDp~~-ai~~~~dR~~~~~~L~~~~l~~---~~~~I~~P~~~------~~~~~------~~~~~~~l~-~~~l~fP 162 (337)
++..|-||. ++..+-||..+.-+-+.++.+. ...++.++... .+..+ ..+..+.|+ ...++||
T Consensus 162 ~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfP 241 (2196)
T KOG0368|consen 162 GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFP 241 (2196)
T ss_pred CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCc
Confidence 588998875 5677889998776655554321 11244444322 11101 011222222 2348999
Q ss_pred EEEeeccCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCcccccc
Q 019652 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS 233 (337)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~ 233 (337)
+.+|-..|+ ++.|+-.+.+.++++.+ +.|+.+-.-..+.+-+-|=.++|++--+.--...+-+ +.
T Consensus 242 vMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCS---iQ 315 (2196)
T KOG0368|consen 242 VMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCS---IQ 315 (2196)
T ss_pred eEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeecccch---HH
Confidence 999966654 46688899999998765 6789988888877888888887754311100000100 00
Q ss_pred CCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecC
Q 019652 234 TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 234 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~ 306 (337)
.. |+.-- .. -++++-|. -.-..|++.|.++++..|--=+| |..+....+| +||++|.|-
T Consensus 316 RR------hQKII--EE-APatIap~----etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLELNP 375 (2196)
T KOG0368|consen 316 RR------HQKII--EE-APATIAPP----ETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLELNP 375 (2196)
T ss_pred HH------HHHHH--hh-CCcccCCH----HHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEecCc
Confidence 00 11000 00 01111110 01246889999999999999999 9999987676 899999994
No 101
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=93.69 E-value=0.083 Score=48.74 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=47.0
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCC---CCCcceeeEE-EeChhhh
Q 019652 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD---GSAKSHELSL-AYDQYSL 188 (337)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~---Gs~~sh~m~i-v~~~~~L 188 (337)
.++-....++|+. .||++|++.++.+ .++.... ...++||+++|-..++ =| ...++.+ +.+++++
T Consensus 9 ~L~e~e~~~lL~~-------yGI~~~~~~~~~~-~~ea~~~--a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 9 WLTEAEAKELLAA-------YGIPVPPTRLVTS-AEEAVAA--AEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEV 77 (222)
T ss_dssp EE-HHHHHHHHHT-------TT------EEESS-HHHHHHH--HHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHH
T ss_pred ccCHHHHHHHHHH-------cCcCCCCeeEeCC-HHHHHHH--HHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHH
Confidence 3455667888884 4999999999863 2222222 2348999999976653 22 3345665 5677665
Q ss_pred hcc----------------CCCeEEEeccc-CCeeEEEEEECC
Q 019652 189 KKL----------------EPPLVLQEFVN-HGVLFKVYIVGE 214 (337)
Q Consensus 189 ~~l----------------~~p~vvQeFI~-h~~d~KV~VIG~ 214 (337)
++. -..+++|+.++ .|.++-|.+.-|
T Consensus 78 ~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~D 120 (222)
T PF13549_consen 78 REAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRD 120 (222)
T ss_dssp HHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEEC
Confidence 541 13489999999 559999888855
No 102
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=91.93 E-value=8.6 Score=40.40 Aligned_cols=138 Identities=16% Similarity=0.262 Sum_probs=89.9
Q ss_pred hhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHh-ccHHHHHHHHHh
Q 019652 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHL-HNRQSMLQCVAD 125 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~-~dR~~~~~~L~~ 125 (337)
.++...|+++.|.+|.+-|+.||..- ..-.+.+. |+++.-|..--.++ .+|.-+-..+.+
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~G-----------------l~~~l~~~--gi~~FGPs~~aAqlE~sK~fsK~fm~r 118 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVAG-----------------LADVLRSA--GIPCFGPSKQAAQLEASKNFSKDFMHR 118 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhhh-----------------hhhhhhcc--CcceeCchHHHHHhhhhHHHHHHHHHh
Confidence 34888999999999999999988521 11123333 67888877544333 345555555554
Q ss_pred ccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh-hhc------------cC
Q 019652 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS-LKK------------LE 192 (337)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~-L~~------------l~ 192 (337)
++||+-.+.... +.+.....+.. .--+++|+| |+|-+-..++.+..+.++ +.. ..
T Consensus 119 -------~~IPTA~y~~ft-~~e~a~sfi~~-~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG 186 (788)
T KOG0237|consen 119 -------HNIPTAKYKTFT-DPEEAKSFIQS-ATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAG 186 (788)
T ss_pred -------cCCCcceeeeeC-CHHHHHHHHHh-CCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhcccc
Confidence 488888887775 34333333333 223789999 899888889998888743 222 25
Q ss_pred CCeEEEecccCC-eeEEEEEECCE
Q 019652 193 PPLVLQEFVNHG-VLFKVYIVGEA 215 (337)
Q Consensus 193 ~p~vvQeFI~h~-~d~KV~VIG~~ 215 (337)
..+|++||..-. +-+=.|+=|..
T Consensus 187 ~tvViEE~LEGeEvS~laftDG~s 210 (788)
T KOG0237|consen 187 KTVVIEELLEGEEVSFLAFTDGYS 210 (788)
T ss_pred ceEehhhhcCcceEEEEEEecCcc
Confidence 678999999933 55555555543
No 103
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=91.27 E-value=0.83 Score=45.67 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=59.5
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCc-EEEeecc-CCCCCcceeeEEEeChhhhhcc----
Q 019652 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL---- 191 (337)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~-a~Gs~~sh~m~iv~~~~~L~~l---- 191 (337)
...++|++ .+|++|++.++. +.++..... ..++|| +|+|..+ ..|-..+.++.+..+++++.+.
T Consensus 7 eak~lL~~-------yGIpvp~~~~~~-~~~ea~~~a--~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~l 76 (392)
T PRK14046 7 QAKELLAS-------FGVAVPRGALAY-SPEQAVYRA--RELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDL 76 (392)
T ss_pred HHHHHHHH-------cCCCCCCceEEC-CHHHHHHHH--HHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 34566764 489999999886 333333322 348895 5999754 3344567888888888776542
Q ss_pred -C---------------CCeEEEecccCCeeEEEEEECCE
Q 019652 192 -E---------------PPLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 192 -~---------------~p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
+ .-+++|++++++.++-+.+.-|.
T Consensus 77 l~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~ 116 (392)
T PRK14046 77 LGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDR 116 (392)
T ss_pred hcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECC
Confidence 1 12799999998888888887553
No 104
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=90.59 E-value=1.2 Score=42.97 Aligned_cols=91 Identities=19% Similarity=0.418 Sum_probs=60.7
Q ss_pred CCeEEEecccCC--eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 019652 193 PPLVLQEFVNHG--VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 270 (337)
Q Consensus 193 ~p~vvQeFI~h~--~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~ 270 (337)
.-+++.+|++-+ ..|||||-+++++++-.+-. +. |.| .. ...... ...+.
T Consensus 150 ~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-----------~~~--L~---------~~~~~I-----~~~I~ 201 (299)
T PF07065_consen 150 YELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-----------YDF--LE---------ELKEEI-----RSKIQ 201 (299)
T ss_pred eEEEEeccccCCccceEEEEEECCEEEEEecccc-cc-----------cHH--HH---------HHHHHH-----HHHHH
Confidence 346889999755 99999999999997744433 31 111 00 000000 12334
Q ss_pred HHH-HHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 271 RLA-KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 271 ~lA-~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
+.. ..+...+.+.=|-|||.+.... ++.++||+|.|-+-.+
T Consensus 202 ~F~~~~I~~~~~~~~~v~DVyi~~~~-~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 202 EFFEEHIKPKFPLDNYVFDVYITRDK-DKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHHhhCCCCCEEEEEEEcCCC-CeEEEEEecCCcccCc
Confidence 444 5678889999999999998753 3799999999988553
No 105
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=88.53 E-value=2.1 Score=38.86 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=46.8
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCC-cEEEeeccCC-CCCcceeeEEEeChhhhhcc----
Q 019652 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVAD-GSAKSHELSLAYDQYSLKKL---- 191 (337)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l---- 191 (337)
..-++|++ ++|++|+..++.+ .+++.+...+ ++. ++|+|+.+-. |--.+-++-++.++++..+.
T Consensus 6 qaK~ll~~-------~gi~vp~g~~a~s-~eea~~~~~~--l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~m 75 (202)
T PF08442_consen 6 QAKELLRK-------YGIPVPRGVVATS-PEEAREAAKE--LGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEM 75 (202)
T ss_dssp HHHHHHHC-------TT----SEEEESS-HHHHHHHHHH--HTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHH-------cCCCCCCeeecCC-HHHHHHHHHH--hCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHH
Confidence 33466664 5899999999963 3334333333 444 6899996654 44446678889898775542
Q ss_pred -C---------------CCeEEEecccCCeeEEEEEE
Q 019652 192 -E---------------PPLVLQEFVNHGVLFKVYIV 212 (337)
Q Consensus 192 -~---------------~p~vvQeFI~h~~d~KV~VI 212 (337)
+ .-++++|+++|...|=+.+.
T Consensus 76 lg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~ 112 (202)
T PF08442_consen 76 LGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSIT 112 (202)
T ss_dssp TTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEE
T ss_pred hCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEE
Confidence 1 13689999998865555444
No 106
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=78.90 E-value=7.3 Score=32.45 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEecc-c--ccccccchhHHhhhhhcceEEEEecCCCCCCC------------------------------CCCceE
Q 019652 31 VVGYALTS-K--KTKSFLQPKLEGLARNKGILFVAIDQNRPLSD------------------------------QGPFDI 77 (337)
Q Consensus 31 ~VGy~l~~-k--K~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~------------------------------q~~fDv 77 (337)
+||+.|-| . |-.+-..-.|...|.++|+++....+++=.-+ ...||+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 45666654 1 22333334578888899988877777651111 127899
Q ss_pred EEEccCc---HHHHH--HHHHHHHhCCCceeeChHHHHH
Q 019652 78 VLHKLTG---KEWRQ--ILEEYRQTHPEVTVLDPPYAIQ 111 (337)
Q Consensus 78 ilhK~t~---~~~~~--~l~~y~~~~p~v~ViDp~~ai~ 111 (337)
|+-|=-- ..+.. ++-+.+ ++.|+.|||.|.+++
T Consensus 82 vlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 9888422 12221 222333 336999999999986
No 107
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=1.4 Score=44.67 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=29.0
Q ss_pred cEEEEEEEEeCCCCCeEEEEEecCCCCCC--CCccchHHHHH
Q 019652 283 RLFNLDIIREHGTRDQFYVIDINYFPGYG--KMPEYEHIFTD 322 (337)
Q Consensus 283 ~l~GvDvi~~~~tg~~~~VIDVN~fPg~~--gv~~~~~~l~~ 322 (337)
.+.|||++.+.. + .+++.|||..|.++ .+.+.+..+..
T Consensus 403 qi~gfDi~~~~k-~-~pillevnrapslr~~~~vd~e~~ll~ 442 (565)
T KOG2158|consen 403 QIIGFDIVKQRK-V-LPILLEVNRAPSLRIWKVVDVEEVLLY 442 (565)
T ss_pred EEeccchhhccc-c-chHHHHhcccccccccccCCCchhHHH
Confidence 467999998764 3 68999999999987 67776654433
No 108
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=70.59 E-value=20 Score=35.77 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCC-CcEEEeeccC-CCCCcceeeEEEeChhhhhcc-----
Q 019652 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL----- 191 (337)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l----- 191 (337)
--++|.+ .+||+|+..++.+ .++..+... .++ .|+|+|+.+- +|--.+-++-++.+.++..+.
T Consensus 8 aKelf~~-------~GiPvp~g~v~~s-~eea~~~a~--~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~l 77 (387)
T COG0045 8 AKELFAK-------YGIPVPPGYVATS-PEEAEEAAK--ELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEIL 77 (387)
T ss_pred HHHHHHH-------cCCCCCCceeeeC-HHHHHHHHH--HhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHh
Confidence 3456665 4899999888863 223333222 344 7999999654 344446688999998776542
Q ss_pred C------------CCeEEEecccCC-eeEEEEEE
Q 019652 192 E------------PPLVLQEFVNHG-VLFKVYIV 212 (337)
Q Consensus 192 ~------------~p~vvQeFI~h~-~d~KV~VI 212 (337)
. .-++++++++|- .+|=+.++
T Consensus 78 g~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv 111 (387)
T COG0045 78 GKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIV 111 (387)
T ss_pred CcccccCcCCceeeEEEEEecCCCccceEEEEEE
Confidence 2 126899999976 57766665
No 109
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=68.14 E-value=7.5 Score=37.88 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=37.2
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~ 190 (337)
||..-+.+|.+. +|++|+-. +++++ +.-|+|||.-.|- +..|-+++-+.+++.+
T Consensus 124 ~~~~~~~lLekA-------gi~~P~~~---~~Pee---------Idr~VIVK~pgAk---ggRGyFiA~s~eef~e 177 (361)
T COG1759 124 DRKLEYKLLEKA-------GLRIPKKY---KSPEE---------IDRPVIVKLPGAK---GGRGYFIASSPEEFYE 177 (361)
T ss_pred chhhHHHHHHHc-------CCCCCccc---CChHH---------cCCceEEecCCcc---CCceEEEEcCHHHHHH
Confidence 455556777754 88999754 12222 4449999966654 5889999999988765
No 110
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=67.82 E-value=82 Score=33.60 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=87.8
Q ss_pred HHhhhhhcceEEEEe-cCCCCCC--CC--------CCceEEEEccCcHHHHH-HHHHH---------------------H
Q 019652 49 LEGLARNKGILFVAI-DQNRPLS--DQ--------GPFDIVLHKLTGKEWRQ-ILEEY---------------------R 95 (337)
Q Consensus 49 l~~~a~~~Gi~~v~i-D~~~~l~--~q--------~~fDvilhK~t~~~~~~-~l~~y---------------------~ 95 (337)
|.++|++.|++...+ +++. |. +. .++|+++ |+.-=+|.. .+++. .
T Consensus 399 L~d~a~qAG~~t~~~~~ied-L~~d~~G~~~D~dg~~I~~vf-KlyPWE~~~~dira~~d~d~~~~~~f~g~~~h~~~L~ 476 (619)
T PRK10507 399 MQQALHQAGFETKILRGLDE-LRWDAAGQLIDGDGRLVNCVW-KTWAWETALDQIREVSDREFAAVPIRTGHPQNEVRLI 476 (619)
T ss_pred HHHHHHHCCCceEEecCHHH-eEECCCCcEECCCCCEeeeee-ecccHHHhhhHHhhhccchhcccccccccccchhHHH
Confidence 677899999999888 4554 21 11 2566665 433212211 11112 1
Q ss_pred H--hCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCC
Q 019652 96 Q--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (337)
Q Consensus 96 ~--~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs 173 (337)
. .++.+.+|+|+-++. +.||.- +-+|-++. + .++--.|.+... + .. + ..-..|.||+.+=
T Consensus 477 ~lL~~~~~~~iEP~Wk~l-lsNKai-LplLW~l~--p-~Hp~LLpayfe~----d--~~-l----~~~~yV~KPi~GR-- 538 (619)
T PRK10507 477 DVLLRPEVLVFEPLWTVI-PGNKAI-LPVLWSLF--P-HHRYLLDTDFTV----N--DE-L----VKTGYAVKPIAGR-- 538 (619)
T ss_pred HhhccCceEEEcccHHhh-cccHHH-HHHHHHhC--C-CCcccccccccC----C--cc-c----ccCCeEeccCCCc--
Confidence 1 126799999997654 457765 45555442 1 222334433311 1 11 1 1115999999952
Q ss_pred CcceeeEEEeChh-hhhc-----cCCCeEEEecccC----C--eeEEEEEECCEEEEE-EEec
Q 019652 174 AKSHELSLAYDQY-SLKK-----LEPPLVLQEFVNH----G--VLFKVYIVGEAIKVV-RRFS 223 (337)
Q Consensus 174 ~~sh~m~iv~~~~-~L~~-----l~~p~vvQeFI~h----~--~d~KV~VIG~~v~~~-~R~S 223 (337)
++.+|.|+.+.. .+.+ -+.+.|.|+|.+= + ..+=+|+|||+.... .|.+
T Consensus 539 -EG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 539 -CGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred -CCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 455788886622 2222 1578999999962 2 567889999987754 7765
No 111
>PLN02235 ATP citrate (pro-S)-lyase
Probab=63.85 E-value=19 Score=36.45 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=50.3
Q ss_pred CCccCCcEEEE-ecCCCChhHHHHH-cCCCC-cEEEeeccCC-CCCcceeeEEEeChhhhhcc-----CC----------
Q 019652 133 GKVDVPRQLVI-ERDASSIPDVVLK-AGLTL-PLVAKPLVAD-GSAKSHELSLAYDQYSLKKL-----EP---------- 193 (337)
Q Consensus 133 ~~I~~P~~~~~-~~~~~~~~~~l~~-~~l~f-P~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l-----~~---------- 193 (337)
.+|++|+..++ . ..++..+...+ ..|+. ++|+|+.+-. |--.+-++-++.+.++..+. +.
T Consensus 23 ~gipvP~~~v~~~-~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~ 101 (423)
T PLN02235 23 AGIDLPIRSAQVT-ESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGP 101 (423)
T ss_pred CCCCCCCCeeccC-CHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCcc
Confidence 48999999887 4 33333322222 12555 5699997654 33446778899998776542 11
Q ss_pred --CeEEEecccCCeeEEEEEE
Q 019652 194 --PLVLQEFVNHGVLFKVYIV 212 (337)
Q Consensus 194 --p~vvQeFI~h~~d~KV~VI 212 (337)
-++++++++|.++|=+-++
T Consensus 102 v~~vLVEe~v~i~~E~Ylsi~ 122 (423)
T PLN02235 102 ITTFIVEPFVPHDQEFYLSIV 122 (423)
T ss_pred EeEEEEEecCCCcceEEEEEE
Confidence 3589999998865555554
No 112
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=62.86 E-value=25 Score=35.61 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCC---CCcEEEeeccC
Q 019652 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL---TLPLVAKPLVA 170 (337)
Q Consensus 118 ~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l---~fP~VvKp~~a 170 (337)
...++|++ ++|++|+..++.+ .++..+... .+ ++|+|+|..+.
T Consensus 34 qaK~LL~~-------~GIpvp~~~va~t-~eea~~aa~--~l~~~~~pvVvKaqv~ 79 (422)
T PLN00124 34 QGAELMSK-------YGVNVPKGAAASS-LDEVKKALE--KMFPDEGEVVVKSQIL 79 (422)
T ss_pred HHHHHHHH-------cCCCCCCceeeCC-HHHHHHHHH--HhcccCCcEEEEEEec
Confidence 45667775 4899999988862 323332222 35 68999999864
No 113
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=61.38 E-value=3 Score=45.89 Aligned_cols=230 Identities=16% Similarity=0.252 Sum_probs=120.4
Q ss_pred cccchhHHhhhhhcceEEEEecCCCCCCC--CCCc----------------------eEEEEccCcHHH---------HH
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD--QGPF----------------------DIVLHKLTGKEW---------RQ 89 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~--q~~f----------------------DvilhK~t~~~~---------~~ 89 (337)
+++-..-+++-++.|+.-+.|+|+-..-. +|-- |.|+.-+.++.. ..
T Consensus 397 DYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~g 476 (1435)
T KOG0370|consen 397 DYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAG 476 (1435)
T ss_pred eeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecc
Confidence 44444477788999999999999853322 2323 333333332210 01
Q ss_pred HHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH-HcCCCCcEEEee
Q 019652 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL-KAGLTLPLVAKP 167 (337)
Q Consensus 90 ~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~-~~~l~fP~VvKp 167 (337)
.+.+ +++.|+ -|.+.+...-||-.-.+.|.+. +..+-++... +.+.+++. ...++||+|+..
T Consensus 477 vf~~-----~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~----~sie~al~aae~l~ypvivRa 540 (1435)
T KOG0370|consen 477 VFAQ-----YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAV----STIEEALEAAERLGYPVIVRA 540 (1435)
T ss_pred cccc-----cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhH----hHHHHHHHHHHhcCcHHHHHH
Confidence 2222 344444 3566777777888777777764 2222222222 12333333 346899999996
Q ss_pred ccCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCC-eeEEEEEECCEEE-EEEEecCCCCccccccCCCce
Q 019652 168 LVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHG-VLFKVYIVGEAIK-VVRRFSLPDVTKQDLSTSAGV 238 (337)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~-~d~KV~VIG~~v~-~~~R~Slp~~~~~~~~~~~g~ 238 (337)
..|=|.. |-....|+++|.++ .+.++++.=+. | ..+-.=|+.|.+- |..-.-.-|+.+-++.+.+..
T Consensus 541 ayalggl---gSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSi 616 (1435)
T KOG0370|consen 541 AYALGGL---GSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSI 616 (1435)
T ss_pred HHHhcCc---cccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCcceeeccceE
Confidence 6554332 33456789998875 44566666555 5 5555556655433 222222233333333322221
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcE-EEEEEEEeCCCCCeEEEEEecCCC
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFP 308 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l-~GvDvi~~~~tg~~~~VIDVN~fP 308 (337)
.--+ ..+++.+ ....++..|.++-+.||.-- +++-...+..+ -.|+|||||+-=
T Consensus 617 Vvap----------sqtlsd~-----ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarL 671 (1435)
T KOG0370|consen 617 VVAP----------SQTLSDE-----EYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARL 671 (1435)
T ss_pred EEee----------ccccChH-----HHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEE
Confidence 1100 0111100 12346777788888877531 23555555433 379999999643
No 114
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=45.25 E-value=23 Score=34.71 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.9
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 281 GLRLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 281 GL~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
-+.++|+|++++. +| +++|||.|.-.+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4889999999987 45 699999997654
No 115
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=44.56 E-value=82 Score=31.72 Aligned_cols=168 Identities=21% Similarity=0.276 Sum_probs=89.9
Q ss_pred ccccchhHHhhhhhcceEEEEecCCCC-CCCCC---------CceEEEEccCcHHHHHHHHHHHH--hCCCceeeChHHH
Q 019652 42 KSFLQPKLEGLARNKGILFVAIDQNRP-LSDQG---------PFDIVLHKLTGKEWRQILEEYRQ--THPEVTVLDPPYA 109 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~iD~~~~-l~~q~---------~fDvilhK~t~~~~~~~l~~y~~--~~p~v~ViDp~~a 109 (337)
......=|.++|++.|++...+++..- +.+.| ++|+++ |+.-=+|.-. ++|.+ .+.++.+|||+-+
T Consensus 189 D~~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lf-KlyPwE~~~~-e~~~~~l~~~~~~~ieP~wk 266 (397)
T PHA02117 189 DFVTIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCF-KLYPWEWMME-DEFSAEILVSQTRFIEPAWK 266 (397)
T ss_pred HHHHHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeee-ecccHHHHhh-CcchhhhhhCCcEEechhHH
Confidence 333333367788999988777666541 11223 334443 5443233211 12321 1357999999966
Q ss_pred HHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhh
Q 019652 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (337)
Q Consensus 110 i~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~ 189 (337)
+. +.||.- +-+|-++. + .++--.|.+..- +. ........ -+-..|.||+.+= .+.+|.|+.+...+.
T Consensus 267 ~l-lsnKal-LalLW~l~--p-~hp~LLpay~~~--d~-~~~~~~~~--~~~~yV~KPi~gR---EG~nV~i~~~g~~~~ 333 (397)
T PHA02117 267 MM-LSNKGL-LALLYERY--P-DCPWLVPAYVED--DF-DRENLFTL--ENPKYVSKPLLSR---EGNNIHIFEYGGESE 333 (397)
T ss_pred hH-hccHHH-HHHHHHhc--C-CCcccccccccc--cc-cccchhcc--ccCCEEeccCCCc---CCCCEEEEECCeEEe
Confidence 54 567765 34454431 1 123334443211 10 00000000 1114999999852 556788876533232
Q ss_pred c----c-CCCeEEEecccC----C--eeEEEEEECCEEEEE-EEecC
Q 019652 190 K----L-EPPLVLQEFVNH----G--VLFKVYIVGEAIKVV-RRFSL 224 (337)
Q Consensus 190 ~----l-~~p~vvQeFI~h----~--~d~KV~VIG~~v~~~-~R~Sl 224 (337)
+ + +.++|.|+|++= | ..+=+|+|||+.... .|.+.
T Consensus 334 ~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 334 DTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred ccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 2 2 578999999973 3 377889999987744 77653
No 116
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=37.62 E-value=96 Score=24.59 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=23.3
Q ss_pred cccccccccchhHHhhhhhcceEEEEecCCC
Q 019652 37 TSKKTKSFLQPKLEGLARNKGILFVAIDQNR 67 (337)
Q Consensus 37 ~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~ 67 (337)
.+.....+....+..+.+++|+++..+|.+.
T Consensus 8 ~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 8 VPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp BTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred eCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3444455555667788899999999999976
No 117
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=35.18 E-value=81 Score=26.85 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=47.4
Q ss_pred CceEEEEEEecccc-cccccchhHHhhhhhcceEEEEecCCCCCCCCC------------CceEEEEccCcHHHHHHHHH
Q 019652 27 SKLVVVGYALTSKK-TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG------------PFDIVLHKLTGKEWRQILEE 93 (337)
Q Consensus 27 ~~~~~VGy~l~~kK-~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~------------~fDvilhK~t~~~~~~~l~~ 93 (337)
-...+|+..+.+.= +.+. +|..++.+.|..++.+|.+..-...| =+|+|+.|-..... +++
T Consensus 37 l~gk~v~~lF~e~StRTR~---SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~---~~~ 110 (142)
T PF02729_consen 37 LKGKTVALLFFEPSTRTRL---SFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGA---LEE 110 (142)
T ss_dssp TTTCEEEEEESS--HHHHH---HHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHH---HHH
T ss_pred CCCCEEEEEecCCCchhhh---hHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchH---HHH
Confidence 35677887776632 2222 37889999999999999765322222 48899988766533 333
Q ss_pred HHHhCCCceeeChH
Q 019652 94 YRQTHPEVTVLDPP 107 (337)
Q Consensus 94 y~~~~p~v~ViDp~ 107 (337)
+ +++..++|||-.
T Consensus 111 ~-a~~~~vPVINa~ 123 (142)
T PF02729_consen 111 L-AEHSSVPVINAG 123 (142)
T ss_dssp H-HHHCSSEEEEEE
T ss_pred H-HHhccCCeEcCc
Confidence 3 334578999854
No 118
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=32.02 E-value=68 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=26.6
Q ss_pred HHHHHHhCCcE------EEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 274 KELRRQLGLRL------FNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 274 ~~l~~~LGL~l------~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
..+.+..|.++ =-||+++.. ++..|+||+|++-|=
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~g 219 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGSG 219 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecCC
Confidence 44566677777 559999954 457999999999883
No 119
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=31.68 E-value=83 Score=28.19 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=37.1
Q ss_pred hHHhhhhhcceEEEEecCCCCCCCCCCceEEEEcc---CcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHH
Q 019652 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL---TGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~---t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~ 118 (337)
.+-++..++|+.++.|+++.+|+ +|.+|+-=. .++...+.|.+|.+. -|.+|+.+...+..-.++..
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 36668899999999999998666 588777432 234566889999987 67898998888877777664
No 120
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=31.36 E-value=2.7e+02 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=26.6
Q ss_pred CCCeEEEecccCCeeEEEEEECC-EEEEEEEecC
Q 019652 192 EPPLVLQEFVNHGVLFKVYIVGE-AIKVVRRFSL 224 (337)
Q Consensus 192 ~~p~vvQeFI~h~~d~KV~VIG~-~v~~~~R~Sl 224 (337)
..+.++||=|. |.-|.++|-++ .+.+..|.+.
T Consensus 24 ~~ewvatEKlh-GaNfsi~~~~~~~i~~akR~~~ 56 (325)
T TIGR02307 24 LTEWVAREKIH-GTNFSIIIERDFKVTCAKRTGI 56 (325)
T ss_pred CceEEEEEEec-CcceEEEEeCCceEEEeecccc
Confidence 44889999997 88889999988 8888888854
No 121
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=30.84 E-value=29 Score=34.44 Aligned_cols=165 Identities=20% Similarity=0.206 Sum_probs=82.5
Q ss_pred eEEEEE-EecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcH---------HHHHHH-HHHHH-
Q 019652 29 LVVVGY-ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK---------EWRQIL-EEYRQ- 96 (337)
Q Consensus 29 ~~~VGy-~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~---------~~~~~l-~~y~~- 96 (337)
+.++++ ++.........-+=|.+.|.+.|++-..+-.+. +.- .-+-++.-.-+. .|...+ +.|..
T Consensus 170 ~~~~~~s~~~D~~Ed~~tv~~LqD~a~~AG~et~fl~i~~-igl--~e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~ 246 (387)
T COG0754 170 RDRMGFSICQDTAEDRGTVQYLQDCAQEAGFETEFLYIDD-IGL--GEDGQFTDLDNQVIERLFKLYPWEDMLREELAQN 246 (387)
T ss_pred cCceEEEeecChhhhhhHHHHHHHHHHhcCcccceeeehh-ccc--CccceeecCCcchHhHHHhhcCHHHHHHHHHHHH
Confidence 445555 445554444443446667778887765554433 110 012222222111 121111 22332
Q ss_pred -hCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCc
Q 019652 97 -THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 97 -~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
+.+++.+|+|+=.+ .+.||-. +-+|-+.- ++++--.|.+.... . ..+ ..---|.||+.+- .
T Consensus 247 l~~~~~~~lEPaWk~-ilsNK~l-LplLW~~f---PnHp~LL~t~F~~~--~--~~~------~~~~yv~KPl~gR---E 308 (387)
T COG0754 247 LENARTIFLEPAWKS-ILSNKAL-LPLLWERF---PNHPNLLPTYFEPD--D--EEK------LGESYVRKPLFGR---E 308 (387)
T ss_pred hcCCCcEEechhHHH-HhccccH-HHHHHHhC---CCCcccccccCCCC--c--ccc------chhhhhccccccc---c
Confidence 45789999998544 3457665 44454421 12233344433221 1 111 1112689998852 3
Q ss_pred ceeeEEEeCh-hhhhcc-----CCCeEEEecccCC-eeEEEEEECC
Q 019652 176 SHELSLAYDQ-YSLKKL-----EPPLVLQEFVNHG-VLFKVYIVGE 214 (337)
Q Consensus 176 sh~m~iv~~~-~~L~~l-----~~p~vvQeFI~h~-~d~KV~VIG~ 214 (337)
+-++.|+.+. +.+... +.+.|+|||.+-+ +.-.-++||.
T Consensus 309 GaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgS 354 (387)
T COG0754 309 GANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGS 354 (387)
T ss_pred CCCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEE
Confidence 4478998774 444443 5678999999755 4444444544
No 122
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.61 E-value=60 Score=25.63 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=33.8
Q ss_pred ccchhHHhhhhhcceEE--EEecCCCCCCCCCCceEEEEccCcHHHHH---HHHHHHHhC-CCceeeChHH
Q 019652 44 FLQPKLEGLARNKGILF--VAIDQNRPLSDQGPFDIVLHKLTGKEWRQ---ILEEYRQTH-PEVTVLDPPY 108 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~--v~iD~~~~l~~q~~fDvilhK~t~~~~~~---~l~~y~~~~-p~v~ViDp~~ 108 (337)
+.-..+.++++++|+++ ...+...--+....+|+|| .+...+. .+++..+.+ =.+.+|||-+
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvil---l~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVL---LAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEE---ECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 44456788999999865 3333322111234789998 3433333 333333332 2477788754
No 123
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.55 E-value=1.8e+02 Score=26.84 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=34.4
Q ss_pred EEEEecccc----cccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChH
Q 019652 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (337)
Q Consensus 32 VGy~l~~kK----~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~ 107 (337)
||+.++-.. +....+..+.+++++.|+++..++.... ...+.+.++.+.++.+++++..+.
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~---------------~~~~~~~i~~~~~~g~dlIi~~g~ 66 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPE---------------GADAERVLRELAAQGYDLIFGTSF 66 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCc---------------hHhHHHHHHHHHHcCCCEEEECch
Confidence 566665332 2223345577788889999988876531 223444555555555555555443
No 124
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=25.81 E-value=1.4e+02 Score=24.12 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=28.3
Q ss_pred hHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcH-HHHHHHHHHHHh
Q 019652 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-EWRQILEEYRQT 97 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~-~~~~~l~~y~~~ 97 (337)
.|+++.+.+||++.. .+ ++++.|++.|+..... ...+.+++|.+.
T Consensus 15 aF~DYl~sqgI~~~i-~~----~~~~~~~lwl~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 15 AFIDYLASQGIELQI-EP----EGQGQFALWLHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHTT--EEE-E-----SSSE--EEEES-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCeEEE-EE----CCCCceEEEEeCHHHHHHHHHHHHHHHHC
Confidence 489999999988844 33 4566799999855442 455778888775
No 125
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=24.55 E-value=1.8e+02 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=16.0
Q ss_pred hhHHhhhhhcceEEEEecCCC
Q 019652 47 PKLEGLARNKGILFVAIDQNR 67 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~ 67 (337)
.-+..+.++.|++++.++.+.
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCC
Confidence 345667788999999888764
No 126
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=23.22 E-value=2.4e+02 Score=23.62 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=38.4
Q ss_pred hHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccC---cHHHHHHHHHHHHhCCCceeeChH
Q 019652 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDPP 107 (337)
Q Consensus 48 ~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t---~~~~~~~l~~y~~~~p~v~ViDp~ 107 (337)
.+.++..+.|+.+..|+++..+. .||+|+-=.. +....+.|++|.++ .|+++.-+-
T Consensus 30 ~~~~~l~~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~~ 88 (154)
T cd03143 30 ALYRALRELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGPR 88 (154)
T ss_pred HHHHHHHHCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEecC
Confidence 46678888999999999776554 7888775322 23345777888775 556666543
No 127
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=23.15 E-value=3.5e+02 Score=26.44 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=47.7
Q ss_pred ceEEEEEEecc-cccccccchhHHhhhhhcceEEEEecCCCCCCCCC-------------CceEEEEccCcHHHHHHHHH
Q 019652 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILEE 93 (337)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~-------------~fDvilhK~t~~~~~~~l~~ 93 (337)
+..+|+-++-| +=+.+.+ |..++++.|-+++-++....-...| ..|+|+.|-..+-..+.+.+
T Consensus 45 ~gk~v~~lFFEpSTRTr~S---FE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~ 121 (316)
T COG0540 45 KGKVVANLFFEPSTRTRLS---FETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAE 121 (316)
T ss_pred cCcEEEEEEecCCCchhhh---HHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHH
Confidence 34466666665 5444443 7779999999998888876555444 48999988876644445555
Q ss_pred HHHhCCCc-eeeC
Q 019652 94 YRQTHPEV-TVLD 105 (337)
Q Consensus 94 y~~~~p~v-~ViD 105 (337)
|. ++ +|||
T Consensus 122 ~~----~~~pvIN 130 (316)
T COG0540 122 FS----GVNPVIN 130 (316)
T ss_pred hc----CCCceEE
Confidence 54 44 6887
No 128
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.11 E-value=2.4e+02 Score=26.22 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhhccCCCc-c-cCCCceEEEEEEecccccccc---cchhHHhhhhhcceEEEEecCC
Q 019652 5 KEEIEEQTREEELLSFPQ-T-QQQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQN 66 (337)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~VGy~l~~kK~~~~---~~~~l~~~a~~~Gi~~v~iD~~ 66 (337)
++.|.+-++++..-.-+. . .......+||..++.-. ..| ....+.+.|+++|+++...+..
T Consensus 35 r~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~ 100 (328)
T PRK11303 35 VEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSD 100 (328)
T ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 344445555554332222 1 13345679999886422 112 1234666888899998776553
No 129
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.77 E-value=1.3e+02 Score=26.39 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=35.3
Q ss_pred EEEEecccc--cccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHH
Q 019652 32 VGYALTSKK--TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (337)
Q Consensus 32 VGy~l~~kK--~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ 108 (337)
||+.++... .-......+.++++++|++++..+.+.. .....+.++......+..+++.+..
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVLLCNSDED---------------PEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC---------------HHHHHHHHHHHHHcCcCEEEEecCC
Confidence 566665531 1222334577788888999888766531 1122344555555566666665554
No 130
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=21.52 E-value=2.2e+02 Score=27.52 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=49.3
Q ss_pred CceEEEEEEecc-cccccccchhHHhhhhhcceEEEEecCCCCCCCCC-------------CceEEEEccCcHHHHHHHH
Q 019652 27 SKLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILE 92 (337)
Q Consensus 27 ~~~~~VGy~l~~-kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~-------------~fDvilhK~t~~~~~~~l~ 92 (337)
-...+++-.+.+ +=+.++ +|..++.+.|-..+.++.+..-...| .+|+|..|.......+.+.
T Consensus 43 L~gk~~~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a 119 (305)
T PRK00856 43 LRGKTVANLFFEPSTRTRL---SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLA 119 (305)
T ss_pred CCCcEEEEEeccCCcchHH---HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHH
Confidence 356677766654 333333 38889999999999998865211211 3899999977664433333
Q ss_pred HHHHhCCCceeeChHH
Q 019652 93 EYRQTHPEVTVLDPPY 108 (337)
Q Consensus 93 ~y~~~~p~v~ViDp~~ 108 (337)
+| ..++|||-..
T Consensus 120 ~~----~~vPVINa~~ 131 (305)
T PRK00856 120 ES----SDVPVINAGD 131 (305)
T ss_pred HH----CCCCEEECCC
Confidence 33 5799999865
No 131
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=20.39 E-value=3.9e+02 Score=23.76 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcH-HH---HHHHHHHHHh--CCCcee
Q 019652 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-EW---RQILEEYRQT--HPEVTV 103 (337)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~-~~---~~~l~~y~~~--~p~v~V 103 (337)
..|-|.-.+. .|...++.+.+++.|. ++...+. .+.+.+..+. .. ...+.++..+ .++++|
T Consensus 54 ~~viyi~~e~---~~~~~rl~~~~~~~~~-----~~~~~~~-----~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liV 120 (235)
T cd01123 54 GKAVYIDTEG---TFRPERLVQIAERFGL-----DPEEVLD-----NIYVARAYNSDHQLQLLEELEAILIESSRIKLVI 120 (235)
T ss_pred ccEEEEeCCC---CcCHHHHHHHHHHhcc-----ChHhHhc-----CEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEE
Confidence 3555665553 4566778888877776 2222111 1344454442 22 2344444443 578999
Q ss_pred eChHHHHHH
Q 019652 104 LDPPYAIQH 112 (337)
Q Consensus 104 iDp~~ai~~ 112 (337)
||++.++.+
T Consensus 121 IDSis~~~~ 129 (235)
T cd01123 121 VDSVTALFR 129 (235)
T ss_pred EeCcHHHHH
Confidence 999999864
Done!