Query 019652
Match_columns 337
No_of_seqs 188 out of 438
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.6E-61 5.6E-66 469.3 32.4 309 25-337 14-340 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 3.6E-37 1.2E-41 292.6 29.1 293 24-331 6-321 (324)
3 1i7n_A Synapsin II; synapse, p 100.0 8.7E-30 3E-34 243.0 20.8 243 50-332 32-307 (309)
4 2p0a_A Synapsin-3, synapsin II 100.0 1.8E-29 6.2E-34 243.8 21.5 243 51-333 49-325 (344)
5 3t7a_A Inositol pyrophosphate 100.0 8.5E-29 2.9E-33 233.1 20.1 271 26-331 4-313 (330)
6 1pk8_A RAT synapsin I; ATP bin 100.0 3.4E-28 1.2E-32 239.3 21.4 243 50-332 144-419 (422)
7 4eg0_A D-alanine--D-alanine li 99.9 5.8E-23 2E-27 195.0 22.0 260 29-317 13-293 (317)
8 3r5x_A D-alanine--D-alanine li 99.9 5.9E-23 2E-27 193.2 21.1 235 46-313 24-273 (307)
9 1uc8_A LYSX, lysine biosynthes 99.9 1.1E-22 3.9E-27 187.4 17.5 230 44-314 11-260 (280)
10 3se7_A VANA; alpha-beta struct 99.9 1.6E-22 5.6E-27 194.6 18.4 232 49-314 27-316 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.7E-21 5.9E-26 182.2 23.9 237 46-313 23-280 (306)
12 2i87_A D-alanine-D-alanine lig 99.9 1.1E-20 3.6E-25 183.0 19.5 236 47-313 25-316 (364)
13 1ehi_A LMDDL2, D-alanine:D-lac 99.9 3.1E-20 1.1E-24 181.0 22.3 241 47-313 25-326 (377)
14 4fu0_A D-alanine--D-alanine li 99.9 1.2E-20 4.1E-25 182.6 18.6 214 74-314 97-323 (357)
15 3e5n_A D-alanine-D-alanine lig 99.9 8.4E-20 2.9E-24 178.9 24.5 259 27-313 20-344 (386)
16 3k3p_A D-alanine--D-alanine li 99.8 5.6E-20 1.9E-24 180.1 21.5 258 28-313 36-346 (383)
17 3ln6_A Glutathione biosynthesi 99.8 2E-20 6.8E-25 197.1 19.5 229 45-313 429-727 (750)
18 3tqt_A D-alanine--D-alanine li 99.8 1.2E-19 4E-24 177.1 23.2 214 74-314 98-327 (372)
19 3i12_A D-alanine-D-alanine lig 99.8 1.3E-19 4.5E-24 175.8 22.4 211 73-314 97-326 (364)
20 1e4e_A Vancomycin/teicoplanin 99.8 7.3E-20 2.5E-24 175.6 19.2 206 74-313 90-315 (343)
21 2fb9_A D-alanine:D-alanine lig 99.8 1.5E-19 5.2E-24 172.3 20.7 207 72-314 74-296 (322)
22 3ln7_A Glutathione biosynthesi 99.8 8.4E-19 2.9E-23 184.7 21.2 233 44-313 433-733 (757)
23 2pvp_A D-alanine-D-alanine lig 99.8 1.2E-18 4.1E-23 169.6 19.5 215 74-322 107-342 (367)
24 3lwb_A D-alanine--D-alanine li 99.8 4.4E-19 1.5E-23 173.0 14.8 211 74-314 109-341 (373)
25 1gsa_A Glutathione synthetase; 99.8 5.7E-18 2E-22 158.2 17.8 236 44-328 19-313 (316)
26 3ax6_A Phosphoribosylaminoimid 99.7 7.2E-16 2.5E-20 149.3 24.7 227 46-312 13-266 (380)
27 3q2o_A Phosphoribosylaminoimid 99.7 2.4E-16 8.3E-21 153.5 20.8 239 30-311 15-282 (389)
28 3aw8_A PURK, phosphoribosylami 99.7 1.5E-15 5.2E-20 146.4 21.8 227 46-312 11-267 (369)
29 3orq_A N5-carboxyaminoimidazol 99.7 2.4E-15 8.1E-20 146.3 21.7 237 29-311 12-278 (377)
30 3vot_A L-amino acid ligase, BL 99.7 5.6E-15 1.9E-19 145.2 23.6 231 47-315 18-298 (425)
31 4dim_A Phosphoribosylglycinami 99.7 3E-15 1E-19 145.8 21.2 234 46-316 19-288 (403)
32 3k5i_A Phosphoribosyl-aminoimi 99.7 1.3E-15 4.6E-20 149.5 18.4 243 29-313 24-297 (403)
33 1kjq_A GART 2, phosphoribosylg 99.7 2.5E-15 8.6E-20 145.6 18.3 229 45-313 22-288 (391)
34 2dwc_A PH0318, 433AA long hypo 99.7 2.2E-15 7.5E-20 148.5 18.2 231 45-313 30-301 (433)
35 3eth_A Phosphoribosylaminoimid 99.6 1.1E-14 3.9E-19 141.1 21.3 225 45-312 12-247 (355)
36 2z04_A Phosphoribosylaminoimid 99.6 6.7E-16 2.3E-20 148.6 12.2 221 45-313 12-260 (365)
37 4ffl_A PYLC; amino acid, biosy 99.6 2.5E-14 8.6E-19 137.6 23.1 207 46-310 13-247 (363)
38 4e4t_A Phosphoribosylaminoimid 99.6 8.6E-15 2.9E-19 144.7 19.9 240 28-312 34-308 (419)
39 3df7_A Putative ATP-grAsp supe 99.6 8.9E-15 3E-19 138.6 16.2 180 73-311 68-252 (305)
40 3ouz_A Biotin carboxylase; str 99.6 5.7E-14 1.9E-18 139.1 18.6 175 100-311 103-300 (446)
41 2r85_A PURP protein PF1517; AT 99.6 7.7E-14 2.6E-18 131.6 18.6 227 45-310 12-290 (334)
42 1a9x_A Carbamoyl phosphate syn 99.6 7.4E-14 2.5E-18 152.6 19.6 229 43-309 579-847 (1073)
43 2pn1_A Carbamoylphosphate synt 99.6 6.2E-14 2.1E-18 132.6 15.6 168 99-310 97-275 (331)
44 2ip4_A PURD, phosphoribosylami 99.5 1.9E-13 6.5E-18 134.0 18.8 180 100-311 85-285 (417)
45 3lp8_A Phosphoribosylamine-gly 99.5 1.6E-13 5.6E-18 136.3 18.1 202 74-309 83-310 (442)
46 1a9x_A Carbamoyl phosphate syn 99.5 1.7E-13 5.7E-18 149.8 19.6 230 45-309 29-305 (1073)
47 2yrx_A Phosphoribosylglycinami 99.5 3.6E-13 1.2E-17 133.6 19.6 226 51-311 39-312 (451)
48 3mjf_A Phosphoribosylamine--gl 99.5 1.1E-13 3.6E-18 137.2 14.9 180 100-311 91-297 (431)
49 2yw2_A Phosphoribosylamine--gl 99.5 1.9E-13 6.6E-18 134.0 16.3 182 99-312 85-292 (424)
50 2dzd_A Pyruvate carboxylase; b 99.5 6.4E-13 2.2E-17 132.0 20.1 227 46-311 18-300 (461)
51 2vpq_A Acetyl-COA carboxylase; 99.5 4.5E-13 1.5E-17 132.6 18.8 177 99-311 97-296 (451)
52 3vmm_A Alanine-anticapsin liga 99.5 1.5E-12 5E-17 130.7 20.5 172 100-309 125-332 (474)
53 2xcl_A Phosphoribosylamine--gl 99.5 2.7E-13 9.3E-18 132.9 15.0 181 100-312 86-292 (422)
54 3jrx_A Acetyl-COA carboxylase 99.5 5.1E-13 1.7E-17 137.3 16.3 179 99-311 163-384 (587)
55 3glk_A Acetyl-COA carboxylase 99.5 3.2E-13 1.1E-17 137.6 14.4 179 99-311 147-368 (540)
56 1vkz_A Phosphoribosylamine--gl 99.5 9.6E-13 3.3E-17 129.2 16.8 182 102-313 93-295 (412)
57 2qk4_A Trifunctional purine bi 99.5 8.8E-13 3E-17 130.7 15.9 181 99-311 111-318 (452)
58 1ulz_A Pyruvate carboxylase N- 99.5 6.5E-13 2.2E-17 131.4 14.9 177 99-311 97-295 (451)
59 2w70_A Biotin carboxylase; lig 99.4 1.2E-12 4E-17 129.6 15.7 176 99-311 98-296 (449)
60 3u9t_A MCC alpha, methylcroton 99.4 7.7E-13 2.6E-17 138.1 12.0 227 45-310 39-321 (675)
61 3hbl_A Pyruvate carboxylase; T 99.4 7.5E-12 2.6E-16 137.3 17.8 226 46-311 16-298 (1150)
62 1w96_A ACC, acetyl-coenzyme A 99.4 7.2E-12 2.5E-16 127.8 15.1 178 101-311 158-375 (554)
63 2qf7_A Pyruvate carboxylase pr 99.3 1.3E-11 4.4E-16 135.7 17.2 178 99-311 117-316 (1165)
64 3va7_A KLLA0E08119P; carboxyla 99.3 3.1E-11 1.1E-15 133.0 17.4 227 46-310 43-324 (1236)
65 3n6r_A Propionyl-COA carboxyla 99.3 1.6E-11 5.6E-16 128.2 11.6 175 100-311 99-296 (681)
66 2pbz_A Hypothetical protein; N 98.8 4.1E-08 1.4E-12 93.7 13.9 217 46-309 13-271 (320)
67 2cqy_A Propionyl-COA carboxyla 98.8 6E-11 2.1E-15 93.9 -5.7 91 110-213 3-108 (108)
68 2r7k_A 5-formaminoimidazole-4- 98.8 1.7E-07 5.9E-12 90.8 16.7 235 31-309 20-316 (361)
69 3tig_A TTL protein; ATP-grAsp, 98.4 4.1E-06 1.4E-10 81.5 15.1 147 49-212 20-209 (380)
70 1wr2_A Hypothetical protein PH 98.3 6.8E-07 2.3E-11 81.1 5.9 93 113-215 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.6 0.00014 4.7E-09 71.2 7.9 89 117-215 6-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.5 0.00017 6E-09 70.3 8.0 92 115-216 4-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.3 0.00053 1.8E-08 67.1 8.0 91 115-215 4-123 (395)
74 2io8_A Bifunctional glutathion 96.8 0.0081 2.8E-07 61.9 12.4 172 31-223 381-600 (619)
75 2vob_A Trypanothione synthetas 91.5 2.1 7.3E-05 44.2 13.4 156 47-223 413-615 (652)
76 3n6x_A Putative glutathionylsp 91.4 0.096 3.3E-06 52.2 3.1 130 73-218 268-441 (474)
77 3mwd_A ATP-citrate synthase; A 80.1 7.7 0.00026 37.9 9.6 95 119-215 11-127 (425)
78 3pff_A ATP-citrate synthase; p 56.4 30 0.001 36.6 8.4 95 119-215 11-127 (829)
79 3nbm_A PTS system, lactose-spe 36.8 83 0.0028 24.3 6.2 81 42-123 19-103 (108)
80 3r7f_A Aspartate carbamoyltran 31.3 92 0.0032 28.8 6.6 89 28-123 35-142 (304)
81 1e2b_A Enzyme IIB-cellobiose; 30.7 21 0.00072 27.6 1.8 75 43-121 17-94 (106)
82 3gyb_A Transcriptional regulat 28.9 80 0.0027 27.1 5.6 52 27-79 3-65 (280)
83 3l49_A ABC sugar (ribose) tran 28.0 82 0.0028 27.2 5.5 65 28-107 4-70 (291)
84 2l2q_A PTS system, cellobiose- 27.5 1.4E+02 0.0048 22.6 6.1 79 43-124 18-100 (109)
85 3brq_A HTH-type transcriptiona 27.2 65 0.0022 27.8 4.7 41 26-66 16-60 (296)
86 3jy6_A Transcriptional regulat 25.3 1.1E+02 0.0037 26.3 5.7 42 26-67 4-47 (276)
87 1jx6_A LUXP protein; protein-l 24.2 1.5E+02 0.005 26.4 6.6 58 6-63 20-80 (342)
88 3huu_A Transcription regulator 23.6 58 0.002 28.6 3.7 43 25-67 18-67 (305)
89 3n6x_A Putative glutathionylsp 21.2 68 0.0023 31.7 3.8 24 281-306 141-164 (474)
90 2fv4_B Hypothetical 24.6 kDa p 20.9 2.5E+02 0.0086 20.5 6.2 52 270-329 22-76 (77)
91 3cs3_A Sugar-binding transcrip 20.5 2.9E+02 0.01 23.4 7.6 79 27-106 6-88 (277)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.6e-61 Score=469.32 Aligned_cols=309 Identities=33% Similarity=0.536 Sum_probs=260.8
Q ss_pred CCCceEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCc------------HHHHHHHH
Q 019652 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (337)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~------------~~~~~~l~ 92 (337)
-++++++|||||++||.++|++++|.++++++|+++++||+++++..|++||+||||+++ ..+++.|+
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999987 36788999
Q ss_pred HHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecC-CCChhHHHHHcCCCCcEEEeeccCC
Q 019652 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (337)
Q Consensus 93 ~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~-~~~~~~~l~~~~l~fP~VvKp~~a~ 171 (337)
+|...|||++||||+++|++|.||+.|+++|++..+..+.++|++|+|+++.+. ..++.+.+...+++||+|+||+.|+
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999999999999999999999999999999998644334568999999999743 2455665666789999999999999
Q ss_pred CCCcceeeEEEeChhhhhccCCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecC--ccccc
Q 019652 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR--VSCAA 248 (337)
Q Consensus 172 Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~--~s~~~ 248 (337)
||+ +|+|.++++.++|..++.|+|+||||+|+ +||||||||+++++++|+|+|++..+. +..++|+|.. +++++
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g 250 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPE 250 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCC
Confidence 997 99999999999999999999999999998 999999999999999999999877653 2356666654 66655
Q ss_pred ccCCCCCCCc--cccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH
Q 019652 249 ASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 326 (337)
Q Consensus 249 ~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~~~l~~~l~~ 326 (337)
........++ ....+++.++++++|.+++++||++++|||+|+++++| +|||+|||+||||+|+++|+..+.++|.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~l~~ 329 (346)
T 2q7d_A 251 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNHIAT 329 (346)
T ss_dssp CCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHHHHH
Confidence 4332211111 12345667889999999999999999999999986455 69999999999999999999999999999
Q ss_pred HHHccccccCC
Q 019652 327 LTQSRYKKKSC 337 (337)
Q Consensus 327 ~i~~~~~~~~~ 337 (337)
.+++++...+|
T Consensus 330 ~~~~~~~~~~~ 340 (346)
T 2q7d_A 330 VLQGQSTAMAA 340 (346)
T ss_dssp HHHHHHTTCBC
T ss_pred HhhccCCCccc
Confidence 99988865444
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=3.6e-37 Score=292.57 Aligned_cols=293 Identities=19% Similarity=0.343 Sum_probs=222.5
Q ss_pred cCCCceEEEEEEecccccccccchhHHhhhhhcceEE--EEecCCCCCCCCC-CceEEEEccCcH--HHHHHHHHHHHhC
Q 019652 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTH 98 (337)
Q Consensus 24 ~~~~~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~--v~iD~~~~l~~q~-~fDvilhK~t~~--~~~~~l~~y~~~~ 98 (337)
|...+..+||++..+++. ++ .+.++++++|+++ +.+|++.++..++ ++|+++++.++. .+.+.|+.+...+
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~ 81 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDH 81 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhC
Confidence 344456799999988776 44 7888999999999 9999977777666 899999999875 4567888888888
Q ss_pred CCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 99 p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
++++++|+++++..++||..+.++|+++ +|++|++..+++ .+++.+.+...+++||+|+||..++|+.++++
T Consensus 82 ~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~g 153 (324)
T 1z2n_X 82 PKVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQ 153 (324)
T ss_dssp TTSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGE
T ss_pred CCCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCcccee
Confidence 8999999999999999999999999975 799999998863 22333333444577999999999877777899
Q ss_pred eEEEeChhhhhccCCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeec----------Ccccc
Q 019652 179 LSLAYDQYSLKKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----------RVSCA 247 (337)
Q Consensus 179 m~iv~~~~~L~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~----------~~s~~ 247 (337)
+.++.+.++|..++.++++||||++. ++++|+|+|+++..+.|++.+++..++..+ ...|+++ .+++.
T Consensus 154 v~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~ 232 (324)
T 1z2n_X 154 MKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQ 232 (324)
T ss_dssp EEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHH
T ss_pred eEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhcccccccccc
Confidence 99999999999999999999999975 999999999999988898887765432111 1123322 11110
Q ss_pred c----ccCCC-CCC--CccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCccchHHH
Q 019652 248 A----ASADD-ADL--DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIF 320 (337)
Q Consensus 248 ~----~~~~~-~~~--~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~~~l 320 (337)
. +...+ ... .+......+.+.++++|.++.++||+.++|||+++++.+| ++||+|||.+|||++++++. .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~~~~-~i 310 (324)
T 1z2n_X 233 DIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKVDFD-WF 310 (324)
T ss_dssp HHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCBCHH-HH
T ss_pred ccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCCCHH-HH
Confidence 0 00000 000 0111111222578999999999999999999999974445 68999999999999999998 88
Q ss_pred HHHHHHHHHcc
Q 019652 321 TDFLLSLTQSR 331 (337)
Q Consensus 321 ~~~l~~~i~~~ 331 (337)
.++|.+.+.++
T Consensus 311 ~~~l~~~~~~~ 321 (324)
T 1z2n_X 311 VEKVALCYTEV 321 (324)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=8.7e-30 Score=242.97 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=178.0
Q ss_pred HhhhhhcceEEEEecCCCCCC-----CCC-------CceEEEEccCcHH------HHHHHHHHHHhCCCceeeChHHHHH
Q 019652 50 EGLARNKGILFVAIDQNRPLS-----DQG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQ 111 (337)
Q Consensus 50 ~~~a~~~Gi~~v~iD~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~ViDp~~ai~ 111 (337)
++.++..++++..++...++. +.| .+|++|.|.++.. ++..++.++.. |+++||++++|.
T Consensus 32 ve~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~~le~~--GvpviN~~~sI~ 109 (309)
T 1i7n_A 32 VEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYA--GLPSINSLESIY 109 (309)
T ss_dssp EEEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHHHHHHT--TCCEESCHHHHH
T ss_pred HHHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHHHHHHC--CccccCCHHHHH
Confidence 457777888888887766422 123 6899999997642 23445545555 999999999999
Q ss_pred HhccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh
Q 019652 112 HLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (337)
Q Consensus 112 ~~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (337)
+|+|| ..++++|+++++ .++|.|++.... +. .+. ...++||+|+||.. || .+.||.++.++++
T Consensus 110 ~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~~---~~~--~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~ 176 (309)
T 1i7n_A 110 NFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-NH---REM--LTLPTFPVVVKIGH--AH-SGMGKVKVENHYD 176 (309)
T ss_dssp HTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGG--SSCCCSSEEEEESS--CS-TTTTEEEECSHHH
T ss_pred HhCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-Ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEECCHHH
Confidence 99999 678888887632 245755544443 21 121 23479999999887 44 7889999999988
Q ss_pred hhcc-------CCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccc
Q 019652 188 LKKL-------EPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 260 (337)
Q Consensus 188 L~~l-------~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 260 (337)
+.++ +..+++||||+.++||||+|||+++.+++|++.. ++|+++ ++ .+..
T Consensus 177 ~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN--------~~-------~~~~---- 233 (309)
T 1i7n_A 177 FQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSIS----GNWKTN--------TG-------SAML---- 233 (309)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEESSC----TTTSCS--------CC-------CSSE----
T ss_pred HHHHHHHHhccCCeEEEEeecCCCceEEEEEECCEEEEEEEEcCC----CCCeec--------CC-------ccee----
Confidence 7542 6788999999955999999999999999999742 234432 11 0110
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeEEEEEecC--CCCCCCCcc-chHHHHHHHHHHHHccc
Q 019652 261 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRY 332 (337)
Q Consensus 261 ~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~~~~tg~~~~VIDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~ 332 (337)
...+..++.+++|.++++++ |++++|||++.+.+ | +++|+|||. +||++|.+. ....+++++.+.+++++
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~ 307 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-G-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 307 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHc
Confidence 11233456799999999999 89999999998863 4 589999999 999998764 44678888888887765
No 4
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=243.76 Aligned_cols=243 Identities=12% Similarity=0.182 Sum_probs=175.8
Q ss_pred hhhhhcceEEEEecCCCCCC-----CCC--------CceEEEEccCcHH------HHHHHHHHHHhCCCceeeChHHHHH
Q 019652 51 GLARNKGILFVAIDQNRPLS-----DQG--------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQ 111 (337)
Q Consensus 51 ~~a~~~Gi~~v~iD~~~~l~-----~q~--------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~ViDp~~ai~ 111 (337)
+.++..++++..+++..+.. +.| .+|++|.|.++.. +...++.++.. |+++||++++|.
T Consensus 49 eqa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~vl~~le~~--GvpviN~~~sI~ 126 (344)
T 2p0a_A 49 EQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYG--GLPAVNSLYSVY 126 (344)
T ss_dssp EEECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHHHHHHHHHT--TCCEESCHHHHH
T ss_pred hhhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHHHHHHHHHC--CceecCCHHHHH
Confidence 34455569998888876422 122 6899999997732 33444545555 999999999999
Q ss_pred HhccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh
Q 019652 112 HLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (337)
Q Consensus 112 ~~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (337)
+|.|| ..++++|+++++ .++|+|.+.... +..++ ...++||+|+||.. || .+.||.++.+.++
T Consensus 127 ~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~ 193 (344)
T 2p0a_A 127 NFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLD 193 (344)
T ss_dssp HTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHH
T ss_pred hhCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHH
Confidence 99999 678888887632 245754544443 22121 22479999999887 44 7889999999988
Q ss_pred hhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccc
Q 019652 188 LKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 260 (337)
Q Consensus 188 L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 260 (337)
+.+ .+..+++||||+.++||||+|||+++.+++|++.. ++|+++ ++. +..
T Consensus 194 ~~~~~~~~~~~~~~~~vQefI~~g~DiRv~VVGg~vva~~R~~~~----g~wrtN--------~~~-------~~~---- 250 (344)
T 2p0a_A 194 FQDITSVVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSIS----GNWKAN--------TGS-------AML---- 250 (344)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCEEEEEEEEEETTEEEEEEEEESS----SCSSTT--------SSS-------EEE----
T ss_pred HHHHHHHHhccCCeEEEEeccCCCccEEEEEECCEEEEEEEecCC----CCCeec--------CCc-------eEE----
Confidence 764 26788999999955999999999999999998742 234433 110 000
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeEEEEEecC--CCCCCCCccc-hHHHHHHHHHHHHcccc
Q 019652 261 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPEY-EHIFTDFLLSLTQSRYK 333 (337)
Q Consensus 261 ~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~~~~tg~~~~VIDVN~--fPg~~gv~~~-~~~l~~~l~~~i~~~~~ 333 (337)
...+..++.+++|.++++++ |++++|||++.+.+ | ++||+|||. .||++|.+.. ...+.+++.+.+.++..
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~ 325 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-G-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPM 325 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC-
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcC
Confidence 11223456799999999999 89999999998863 4 589999999 9999987753 36778888888877664
No 5
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.96 E-value=8.5e-29 Score=233.10 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=189.4
Q ss_pred CCceEEEEEEecccccccccchhHHh-hhhhcceEEEEec----CCCCCCCCCCceEEEEccCcHHHHHHHHHHHH-hCC
Q 019652 26 QSKLVVVGYALTSKKTKSFLQPKLEG-LARNKGILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ-THP 99 (337)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~~~~~~l~~-~a~~~Gi~~v~iD----~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~-~~p 99 (337)
+....+||.|--+||.+|--.+.+.+ +.+..-++++.-. ++.+.++=.-.|++|...++---.+...+|.+ +
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr-- 81 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-- 81 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH--
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh--
Confidence 45679999999999987766666544 3333335554433 23456666789999999887422344455554 5
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC--------ChhHHHH--HcCCCCcEEEeecc
Q 019652 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--------SIPDVVL--KAGLTLPLVAKPLV 169 (337)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~--------~~~~~l~--~~~l~fP~VvKp~~ 169 (337)
+.++||++.++..+.||..++++|++. +|++|+++++.++.. +..+.+. ...+++|+|.||+.
T Consensus 82 ~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~ 154 (330)
T 3t7a_A 82 NPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVS 154 (330)
T ss_dssp CCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESB
T ss_pred CCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccc
Confidence 569999999999999999999999974 899999999975431 0001111 13468999999998
Q ss_pred CCCCCcceeeEEEeChhh---h-------------------hccCCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCC
Q 019652 170 ADGSAKSHELSLAYDQYS---L-------------------KKLEPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPD 226 (337)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~---L-------------------~~l~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~ 226 (337)
| + -|+++|.+.... . ...+..+++||||+++ +|+||||||+++.++++|..|.
T Consensus 155 G--s--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~ 230 (330)
T 3t7a_A 155 A--E--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPA 230 (330)
T ss_dssp T--T--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTT
T ss_pred c--c--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCCC
Confidence 4 2 477777666521 2 1225689999999976 9999999999998664443342
Q ss_pred CccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecC
Q 019652 227 VTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 227 ~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~ 306 (337)
..++|.++ .|... .+.. .+++ ++.+++|.++++++|++++|||++++++ ++||+|||.
T Consensus 231 -~~G~~r~N-----~~gG~----~~~~-------v~Lt--~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~~V~EVNg 288 (330)
T 3t7a_A 231 -LDGKVERD-----SEGKE----VRYP-------VILN--AREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNG 288 (330)
T ss_dssp -SSCBCCBC-----TTSCB----CCEE-------CCCC--HHHHHHHHHHHHHTTBSEEEEEEEEETT---EEEEEEEEE
T ss_pred -CCCcEEEc-----CCCCc----eeee-------ecCC--HHHHHHHHHHHHHhCCceEEEEEEEECC---ccEEEEeCC
Confidence 11223321 22111 0111 1233 4459999999999999999999999852 578999999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHcc
Q 019652 307 FPGYGKMPEYEHIFTDFLLSLTQSR 331 (337)
Q Consensus 307 fPg~~gv~~~~~~l~~~l~~~i~~~ 331 (337)
+|-.++..+|+..++..|.+.+.+.
T Consensus 289 ~~fvk~~~~yyd~~a~il~~~~~~~ 313 (330)
T 3t7a_A 289 FSFVKNSMKYYDDCAKILGNIVMRE 313 (330)
T ss_dssp SCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCchhHHHHHHHHHHHHHHHH
Confidence 9999999999988888888776654
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.96 E-value=3.4e-28 Score=239.29 Aligned_cols=243 Identities=13% Similarity=0.163 Sum_probs=176.8
Q ss_pred HhhhhhcceEEEEecCCCCCCC-----CC-------CceEEEEccCcHH------HHHHHHHHHHhCCCceeeChHHHHH
Q 019652 50 EGLARNKGILFVAIDQNRPLSD-----QG-------PFDIVLHKLTGKE------WRQILEEYRQTHPEVTVLDPPYAIQ 111 (337)
Q Consensus 50 ~~~a~~~Gi~~v~iD~~~~l~~-----q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~ViDp~~ai~ 111 (337)
++.++..+|++..++...++.. .| .+|++|.|.++.. ++..++.++.. |++|||++++|.
T Consensus 144 veqa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~lE~~--GvpviNs~~sI~ 221 (422)
T 1pk8_A 144 VEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYA--GIPSVNSLHSVY 221 (422)
T ss_dssp EEEECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHHHHT--TCCEESCHHHHH
T ss_pred HHHHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHHHHC--CccccCCHHHHH
Confidence 3466777888888777664221 23 6899999997642 34445555555 999999999999
Q ss_pred HhccH----HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh
Q 019652 112 HLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (337)
Q Consensus 112 ~~~dR----~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (337)
+|+|| ..++++|+++++ .++|.|.+.... +. .+. ...++||+|+||..+ | .+.||.++.++++
T Consensus 222 ~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~~--i~~~g~PvVvKp~~G--S-~G~GV~lve~~~~ 288 (422)
T 1pk8_A 222 NFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KEM--LSSTTYPVVVKMGHA--H-SGMGKVKVDNQHD 288 (422)
T ss_dssp HTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGC--CCCSSSSEEEEESSC--C-TTTTEEEECSHHH
T ss_pred HhCCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hhh--hhccCCCEEEEeCCC--C-ceeCeEEeCCHHH
Confidence 99999 567888887632 245744444443 21 111 134789999999884 4 7889999999988
Q ss_pred hhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccc
Q 019652 188 LKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCV 260 (337)
Q Consensus 188 L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~ 260 (337)
|.. .+..+++||||+.++||||+|||+++++++|++.. ++|+++ +.. +..
T Consensus 289 l~~ii~~~~~~~~~~~vQEfI~~g~DIRv~VVGg~vva~~Rr~~~----g~WrtN--------vg~-------g~~---- 345 (422)
T 1pk8_A 289 FQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVS----GNWKTN--------TGS-------AML---- 345 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEECCCEEEEEEEEEETTEEEEEEEEESS----SCSSTT--------SSC-------EEE----
T ss_pred HHHHHHHHhccCceEEEEeecCCCceEEEEEECCEEEEEEEEcCC----CCceec--------cCc-------eee----
Confidence 764 26788999999955999999999999999998742 234443 110 000
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeEEEEEecC--CCCCCCCcc-chHHHHHHHHHHHHccc
Q 019652 261 AELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRY 332 (337)
Q Consensus 261 ~~~p~~~~~~~lA~~l~~~L-GL~l~GvDvi~~~~tg~~~~VIDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~ 332 (337)
...+..++.+++|.++++++ |++++|||++.+.+ | ++||+|||. .||++|.+. ....+.+++.+.++++.
T Consensus 346 e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 346 EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-G-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC-
T ss_pred eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhc
Confidence 01223456799999999999 89999999998863 4 589999999 999998775 33678888888888765
No 7
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.91 E-value=5.8e-23 Score=195.02 Aligned_cols=260 Identities=13% Similarity=0.091 Sum_probs=169.7
Q ss_pred eEEEEEEec-ccccccc---cchhHHhhhhhcceEEEEecCCCCCCC---CCCceEEEEccCcHHHH-HHHHHHHHhCCC
Q 019652 29 LVVVGYALT-SKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEWR-QILEEYRQTHPE 100 (337)
Q Consensus 29 ~~~VGy~l~-~kK~~~~---~~~~l~~~a~~~Gi~~v~iD~~~~l~~---q~~fDvilhK~t~~~~~-~~l~~y~~~~p~ 100 (337)
..+|+..+- .+..+.. +-..+.++.++.|++++.||.+..... ...+|+++.-+.+.... ..++...+. -|
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~g 91 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YG 91 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cC
Confidence 345666554 2333333 334577788899999999997654222 25899999988764221 133444433 27
Q ss_pred ceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH--HcCCCCcEEEeeccCCCCCcce
Q 019652 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 101 v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~--~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
++++ ++++++..++||..+.++|+++ +|++|++.++.+. ++..+... ...++||+|+||..++ +|.
T Consensus 92 ip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~ 160 (317)
T 4eg0_A 92 IRYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEG---SSV 160 (317)
T ss_dssp CEESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------
T ss_pred CCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCC---CCC
Confidence 8888 6779999999999999999975 8999999999743 33333220 1347999999998854 467
Q ss_pred eeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCccccccc
Q 019652 178 ELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 250 (337)
Q Consensus 178 ~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~ 250 (337)
++.++.++++|.+ ...++++||||++|+++.|.|+|+++..+.+... ..++++|......+..
T Consensus 161 Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i~~----------~~~~~~~~~k~~~g~~ 230 (317)
T 4eg0_A 161 AVLKVKTADALPAALSEAATHDKIVIVEKSIEGGGEYTACIAGDLDLPLIKIVP----------AGEFYDYHAKYVANDT 230 (317)
T ss_dssp CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCSSEEEEEEEETTCCCCCEEEEC-------------------------C
T ss_pred CEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCCCcEEEEEEECCcccceEEEee----------CCceechhhcccCCCe
Confidence 8899999988764 2578999999998899999999996442221111 1123343322211100
Q ss_pred --CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCCccch
Q 019652 251 --ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 317 (337)
Q Consensus 251 --~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~~ 317 (337)
..+..+++. ..+.++++|.++.++||+. ++++|++++. +| +++|+|||..||+....-++
T Consensus 231 ~~~~P~~l~~~-----~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~p 293 (317)
T 4eg0_A 231 QYLIPCGLPAE-----QETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLPP 293 (317)
T ss_dssp EEESSCSSCHH-----HHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHHH
T ss_pred eEEcCCCCCHH-----HHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHHH
Confidence 011122111 1346799999999999996 8899999985 35 69999999999998764443
No 8
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.91 E-value=5.9e-23 Score=193.18 Aligned_cols=235 Identities=14% Similarity=0.185 Sum_probs=162.5
Q ss_pred chhHHhhhhhcceEEEEecCCCC---CCCCCCceEEEEccCcHHHHH-HHHHHHHhCCCceeeCh-HHHHHHhccHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEWRQ-ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSML 120 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~---l~~q~~fDvilhK~t~~~~~~-~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~ 120 (337)
-..+.+++++.|++++.+|++.. +.+...+|+++.......+.. .++.+.+. -|++++.| ++++..++||..+.
T Consensus 24 ~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~ 102 (307)
T 3r5x_A 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISK 102 (307)
T ss_dssp HHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHH
Confidence 34577788899999999999853 333458999999987653311 23333332 37888866 99999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------CC
Q 019652 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EP 193 (337)
Q Consensus 121 ~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~ 193 (337)
++|+++ +|++|++.++.+.. +..... ...++||+|+||..++ +|.++.++.+.++|.+. +.
T Consensus 103 ~~l~~~-------Gip~p~~~~~~~~~-~~~~~~-~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~ 170 (307)
T 3r5x_A 103 KILRYE-------GIETPDWIELTKME-DLNFDE-LDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDS 170 (307)
T ss_dssp HHHHHT-------TCCCCCEEEEESSS-CCCHHH-HHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCS
T ss_pred HHHHHC-------CCCCCCEEEEeChh-hhhHHH-HHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCC
Confidence 999975 89999999997432 222211 2247899999998754 46789999999887653 68
Q ss_pred CeEEEecccCCeeEEEEEECCEEEEE-EEecCCCCccccccCCCceeeecCcc-cccccCCCCCCCccccCCCChHHHHH
Q 019652 194 PLVLQEFVNHGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVS-CAAASADDADLDPCVAELPPRPLLER 271 (337)
Q Consensus 194 p~vvQeFI~h~~d~KV~VIG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s-~~~~~~~~~~~~~~~~~~p~~~~~~~ 271 (337)
++++||||+ |++++|.|+|+++..+ .+... .++|++.... ..+....+..+++.. .+.+++
T Consensus 171 ~~lvee~i~-G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~~-----~~~i~~ 233 (307)
T 3r5x_A 171 EVVIEKYIK-GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAEL-----KERVNK 233 (307)
T ss_dssp EEEEEECCC-SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHHH-----HHHHHH
T ss_pred CEEEECCcC-CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHHH-----HHHHHH
Confidence 999999999 8999999999977422 11111 0112221111 111000111221111 246799
Q ss_pred HHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 272 LAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 272 lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
+|.++.++||+. ++++|+++++ | +++|+|||..||+.+.
T Consensus 234 ~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~ 273 (307)
T 3r5x_A 234 ASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQA 273 (307)
T ss_dssp HHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTT
T ss_pred HHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCcc
Confidence 999999999998 9999999983 4 7999999999998754
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.89 E-value=1.1e-22 Score=187.39 Aligned_cols=230 Identities=14% Similarity=0.177 Sum_probs=158.5
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCCCC-------CCCceEEEEc-cCcHHHHHHHHHHHHhCCCceeeChHHHHHHhcc
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHK-LTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHN 115 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l~~-------q~~fDvilhK-~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~d 115 (337)
.....+.++++++|++++.+|++..... ...+|+++++ ..+... ..+.++.+. -+++++++++++..++|
T Consensus 11 ~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~l~~-~g~~~~~~~~~~~~~~d 88 (280)
T 1uc8_A 11 PDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRG-LAAARYLTA-LGIPVVNRPEVIEACGD 88 (280)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHH-HHHHHHHHH-TTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhh-HHHHHHHHH-CCCceeCCHHHHHHhCC
Confidence 3445689999999999999998753321 2468955555 443322 234444443 37888999999999999
Q ss_pred HHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc----c
Q 019652 116 RQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L 191 (337)
Q Consensus 116 R~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~----l 191 (337)
|..+.++|.+. +|++|++..+.+ .+++.+.+. .++||+|+||..++| |.++.++.+.++|.+ +
T Consensus 89 K~~~~~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~---~~gv~~v~~~~el~~~~~~~ 155 (280)
T 1uc8_A 89 KWATSVALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSW---GRLLAXXXXXXXXXXXXXXK 155 (280)
T ss_dssp HHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCB---CSHHHHHHHHHC--------
T ss_pred HHHHHHHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCC---cccceecccccccchhhhhH
Confidence 99999999875 799999998852 222322222 368999999988653 567778888776653 1
Q ss_pred -------CCCeEEEecccC-CeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCC
Q 019652 192 -------EPPLVLQEFVNH-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAEL 263 (337)
Q Consensus 192 -------~~p~vvQeFI~h-~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~ 263 (337)
..++++||||+. +++++++|+|++++.+..+...++. . +++..+ ...|. .+
T Consensus 156 ~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~~~~-----~-----~~~~g~---------~~~p~--~l 214 (280)
T 1uc8_A 156 EVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWI-----T-----NTARGG---------QAENC--PL 214 (280)
T ss_dssp ----CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---------------------------------CEEC--CC
T ss_pred hhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecCCcc-----c-----cccCCc---------cccCC--CC
Confidence 478999999997 4999999999998755333211111 1 111111 00111 12
Q ss_pred CChHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeEEEEEecCCCCCCCCc
Q 019652 264 PPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 264 p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
.+.++++|.++.++||+.++|+|++++.+ +++++|||..||+.++.
T Consensus 215 --~~~~~~~~~~~~~~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 215 --TEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred --CHHHHHHHHHHHHHhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 24679999999999999999999999863 38999999999998753
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.89 E-value=1.6e-22 Score=194.60 Aligned_cols=232 Identities=18% Similarity=0.223 Sum_probs=158.5
Q ss_pred HHhhhhhcceEEEEecCCCCC--------------------------------------CCCCCceEEEEccCcHHHH-H
Q 019652 49 LEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR-Q 89 (337)
Q Consensus 49 l~~~a~~~Gi~~v~iD~~~~l--------------------------------------~~q~~fDvilhK~t~~~~~-~ 89 (337)
..++.++.|+++++||+++.- .++..+|++++-+.+..+. .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 555667889999999987632 0123689999998764221 1
Q ss_pred HHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeec
Q 019652 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 90 ~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (337)
.++.+.+. .|++++.| +.++..++||..+.++|+++ +|++|++.++.+.... ....++||+|+||.
T Consensus 107 ~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 34444433 37887765 89999999999999999975 8999999999743311 13468999999998
Q ss_pred cCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECC----EEEEEEEecCCCCccccccCCCc
Q 019652 169 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAG 237 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~----~v~~~~R~Slp~~~~~~~~~~~g 237 (337)
.++ +|.++.++.++++|.. .+.++++||||+ |+++.|.|+++ .+..+.+... ..+
T Consensus 174 ~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~E~~v~vl~~~~~~~~~~~~e~~~----------~~~ 239 (346)
T 3se7_A 174 RSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI-GTEIGCAVMGNGPELITGEVDQITL----------SHG 239 (346)
T ss_dssp SCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEEEETTEEEECCCEEECC----------C--
T ss_pred CCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC-CEEEEEEEEecCCCeEEEeeEEEec----------CCC
Confidence 855 3678999999988765 367899999999 99999999987 2322222211 124
Q ss_pred eeee----cCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 238 VFRF----PRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 238 ~~~~----~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
+|+| ......+.. ..+..+++.. .+.++++|.++.++||+ .++++|++++.+ | ++|++|||..||+
T Consensus 240 ~~d~~q~~~~ky~~~~~~~~~pa~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~vlEiN~rPG~ 312 (346)
T 3se7_A 240 FFKIHQESTPESGSDNSAVTVPADISTTS-----RSLVQDTAKAVYRALGCRGLSRVDLFLTED-G-KVVLNEVNTFPGM 312 (346)
T ss_dssp ------------CGGGSCEESSCCCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECTT-S-CEEEEEEESSCCC
T ss_pred CcCcccchhccccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEeCC-C-CEEEEEEeCCCCC
Confidence 5565 332221110 0111121111 34689999999999999 688999999863 4 6999999999999
Q ss_pred CCCc
Q 019652 311 GKMP 314 (337)
Q Consensus 311 ~gv~ 314 (337)
.+..
T Consensus 313 t~~s 316 (346)
T 3se7_A 313 TSYS 316 (346)
T ss_dssp STTC
T ss_pred Cccc
Confidence 7654
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.89 E-value=1.7e-21 Score=182.16 Aligned_cols=237 Identities=17% Similarity=0.203 Sum_probs=161.7
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCC---CCCceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSML 120 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~---q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~ 120 (337)
-..+.++++++|++++.+|.+..... ...+|+|+......... ..++...+. -+++++ ++++++..++||..+.
T Consensus 23 ~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~ 101 (306)
T 1iow_A 23 GAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGLPYTGSGVMASALSMDKLRSK 101 (306)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHH
Confidence 34688899999999999999853222 24789999987421000 112223322 277776 8899999999999999
Q ss_pred HHHHhccccCCCCCccCCcEEEEecCCCChhHH------HHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc----
Q 019652 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDV------VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---- 190 (337)
Q Consensus 121 ~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~------l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~---- 190 (337)
++|+++ +|++|++..+.+. +..+. .....++||+|+||..++ +|.++.++.+.++|..
T Consensus 102 ~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~ 169 (306)
T 1iow_A 102 LLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRL 169 (306)
T ss_dssp HHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHH
T ss_pred HHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHH
Confidence 999875 8999999988632 22210 012358999999998865 4678999999988764
Q ss_pred ---cCCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCC
Q 019652 191 ---LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPP 265 (337)
Q Consensus 191 ---l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~ 265 (337)
.+.++++||||+ |.+++|.++|+++....+.... .+++++......+.. ..+..+++. .
T Consensus 170 ~~~~~~~~lvee~i~-g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~l~~~-----~ 233 (306)
T 1iow_A 170 AFQHDEEVLIEKWLS-GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAKFLSDETQYFCPAGLEAS-----Q 233 (306)
T ss_dssp HTTTCSEEEEEECCC-CCEEEEEEETTEECCCEEEECS----------SSSSCHHHHHTCSCCEEESSCCCCHH-----H
T ss_pred HHhhCCCEEEEeCcC-CEEEEEEEECCCccceEEEEeC----------CCeEchhheecCCCeeEEcCCCCCHH-----H
Confidence 267899999999 8999999999976533332211 112222111000000 011111111 1
Q ss_pred hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 266 RPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
.+.++++|.++.++||+. ++++|++++. +| +++++|||..||+.+.
T Consensus 234 ~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 234 EANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 246789999999999996 8999999975 34 6899999999998764
No 12
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.86 E-value=1.1e-20 Score=182.97 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=154.9
Q ss_pred hhHHhhhhhcceEEEEecCCCC------------------CC-----------------CCCCceEEEEccCcHHHH-HH
Q 019652 47 PKLEGLARNKGILFVAIDQNRP------------------LS-----------------DQGPFDIVLHKLTGKEWR-QI 90 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~~------------------l~-----------------~q~~fDvilhK~t~~~~~-~~ 90 (337)
..+.++.++.|++++.||.+.. +. ....+|+|+..+.+.... ..
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed~~ 104 (364)
T 2i87_A 25 QNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGT 104 (364)
T ss_dssp HHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCTTH
T ss_pred HHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhcccccccccccccccccccccCCCEEEEeCCCCCCcCHH
Confidence 4567777888999998876531 11 123689999887432100 12
Q ss_pred HHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC------ChhHHHHHcCCCCcE
Q 019652 91 LEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS------SIPDVVLKAGLTLPL 163 (337)
Q Consensus 91 l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~------~~~~~l~~~~l~fP~ 163 (337)
++...+. -|++++.| ++++..++||..+.++|.++ +|++|++..+.+... .+.+. ...++||+
T Consensus 105 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~~--~~~~g~Pv 174 (364)
T 2i87_A 105 IQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEYEKYEHNILKLV--NDKLNYPV 174 (364)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHHHHHHHHHHHHH--HHHCCSSE
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhhcccchhHHHHH--HHhcCCCE
Confidence 3333322 27888766 89999999999999999875 799999998863210 11111 13489999
Q ss_pred EEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCE---EEEEEEecCCCCcccccc
Q 019652 164 VAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLS 233 (337)
Q Consensus 164 VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~---v~~~~R~Slp~~~~~~~~ 233 (337)
|+||..++| |.|+.++.+.++|.. .+.++++||||+ |+++.|.|+|+. +....+. .
T Consensus 175 vvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~-G~E~~v~vl~~~~~~~~~~~e~----------~ 240 (364)
T 2i87_A 175 FVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN-AREIEVAVLGNDYPEATWPGEV----------V 240 (364)
T ss_dssp EEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC-CEEEEEEEEESSSCEECCCEEE----------C
T ss_pred EEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc-CeEEEEEEEcCCCcEEeeeEEE----------e
Confidence 999988654 568999999988765 267899999999 899999999874 2111111 1
Q ss_pred CCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 234 TSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 234 ~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
...++|+|......+.. ..+..+++. ..+.++++|.++.++||+ .+++||++++. +| ++||+|||..||+
T Consensus 241 ~~~~~~~~~~k~~~g~~~~~~pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg~ 313 (364)
T 2i87_A 241 KDVAFYDYKSKYKDGKVQLQIPADLDED-----VQLTLRNMALEAFKATDCSGLVRADFFVTE-DN-QIYINETNAMPGF 313 (364)
T ss_dssp CSCCC-----------CCEESSCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred cCCCcCCHHHcccCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCCCC
Confidence 11234444332211110 011112111 134678999999999999 68899999975 35 6999999999998
Q ss_pred CCC
Q 019652 311 GKM 313 (337)
Q Consensus 311 ~gv 313 (337)
...
T Consensus 314 t~~ 316 (364)
T 2i87_A 314 TAF 316 (364)
T ss_dssp STT
T ss_pred Cch
Confidence 754
No 13
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.86 E-value=3.1e-20 Score=180.96 Aligned_cols=241 Identities=16% Similarity=0.227 Sum_probs=162.5
Q ss_pred hhHHhhh-hhcceEEEEecCCCC---C-----------------C--------------------CCCCceEEEEccCcH
Q 019652 47 PKLEGLA-RNKGILFVAIDQNRP---L-----------------S--------------------DQGPFDIVLHKLTGK 85 (337)
Q Consensus 47 ~~l~~~a-~~~Gi~~v~iD~~~~---l-----------------~--------------------~q~~fDvilhK~t~~ 85 (337)
....++. ++.|+++++||.+.. + . +...+|+||.-+.+.
T Consensus 25 ~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~ 104 (377)
T 1ehi_A 25 QNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGN 104 (377)
T ss_dssp HHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCST
T ss_pred HHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccccccccCcchhhccccCCCEEEEecCCC
Confidence 3456677 788999999987631 1 0 123689999998543
Q ss_pred HHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC---ChhHHHHHcCCC
Q 019652 86 EWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS---SIPDVVLKAGLT 160 (337)
Q Consensus 86 ~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~---~~~~~l~~~~l~ 160 (337)
... ..++...+. -|++++ .+++++..++||..+.++|+++ +|++|++.++.+..+ ...+.. ..++
T Consensus 105 ~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~--~~~g 174 (377)
T 1ehi_A 105 LGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNWSWDKIV--AELG 174 (377)
T ss_dssp TTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGCCHHHHH--HHHC
T ss_pred CCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchHHHHHHH--HhcC
Confidence 111 133444433 378888 9999999999999999999864 899999999864321 122212 2478
Q ss_pred CcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCC-eeEEEEEECCE---EEEEEEecCCCCcc
Q 019652 161 LPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHG-VLFKVYIVGEA---IKVVRRFSLPDVTK 229 (337)
Q Consensus 161 fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~-~d~KV~VIG~~---v~~~~R~Slp~~~~ 229 (337)
||+|+||..++ +|.|+.++.++++|.. .+.++++||||+ | +++.|.|+|+. +....+.......
T Consensus 175 ~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~~~~~~~~~ei~~~~~~- 249 (377)
T 1ehi_A 175 NIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGNDQPLVSEIGAHTVPNQG- 249 (377)
T ss_dssp SCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESSSCEEEEEEEEECTTSS-
T ss_pred CCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCCCcEEEeeEEEEecCCC-
Confidence 99999998855 3568999999988764 367899999999 7 99999999883 4433322111000
Q ss_pred ccccCCCceeeecCccccc-c--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEec
Q 019652 230 QDLSTSAGVFRFPRVSCAA-A--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDIN 305 (337)
Q Consensus 230 ~~~~~~~g~~~~~~~s~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN 305 (337)
...++|+|......+ . ...+..+++.. .+.++++|.++.++||+. +++||++++. +| +++|+|||
T Consensus 250 ----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEiN 318 (377)
T 1ehi_A 250 ----SGDGWYDYNNKFVDNSAVHFQIPAQLSPEV-----TKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEPN 318 (377)
T ss_dssp ----SSSCCCCHHHHTTCCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEE
T ss_pred ----CcCceeCHHhcccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEEe
Confidence 012344543322111 0 01122222111 346789999999999997 8889999975 34 68999999
Q ss_pred CCCCCCCC
Q 019652 306 YFPGYGKM 313 (337)
Q Consensus 306 ~fPg~~gv 313 (337)
..||+.+.
T Consensus 319 ~rpg~t~~ 326 (377)
T 1ehi_A 319 TLPGFTNM 326 (377)
T ss_dssp SSCCCSTT
T ss_pred CCCCCCcc
Confidence 99998765
No 14
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.86 E-value=1.2e-20 Score=182.56 Aligned_cols=214 Identities=18% Similarity=0.283 Sum_probs=144.2
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-h
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-~ 150 (337)
.+|+++.=+.+.... ..++.+.+. -|++.+ -++.++..|+||..+.++|+++ +|++|++..+.+.... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 467777666554322 144555544 367766 6789999999999999999975 8999999988642211 1
Q ss_pred hHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEEec
Q 019652 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFS 223 (337)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~S 223 (337)
.+. ....++||+|+||..++ +|.||.+|.++++|.+ .+.++++|+||+ |+++-|.|+|+....+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~-G~e~~v~vl~~~~~~~~--- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN-GFEVGCAVLGIDELIVG--- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC-SEEEEEEEEESSSEEEC---
T ss_pred HHH-HHHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC-CEEEEEEEEecCCceEE---
Confidence 111 13459999999998743 3679999999998875 367899999997 89999999987533211
Q ss_pred CCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEE
Q 019652 224 LPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFY 300 (337)
Q Consensus 224 lp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~ 300 (337)
+- .......++|++......+.. ..+..++++. .+.++++|.++.++||+. +++||++++. +| ++|
T Consensus 241 -~v---~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~-----~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~~ 309 (357)
T 4fu0_A 241 -RV---DEIELSSGFFDYTEKYTLKSSKIYMPARIDAEA-----EKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EIV 309 (357)
T ss_dssp -CC---EEEEECHHHHTSCSBCSSCCEEEESSCSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEE
T ss_pred -EE---EEEEcccccccccccccCCCceEecCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CEE
Confidence 00 001111233444443322111 1222232221 356789999999999995 7789999985 45 699
Q ss_pred EEEecCCCCCCCCc
Q 019652 301 VIDINYFPGYGKMP 314 (337)
Q Consensus 301 VIDVN~fPg~~gv~ 314 (337)
|+|||..||+....
T Consensus 310 vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 310 FNEVNTIPGFTSHS 323 (357)
T ss_dssp EEEEESSCCCSTTC
T ss_pred EEEEeCCCCCCccc
Confidence 99999999987543
No 15
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.85 E-value=8.4e-20 Score=178.85 Aligned_cols=259 Identities=13% Similarity=0.218 Sum_probs=166.5
Q ss_pred CceEEEEEEec-ccccccccchh---HHhhhhhcceEEEEecCCCCC---------------------------------
Q 019652 27 SKLVVVGYALT-SKKTKSFLQPK---LEGLARNKGILFVAIDQNRPL--------------------------------- 69 (337)
Q Consensus 27 ~~~~~VGy~l~-~kK~~~~~~~~---l~~~a~~~Gi~~v~iD~~~~l--------------------------------- 69 (337)
|+..+|+..+= .+-++..+..+ ..++.++.|+++++||+++.-
T Consensus 20 m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (386)
T 3e5n_A 20 MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLP 99 (386)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECT
T ss_pred cCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeecc
Confidence 34567777553 23334444433 556667789999999976420
Q ss_pred -------------CCCCCceEEEEccCcHHHHH-HHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCC
Q 019652 70 -------------SDQGPFDIVLHKLTGKEWRQ-ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGK 134 (337)
Q Consensus 70 -------------~~q~~fDvilhK~t~~~~~~-~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~ 134 (337)
.....+|+++.=+.+..... .++...+. -|++++ .++.++..++||..+.++|++. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G 171 (386)
T 3e5n_A 100 GAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA-------R 171 (386)
T ss_dssp TCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT-------T
T ss_pred CccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------C
Confidence 01236899998887654322 45555543 367766 6789999999999999999975 8
Q ss_pred ccCCcEEEEecCC---CChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCC
Q 019652 135 VDVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHG 204 (337)
Q Consensus 135 I~~P~~~~~~~~~---~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~ 204 (337)
|++|++.++.+.. .+..+.. ..++||+|+||..++| |.|+.++.++++|.+ .+.++++||||+ |
T Consensus 172 Ip~p~~~~~~~~~~~~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~-G 245 (386)
T 3e5n_A 172 LAVAPFVCFDRHTAAHADVDTLI--AQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA-G 245 (386)
T ss_dssp CCBCCEEEEEHHHHTTCCHHHHH--HHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC-S
T ss_pred CCCCCEEEEeCcccchhhHHHHH--HhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC-C
Confidence 9999999986321 1233222 3478999999988653 578999999988764 267899999999 8
Q ss_pred eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 019652 205 VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLG 281 (337)
Q Consensus 205 ~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG 281 (337)
+++.|.|+|+....+. ..+.+....++|+|......+. ...+..+++.. .+.++++|.++.++||
T Consensus 246 ~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg 313 (386)
T 3e5n_A 246 REIECAVLGNAVPHAS-------VCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQT-----QQRIQQIAVQAYQALG 313 (386)
T ss_dssp EEEEEEEECSSSCEEE-------EEEEECC-----------------CEESSCSSCHHH-----HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEeCCCceEE-------EeEEEEeCCcccchhcccCCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhC
Confidence 9999999988531110 0001111123455544332110 01122222111 3467899999999999
Q ss_pred Cc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 282 LR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 282 L~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
+. ++++|++++.+ | ++|++|||..||+...
T Consensus 314 ~~G~~~vDf~~~~d-g-~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 314 CAGMARVDVFLCAD-G-RIVINEVNTLPGFTRI 344 (386)
T ss_dssp CCSEEEEEEEECTT-C-CEEEEEEESSCCCSTT
T ss_pred CccEEEEEEEEECC-C-cEEEEEeECCCCCCcc
Confidence 97 78899999863 5 6999999999998754
No 16
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.85 E-value=5.6e-20 Score=180.10 Aligned_cols=258 Identities=13% Similarity=0.158 Sum_probs=160.6
Q ss_pred ceEEEEEEec-ccccccccchh---HHhhhhhcceEEEEecCCCC------------------CCCC-------------
Q 019652 28 KLVVVGYALT-SKKTKSFLQPK---LEGLARNKGILFVAIDQNRP------------------LSDQ------------- 72 (337)
Q Consensus 28 ~~~~VGy~l~-~kK~~~~~~~~---l~~~a~~~Gi~~v~iD~~~~------------------l~~q------------- 72 (337)
...+|+..+= .+-++..+..+ ..++..+.|+++++||+++. +...
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSD 115 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGG
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccc
Confidence 3446777552 23334433333 55666788999999998742 1011
Q ss_pred --CCceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCC-ccCCcEEEEecCC
Q 019652 73 --GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGK-VDVPRQLVIERDA 147 (337)
Q Consensus 73 --~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~-I~~P~~~~~~~~~ 147 (337)
..+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|+++ + |++|++..+.+..
T Consensus 116 ~~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~ 187 (383)
T 3k3p_A 116 IYEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGE 187 (383)
T ss_dssp GCCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTS
T ss_pred cccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCcc
Confidence 1579999988654221 134444443 367766 5689999999999999999975 7 9999999997432
Q ss_pred C---ChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEE
Q 019652 148 S---SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIK 217 (337)
Q Consensus 148 ~---~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~ 217 (337)
. ...+ ....++||+|+||..++ .|.++.++.++++|.+ .+.++++||||+ |+++.|.|+|+...
T Consensus 188 ~~~~~~~~--~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~-G~E~~v~vl~d~~~ 261 (383)
T 3k3p_A 188 PLESKLAE--VEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD-AREIEVGILGNTDV 261 (383)
T ss_dssp CHHHHHHH--HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEEESSSC
T ss_pred chhHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC-CeEEEEEEEeCCCe
Confidence 1 1111 12358999999998854 3778999999988764 367899999999 99999999987421
Q ss_pred EEEEecCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCC
Q 019652 218 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 294 (337)
Q Consensus 218 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~ 294 (337)
.+ + + ..++....++|+|......+.. ..++.+++. ..+.++++|.++.++||+. ++++|++++.
T Consensus 262 ~~---~-~---~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 328 (383)
T 3k3p_A 262 KT---T-L---PGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPV-----IVEKMRDYAATAFRTLGCCGLSRCDFFLTE- 328 (383)
T ss_dssp EE---C-C---CEEEC-----------------CEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred eE---E-e---eEEEecCCCccchhhcccCCCeeEEecCCCCHH-----HHHHHHHHHHHHHHHcCCceEEEEEEEEEC-
Confidence 11 0 0 0111112345666544321111 112222211 1346789999999999997 7789999986
Q ss_pred CCCeEEEEEecCCCCCCCC
Q 019652 295 TRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 295 tg~~~~VIDVN~fPg~~gv 313 (337)
+| ++||+|||..||+...
T Consensus 329 ~g-~~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 329 DG-KVYLNELNTMPGFTQW 346 (383)
T ss_dssp TC-CEEEEEEESSCCCC--
T ss_pred CC-CEEEEEeeCCCCCCcc
Confidence 35 6999999999998754
No 17
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.85 E-value=2e-20 Score=197.11 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=158.1
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCCCC---CceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSDQG---PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (337)
+.++++++|+++|++++.||++.++...+ .+|.++. ..+.-.++..++..+.||..+.+
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~ 490 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKK 490 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHH
Confidence 45679999999999999999988665422 3344332 12345677789999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEe---Chhhhhc-------c
Q 019652 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------L 191 (337)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~---~~~~L~~-------l 191 (337)
+|++. +|++|++.++.+ .++..+.+ ...++||+|+||..++ .+.||.++. +.+++.+ .
T Consensus 491 lL~~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~~ 558 (750)
T 3ln6_A 491 ILDEK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFTE 558 (750)
T ss_dssp HHHHT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHHH
T ss_pred HHHHC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 99975 899999998863 33443333 2357999999997644 366999998 7776654 3
Q ss_pred CCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCccccccC-------------------------------------
Q 019652 192 EPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST------------------------------------- 234 (337)
Q Consensus 192 ~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~------------------------------------- 234 (337)
+.++++||||+ |.+++|+|+||+++.+.++..+.+..++..+
T Consensus 559 ~~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~ 637 (750)
T 3ln6_A 559 DSAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQ 637 (750)
T ss_dssp CSEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHH
T ss_pred CCcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHH
Confidence 67899999999 8999999999999987665444322111000
Q ss_pred ---------CCce-e---eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeC-------C
Q 019652 235 ---------SAGV-F---RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREH-------G 294 (337)
Q Consensus 235 ---------~~g~-~---~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~-------~ 294 (337)
..|. + .-.|.+.++... +...+++ +.++++|.++++++|+.+.|||++.++ .
T Consensus 638 ~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~------d~td~i~--p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~ 709 (750)
T 3ln6_A 638 QGYTVNSIPPEGTKIELRRNSNISTGGDSI------DVTNTMD--PTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKD 709 (750)
T ss_dssp TTCCSSCCCCTTCEEESCSSCCTTTTCEEE------ECTTTSC--HHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTT
T ss_pred cCCCccccCCCCCEEEEeecccccCCCcee------eccccCC--HHHHHHHHHHHHHhCCCeEEEEEEecCcccccccc
Confidence 0010 0 001112111110 0001222 456999999999999999999999975 1
Q ss_pred CCCeEEEEEecCCCCCCCC
Q 019652 295 TRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 295 tg~~~~VIDVN~fPg~~gv 313 (337)
.| .++|||||..||+.+.
T Consensus 710 ~~-~~~iiEvN~~pg~~~h 727 (750)
T 3ln6_A 710 KK-NATCIELNFNPLMYMH 727 (750)
T ss_dssp TT-CCEEEEEESSCCCHHH
T ss_pred CC-CeEEEEEcCCcchhhh
Confidence 23 5799999999998644
No 18
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.85 E-value=1.2e-19 Score=177.14 Aligned_cols=214 Identities=11% Similarity=0.130 Sum_probs=139.2
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-C-
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-S- 149 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-~- 149 (337)
.+|++|+-+.+.... ..++.+.+. -|++++ .++.++..++||..+.++|+++ +|++|++..+.+... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 589999988764221 135555544 378777 4688999999999999999975 899999999964332 1
Q ss_pred hhHHHHHcCCCCc-EEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEEEEEEE
Q 019652 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAIKVVRR 221 (337)
Q Consensus 150 ~~~~l~~~~l~fP-~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R 221 (337)
.... ....++|| +|+||..++ .|.|+.++.++++|.+ .+.++++||||+ |+++.|.|+|+....
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~--- 241 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR-GREIECAVLGNGAPK--- 241 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-SEEEEEEEEESSSCE---
T ss_pred HHHH-HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC-CEEEEEEEEeCCCce---
Confidence 1111 12358999 999998754 3778999999988764 367899999999 999999999985110
Q ss_pred ecCCCCccccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCC
Q 019652 222 FSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRD 297 (337)
Q Consensus 222 ~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~ 297 (337)
. ++. +++....++|+|......+. ...+..+++.. .+.++++|.++.++||+. ++++|++++. +|
T Consensus 242 ~-~~~---~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg- 310 (372)
T 3tqt_A 242 A-SLP---GEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESV-----TKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN- 310 (372)
T ss_dssp E-CCC---EEEECC---------------CEEESCCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-
T ss_pred E-eee---EEEecCCCccchhhcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC-
Confidence 0 111 11111234566654332211 01122222111 346899999999999998 7789999986 35
Q ss_pred eEEEEEecCCCCCCCCc
Q 019652 298 QFYVIDINYFPGYGKMP 314 (337)
Q Consensus 298 ~~~VIDVN~fPg~~gv~ 314 (337)
++|++|||..||+....
T Consensus 311 ~~~vlEINt~PG~t~~S 327 (372)
T 3tqt_A 311 KVLVNEINTIPGFTNIS 327 (372)
T ss_dssp CEEEEEEESSCCCSTTC
T ss_pred cEEEEEEECCCCcCccC
Confidence 69999999999988653
No 19
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.84 E-value=1.3e-19 Score=175.79 Aligned_cols=211 Identities=13% Similarity=0.234 Sum_probs=144.2
Q ss_pred CCceEEEEccCcHHHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCC---
Q 019652 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--- 147 (337)
Q Consensus 73 ~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~--- 147 (337)
..+|+++.=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|++. +|++|++..+.+..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~ 168 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRHA 168 (364)
T ss_dssp CCCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGGG
T ss_pred CCCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccch
Confidence 3589999887653211 134455443 37887764 79999999999999999865 89999999997432
Q ss_pred CChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEE---E
Q 019652 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAI---K 217 (337)
Q Consensus 148 ~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v---~ 217 (337)
.+..+.. ..++||+|+||..++| |.|+.++.++++|.. .+.++++||||+ |+++.|.|+|+.. .
T Consensus 169 ~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 169 FSFAEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK-GREIECAVLGNDNPQAS 242 (364)
T ss_dssp CCHHHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC-SEEEEEEEEESSSCEEE
T ss_pred hhHHHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC-CeEEEEEEEeCCCceEe
Confidence 1333322 3478999999987543 578999999988764 267899999998 7999999998752 2
Q ss_pred EEEEecCCCCccccccCCCceeeecCcccccc---cCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeC
Q 019652 218 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA---SADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREH 293 (337)
Q Consensus 218 ~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~ 293 (337)
...+.. ...++|+|......+. ...+..+++.. .+.++++|.++.++||+ .++++|++++.
T Consensus 243 ~~~ei~----------~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 243 TCGEIV----------LNSEFYAYDTKYIDDNGAQVVVPAQIPSEV-----NDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEE----------CCTTCC--TTTTSGGGGCEEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred eeEEEe----------cCCCccCHHHcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 221111 1123455544332111 01122222211 34688999999999999 47789999985
Q ss_pred CCCCeEEEEEecCCCCCCCCc
Q 019652 294 GTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 294 ~tg~~~~VIDVN~fPg~~gv~ 314 (337)
+| ++|++|||..||+....
T Consensus 308 -~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-CEEEEEeeCCCCCCCCC
Confidence 35 69999999999998653
No 20
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.84 E-value=7.3e-20 Score=175.61 Aligned_cols=206 Identities=17% Similarity=0.286 Sum_probs=138.9
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
.+|+||.-+.+.... ..++...+. -+++++ .++.++..++||..+.++|+++ +|++|++..+.+.. +..
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~ 160 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPV 160 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCC
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhh
Confidence 467787776432110 123333332 378877 6799999999999999999975 89999999986432 221
Q ss_pred HHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCE--EE--EEE
Q 019652 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEA--IK--VVR 220 (337)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~--v~--~~~ 220 (337)
. ..++||+|+||..++| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+. +. ...
T Consensus 161 ~----~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~-G~E~~v~vl~~~~~~~~~~~~ 232 (343)
T 1e4e_A 161 A----ATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS-GCEVGCAVLGNSAALVVGEVD 232 (343)
T ss_dssp G----GGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC-SEEEEEEEEEETTCCEECCCE
T ss_pred h----hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC-CeEEEEEEEeCCCCeEEeeeE
Confidence 1 4589999999988653 568999999988764 367899999998 899999999764 11 111
Q ss_pred EecCCCCccccccCCCceeeecCccc----cccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeC
Q 019652 221 RFSLPDVTKQDLSTSAGVFRFPRVSC----AAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREH 293 (337)
Q Consensus 221 R~Slp~~~~~~~~~~~g~~~~~~~s~----~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~ 293 (337)
+... ..++|+|..... .+.. ..+..+++. ..+.++++|.++.++||+. ++++|++++.
T Consensus 233 ei~~----------~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 297 (343)
T 1e4e_A 233 QIRL----------QYGIFRIHQEVEPEKGSENAVITVPADLSAE-----ERGRIQETVKKIYKTLGCRGLARVDMFLQD 297 (343)
T ss_dssp EEEE----------SSSCCCGGGSSSGGGCCSSEEECSSCSSCHH-----HHHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred EEee----------CCCccCHhhcccccCCCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Confidence 2111 112344432221 1100 011111111 1346899999999999994 8899999975
Q ss_pred CCCCeEEEEEecCCCCCCCC
Q 019652 294 GTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 294 ~tg~~~~VIDVN~fPg~~gv 313 (337)
+| ++||+|||..||+...
T Consensus 298 -~g-~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 298 -NG-RIVLNEVNTLPGFTSY 315 (343)
T ss_dssp -TC-CEEEEEEESSCCCSTT
T ss_pred -CC-CEEEEEeeCCCCCCcc
Confidence 35 6899999999999754
No 21
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.84 E-value=1.5e-19 Score=172.33 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=143.9
Q ss_pred CCCceEEEEccCcHHHH-HHHHHHHHhCCCceeeC-hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC
Q 019652 72 QGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149 (337)
Q Consensus 72 q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViD-p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~ 149 (337)
...+|+||..+.+.... ..++...+. -|++++. ++.++..++||..+.++|+++ +|++|++..+++....
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 145 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEPP 145 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSCC
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchhh
Confidence 34789999998543110 123333332 2788875 499999999999999999965 8999999998643321
Q ss_pred hhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCC-eeEEEEEECCE---EEE
Q 019652 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHG-VLFKVYIVGEA---IKV 218 (337)
Q Consensus 150 ~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQeFI~h~-~d~KV~VIG~~---v~~ 218 (337)
. ..++||+|+||..++| |.|+.++.++++|... +.++++||||+ | +++.|.|+|++ +..
T Consensus 146 ---~---~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~~~~~~~ 215 (322)
T 2fb9_A 146 ---V---VPFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNVFGEASP 215 (322)
T ss_dssp ---C---CCSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSSSCEEEE
T ss_pred ---h---hccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCCCceEee
Confidence 1 1589999999988654 5689999999887652 67899999999 7 99999999984 332
Q ss_pred EEEecCCCCccccccCCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCC
Q 019652 219 VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGT 295 (337)
Q Consensus 219 ~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~t 295 (337)
..+... ..++|+|......+.. ..+..+++. ..+.++++|.++.++||+ .++++|++++ +
T Consensus 216 ~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~ 278 (322)
T 2fb9_A 216 VGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDPG-----TQETVQELALKAYKVLGVRGMARVDFFLA--E 278 (322)
T ss_dssp EEEEEE----------ECCEEETTTEEECCEEEEESSCCCCTT-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEE--T
T ss_pred eEEEee----------CCCccCHHHcccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEE--C
Confidence 222110 0123444332211100 112222211 135789999999999999 8999999998 3
Q ss_pred CCeEEEEEecCCCCCCCCc
Q 019652 296 RDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~gv~ 314 (337)
| ++||+|||..||+....
T Consensus 279 g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 279 G-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp T-EEEEEEEESSCCCSSSC
T ss_pred C-cEEEEEEECCCCCCccc
Confidence 5 69999999999998653
No 22
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.81 E-value=8.4e-19 Score=184.67 Aligned_cols=233 Identities=14% Similarity=0.151 Sum_probs=155.7
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCc-eeeChHHHHHHhccHHHHHHH
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEV-TVLDPPYAIQHLHNRQSMLQC 122 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v-~ViDp~~ai~~~~dR~~~~~~ 122 (337)
.+.+.++++|+++||+++.|+++.++...|--|.+- .+. +++ ..-++..++..+.||..+.++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~ig---------------~~~~t~~~s~~aa~~~~DK~~tk~l 496 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-YVK---------------NGNMTSHDSYISPLIMENKVVTKKV 496 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-EEE---------------TTTBCSSSBSHHHHHHHHSHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEECCCHHHHHhcccccce-eec---------------cCccCCCCHHHHHHHhcCHHHHHHH
Confidence 345678999999999999999988754332222111 110 233 345777889999999999999
Q ss_pred HHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEE----eChhhhhc-------c
Q 019652 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------L 191 (337)
Q Consensus 123 L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv----~~~~~L~~-------l 191 (337)
|++. +|++|++.++.+ .++..+. ....++||+|+||..++ ++.||.++ .+.++|.+ .
T Consensus 497 L~~~-------GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 497 LQKA-------GFNVPQSVEFTS-LEKAVAS-YALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp HHHH-------TCCCCCEEEESC-HHHHHHG-GGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHC-------CcCCCCEEEECC-HHHHHHH-HHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 9975 899999998852 2112111 11468999999998854 36789988 78877654 2
Q ss_pred CCCeEEEecccCCeeEEEEEECCEEEEEEEecCCCCcccccc--------------------------------------
Q 019652 192 EPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS-------------------------------------- 233 (337)
Q Consensus 192 ~~p~vvQeFI~h~~d~KV~VIG~~v~~~~R~Slp~~~~~~~~-------------------------------------- 233 (337)
+..+++||||+ |++++|+|+||+++.+.++..+++.-++..
T Consensus 565 ~~~vlVEefI~-G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~ 643 (757)
T 3ln7_A 565 DKEVMVEDYLV-GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKE 643 (757)
T ss_dssp CSSEEEEECCC-SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHH
T ss_pred CCcEEEEEcCC-CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHH
Confidence 67899999997 799999999999998766644432110000
Q ss_pred --------CCCcee----eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEEEEEEEeCC------C
Q 019652 234 --------TSAGVF----RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------T 295 (337)
Q Consensus 234 --------~~~g~~----~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~GvDvi~~~~------t 295 (337)
...|.. .-+|.+.++...+. ..+++ +..+++|.++++++|+.+.||||+.++- .
T Consensus 644 ~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dv------td~i~--p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~ 715 (757)
T 3ln7_A 644 QGLTIDSIPAKDQLVQLRANSNISTGGDSIDM------TDEMH--ESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPN 715 (757)
T ss_dssp HTCCSSSCCCSSCEEECCSSCCGGGTCCEEEC------TTTSC--HHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSS
T ss_pred cCCCccccCCCCCEEEeecccccccCccceec------cccCC--HHHHHHHHHHHHHhCCCEEEEEEEecCcccccccc
Confidence 001110 01122222211000 01222 4569999999999999999999999741 1
Q ss_pred CCeEEEEEecCCCCCCCC
Q 019652 296 RDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~gv 313 (337)
+..+.|||||..||+.+.
T Consensus 716 ~~~~~iiEvN~~P~~~~h 733 (757)
T 3ln7_A 716 LTSWGVIEANFNPMMMMH 733 (757)
T ss_dssp TTTCEEEEEESSCCHHHH
T ss_pred CCCeEEEEEcCCcchhhh
Confidence 124799999999996644
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.80 E-value=1.2e-18 Score=169.60 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=146.8
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCC-Ch
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~-~~ 150 (337)
.+|++|.-+.+.... ..++...+. -|++++ .++.++..++||..+.++|+++ +|++|++..+.+... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 578888887653211 124444443 378877 7799999999999999999975 899999999863321 22
Q ss_pred hHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCC-ee---EEEEEECCEEEEE
Q 019652 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHG-VL---FKVYIVGEAIKVV 219 (337)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~-~d---~KV~VIG~~v~~~ 219 (337)
. ....++||+|+||..++| |.|+.++.++++|.. .+.++++||||+ | ++ +.|+| ++++.+.
T Consensus 179 ~---~~~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~-G~~E~svi~v~v-~g~~~~~ 250 (367)
T 2pvp_A 179 L---DLMNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ-GVKEYNLAGCKI-KKDFCFS 250 (367)
T ss_dssp H---HHCCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT-TCEEEEEEEEEE-TTEEEEE
T ss_pred H---HHhccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC-CCceeeEEEEEE-CCEEEEE
Confidence 2 235689999999988653 568999999987764 367999999999 7 88 88888 8874433
Q ss_pred -EEecCCCCccccccCCCceeeecCcccccc--cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCC
Q 019652 220 -RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGT 295 (337)
Q Consensus 220 -~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~t 295 (337)
.+.. + ..++|+|......+. ...+..+++. ..+.++++|.++.++||+. ++++|++++ +
T Consensus 251 ~~ei~-~---------~~~~~d~~~ky~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~ 313 (367)
T 2pvp_A 251 YIEEP-N---------KQEFLDFKQKYLDFSRNKAPKASLSNA-----LEEQLKENFKKLYSDLFDGAIIRCDFFVI--E 313 (367)
T ss_dssp EEEET-T---------TTEEECCCCSSCCSCCCSCCCCCCCHH-----HHHHHHHHHHHHHTTTSTTCCEEEEEEEE--T
T ss_pred EEEEe-c---------CCceEcccccccCCCeeEEecCCCCHH-----HHHHHHHHHHHHHHHcCCCCEEEEEEEEE--C
Confidence 2222 1 124566544332111 0112212111 1356799999999999985 889999998 3
Q ss_pred CCeEEEEEecCCCCCCC---CccchHHHHH
Q 019652 296 RDQFYVIDINYFPGYGK---MPEYEHIFTD 322 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~g---v~~~~~~l~~ 322 (337)
| ++||+|||..||+.+ +|+|.+++..
T Consensus 314 g-~~~vlEiN~rpg~t~~s~~p~~~~l~~~ 342 (367)
T 2pvp_A 314 N-EVYLNEINPIPGSLANYLFDDFKTTLEN 342 (367)
T ss_dssp T-EEEEEEEESSCGGGGGGGSSSHHHHHHH
T ss_pred C-eEEEEEEeCCCCCCcccccCCHHHHHHH
Confidence 4 699999999999864 3444443333
No 24
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.80 E-value=4.4e-19 Score=172.95 Aligned_cols=211 Identities=16% Similarity=0.184 Sum_probs=143.3
Q ss_pred CceEEEEccCcHHHH-HHHHHHHHhCCCceeeCh-HHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCC-h
Q 019652 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-I 150 (337)
Q Consensus 74 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~ViDp-~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~-~ 150 (337)
.+|+|++=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|+++ +|++|++..+.+.... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccchh
Confidence 489999888543110 123344432 27888876 89999999999999999975 8999999999643321 1
Q ss_pred hHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCeeEEEEEECCEE-----EE
Q 019652 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGVLFKVYIVGEAI-----KV 218 (337)
Q Consensus 151 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQeFI~h~~d~KV~VIG~~v-----~~ 218 (337)
... ...++||+|+||..++| |.|+.++.++++|.. .+.++++||||+ |+++.|.|+|+.- ..
T Consensus 181 ~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~ 254 (373)
T 3lwb_A 181 RQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS-GRELECGVLEMPDGTLEAST 254 (373)
T ss_dssp HHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE-EEEEEEEEEECTTSCEEECC
T ss_pred HHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC-CeEEEEEEEECCCCceEEee
Confidence 222 33589999999988653 678999999988764 267899999999 8999999998741 11
Q ss_pred EEEecCCCCccccccCCCc----eeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEE
Q 019652 219 VRRFSLPDVTKQDLSTSAG----VFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIR 291 (337)
Q Consensus 219 ~~R~Slp~~~~~~~~~~~g----~~~~~~~s~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~ 291 (337)
..+..... ..+ +|+|......+.. ..++.+++.. .+.++++|.++.++||+ .++++|+++
T Consensus 255 ~~ei~~~~--------~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~ 321 (373)
T 3lwb_A 255 LGEIRVAG--------VRGREDSFYDFATKYLDDAAELDVPAKVDDQV-----AEAIRQLAIRAFAAIDCRGLARVDFFL 321 (373)
T ss_dssp CEEEECCS--------TTCSEESSSCHHHHHTCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred eeEEEccC--------CCCccccccchhhcccCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 11111100 012 4554432211110 0122222111 35789999999999999 588999999
Q ss_pred eCCCCCeEEEEEecCCCCCCCCc
Q 019652 292 EHGTRDQFYVIDINYFPGYGKMP 314 (337)
Q Consensus 292 ~~~tg~~~~VIDVN~fPg~~gv~ 314 (337)
+. +| + ||+|||..||+....
T Consensus 322 ~~-dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 322 TD-DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp ET-TE-E-EEEEEESSCCCSTTS
T ss_pred EC-CC-C-EEEEecCCCCCCccc
Confidence 86 35 6 999999999988643
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.78 E-value=5.7e-18 Score=158.25 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=154.0
Q ss_pred ccchhHHhhhhhcceEEEEecCCCCC-C-----------------------------CCCCceEEEEccCcH---HH---
Q 019652 44 FLQPKLEGLARNKGILFVAIDQNRPL-S-----------------------------DQGPFDIVLHKLTGK---EW--- 87 (337)
Q Consensus 44 ~~~~~l~~~a~~~Gi~~v~iD~~~~l-~-----------------------------~q~~fDvilhK~t~~---~~--- 87 (337)
.....+.++++++|++++.+|++..- . ....+|+|+.+.... ..
T Consensus 19 ~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 98 (316)
T 1gsa_A 19 DSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYA 98 (316)
T ss_dssp CHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHH
T ss_pred ChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHH
Confidence 44567889999999999999875311 0 011478999887532 11
Q ss_pred HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEee
Q 019652 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (337)
Q Consensus 88 ~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (337)
...++.+.+ -+++++|+++++..+.||+.+.++|. ++|+|..+. +.+++.+.+.. ++ |+|+||
T Consensus 99 ~~~~~~l~~--~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~--~~-p~vvKP 161 (316)
T 1gsa_A 99 TYILERAEE--KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEK--HS-DIILKP 161 (316)
T ss_dssp HHHHHHHHH--TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHH--HS-SEEEEC
T ss_pred HHHHHHHHH--cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHH--cC-CEEEEE
Confidence 122333333 37889999999999999999887643 789998885 22223332333 45 999999
Q ss_pred ccCCCCCcceeeEEEe-Chhhhhc-------c-CCCeEEEecccC--CeeEEEEEECCEEEE-E-EEecCCCCccccccC
Q 019652 168 LVADGSAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNH--GVLFKVYIVGEAIKV-V-RRFSLPDVTKQDLST 234 (337)
Q Consensus 168 ~~a~Gs~~sh~m~iv~-~~~~L~~-------l-~~p~vvQeFI~h--~~d~KV~VIG~~v~~-~-~R~Slp~~~~~~~~~ 234 (337)
..++ ++.|+.++. +.++|.. . ..++++||||+. +++++++|+|+++.. . .|.+.. +++..
T Consensus 162 ~~g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~ 234 (316)
T 1gsa_A 162 LDGM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRG 234 (316)
T ss_dssp SSCC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCC
T ss_pred CCCC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCcee
Confidence 8854 567899998 7766543 2 378999999996 599999999999875 3 444321 11111
Q ss_pred CCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH---hCCcEEEEEEEEeCCCCCeEEEEEecC-C-CC
Q 019652 235 SAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ---LGLRLFNLDIIREHGTRDQFYVIDINY-F-PG 309 (337)
Q Consensus 235 ~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~---LGL~l~GvDvi~~~~tg~~~~VIDVN~-f-Pg 309 (337)
+++..+ . ..|. ++ .+.++++|.+++++ +|+.++|+|++ | . +|+|||. + ||
T Consensus 235 -----~~~~gg---~------~~~~--~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~ 289 (316)
T 1gsa_A 235 -----NLAAGG---R------GEPR--PL--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTC 289 (316)
T ss_dssp -----CGGGTC---E------EEEE--EC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCC
T ss_pred -----EEccCC---c------cccC--CC--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcc
Confidence 111111 0 0011 11 13468899888876 59999999998 4 3 7999999 5 58
Q ss_pred CCCCc-----cchHHHHHHHHHHH
Q 019652 310 YGKMP-----EYEHIFTDFLLSLT 328 (337)
Q Consensus 310 ~~gv~-----~~~~~l~~~l~~~i 328 (337)
+..+. ++.+.+.+++...+
T Consensus 290 ~~~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 290 IREIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHT
T ss_pred hHHHHHhhCcCHHHHHHHHHHHHh
Confidence 65432 34455555555443
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.73 E-value=7.2e-16 Score=149.32 Aligned_cols=227 Identities=13% Similarity=0.147 Sum_probs=148.9
Q ss_pred chhHHhhhhhcceEEEEecCCCCC--CCC-------------------CCceEEEEccCcHHHHHHHHHHHHhCCCceee
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l--~~q-------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi 104 (337)
...+..++++.|++++.+|++..- ... ..+|+|+.-..+. ....++.+.+. |+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l~~~--gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHI-DVQTLKKLYNE--GYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCS-CHHHHHHHHHT--TCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCC-CHHHHHHHHHC--CCeEC
Confidence 456788889999999999985321 110 1356666533221 11223333333 77778
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
++++++..++||..+.++|+++ +|++|++..+++. .+ ....++||+|+||..++ -+|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~----~~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~ 154 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL----ES--DVREFGFPVVQKARKGG--YDGRGVFIIKN 154 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH----HH--HHHTTCSSEEEEESCCC-------EEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH----HH--HHHhcCCCEEEEecCCC--CCCCCeEEECC
Confidence 9999999999999999999875 8999999887521 11 22358999999998743 13678999999
Q ss_pred hhhhhcc-CCCeEEEecccCCeeEEEEEECC---EEEEEE-EecCCCCccccccCCCceeeecCcccccccCCCCCCCcc
Q 019652 185 QYSLKKL-EPPLVLQEFVNHGVLFKVYIVGE---AIKVVR-RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 259 (337)
Q Consensus 185 ~~~L~~l-~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~-R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~ 259 (337)
.++|... +.++++||||+.|.++.|.++++ ++.+.. .... +. ...+.++.. . .+..+++.
T Consensus 155 ~~el~~~~~~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~---~-----~p~~l~~~ 219 (380)
T 3ax6_A 155 EKDLENAIKGETYLEEFVEIEKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV---I-----APARIEEK 219 (380)
T ss_dssp GGGGGGCCCSSEEEEECCCEEEEEEEEEEECSSCCEEEEEEEEEC---------------CEE---E-----ESCSSCHH
T ss_pred HHHHHHHhcCCEEEEeccCCCeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE---E-----CCCCCCHH
Confidence 9988764 47899999999779999999964 444321 1111 00 001111110 0 01112111
Q ss_pred ccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 260 VAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 260 ~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
. .+.++++|.++.++||+ .++++|++++. +| +++|+|||.-||..+
T Consensus 220 ~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 220 Y-----SKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp H-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred H-----HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 1 24678999999999999 48899999985 34 689999999999754
No 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.73 E-value=2.4e-16 Score=153.51 Aligned_cols=239 Identities=12% Similarity=0.153 Sum_probs=155.3
Q ss_pred EEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCCCCCceE-EEEccCcHH-------------------HHH
Q 019652 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDI-VLHKLTGKE-------------------WRQ 89 (337)
Q Consensus 30 ~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDv-ilhK~t~~~-------------------~~~ 89 (337)
.+||..-.-. +...+.++|++.|++++.+|++..-....-.|- +.....+.. ...
T Consensus 15 k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~ 89 (389)
T 3q2o_A 15 KTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYR 89 (389)
T ss_dssp SEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHH
T ss_pred CEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHH
Confidence 3566555442 467789999999999999998642211111121 111222211 012
Q ss_pred HHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeecc
Q 019652 90 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (337)
Q Consensus 90 ~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 169 (337)
.++...+. ++ +-.+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+... .++||+|+||..
T Consensus 90 ~~~~l~~~--g~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~ 156 (389)
T 3q2o_A 90 CLQWLEKH--AY-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTT 156 (389)
T ss_dssp HHHHHHHH--SC-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESS
T ss_pred HHHHHHhh--Cc-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCC
Confidence 23333333 33 678999999999999999999875 899999998863 222333222 478999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeee
Q 019652 170 ADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRF 241 (337)
Q Consensus 170 a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~ 241 (337)
+.|+ +.+|.++.++++|.+. +.++++||||+.+.++.|.++++ ++.+. |-... . ...|.+..
T Consensus 157 ~~~~--g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~-----~~~e~--~-~~~g~~~~ 226 (389)
T 3q2o_A 157 GGYD--GKGQVVLRSEADVDEARKLANAAECILEKWVPFEKEVSVIVIRSVSGETKVF-----PVAEN--I-HVNNILHE 226 (389)
T ss_dssp CCSS--SCCEEEESSGGGHHHHHHHHHHSCEEEEECCCCSEEEEEEEEECTTCCEEEC-----CCEEE--E-EETTEEEE
T ss_pred CCCC--CCCeEEECCHHHHHHHHHhcCCCCEEEEecccCceEEEEEEEEcCCCCEEEe-----cCeee--E-EcCCceEE
Confidence 5332 6899999999988763 57999999999449999999965 33221 10000 0 01122211
Q ss_pred cCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 242 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
+ ..+..+++.. .+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.
T Consensus 227 ~--------~~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s 282 (389)
T 3q2o_A 227 S--------IVPARITEEL-----SQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHNS 282 (389)
T ss_dssp E--------EESCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGG
T ss_pred E--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCCc
Confidence 0 0012222211 356789999999999996 8889999975 34 69999999999865
No 28
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.70 E-value=1.5e-15 Score=146.44 Aligned_cols=227 Identities=11% Similarity=0.104 Sum_probs=150.3
Q ss_pred chhHHhhhhhcceEEEEecCCCCC--CCC------------------CCceEEEEccCcHHHHHHHHHHHHhCCCceeeC
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPL--SDQ------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l--~~q------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViD 105 (337)
.+.+..++++.|++++.+|++..- ... ..+|+|+.-..+.. ...++.+.+. | ++..
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~-~~~~~~l~~~--g-~~g~ 86 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVP-VEAARRLEGR--L-PLYP 86 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTCC-HHHHHHHHHH--S-CBSS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCcC-HHHHHHHHHc--C-CcCC
Confidence 345777888899999889876321 110 25677776544322 2333434344 4 7889
Q ss_pred hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeCh
Q 019652 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (337)
Q Consensus 106 p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 185 (337)
+++++..++||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..++ -++.++.++.++
T Consensus 87 ~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~ 154 (369)
T 3aw8_A 87 PAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEG--LKRVGLPALLKTRRGG--YDGKGQALVRTE 154 (369)
T ss_dssp CHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHH--HTTTCSSEEEEECCC--------EEEECSH
T ss_pred CHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHH--HHHcCCCEEEEEcCCC--CCcceEEEECCH
Confidence 999999999999999999975 899999998852 2222221 2458999999998854 035689999999
Q ss_pred hhhhcc-----CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCC-C
Q 019652 186 YSLKKL-----EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-L 256 (337)
Q Consensus 186 ~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~ 256 (337)
++|.+. ..++++||||+.|.++.|.++++ ++.+..+.. + .. ..+.++.+- .+.. +
T Consensus 155 ~el~~~~~~~~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~--~-----~~-~~~~~~~~~--------~p~~~l 218 (369)
T 3aw8_A 155 EEALEALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLVE--N-----RH-WGGILRLSL--------APAPGA 218 (369)
T ss_dssp HHHHHHHTTTCSSSEEEEECCCCSEEEEEEEEECTTSCEEECCCEE--E-----EE-ETTEEEEEE--------ESCTTC
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCCEEEEEEEEECCCCCEEEECCee--e-----ee-eCCEEEEEE--------CCCCCC
Confidence 887653 57899999999789999999974 343321000 0 00 012222100 0111 2
Q ss_pred CccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 257 DPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 257 ~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
++.. .+.++++|.++.++||+. ++++|++++. | +++++|||.-||..+
T Consensus 219 ~~~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 219 SEAL-----QKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSG 267 (369)
T ss_dssp CHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred CHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCcc
Confidence 1111 346789999999999996 7789999975 4 699999999998654
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.69 E-value=2.4e-15 Score=146.34 Aligned_cols=237 Identities=14% Similarity=0.151 Sum_probs=154.7
Q ss_pred eEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCC-C-C-------------------CceEEEEccCcHHH
Q 019652 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD-Q-G-------------------PFDIVLHKLTGKEW 87 (337)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~-q-~-------------------~fDvilhK~t~~~~ 87 (337)
..+||..-.- ..-..+..+|++.|++++.+|++..-.. + . ..|+|..-+.. ..
T Consensus 12 ~~~IlIlG~G-----~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~ 85 (377)
T 3orq_A 12 GATIGIIGGG-----QLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-IS 85 (377)
T ss_dssp TCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SC
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cC
Confidence 4455555443 2345688899999999999998642111 1 0 23444322211 11
Q ss_pred HHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEee
Q 019652 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (337)
Q Consensus 88 ~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 167 (337)
...+.+..+. . .|..++++++.++||..+.++|.++ +|++|++..+.+ .+++.+... .++||+|+||
T Consensus 86 ~~~l~~l~~~-~--~v~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp 152 (377)
T 3orq_A 86 AQQLKLLCEK-Y--NIPQGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKT 152 (377)
T ss_dssp HHHHHHHHHH-S--CCTTTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEE
T ss_pred HHHHHHHhhh-c--CCCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEe
Confidence 1233333333 2 4557889999999999999999875 899999998863 334443333 4899999999
Q ss_pred ccCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCeeEEEEEE-C--CEEEEEEEecCCCCccccccCCCcee
Q 019652 168 LVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGVLFKVYIV-G--EAIKVVRRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 168 ~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~~d~KV~VI-G--~~v~~~~R~Slp~~~~~~~~~~~g~~ 239 (337)
..++ + +++|+.++.++++|.+. +.++++||||+.++++.|.++ + +.+.+. |-.. .....+.+
T Consensus 153 ~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~-----~~~e---~~~~~g~~ 222 (377)
T 3orq_A 153 RFGG-Y-DGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFF-----PLQE---NEHRNQIL 222 (377)
T ss_dssp SSSC-C-TTTTEEEECSTTSHHHHHHHHTTSCEEEEECCCEEEEEEEEEEECGGGCEEEC-----CCEE---EEEETTEE
T ss_pred CCCC-C-CCCCeEEECCHHHHHHHHHhcCCCcEEEEccCCCCEEEEEEEEEeCCCCEEEE-----CCEe---EEEECCEE
Confidence 8742 2 57889999999887653 589999999993399999999 3 233321 1100 00011222
Q ss_pred eecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
... ..+..+ ++.+.++++|.++.++||+. +++||++++.+ | +++|+|||.-||-.
T Consensus 223 ~~~--------~~Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~-g-~~~v~EinpR~~~s 278 (377)
T 3orq_A 223 FKT--------IVPARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSN-N-QLYVNEIAPRPHNS 278 (377)
T ss_dssp EEE--------EESCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEETT-C-CEEEEEEESSCCGG
T ss_pred EEE--------ECCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCC-C-cEEEEEeeCCcCCC
Confidence 110 001111 12467899999999999997 88999999853 4 69999999999933
No 30
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.68 E-value=5.6e-15 Score=145.24 Aligned_cols=231 Identities=13% Similarity=0.137 Sum_probs=142.4
Q ss_pred hhHHhhhhhcceEEEEecCCC-CCCCC-CCceEEEE-cc-CcH-HHHHHHHHHHHh----------------------CC
Q 019652 47 PKLEGLARNKGILFVAIDQNR-PLSDQ-GPFDIVLH-KL-TGK-EWRQILEEYRQT----------------------HP 99 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD~~~-~l~~q-~~fDvilh-K~-t~~-~~~~~l~~y~~~----------------------~p 99 (337)
+...++|++.|++++.+|... ....+ ...|-.++ -. .+. ...+.+.+..++ .-
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~l 97 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEAL 97 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHc
Confidence 347789999999999997643 22222 23343332 11 121 122222222222 12
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceee
Q 019652 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (337)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 179 (337)
+++ =.++++++.++||..+.+.|+++ +|++|++..+++. +++ ....++||+|+||..+. +|.|+
T Consensus 98 glp-g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~----~~~~~g~P~vvKp~~g~---gs~Gv 161 (425)
T 3vot_A 98 NLP-GLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-ADL----ENRKLSYPLVVKPVNGF---SSQGV 161 (425)
T ss_dssp TCS-SCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-GGG----TTCCCCSSEEEEESCC--------C
T ss_pred CCC-CCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-HHH----HHhhcCCcEEEEECCCC---CCCCc
Confidence 333 25789999999999999999975 8999999998632 222 23579999999997643 57899
Q ss_pred EEEeChhhhhcc------------------CCCeEEEecccCC-eeEEEEEECCEEEEE--EEecCCCCccccccCCCce
Q 019652 180 SLAYDQYSLKKL------------------EPPLVLQEFVNHG-VLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGV 238 (337)
Q Consensus 180 ~iv~~~~~L~~l------------------~~p~vvQeFI~h~-~d~KV~VIG~~v~~~--~R~Slp~~~~~~~~~~~g~ 238 (337)
.++.++++|.+. +.++++||||+-. +.+-+++.++++.+. .++.... +.
T Consensus 162 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~~~~~~~~~~~~----------~~ 231 (425)
T 3vot_A 162 VRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVHVLSIGYKGNSK----------GP 231 (425)
T ss_dssp EEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEEEEEEEEEECCC----------CS
T ss_pred eEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEEEEeEEEEeccC----------CC
Confidence 999999887541 5689999999833 555556667776543 2222110 00
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeEEEEEecCCCCCCCCcc
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 315 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL--~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~ 315 (337)
+...... ..++.+++.. .+.+.++|.++.++||+ .++++|++++. +| ++|++|||.=||-.+++.
T Consensus 232 ~~~~~~~-----~~Pa~l~~~~-----~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~~ 298 (425)
T 3vot_A 232 FFEEGVY-----IAPAQLKEET-----RLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVSH 298 (425)
T ss_dssp BCCCCEE-----EESCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHHH
T ss_pred ccccceE-----eecccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCchH
Confidence 0000000 0012222211 34678899999999998 48889999985 45 689999999997665544
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.68 E-value=3e-15 Score=145.77 Aligned_cols=234 Identities=17% Similarity=0.154 Sum_probs=150.4
Q ss_pred chhHHhhhhhcceEEEEecCCCCC---------------C---------CCCCceEEEEccCcHHHHHHHHHHHHhCCCc
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPL---------------S---------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l---------------~---------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v 101 (337)
..+++++|++.|++++.+|...+. . +...+|+|+.--.+... ..+.+..++ -|+
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~-~~~a~~~~~-~gl 96 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI-VSLARICDK-ENL 96 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH-HHHHHHHHH-HTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH-HHHHHHHHH-cCc
Confidence 456889999999999999853211 1 12367888864222222 233333322 244
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (337)
+-.++++++.+.||..+.++|.++ +|++|++..+. +.+++.+. ...++||+|+||..+. +|.+|.+
T Consensus 97 -~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~g~---gg~Gv~~ 162 (403)
T 4dim_A 97 -VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNA--LENLKLPVIVKATDLQ---GSKGIYI 162 (403)
T ss_dssp -SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHH--HHTSCSSEEEECSCC--------CEE
T ss_pred -CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHH--HhcCCCCEEEEECCCC---CCCCEEE
Confidence 468899999999999999999876 89999998775 22222222 2358999999998754 5789999
Q ss_pred EeChhhhhcc---------CCCeEEEecccCC-eeEEEEEECCEEEEEEEecCCCCccccccCCCceeeecCcccccccC
Q 019652 182 AYDQYSLKKL---------EPPLVLQEFVNHG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 251 (337)
Q Consensus 182 v~~~~~L~~l---------~~p~vvQeFI~h~-~d~KV~VIG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~ 251 (337)
+.++++|.+. +.++++||||+.. +.+.+++.++++.+..... +.... +.+...... .
T Consensus 163 v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~--~~~~~------~~~~~~~~~-----~ 229 (403)
T 4dim_A 163 AKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHG--DETYM------SHTAVPVGH-----Y 229 (403)
T ss_dssp ESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEE--EEEEE------SSSEEEEEE-----E
T ss_pred ECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEec--ceecc------CCCCcceeE-----E
Confidence 9999887652 4789999999944 6667777788877543111 00000 000000000 0
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeEEEEEecCCCCCCCCccc
Q 019652 252 DDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 316 (337)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~--l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv~~~ 316 (337)
.+..+++.. .+.+.++|.++.++||+. .+++|+++++ | ++|++|||.-||-.+++..
T Consensus 230 ~p~~l~~~~-----~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~~~~~~ 288 (403)
T 4dim_A 230 VPLDVKDDI-----IEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGANCLPEL 288 (403)
T ss_dssp ESCCSCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCSTTHHHH
T ss_pred eCCCCCHHH-----HHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCCcHHHH
Confidence 011122111 356789999999999997 5789999973 3 6999999999997765543
No 32
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.67 E-value=1.3e-15 Score=149.52 Aligned_cols=243 Identities=14% Similarity=0.122 Sum_probs=156.5
Q ss_pred eEEEEEEecccccccccchhHHhhhhhcceEEEEecCCC--CCCCCC-CceEEEEccCcHHHHH----------------
Q 019652 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR--PLSDQG-PFDIVLHKLTGKEWRQ---------------- 89 (337)
Q Consensus 29 ~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~--~l~~q~-~fDvilhK~t~~~~~~---------------- 89 (337)
..+||..-.- ..-..+..+|++.|++++.+| +. |..... .+..+....++.....
T Consensus 24 ~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~ 97 (403)
T 3k5i_A 24 SRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHV 97 (403)
T ss_dssp CCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCC
Confidence 3455555543 355678899999999999999 43 111111 1223333333321111
Q ss_pred --HHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecC-CCChhHHHHHcCCCCcEEEe
Q 019652 90 --ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAK 166 (337)
Q Consensus 90 --~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~-~~~~~~~l~~~~l~fP~VvK 166 (337)
.+.+..++ ++++..++++++.++||..+.++|.++ +|++|++..+..+ .+++.+.. ..++||+|+|
T Consensus 98 ~~~~l~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~VvK 166 (403)
T 3k5i_A 98 DTYALEEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPLMLK 166 (403)
T ss_dssp CHHHHHHHTT--TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSEEEE
T ss_pred CHHHHHHHHc--CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCEEEE
Confidence 11122233 778899999999999999999999864 8999999988621 12222222 2478999999
Q ss_pred eccCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCeeEEEEEECCE--EEEEEEecCCCCccccccCCCcee
Q 019652 167 PLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGVLFKVYIVGEA--IKVVRRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 167 p~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG~~--v~~~~R~Slp~~~~~~~~~~~g~~ 239 (337)
|..++ .++.|+.++.++++|.+. +.++++||||+.++++.|.|+++. +.+ .|... .....+.+
T Consensus 167 p~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~~~E~sv~v~~~~~g~~~-----~p~~~---~~~~~g~~ 236 (403)
T 3k5i_A 167 SKTMA--YDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYFKMELAVIVVKTKDEVLS-----YPTVE---TVQEDSIC 236 (403)
T ss_dssp ESSSC--CTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCEEEEEEEEEEECSSCEEE-----CCCEE---EEEETTEE
T ss_pred eCCCC--cCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCCCeEEEEEEEEcCCCEEE-----eCCee---eEEeCCEE
Confidence 97643 136799999999887653 578999999995699999999762 111 11100 00011222
Q ss_pred eecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 240 RFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
... ..+.. +++.. .+.++++|.++.++||+. ++++|++++. +| +++|+|||.-||-.|.
T Consensus 237 ~~~--------~~Pa~~l~~~~-----~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~ 297 (403)
T 3k5i_A 237 KLV--------YAPARNVSDAI-----NQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGH 297 (403)
T ss_dssp EEE--------EESCSSCCHHH-----HHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGT
T ss_pred EEE--------EeCCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCc
Confidence 110 00121 22211 346789999999999996 7789999985 34 6999999999997643
No 33
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.66 E-value=2.5e-15 Score=145.58 Aligned_cols=229 Identities=12% Similarity=0.196 Sum_probs=149.0
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCC-----------------------CCCceEEEEccCcHHHHHHHHHHHHhCCCc
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v 101 (337)
...++..+++++|++++.+|.+..-.. +..+|+|+.-..+- ..+.+..+.+ -|+
T Consensus 22 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~~~l~~--~gi 98 (391)
T 1kjq_A 22 LGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDMLIQLEE--EGL 98 (391)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHHHHHHh--CCC
Confidence 346788899999999999998631110 01567776643221 1122333333 367
Q ss_pred eeeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (337)
++.+++++++.++||..+.++| .++ +|++|++..+.+ .+++.+.+. .++||+|+||..+. ++.++.
T Consensus 99 ~~~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~ 165 (391)
T 1kjq_A 99 NVVPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSS---SGKGQT 165 (391)
T ss_dssp EESSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCE
T ss_pred CcCCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCCeE
Confidence 7889999999999999999998 643 899999998852 222333222 37899999997643 578999
Q ss_pred EEeChhhhhcc-----------CCCeEEEecccCCeeEEEEEEC--CEEEEEEEecCCCCccccccCCCceeeecCcccc
Q 019652 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGVLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA 247 (337)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~~d~KV~VIG--~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~ 247 (337)
++.++++|.+. +.++++||||+.+.++.|.+++ +.+... ....+.. ..+.+. ...
T Consensus 166 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~g~~~~--~~~~~~~------~~~~~~--~~~-- 233 (391)
T 1kjq_A 166 FIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC--APVGHRQ------EDGDYR--ESW-- 233 (391)
T ss_dssp EECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTEEEEC--CCEEEEE------ETTEEE--EEE--
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCCCeEEc--cCcceEE------ECCEEE--EEE--
Confidence 99999877541 5789999999967889998884 332211 0000000 001111 000
Q ss_pred cccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 248 AASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
.+..+++.. .+.+.++|.++.++||+ .++++|++++.+ +++|+|||.-||-.+.
T Consensus 234 ----~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 234 ----QPQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp ----ECCCCCHHH-----HHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred ----eCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 011121111 34678999999999999 778899999753 5899999999996543
No 34
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.66 E-value=2.2e-15 Score=148.47 Aligned_cols=231 Identities=14% Similarity=0.181 Sum_probs=147.8
Q ss_pred cchhHHhhhhhcceEEEEecCCCCC--------------CC---------CCCceEEEEccCcHHHHHHHHHHHHhCCCc
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPL--------------SD---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEV 101 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l--------------~~---------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v 101 (337)
...++..+++++|++++.+|.+..- .+ +..+|+|+.-...-. .+.+..+.+. |+
T Consensus 30 ~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~~~l~~~--gi 106 (433)
T 2dwc_A 30 LGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDALFEFEKD--GY 106 (433)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHHHHHHhc--CC
Confidence 4466888999999999999986311 01 126788877554321 1233333333 67
Q ss_pred eeeChHHHHHHhccHHHHHHHH-HhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L-~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 180 (337)
++.+++++++.+.||..+.++| +++ +|++|++..+.+ .+++.+.+. .++||+|+||..+. ++.++.
T Consensus 107 ~~~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~ 173 (433)
T 2dwc_A 107 FVVPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSS---SGKGSY 173 (433)
T ss_dssp CBSSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------E
T ss_pred eeCCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCc---CCCCeE
Confidence 7789999999999999999998 654 899999998852 222333222 37899999997543 578999
Q ss_pred EEeChhhhhcc-----------CCCeEEEecccCCeeEEEEEEC-----CEEEEEEEecCCCCccccccCCCceeeecCc
Q 019652 181 LAYDQYSLKKL-----------EPPLVLQEFVNHGVLFKVYIVG-----EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 244 (337)
Q Consensus 181 iv~~~~~L~~l-----------~~p~vvQeFI~h~~d~KV~VIG-----~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~ 244 (337)
++.++++|.+. +.++++||||+.+.++.|.+++ +++.+..-....+.. ..+.+.- .
T Consensus 174 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~------~~~~~~~--~ 245 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQ------IDGDYHA--S 245 (433)
T ss_dssp EECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEEEEE------SSSSEEE--E
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEEecccceEE------EcCEEEE--E
Confidence 99999887642 4689999999977899998874 332111111110100 0111110 0
Q ss_pred ccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 245 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 245 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
. .+..+++.. .+.+.++|.++.++||+ .++++|++++.+ +++|+|||.-||-.+.
T Consensus 246 ~------~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 246 W------QPAEISEKA-----EREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp E------ESCCCCHHH-----HHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred E------cCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 0 011122111 34678999999999999 677899999763 5899999999996643
No 35
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.65 E-value=1.1e-14 Score=141.06 Aligned_cols=225 Identities=10% Similarity=0.057 Sum_probs=152.9
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCCC--CC-CceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLSD--QG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~~--q~-~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~ 121 (337)
..+.+..+|++.|+++ +|++..=.. .+ ..|+|..-+..-. ...++...+. + .|..+++++..++||..+-+
T Consensus 12 lg~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l~~~--~-~v~p~~~a~~~~~DK~~~k~ 85 (355)
T 3eth_A 12 LGRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQLAR--H-PAFVNRDVFPIIADRLTQKQ 85 (355)
T ss_dssp HHHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHHHHT--C-TTBTTTTHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHHHhc--C-CcCCCHHHHHHhcCHHHHHH
Confidence 3456888999999999 566542110 11 5788887664321 1233333333 4 78999999999999999999
Q ss_pred HHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC--hhhhhc--cCCCeEE
Q 019652 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVL 197 (337)
Q Consensus 122 ~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~--~~~L~~--l~~p~vv 197 (337)
+|.++ +|++|++..+++ .+++.+... .++||+|+||..+ |+ +++|+.++.+ +++|.+ ++ ++++
T Consensus 86 ~l~~~-------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~viv 152 (355)
T 3eth_A 86 LFDKL-------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIV 152 (355)
T ss_dssp HHHHT-------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEE
T ss_pred HHHHC-------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEE
Confidence 99865 899999998863 334443333 4789999999873 44 5789999999 888765 24 7999
Q ss_pred EecccCCeeEEEEEECC---EEEEEEEecCCCCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHH
Q 019652 198 QEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAK 274 (337)
Q Consensus 198 QeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~ 274 (337)
|+||+.++++-|.++++ .+.+. |-.. .. ...|.+... . .+..+++.. .+.++++|.
T Consensus 153 Ee~I~~~~Eisv~v~~~~~G~~~~~-----p~~e--~~-~~~g~~~~~---~-----~pa~l~~~~-----~~~~~~~a~ 211 (355)
T 3eth_A 153 EQGINFSGEVSLVGARGFDGSTVFY-----PLTH--NL-HQDGILRTS---V-----AFPQANAQQ-----QARAEEMLS 211 (355)
T ss_dssp EECCCCSEEEEEEEEECTTSCEEEC-----CCEE--EE-EETTEEEEE---E-----ECSSCCHHH-----HHHHHHHHH
T ss_pred EEccCCCcEEEEEEEEcCCCCEEEE-----CCEE--EE-eeCCeEEEE---E-----CCCCCCHHH-----HHHHHHHHH
Confidence 99999669999999853 33321 1100 00 011222211 0 012222221 356789999
Q ss_pred HHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 275 ELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 275 ~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
++.++||.. +++||+++++ + ++||+|||.=|+-.|
T Consensus 212 ~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~sg 247 (355)
T 3eth_A 212 AIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNSG 247 (355)
T ss_dssp HHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred HHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCCc
Confidence 999999985 7889999975 3 699999999999654
No 36
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.64 E-value=6.7e-16 Score=148.61 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=129.9
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCC--CC--------------CCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLS--DQ--------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~--~q--------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ 108 (337)
....+.++++++|++++.+|++.... .. ..+|+|+.-..+... ..+.. .+. ++.++++
T Consensus 12 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~~~-l~~----~~g~~~~ 85 (365)
T 2z04_A 12 LGWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVLEK-CES----KLIPNPQ 85 (365)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHHHH-HTT----TBSSCTH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHHHH-Hhh----hcCCCHH
Confidence 34568889999999999999864221 10 246888876543222 22332 222 7788999
Q ss_pred HHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCC-CCCcceeeEEEeChhh
Q 019652 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYS 187 (337)
Q Consensus 109 ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~-Gs~~sh~m~iv~~~~~ 187 (337)
+++.++||..+.++|+++ +|++|++..++ . +++.+.+ ..++||+|+||..++ | +.++.++.+.++
T Consensus 86 ~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~-~~~~~~~--~~~~~P~vvKp~~~~~~---g~Gv~~v~~~~e 151 (365)
T 2z04_A 86 ALYVKKSRIREKLFLKKH-------GFPVPEFLVIK-R-DEIIDAL--KSFKLPVVIKAEKLGYD---GKGQYRIKKLED 151 (365)
T ss_dssp HHHHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC--------------------
T ss_pred HHHHhhCHHHHHHHHHHc-------CCCCCCEEEEc-H-HHHHHHH--HhcCCCEEEEEcCCCcC---CCCeEEECCHHH
Confidence 999999999999999864 89999998875 2 2232222 347899999998854 4 468899999988
Q ss_pred hhcc------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEecCCCCccccccCCCceeeecCcccccccCCCCCCC
Q 019652 188 LKKL------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 257 (337)
Q Consensus 188 L~~l------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~ 257 (337)
|.+. +.++++||||+.|.++.|.++++ ++.+. ..... . ..+.++.+ ..
T Consensus 152 l~~~~~~~~~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~~--------~-~~~~~~~~-------------~~ 209 (365)
T 2z04_A 152 ANQVVKNHDKEESFIIEEFVKFEAEISCIGVRDREGKTYFYPQPFNK--------H-EEGILIYN-------------YV 209 (365)
T ss_dssp -------------CEEEECCCCSEEEEEEEEECTTCCEEECCEEEEE--------E-ETTEEEEE-------------EE
T ss_pred HHHHHHHhccCCCEEEEccCCCCEEEEEEEEECCCCCEEEECCEEEE--------E-eCCEeEEE-------------EC
Confidence 7653 46899999999779999999963 44322 11000 0 01222210 00
Q ss_pred ccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 258 PCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 258 ~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
|. .+ .+.++++|.++.++||+. ++++|++++. +| +++++|||.-||..+.
T Consensus 210 p~--~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 210 PY--AK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGH 260 (365)
T ss_dssp EE--EC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGT
T ss_pred CH--hH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCce
Confidence 11 01 356799999999999996 7889999975 34 6899999999987543
No 37
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.64 E-value=2.5e-14 Score=137.62 Aligned_cols=207 Identities=22% Similarity=0.336 Sum_probs=138.4
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCCC----------------------CCceEEEEccCcHHHHHHHHHHHHhCCCcee
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~q----------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~V 103 (337)
...+..+|++.|++++.+|.+..-... ...|+|+.=........ +.....+.-++++
T Consensus 13 g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (363)
T 4ffl_A 13 GFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPV 91 (363)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCcc
Confidence 345788999999999999986422111 14566665544332222 2233344457788
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEe
Q 019652 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (337)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 183 (337)
..++++++.++||..+.++|.++ +|++|.+. .++||+|+||..+. ++.+|.++.
T Consensus 92 g~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~~----------------~ig~P~vvKp~~g~---g~~gv~~v~ 145 (363)
T 4ffl_A 92 LFDFEAYRISRDKKKSKDYFKSI-------GVPTPQDR----------------PSKPPYFVKPPCES---SSVGARIIY 145 (363)
T ss_dssp CCCHHHHHHHTSHHHHHHHHHHT-------TCCCCCBS----------------CSSSCEEEECSSCC---TTTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHhc-------CCCCCCce----------------ecCCCEEEEECCCC---CCcCeEEec
Confidence 89999999999999999999975 78888641 37899999997644 567899999
Q ss_pred ChhhhhccCCCeEEEecccCCeeEEEEEECC--EEEEE--EEecCCCCccccccCCCceeeecCcccccccCCCCCCCcc
Q 019652 184 DQYSLKKLEPPLVLQEFVNHGVLFKVYIVGE--AIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 259 (337)
Q Consensus 184 ~~~~L~~l~~p~vvQeFI~h~~d~KV~VIG~--~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~ 259 (337)
+.+++.....++++||||. |..+-|.|+++ .+.+. .+...++ .... . .
T Consensus 146 ~~~~~~~~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~-------~----~ 197 (363)
T 4ffl_A 146 DDKDLEGLEPDTLVEEYVE-GEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC-------H----M 197 (363)
T ss_dssp ------CCCTTCEEEECCC-SEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-------E----E
T ss_pred cHHHhhhhccchhhhhhcc-CcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-------e----e
Confidence 9999999999999999997 77777777743 22221 1111000 0000 0 0
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecC-CCCC
Q 019652 260 VAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGY 310 (337)
Q Consensus 260 ~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~-fPg~ 310 (337)
....+..+.++++|.+++++||+. ++++|+++++ + ++||+|||. |||.
T Consensus 198 ~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~--~-~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 198 VTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP--K-GLRVIEIDARFPSQ 247 (363)
T ss_dssp EEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET--T-EEEEEEEECSCCSS
T ss_pred ecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC--C-eEEEEEEeCCCCCC
Confidence 011122356799999999999986 6679999985 2 599999999 8884
No 38
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.64 E-value=8.6e-15 Score=144.67 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=156.3
Q ss_pred ceEEEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCCC--------CC-------------CceEEEEccCcHH
Q 019652 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSD--------QG-------------PFDIVLHKLTGKE 86 (337)
Q Consensus 28 ~~~~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~--------q~-------------~fDvilhK~t~~~ 86 (337)
+..+||..-.- ...+.+..+|++.|++++.+|++..-.. .. ..|+|+.-+...
T Consensus 34 ~~~~IlIlG~G-----~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~~- 107 (419)
T 4e4t_A 34 PGAWLGMVGGG-----QLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENV- 107 (419)
T ss_dssp TTCEEEEECCS-----HHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTTC-
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCcC-
Confidence 34456665543 2456789999999999999997631100 01 346666332211
Q ss_pred HHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcC----CCCc
Q 019652 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----LTLP 162 (337)
Q Consensus 87 ~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~----l~fP 162 (337)
....+.. .++. .++..++++++.++||..+.++|.++ +|++|++..+++ .+++.+.. .. + ||
T Consensus 108 ~~~~~~~-l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~-~~e~~~~~--~~~~~~~-~P 173 (419)
T 4e4t_A 108 PAASLDF-LART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIES-AAALAALD--DAALDAV-LP 173 (419)
T ss_dssp CHHHHHH-HHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECS-HHHHHTSC--HHHHHTT-CS
T ss_pred CHHHHHH-HHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--Hhhcccc-CC
Confidence 1233333 3333 48899999999999999999999875 899999998862 11111111 12 7 99
Q ss_pred EEEeeccCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCeeEEEEEECC---EEEEEEEecCCCCccccccC
Q 019652 163 LVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLST 234 (337)
Q Consensus 163 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQeFI~h~~d~KV~VIG~---~v~~~~R~Slp~~~~~~~~~ 234 (337)
+|+||.. .|+ ++.|+.++.++++|.+. +.++++||||+.++++.|.|+++ .+.+. |-.. ...
T Consensus 174 ~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~-----~~~e--~~~- 243 (419)
T 4e4t_A 174 GILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAF-----PLAQ--NVH- 243 (419)
T ss_dssp EEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCEEEEEEEEEEECTTSCEEEC-----CCEE--EEE-
T ss_pred EEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCCCeEEEEEEEEcCCCCEEEE-----eCeE--EEe-
Confidence 9999973 233 57899999999888653 57899999999558999999953 22211 1000 000
Q ss_pred CCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 235 SAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 235 ~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
..+.+... . .+.. +++.. .+.++++|.++.++||+. +++||++++. +| ++||+|||.-||-.|
T Consensus 244 ~~g~~~~~---~-----~Pa~~l~~~~-----~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~sg 308 (419)
T 4e4t_A 244 HNGILALT---I-----VPAPAADTAR-----VEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNSG 308 (419)
T ss_dssp ETTEEEEE---E-----ESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGGG
T ss_pred eCCeEEEE---E-----cCCCCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCCC
Confidence 01222110 0 0111 22211 356789999999999996 7889999985 34 699999999999654
No 39
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.61 E-value=8.9e-15 Score=138.63 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=121.5
Q ss_pred CCceEEEEccCcHH-HHHHHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChh
Q 019652 73 GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (337)
Q Consensus 73 ~~fDvilhK~t~~~-~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~ 151 (337)
.++|+++.-.+.+. ..+.+.+..+. ++.++.+++++++.++||..+.+.|+ . +|++|++.+
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 37887766643322 22333333333 56889999999999999999999987 4 789999873
Q ss_pred HHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhccCCCeEEEecccCCeeEEEEEECC-EEEEEEEe-cCCCCcc
Q 019652 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGVLFKVYIVGE-AIKVVRRF-SLPDVTK 229 (337)
Q Consensus 152 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQeFI~h~~d~KV~VIG~-~v~~~~R~-Slp~~~~ 229 (337)
..++||+|+||..++ +|.++.++.+ .+.++++||||+ |.++.|.++++ .+....+. ...+
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~-G~e~sv~v~~g~~~~~~~~~~~~~~--- 191 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE-GINLSVSLAVGEDVKCLSVNEQIIN--- 191 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC-SEEEEEEEEESSSEEEEEEEEEEEE---
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC-CcEEEEEEEeCCeEEEEEEeeEecc---
Confidence 147899999998865 4567777777 678999999999 99999999954 34332211 1000
Q ss_pred ccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CC-cEEEEEEEEeCCCCCeEEEEEecCC
Q 019652 230 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GL-RLFNLDIIREHGTRDQFYVIDINYF 307 (337)
Q Consensus 230 ~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-GL-~l~GvDvi~~~~tg~~~~VIDVN~f 307 (337)
.+.+.. + ..+..+++. ..+.++++|.++.++| |+ .++|+|++++ | ++|++|||.-
T Consensus 192 --------~~~~~g----~--~~p~~l~~~-----~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 192 --------NFRYAG----A--VVPARISDE-----VKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp --------TTEEEE----E--EESCCCCHH-----HHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred --------Cceecc----c--cccCCCCHH-----HHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 011110 0 011222211 1356799999999999 95 5778999984 3 5899999999
Q ss_pred CCCC
Q 019652 308 PGYG 311 (337)
Q Consensus 308 Pg~~ 311 (337)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9974
No 40
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.58 E-value=5.7e-14 Score=139.10 Aligned_cols=175 Identities=15% Similarity=0.235 Sum_probs=120.5
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|++++ .++++++.+.||..+.++|.++ +|++|++. .+. +.+++.+.. ..++||+|+||..+. ++
T Consensus 103 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~g~---gg 169 (446)
T 3ouz_A 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAAGG---GG 169 (446)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETTCC---TT
T ss_pred CCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCC---CC
Confidence 78877 8899999999999999999875 89999986 443 222232222 347899999998754 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEe-cCCCCccccccCCCce
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGV 238 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~-Slp~~~~~~~~~~~g~ 238 (337)
.||.++.++++|.+. +.++++||||+.++++.|.|+++ ++... .|. +..
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~------------- 236 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQ------------- 236 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEE-------------
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceeeee-------------
Confidence 789999999887652 67999999999549999999964 23322 222 110
Q ss_pred eeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcE-EEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 239 FRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l-~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
..+... .... +. .+++. ..+.+.++|.++.++||+.- +++|++++.+ | ++|++|||.-||-.
T Consensus 237 -~~~~~~--~~~~-p~~~l~~~-----~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 237 -RRHQKL--IEES-PAILLDEK-----TRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQVE 300 (446)
T ss_dssp -ETTEEE--EEEE-SCTTSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCCTT
T ss_pred -ecCceE--EEEC-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCCCc
Confidence 000000 0000 11 11111 13567899999999999964 5599999863 4 69999999998743
No 41
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.57 E-value=7.7e-14 Score=131.64 Aligned_cols=227 Identities=16% Similarity=0.151 Sum_probs=134.9
Q ss_pred cchhHHhhhhhcceEEEEecCCCCC--------CC---CCC-c---------eEEEEccCcHHHHHHHHHHHHhCCCcee
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPL--------SD---QGP-F---------DIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l--------~~---q~~-f---------DvilhK~t~~~~~~~l~~y~~~~p~v~V 103 (337)
....+.++++++|++++.+|++... .+ ..+ + |+|+.-. .......++.. +.-++++
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~~-e~~~~~~~~~l--e~~g~~~ 88 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTG-SFVAHLGIELV--ENMKVPY 88 (334)
T ss_dssp THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCCT-THHHHHCHHHH--HTCCSCB
T ss_pred hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEECc-chhhhhHHHHH--HHcCCCc
Confidence 4567889999999999999987411 01 112 3 6665321 11111222222 2458888
Q ss_pred eChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEe
Q 019652 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (337)
Q Consensus 104 iDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 183 (337)
+++++++..++||..+.++|.++ +|++|++ +. +. ..+.||+|+||..++ +|.++.++.
T Consensus 89 ~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv~~v~ 146 (334)
T 2r85_A 89 FGNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGYFLAK 146 (334)
T ss_dssp BSCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEES
T ss_pred cCCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCEEEEC
Confidence 89999999999999999999865 7999998 32 21 126799999998855 467899999
Q ss_pred Chhhhhcc----------C--CCeEEEecccCCeeEEEEE----ECCEEEEE---EEecCC-C-C---ccc-cccCCCce
Q 019652 184 DQYSLKKL----------E--PPLVLQEFVNHGVLFKVYI----VGEAIKVV---RRFSLP-D-V---TKQ-DLSTSAGV 238 (337)
Q Consensus 184 ~~~~L~~l----------~--~p~vvQeFI~h~~d~KV~V----IG~~v~~~---~R~Slp-~-~---~~~-~~~~~~g~ 238 (337)
++++|... + .++++||||+ |..+-+.+ +++++.+. .|.... + + ... .+....+.
T Consensus 147 ~~~el~~~~~~~~~~~~~~~~~~~lvee~i~-G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 225 (334)
T 2r85_A 147 DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL-GVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDI 225 (334)
T ss_dssp SHHHHHHHHHHHHCCCSGGGCCSEEEEECCC-CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHhhcccCCCCcEEEEeccC-CceeEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccCC
Confidence 99877542 2 7899999999 53333211 12222111 111100 0 0 000 00000000
Q ss_pred eeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC------CcEEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 239 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG------LRLFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LG------L~l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
. + ... +.. +..+++. ..+.++++|.++.++|| ..++++|++++. +| +++|+|||.-||-
T Consensus 226 ~-~--~~~-g~~--p~~l~~~-----~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 226 T-Y--TVI-GNI--PIVLRES-----LLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp C-E--EEE-EEE--ECCCCGG-----GHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred c-e--eee-CCC--CcccCHH-----HHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 0 0 000 000 1112111 13567999999999994 567789999975 34 6899999998886
No 42
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.56 E-value=7.4e-14 Score=152.55 Aligned_cols=229 Identities=16% Similarity=0.254 Sum_probs=141.6
Q ss_pred cccchhHHhhhhhcceEEEEecCCCCCCC--C----------------------CCceEEEEccCcHHHHHHHHHHHHhC
Q 019652 43 SFLQPKLEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGKEWRQILEEYRQTH 98 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~--q----------------------~~fDvilhK~t~~~~~~~l~~y~~~~ 98 (337)
++.+..+..++++.|++++.+|.+..... . ...|.|+.-....... .+.+..++
T Consensus 579 d~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~~-~la~~Le~- 656 (1073)
T 1a9x_A 579 DYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPL-KLARALEA- 656 (1073)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHHH-TTHHHHHH-
T ss_pred chhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchHH-HHHHHHHH-
Confidence 34455678899999999999997642211 0 1234444433322221 22222222
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
.|++++ .+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+.. ..++||+|+||..+. ++.
T Consensus 657 ~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~---gG~ 723 (1073)
T 1a9x_A 657 AGVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVL---GGR 723 (1073)
T ss_dssp TTCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------
T ss_pred CCCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCC---CCC
Confidence 378877 8899999999999999999876 899999998752 22222222 247899999998754 467
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECC--EEEE--EEEecCC-CCccccccCCCceeeecC
Q 019652 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGE--AIKV--VRRFSLP-DVTKQDLSTSAGVFRFPR 243 (337)
Q Consensus 178 ~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~--~v~~--~~R~Slp-~~~~~~~~~~~g~~~~~~ 243 (337)
+|.++.++++|.+. ..|+++|+||+..+++-|.++++ .+.+ ..+.-.+ +...++ ....+
T Consensus 724 Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~~-- 796 (1073)
T 1a9x_A 724 AMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACSL-- 796 (1073)
T ss_dssp CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEEE--
T ss_pred CeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEEe--
Confidence 99999999887752 36899999999436888888844 2332 2221111 111000 00000
Q ss_pred cccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 244 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 244 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
....+++. ..+.++++|.+++++||+ .++++|+++++ | ++||||||.-||
T Consensus 797 --------P~~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 797 --------PAYTLSQE-----IQDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp --------SCSSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred --------cCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 00112111 135678999999999999 78899999963 3 689999999988
No 43
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.55 E-value=6.2e-14 Score=132.62 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=101.8
Q ss_pred CCce-eeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 99 p~v~-ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
.|++ +.++++++..++||..+.++|.++ +|++|++.... +++.+.+....++||+|+||..+. +|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 3674 568899999999999999999875 79999986421 122222222468999999998855 467
Q ss_pred eeEEEeChhhhhcc---CCCeEEEecccCCeeEEEEEEC----CEEE-EEEEecCCCCccccccCCCceeeecCcccccc
Q 019652 178 ELSLAYDQYSLKKL---EPPLVLQEFVNHGVLFKVYIVG----EAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 249 (337)
Q Consensus 178 ~m~iv~~~~~L~~l---~~p~vvQeFI~h~~d~KV~VIG----~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~ 249 (337)
++.++.++++|... ..++++||||+ |.++.|.+++ +++. +..+.... . ..|.... +
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~-G~e~~v~~~~d~~~G~~~~~~~~~~~~--~------~~g~~~~---~---- 227 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV-GQELGVDAYVDLISGKVTSIFIKEKLT--M------RAGETDK---S---- 227 (331)
T ss_dssp -------------------CEEEEECCC-SEEEEEEEEECTTTCCEEEEEEEEEEE--E------ETTEEEE---E----
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC-CcEEEEEEEEecCCCeEEEEEEEEEEE--e------cCCceeE---e----
Confidence 89999999888764 46899999999 6778877775 3444 33332210 0 0011100 0
Q ss_pred cCCCCCCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecC-CCCC
Q 019652 250 SADDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINY-FPGY 310 (337)
Q Consensus 250 ~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~-fPg~ 310 (337)
. + +..+.+.++|.++.++||+ .++++|++.. +| +++++|||. +||.
T Consensus 228 ---~----~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 228 ---R----S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp ---E----E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTT
T ss_pred ---E----E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCc
Confidence 0 0 0125678999999999999 6778999954 34 699999999 6664
No 44
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.54 E-value=1.9e-13 Score=133.98 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=114.8
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
|++++ .++++++.+.||..+.++|.++ +|++|++..+.+ .+++.+.+. .++||+|+||..+. ++.+
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~---gg~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLA---AGKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSC---SSTT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCC---CCCC
Confidence 78787 8999999999999999999875 899999988852 222333222 37899999997754 5678
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEEC--CEEEEE--EEecCCCCccccccCCCceeeecCcc
Q 019652 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVS 245 (337)
Q Consensus 179 m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG--~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s 245 (337)
+.++.++++|.+. +.++++||||+ |.++.|.+++ +.++.. .|..-+... +....+...
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~-g~E~sv~~~~~G~~~~~~~~~~~~~~~~~--------~~~~~~~g~ 222 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE-GEEATVLALTDGETILPLLPSQDHKRLLD--------GDQGPMTGG 222 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC-SCEEEEEEEESSSCEEECCCBEECCEEET--------TTEEEECSC
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc-CcEEEEEEEEeCCEEEEcchheechhhcc--------CCCCCcCCC
Confidence 9999999887642 37899999999 8899998883 334432 121110000 000000000
Q ss_pred cccccCCCCCCCccccCCCChHHH-HHHHHHHHHHh---CCc---EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 246 CAAASADDADLDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~p~~~~~-~~lA~~l~~~L---GL~---l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.. .. .+..+++.. .+.+ ++++.++.++| |++ ++++|++++. +| ++|+|||.-||-.
T Consensus 223 ~~-~~-~p~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 223 MG-AV-APYPMDEAT-----LRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp SE-EE-ESCCCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred Ce-ee-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 00 011111110 1223 45577777776 444 5669999975 34 8999999999843
No 45
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.54 E-value=1.6e-13 Score=136.31 Aligned_cols=202 Identities=9% Similarity=0.077 Sum_probs=124.7
Q ss_pred CceEEEEccCcHHHHHHHHHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhH
Q 019652 74 PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD 152 (337)
Q Consensus 74 ~fDvilhK~t~~~~~~~l~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~ 152 (337)
..|+|+.= .+......+.+..++ -|++++ .++++++.+.||..+.++|.++ +|++|++..+. +.++..+
T Consensus 83 ~id~vv~g-~E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~-~~~ea~~ 152 (442)
T 3lp8_A 83 KIELVVIG-PETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFV-DTNSAYK 152 (442)
T ss_dssp TCCEEEEC-SHHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEES-SHHHHHH
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHHH
Confidence 56666651 112122223333332 378888 8999999999999999999875 89999998886 2223333
Q ss_pred HHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEE--CCEEE
Q 019652 153 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIV--GEAIK 217 (337)
Q Consensus 153 ~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VI--G~~v~ 217 (337)
.+. .++||+|+||..+. ++.++.++.+.+++.+. ..++++||||+ |.++.|.++ |+.+.
T Consensus 153 ~~~--~~g~PvVvKp~~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~~~~ 226 (442)
T 3lp8_A 153 FID--KHKLPLVVKADGLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE-GKEISFFTLVDGSNPV 226 (442)
T ss_dssp HHH--HSCSSEEEEESSCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEESSCEE
T ss_pred HHH--HcCCcEEEeECCCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec-CcEEEEEEEECCCeEE
Confidence 333 47999999997543 57899999999887531 26899999999 878888777 44554
Q ss_pred EE--EEecCCCCccccccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHH----HHHHHHHhCCcEE---EE
Q 019652 218 VV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLF---NL 287 (337)
Q Consensus 218 ~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~l----A~~l~~~LGL~l~---Gv 287 (337)
.. .+.- +....++ ...+.... +... +.. +++.. .+.+.+. +.++.+++|+.+. ++
T Consensus 227 ~~~~~~~~-~~~~~~~-------~g~~~gg~-g~~~-P~~~l~~~~-----~~~i~~~i~~~a~~~~~a~g~~~~G~~~v 291 (442)
T 3lp8_A 227 ILGVAQDY-KTIGDNN-------KGPNTGGM-GSYS-KPNIITQEM-----EHIIIQKIIYPTIKAMFNMNIQFRGLLFA 291 (442)
T ss_dssp EEEEEEEC-CEEEGGG-------EEEECSCS-EEEE-CTTSSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEE
T ss_pred EeEEeEee-eecccCC-------CCCCCCCc-EEEe-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 22 2211 1000000 00000000 0000 111 11111 1233443 6777789999554 49
Q ss_pred EEEEeCCCCCeEEEEEecCCCC
Q 019652 288 DIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 288 Dvi~~~~tg~~~~VIDVN~fPg 309 (337)
|++++. + .++|||+|.-||
T Consensus 292 e~~~~~-~--g~~viEiN~R~g 310 (442)
T 3lp8_A 292 GIIIKK-N--EPKLLEYNVRFG 310 (442)
T ss_dssp EEEEET-T--EEEEEEEESSCC
T ss_pred EEEEeC-C--CeEEEEEecCCC
Confidence 999985 2 389999999999
No 46
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.54 E-value=1.7e-13 Score=149.78 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=151.8
Q ss_pred cchhHHhhhhhcceEEEEecCCCCCC-------C-----------------CCCceEEEEccCcHHHHH---HHHH--HH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGKEWRQ---ILEE--YR 95 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~~l~-------~-----------------q~~fDvilhK~t~~~~~~---~l~~--y~ 95 (337)
+-..+.+++++.|++++.+|.+.... + ....|+|+.-...+.+.+ .+.+ ..
T Consensus 29 sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~l 108 (1073)
T 1a9x_A 29 SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVL 108 (1073)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHH
Confidence 44568889999999999999764321 0 025688887665432211 1221 22
Q ss_pred HhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCC
Q 019652 96 QTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (337)
Q Consensus 96 ~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (337)
++ -|+.++ .+++++..+.||..+.++|.++ +|++|++..+++ .++..+.. ..++||+|+||..+.|
T Consensus 109 e~-~gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~--~~ig~PvVvKp~~~~G-- 175 (1073)
T 1a9x_A 109 EE-FGVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVA--ADVGFPCIIRPSFTMG-- 175 (1073)
T ss_dssp HH-HTCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHH--HHHCSSEEEEETTCCT--
T ss_pred HH-cCCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCCC--
Confidence 22 278888 8999999999999999999975 899999998862 22222222 2478999999988654
Q ss_pred cceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECCE---EEEE--EEecCCCCccccccCCCceee
Q 019652 175 KSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGEA---IKVV--RRFSLPDVTKQDLSTSAGVFR 240 (337)
Q Consensus 175 ~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~~---v~~~--~R~Slp~~~~~~~~~~~g~~~ 240 (337)
+.|+.++.++++|.+. ..++++||||...+++.|.|++|. +..+ ...--|. .+
T Consensus 176 -g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~~dp~----~v-------- 242 (1073)
T 1a9x_A 176 -GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM----GI-------- 242 (1073)
T ss_dssp -TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCT----TS--------
T ss_pred -CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEecccCC----cc--------
Confidence 5688899999887653 358999999993389999999753 3322 1111111 00
Q ss_pred ecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeEEEEEecCCCC
Q 019652 241 FPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 241 ~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~--l~GvDvi~~~~tg~~~~VIDVN~fPg 309 (337)
|.... .. ..+. .+++. ..+.++++|.++.++||+. .+++|++++..+| +++|||||.=++
T Consensus 243 -~~g~s-~~-~~Pa~~l~~~-----~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 243 -HTGDS-IT-VAPAQTLTDK-----EYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp -CGGGS-CE-EESCCSCCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred -ccCcE-EE-EecCCCCCHH-----HHHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 10000 00 0011 12111 1346789999999999997 8899999986445 699999994333
No 47
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.53 E-value=3.6e-13 Score=133.65 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=131.9
Q ss_pred hhhhhcceEEEEecCCCCCCC---------------------CCCceEEEEccCcHHH-HHHHHHHHHhCCCceee-ChH
Q 019652 51 GLARNKGILFVAIDQNRPLSD---------------------QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPP 107 (337)
Q Consensus 51 ~~a~~~Gi~~v~iD~~~~l~~---------------------q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~Vi-Dp~ 107 (337)
.++++.|+..+.+|+..+-.. ...+|+|+. +.+.. ...+.+..++ -+++++ .++
T Consensus 39 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~d~vi~--~~E~~~~~~~~~~l~~-~gi~~~g~~~ 115 (451)
T 2yrx_A 39 KAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIV--GPEAPLASGIVDRFMA-EGLRIFGPSQ 115 (451)
T ss_dssp HHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEE--CSHHHHHTTHHHHHHH-TTCCEESCCH
T ss_pred HHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHcCCCEEEE--CCchHHHHHHHHHHHH-CCCCEeCccH
Confidence 344667888777765432110 125677765 22222 1222222222 378887 788
Q ss_pred HHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh
Q 019652 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (337)
Q Consensus 108 ~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (337)
++++.+.||..+.++|.++ +|++|++..+. +.+++.+.+. .++||+|+||..+. ++.++.++.++++
T Consensus 116 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~PvVvKp~~~~---gg~Gv~~v~~~~e 182 (451)
T 2yrx_A 116 RAALIEGSKAFAKELMKKY-------GIPTADHAAFT-SYEEAKAYIE--QKGAPIVIKADGLA---AGKGVTVAQTVEE 182 (451)
T ss_dssp HHHHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEECC-------CCEEEESSHHH
T ss_pred HHHHHhhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--hcCCcEEEEeCCCC---CCCcEEEECCHHH
Confidence 9999999999999999875 89999998885 2223333222 37899999998754 5678999999987
Q ss_pred hhcc-------------CCCeEEEecccCCeeEEEEEE--CCEEEEE--EEecCCCCccccccCCCceeeecCccccccc
Q 019652 188 LKKL-------------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 250 (337)
Q Consensus 188 L~~l-------------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~~s~~~~~ 250 (337)
|.+. ..++++||||+ |.++.|.++ |+.++.. .|..-+.+. +....+..... ..
T Consensus 183 l~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~-~~ 252 (451)
T 2yrx_A 183 ALAAAKAALVDGQFGTAGSQVVIEEYLE-GEEFSFMAFVNGEKVYPLAIAQDHKRAYD--------GDEGPNTGGMG-AY 252 (451)
T ss_dssp HHHHHHHHHHHSCCBTTBCCEEEEECCC-SEEEEEEEEEETTEEEECCCBEECCEEET--------TTEEEECSCSE-EE
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCc-CcEEEEEEEEcCCEEEEeeeEEecccccc--------CCCCCCCCCCe-EE
Confidence 6531 37899999999 888888777 4433322 111000000 00000000000 00
Q ss_pred CCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCc---EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 251 ADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 251 ~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---GL~---l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.+.. +++.. .+.+ ++++.++.++| |++ ++++|++++. +| ++|+|||.-||-.
T Consensus 253 -~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 312 (451)
T 2yrx_A 253 -SPVPQISDEM-----MDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEFNARFGDP 312 (451)
T ss_dssp -ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred -ccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCc
Confidence 0111 11110 1223 45667777765 655 4568999985 33 8999999999854
No 48
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.52 E-value=1.1e-13 Score=137.18 Aligned_cols=180 Identities=15% Similarity=0.053 Sum_probs=115.0
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
|++++ .++++++.+.||..+.++|.++ +|++|++..+. +.++..+.+. .++||+|+||..+. ++.+
T Consensus 91 Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~-~~~ea~~~~~--~~g~PvVvKp~~~~---gg~G 157 (431)
T 3mjf_A 91 GLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFT-DVEAALAYVR--QKGAPIVIKADGLA---AGKG 157 (431)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEES-CHHHHHHHHH--HHCSSEEEEESSSC---TTCS
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHHH--HcCCeEEEEECCCC---CCCc
Confidence 78887 8999999999999999999875 89999998886 2223333233 37899999987543 5789
Q ss_pred eEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEE--CCEEEEEEEecCCCCccccccCCCceeeecC
Q 019652 179 LSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR 243 (337)
Q Consensus 179 m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~ 243 (337)
+.++.+++++.+. ..++++||||+ |.++.|.++ |+++..... .. +. ...++++.
T Consensus 158 V~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~~~~~~~~-----~~--~~---~~~~~~~~ 226 (431)
T 3mjf_A 158 VIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD-GEEASFIVMVDGENVLPMAT-----SQ--DH---KRVGDGDT 226 (431)
T ss_dssp EEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC-SEEEEEEEEEESSCEEECCC-----BE--EC---CEEETTTE
T ss_pred EEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC-CcEEEEEEEEcCCEEEEEEe-----eE--ec---eecccCCC
Confidence 9999999876542 35899999999 888888888 444442210 00 00 00111110
Q ss_pred cccc---cccCCCCC-CCccccCCCChHHHHHH----HHHHHHHhCCcEEE---EEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 244 VSCA---AASADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 244 ~s~~---~~~~~~~~-~~~~~~~~p~~~~~~~l----A~~l~~~LGL~l~G---vDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.... ++. .+.. +++.. .+.+.+. +.++.+++|+.+.| +|++++. +| +++|||+|.-||..
T Consensus 227 g~~~gg~g~~-~P~~~l~~~~-----~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~ 297 (431)
T 3mjf_A 227 GPNTGGMGAY-SPAPVVTDDV-----HQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDP 297 (431)
T ss_dssp EEECSCSEEE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTT
T ss_pred CCCCCCceEE-eeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCc
Confidence 0000 000 0111 11110 1222332 45666788986554 9999986 34 59999999999943
No 49
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.52 E-value=1.9e-13 Score=134.05 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=115.1
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcce
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 177 (337)
-|++++ .++++++.+.||..+.++|.++ +|++|++..+. +.+++.+.+. .++||+|+||..+. ++.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~PvvvKp~~g~---gg~ 151 (424)
T 2yw2_A 85 RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFT-DFEKAKEYVE--KVGAPIVVKADGLA---AGK 151 (424)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEESSCC---TTC
T ss_pred CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--HcCCcEEEEeCCCC---CCC
Confidence 378887 8899999999999999999875 89999998885 2222333222 37899999997754 567
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEE--CCEEEEE--EEecCCCCccccccCCCceee
Q 019652 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFR 240 (337)
Q Consensus 178 ~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~R~Slp~~~~~~~~~~~g~~~ 240 (337)
++.++.++++|.+. +.++++||||+ |.++.|.++ |+.++.. .|...+.+. +...
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~~~G~~~~~~~~~~~~~~~~~--------~~~~ 222 (424)
T 2yw2_A 152 GAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE-GEEASYIVMINGDRYVPLPTSQDHKRLLD--------EDKG 222 (424)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEETTEEEECCCBEECCEEET--------TTEE
T ss_pred CEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CcEEEEEEEEcCCEEEeecceeecccccc--------CCCC
Confidence 99999999877642 26899999999 877777766 5544432 121100000 0000
Q ss_pred ecCcccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCc---EEEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 241 FPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 241 ~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---GL~---l~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
.+..... .. .+.. +++.. .+.+ ++++.++.++| |++ ++++|++++. +| ++|+|||.-||-.+
T Consensus 223 ~~~g~~~-~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 223 PNTGGMG-AY-SPTPVINEEV-----EKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLGDPE 292 (424)
T ss_dssp EECSCSE-EE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred CCCCCCe-eE-CCCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 0000000 00 0111 11110 1223 35677777776 555 4569999985 33 89999999998443
No 50
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.51 E-value=6.4e-13 Score=131.95 Aligned_cols=227 Identities=12% Similarity=0.139 Sum_probs=143.9
Q ss_pred chhHHhhhhhcceEEEEecCCCCC-C--------------------C------------CCCceEEEEccCc-HHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPL-S--------------------D------------QGPFDIVLHKLTG-KEWRQIL 91 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l-~--------------------~------------q~~fDvilhK~t~-~~~~~~l 91 (337)
..+++++|+++|++++.+|.+..- . . ...+|+|+.-... .+.. .+
T Consensus 18 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~-~~ 96 (461)
T 2dzd_A 18 AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENI-QF 96 (461)
T ss_dssp HHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCH-HH
T ss_pred HHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCH-HH
Confidence 346788889999999988765311 0 0 0135666543210 0111 12
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeec
Q 019652 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 92 ~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (337)
.+..++ -|++++ .++++++.+.||..+.++|.++ +|++|++. .+. +.+++.+.+. .++||+|+||.
T Consensus 97 ~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~ 165 (461)
T 2dzd_A 97 AKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKAA 165 (461)
T ss_dssp HHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEES
T ss_pred HHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEeC
Confidence 222222 377765 7799999999999999999875 89999986 443 2222222222 37899999998
Q ss_pred cCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEE-EEEEecCCCCcccc
Q 019652 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIK-VVRRFSLPDVTKQD 231 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~-~~~R~Slp~~~~~~ 231 (337)
.+. ++.+|.++.++++|.+. +.++++||||+.+.++.|.++++ +++ +..|... .
T Consensus 166 ~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~-~----- 236 (461)
T 2dzd_A 166 LGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCS-V----- 236 (461)
T ss_dssp TTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEEEE-E-----
T ss_pred CCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEecccc-c-----
Confidence 754 46789999999877542 47899999999448899988864 243 3333110 0
Q ss_pred ccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCCC
Q 019652 232 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 232 ~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fPg 309 (337)
.......+.+ + +. .+++. ..+.+.++|.++.+++|+..++ +|++++. | +++|+|||.-||
T Consensus 237 ~~~~~~~~~~---~-------P~~~l~~~-----~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~ 298 (461)
T 2dzd_A 237 QRRHQKVVEV---A-------PSVSLSDE-----LRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQ 298 (461)
T ss_dssp EETTEEEEEE---E-------SCTTSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred cccccceEEE---C-------CcccCCHH-----HHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCC
Confidence 0000000000 0 11 11111 1346789999999999999766 9999986 3 699999999887
Q ss_pred CC
Q 019652 310 YG 311 (337)
Q Consensus 310 ~~ 311 (337)
..
T Consensus 299 ~~ 300 (461)
T 2dzd_A 299 VE 300 (461)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 51
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.51 E-value=4.5e-13 Score=132.58 Aligned_cols=177 Identities=14% Similarity=0.198 Sum_probs=118.6
Q ss_pred CCceeeC-hHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCc
Q 019652 99 PEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~ViD-p~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
-|++++. ++++++.+.||..+.++|.++ +|++|++. .+. +.+++.+.+. .++||+|+||..+. +
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~---g 163 (451)
T 2vpq_A 97 CQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCC---T
T ss_pred cCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCC---C
Confidence 4788766 589999999999999999975 78998865 443 2222322222 37899999998754 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEEE-EEec-CCCCccccccCCCc
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKVV-RRFS-LPDVTKQDLSTSAG 237 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~~-~R~S-lp~~~~~~~~~~~g 237 (337)
+.|+.++.++++|.+. +.++++||||+.++++.|.++++ ++... .|.. ... ....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~-------~~~~ 236 (451)
T 2vpq_A 164 GKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQR-------RMQK 236 (451)
T ss_dssp TCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEEEEEEE-------TTEE
T ss_pred CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEeccccchhc-------cccc
Confidence 6789999999876542 47899999999438999988853 34432 2211 100 0000
Q ss_pred eeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 238 VFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~-GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.+.. .+.. +++.. .+.+.++|.++.++||+.-+ ++|++++..+| +++|+|||.-||-.
T Consensus 237 ~~~~----------~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 237 LVEE----------APSPILDDET-----RREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRIQVE 296 (451)
T ss_dssp EEEE----------ESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred eEEE----------cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCCCCc
Confidence 0000 0111 11111 34678999999999999854 59999982245 69999999988754
No 52
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=1.5e-12 Score=130.73 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=117.2
Q ss_pred CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceee
Q 019652 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (337)
Q Consensus 100 ~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 179 (337)
|++ -.+++++..+.||..+.++|.++ +|++|++..+.+ .+++.+.. ..++||+|+||..+. +|.||
T Consensus 125 Gi~-g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~lg~PvVVKP~~g~---gg~Gv 190 (474)
T 3vmm_A 125 GLR-GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRAAL--EEIGTPLILKPTYLA---SSIGV 190 (474)
T ss_dssp TCC-CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHHHH--HHSCSSEEEEESSCC---TTTTC
T ss_pred CCC-CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEECCCC---cCceE
Confidence 666 88999999999999999999975 899999988863 22232222 348999999998754 46689
Q ss_pred EEEeChhhhhcc-------------------CCCeEEEecccCCe-------------eEEEEEECCEEEEE--EEecCC
Q 019652 180 SLAYDQYSLKKL-------------------EPPLVLQEFVNHGV-------------LFKVYIVGEAIKVV--RRFSLP 225 (337)
Q Consensus 180 ~iv~~~~~L~~l-------------------~~p~vvQeFI~h~~-------------d~KV~VIG~~v~~~--~R~Slp 225 (337)
.++.++++|.+. +.++++||||.... .+.+++.++++.++ .++. +
T Consensus 191 ~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~-~ 269 (474)
T 3vmm_A 191 TLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKT-P 269 (474)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEEC-C
T ss_pred EEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeec-c
Confidence 999999876531 46899999998322 23446667775543 1221 1
Q ss_pred CCccccccCCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCcEEE--EEEEEeCCCCCeEEEEE
Q 019652 226 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN--LDIIREHGTRDQFYVID 303 (337)
Q Consensus 226 ~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G--vDvi~~~~tg~~~~VID 303 (337)
.....+ .... .+..+++.. .+.+.++|.++.+++|+.-+| ||++++. +| ++++||
T Consensus 270 ~~~~~~-----------~~~~-----~Pa~l~~~~-----~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~~iE 326 (474)
T 3vmm_A 270 QIGFTE-----------TSHI-----TPSILDEEA-----KKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPGLIE 326 (474)
T ss_dssp CBTTBC-----------CEEE-----ESCCCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEEEEE
T ss_pred CCCccc-----------eEEE-----ECCCCCHHH-----HHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEEEEE
Confidence 100000 0000 011222111 346899999999999998777 9999986 35 699999
Q ss_pred ecCCCC
Q 019652 304 INYFPG 309 (337)
Q Consensus 304 VN~fPg 309 (337)
||.=||
T Consensus 327 vNpR~~ 332 (474)
T 3vmm_A 327 SAARFA 332 (474)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 997665
No 53
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.49 E-value=2.7e-13 Score=132.91 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=115.2
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCccee
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
|++++ .++++++.+.||..+.++|.++ +|++|++..+. +.+++.+.+. .++||+|+||..+. ++.+
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~P~vvKp~~~~---~g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFT-SFDEAKAYVQ--EKGAPIVIKADGLA---AGKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEESSCG---GGTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--hcCCCEEEEeCCCC---CCCc
Confidence 78888 8899999999999999999975 89999998885 2222333222 37899999997753 5789
Q ss_pred eEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEE--CCEEEEE--EEecCCCCccccccCCCceeee
Q 019652 179 LSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRF 241 (337)
Q Consensus 179 m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VI--G~~v~~~--~R~Slp~~~~~~~~~~~g~~~~ 241 (337)
+.++.++++|... ..++++||||+ |.++.|.++ |+.++.. .|..-+.+. +....
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-g~E~sv~~~~dG~~~~~~~~~~~~~~~~~--------~~~~~ 223 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS-GEEFSLMAFVKGEKVYPMVIAQDHKRAFD--------GDKGP 223 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC-SEEEEEEEEEETTEEEECCCBEEEEEEEG--------GGEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc-CcEEEEEEEEcCCEEEecceeeeeehhcC--------CCCCC
Confidence 9999999877542 36899999999 888888887 4544321 111000000 00000
Q ss_pred cCcccccccCCCCC-CCccccCCCChHHH-HHHHHHHHHHh---CCcE---EEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 019652 242 PRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVIDINYFPGYGK 312 (337)
Q Consensus 242 ~~~s~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~L---GL~l---~GvDvi~~~~tg~~~~VIDVN~fPg~~g 312 (337)
+..... .. .+.. +++.. .+.+ ++++.++.++| |+++ +++|++++. +| ++|+|||.-||-.+
T Consensus 224 ~~g~~~-~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 224 NTGGMG-AY-SPVPQISEET-----VRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGDPE 292 (422)
T ss_dssp EEEEEE-EE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred CCCCCe-eE-ccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCCcH
Confidence 000000 00 0111 11111 1222 34777777775 5554 568999985 33 89999999999554
No 54
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.48 E-value=5.1e-13 Score=137.28 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=121.5
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--E--ec---------------------CCCChhH
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--ER---------------------DASSIPD 152 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~--~~---------------------~~~~~~~ 152 (337)
-|++++ .++++++.+.||..+.+++.++ +|++|++.. + .. ...+..+
T Consensus 163 ~Gi~~iGp~~~ai~~~~DK~~ak~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ee 235 (587)
T 3jrx_A 163 NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235 (587)
T ss_dssp TTCEESSCCHHHHHHHCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHH
T ss_pred CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHH
Confidence 488888 8999999999999999999875 788888754 0 00 0112222
Q ss_pred HHH-HcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECCE---EE-E
Q 019652 153 VVL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGEA---IK-V 218 (337)
Q Consensus 153 ~l~-~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~~---v~-~ 218 (337)
... ...++||+|+||..++ ++.||.++.++++|.+. +.++++|+||+.++.+-|.|++|. ++ .
T Consensus 236 a~~~a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l 312 (587)
T 3jrx_A 236 GLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSL 312 (587)
T ss_dssp HHHHHHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEE
T ss_pred HHHHHHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 111 2348999999998755 46789999999887652 578999999994499999999763 33 3
Q ss_pred EEEe-cCCCCccccccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCC
Q 019652 219 VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGT 295 (337)
Q Consensus 219 ~~R~-Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~t 295 (337)
..|. |.. ..+...... .++. +++.. .+.+.++|.++++++|+. .++||++++. +
T Consensus 313 ~~rd~siq--------------rr~qk~ie~---aPa~~l~~~~-----~~~i~~~A~~~a~alGy~G~~~VEfl~d~-d 369 (587)
T 3jrx_A 313 FGRDCSIQ--------------RRHQKIVEE---APATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-D 369 (587)
T ss_dssp EEEEEEEE--------------SSSCEEEEE---ESCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECS-S
T ss_pred eeeecccc--------------ccccceeEe---cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEeC-C
Confidence 3332 210 001000000 0111 11111 356789999999999995 4559999975 3
Q ss_pred CCeEEEEEecCCCCCC
Q 019652 296 RDQFYVIDINYFPGYG 311 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~ 311 (337)
| ++|++|||.=||-.
T Consensus 370 G-~~yflEINpRl~~e 384 (587)
T 3jrx_A 370 G-SFHFLELNPRLQVE 384 (587)
T ss_dssp S-CEEEEEEESSCCTT
T ss_pred C-CEEEEEEeCCCCCc
Confidence 4 69999999999853
No 55
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.47 E-value=3.2e-13 Score=137.62 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=115.2
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--E--ec---------------------CCCChhH
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--ER---------------------DASSIPD 152 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~--~~---------------------~~~~~~~ 152 (337)
-|++++ .++++++.+.||..+.++|.++ +|++|++.. + .. ...+..+
T Consensus 147 ~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e 219 (540)
T 3glk_A 147 NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 219 (540)
T ss_dssp TTCEESSCCHHHHC---CHHHHHHHHHHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHH
T ss_pred cCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHH
Confidence 388888 8999999999999999999875 789998764 0 00 0112222
Q ss_pred HHH-HcCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECCE---EE-E
Q 019652 153 VVL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGEA---IK-V 218 (337)
Q Consensus 153 ~l~-~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~~---v~-~ 218 (337)
... ...++||+|+||..++ ++.||.++.++++|.+. +.++++|+||+.++.+-|.|++|. +. .
T Consensus 220 a~~~a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l 296 (540)
T 3glk_A 220 GLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSL 296 (540)
T ss_dssp HHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEE
Confidence 111 2348999999998754 46799999999887652 578999999984499999999762 33 3
Q ss_pred EEEe-cCCCCccccccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCC
Q 019652 219 VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGT 295 (337)
Q Consensus 219 ~~R~-Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~t 295 (337)
..|. +... .+...... .+.. +++.. .+.+.++|.++++++|+. .++||++++. +
T Consensus 297 ~~rd~s~qr--------------~~~k~ie~---~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~VEf~~d~-d 353 (540)
T 3glk_A 297 FGRDCSIQR--------------RHQKIVEE---APATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-D 353 (540)
T ss_dssp EEEEEEEC-----------------CCSEEE---ESCTTSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-T
T ss_pred eceeeeeee--------------cccceEEe---cCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-C
Confidence 3332 2110 01100000 0111 11111 356789999999999995 5569999985 3
Q ss_pred CCeEEEEEecCCCCCC
Q 019652 296 RDQFYVIDINYFPGYG 311 (337)
Q Consensus 296 g~~~~VIDVN~fPg~~ 311 (337)
| ++|++|||.=||-.
T Consensus 354 g-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 354 G-SFHFLELNPRLQVE 368 (540)
T ss_dssp S-CEEEEEEECSCCTT
T ss_pred C-CEEEEEEECCCCCc
Confidence 5 69999999999854
No 56
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.47 E-value=9.6e-13 Score=129.16 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=117.5
Q ss_pred eeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE
Q 019652 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (337)
Q Consensus 102 ~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 181 (337)
++-.++++++.+.||..+.++|.++ +|++|++..+.+ .+++.+. ...++||+|+||..+. ++.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~--~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREK--IKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHH--HTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHH--HHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5668999999999999999999975 899999988852 2222222 2358999999998754 4679999
Q ss_pred EeChhhhhcc-----------C--CCeEEEecccCCeeEEEEEE--CCEEEEEEEecCCCCccccccCCCceeeecCccc
Q 019652 182 AYDQYSLKKL-----------E--PPLVLQEFVNHGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC 246 (337)
Q Consensus 182 v~~~~~L~~l-----------~--~p~vvQeFI~h~~d~KV~VI--G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~~s~ 246 (337)
+.++++|.+. . .++++||||+ |.++.|.++ |+.+..... ..+... . ..+....+....
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~-G~E~sv~~~~dg~~~~~~~~--~~~~~~--~--~~~~~~~~~g~~ 232 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA-GNELSAMAVVNGRNFVILPF--VRDYKR--L--MDGDRGPNTGGM 232 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC-SEEEEEEEEEETTEEEECCC--CEECCE--E--ETTTEEEECSCS
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc-CcEEEEEEEECCCEEEEeee--eEeeee--c--cCCCCCCCCCCc
Confidence 9999877541 1 3899999999 988888888 443332210 000000 0 000000000000
Q ss_pred ccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-----CC-cEEEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 019652 247 AAASADDADLDPCVAELPPRPLLERLAKELRRQL-----GL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 313 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-----GL-~l~GvDvi~~~~tg~~~~VIDVN~fPg~~gv 313 (337)
+.. .+..+++.. .+.++++|.++.++| +. .++++|++++. +| +||+|||.-||-.+.
T Consensus 233 -~~~-~P~~l~~~~-----~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 233 -GSW-GPVEIPSDT-----IKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGDPET 295 (412)
T ss_dssp -EEE-ECCCCCHHH-----HHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTHH
T ss_pred -eEE-ECCCCCHHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCCCcc
Confidence 000 011121111 245688999999999 44 56679999975 33 899999999986543
No 57
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.46 E-value=8.8e-13 Score=130.74 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=114.3
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCc-EEEeeccCCCCCcc
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKS 176 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~Gs~~s 176 (337)
-|++++ .++++++.+.||..+.++|.++ +|++|++..+.+ .+++.+.+. .++|| +|+||..+. ++
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFIL--SADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHHH--HCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hCCCCeEEEEeCCCC---CC
Confidence 378888 8899999999999999999875 899999998852 222333222 48999 999997754 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEEC--CEEEEE--EEecCCCCccccccCCCcee
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGVF 239 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG--~~v~~~--~R~Slp~~~~~~~~~~~g~~ 239 (337)
.++.++.++++|.+. ..++++||||+ |.++.|.+++ +.+... .|..-+... .+ .+ .
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~~~~~~~~~~~~~~~~~-~~----~~-~ 250 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD-GEEVSCLCFTDGKTVAPMPPAQDHKRLLE-GD----GG-P 250 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC-SEEEEEEEEECSSCEEECCCBEEEEEEET-TT----EE-E
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-CCeEEEEEEECCCEEEEcceeeecccccC-CC----CC-C
Confidence 799999999877641 36899999999 9899998884 334322 111000000 00 00 0
Q ss_pred eecCcccccccCCCCC-CCccccCCCChHHHH-HHHHHHHHHh---CC---cEEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 240 RFPRVSCAAASADDAD-LDPCVAELPPRPLLE-RLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 240 ~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~-~lA~~l~~~L---GL---~l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
++ ... +.. .+.. +++.. .+.+. ++|.++.++| |+ .++++|++++. +| ++|+|||.-||-.
T Consensus 251 ~~--g~~-~~~-~P~~~l~~~~-----~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~~~~ 318 (452)
T 2qk4_A 251 NT--GGM-GAY-CPAPQVSNDL-----LLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVLEFNCRFGDP 318 (452)
T ss_dssp EE--EEE-EEE-ESCTTCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEEEEESSCCTT
T ss_pred CC--CCc-eee-ccCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEeccCCCc
Confidence 00 000 000 0111 11111 12333 5777788776 44 46789999975 33 8999999999944
No 58
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.46 E-value=6.5e-13 Score=131.42 Aligned_cols=177 Identities=12% Similarity=0.215 Sum_probs=119.0
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCc
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
-|++++ .++++++.+.||..+.++|.++ +|++|++. .+. +.+++.+.+. .++||+|+||..+. +
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCC---C
Confidence 378766 7799999999999999999875 79999886 443 2222222222 37899999998754 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEE-EEEEecCCCCccccccCCCce
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIK-VVRRFSLPDVTKQDLSTSAGV 238 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~-~~~R~Slp~~~~~~~~~~~g~ 238 (337)
+.|+.++.++++|.+. +.++++||||+.++++.|.|+++ ++. +..|... +.. .....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~--~~~----~~~~~ 237 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCS--IQR----RNQKL 237 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEE--EEE----TTEEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeeecc--ccc----ccccc
Confidence 6789999999877542 56899999999448999998864 343 2232210 000 00000
Q ss_pred eeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 239 FRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
+.. .+. .+++. ..+.+.++|.++.++||+. ++++|++++. +| +++|+|||.-||-.
T Consensus 238 ~~~----------~P~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 238 VEI----------APSLILTPE-----KREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp EEE----------ESCSSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred eeE----------CCcccCCHH-----HHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000 011 12111 1346789999999999998 4569999975 34 68999999988743
No 59
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.44 E-value=1.2e-12 Score=129.57 Aligned_cols=176 Identities=11% Similarity=0.169 Sum_probs=118.8
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCCh-hHHHHHcCCCCcEEEeeccCCCCC
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSA 174 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~-~~~l~~~~l~fP~VvKp~~a~Gs~ 174 (337)
-|++++ .++++++.+.||..+.++|.++ +|++|++. .+. +.+++ .+.+. .++||+|+||..+.
T Consensus 98 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~--- 164 (449)
T 2w70_A 98 SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGG--- 164 (449)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCC---
T ss_pred cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCC---
Confidence 377765 5799999999999999999876 79999886 554 22233 32222 37899999998754
Q ss_pred cceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEE-EEEecCCCCccccccCCCc
Q 019652 175 KSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKV-VRRFSLPDVTKQDLSTSAG 237 (337)
Q Consensus 175 ~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~-~~R~Slp~~~~~~~~~~~g 237 (337)
+|.++.++.++++|.+. +.++++||||+.++++.|.++++ ++.. ..|... ... ....
T Consensus 165 gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~--~~~----~~~~ 238 (449)
T 2w70_A 165 GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCS--MQR----RHQK 238 (449)
T ss_dssp TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEE--EEE----TTEE
T ss_pred CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceecc--ccc----CCcc
Confidence 46789999999876542 57899999999448999988853 3433 233110 000 0000
Q ss_pred eeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 238 VFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 238 ~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
.... .+. .+++.. .+.+.++|.++.++||+. ++++|++++. | +++|+|||.-||-.
T Consensus 239 ~~~~----------~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~~~ 296 (449)
T 2w70_A 239 VVEE----------APAPGITPEL-----RRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQVE 296 (449)
T ss_dssp EEEE----------ESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCCTT
T ss_pred eeee----------CCcccCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCCcc
Confidence 0000 011 121111 346789999999999996 4679999986 3 69999999988743
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.41 E-value=7.7e-13 Score=138.13 Aligned_cols=227 Identities=12% Similarity=0.155 Sum_probs=141.3
Q ss_pred cchhHHhhhhhcceEEEEecCCC--CCC-----C-------------------------CCCceEEEEccCc-HHHHHHH
Q 019652 45 LQPKLEGLARNKGILFVAIDQNR--PLS-----D-------------------------QGPFDIVLHKLTG-KEWRQIL 91 (337)
Q Consensus 45 ~~~~l~~~a~~~Gi~~v~iD~~~--~l~-----~-------------------------q~~fDvilhK~t~-~~~~~~l 91 (337)
+..+++++|++.|+.++.++.+. +.. + ....|+|+.-... .+.....
T Consensus 39 ia~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a 118 (675)
T 3u9t_A 39 IACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFA 118 (675)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCHHHH
Confidence 45678999999999999996432 100 0 0134554432211 0111112
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEE--EecCCCChhHHHHHcCCCCcEEEeec
Q 019652 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 92 ~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (337)
+...+ -|++++ .++++++.+.||..+.++|.++ +|++|++.. +. +.+++.+.. ..++||+|+||.
T Consensus 119 ~~le~--~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~-s~~e~~~~a--~~igyPvvvKp~ 186 (675)
T 3u9t_A 119 RACEE--AGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQ-DLETFRREA--GRIGYPVLLKAA 186 (675)
T ss_dssp HHHHT--TTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCC-CTTHHHHHH--HHSCSSBCCBCC
T ss_pred HHHHH--cCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCC-CHHHHHHHH--HhCCCcEEEEEC
Confidence 22222 377776 7899999999999999999875 899998754 22 233333322 348999999998
Q ss_pred cCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEE-EEEEe-cCCCCccc
Q 019652 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIK-VVRRF-SLPDVTKQ 230 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~-~~~R~-Slp~~~~~ 230 (337)
.++ ++.||.++.++++|.+. +.++++|+||+..+.+-|-|++| ++. ...|. |...
T Consensus 187 ~G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~~rd~s~qr---- 259 (675)
T 3u9t_A 187 AGG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQR---- 259 (675)
T ss_dssp C---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEEEEECCCBS----
T ss_pred CCC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEeccccceee----
Confidence 754 57789999999887642 35899999999548888888864 333 33443 2110
Q ss_pred cccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEEEEEecCCC
Q 019652 231 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFP 308 (337)
Q Consensus 231 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~VIDVN~fP 308 (337)
. ++... ..+ +. .+++. ..+.+.++|.++.+++|+ +.++||++++. +| ++|++|||.=|
T Consensus 260 ----~------~qk~i--e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~ 319 (675)
T 3u9t_A 260 ----R------HQKVV--EEA-PAPGLGAE-----LRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRL 319 (675)
T ss_dssp ----S------SSBCE--EEE-SCSSCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSC
T ss_pred ----c------cceEE--EEC-CCCCCCHH-----HHHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEeccccc
Confidence 0 00000 000 11 12111 134678999999999999 56779999986 45 68999999999
Q ss_pred CC
Q 019652 309 GY 310 (337)
Q Consensus 309 g~ 310 (337)
+-
T Consensus 320 ~~ 321 (675)
T 3u9t_A 320 QV 321 (675)
T ss_dssp CT
T ss_pred cC
Confidence 74
No 61
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.37 E-value=7.5e-12 Score=137.30 Aligned_cols=226 Identities=12% Similarity=0.151 Sum_probs=139.7
Q ss_pred chhHHhhhhhcceEEEEecCCCCCCC---------------------------------CCCceEEEEccCc-HHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLSD---------------------------------QGPFDIVLHKLTG-KEWRQIL 91 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~~---------------------------------q~~fDvilhK~t~-~~~~~~l 91 (337)
..+++++|++.|+.++.++.+..-.. +...|+|+.-... .+.. .+
T Consensus 16 a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~-~~ 94 (1150)
T 3hbl_A 16 AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENE-QF 94 (1150)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCH-HH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccH-HH
Confidence 34688899999999999875431110 0134555543211 1111 12
Q ss_pred HHHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeec
Q 019652 92 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPL 168 (337)
Q Consensus 92 ~~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 168 (337)
.+..++ -|++++ .++++++.+.||..+.+++.++ +|++|++. .+. +.+++.+. ...++||+|+||.
T Consensus 95 a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~--a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 95 ARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEF--AEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTT--GGGTCSSEEEECC
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHH--HHHcCCCEEEEeC
Confidence 222222 378877 8899999999999999999875 89999987 444 22222221 2358999999998
Q ss_pred cCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccc
Q 019652 169 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQ 230 (337)
Q Consensus 169 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~ 230 (337)
.++ ++.+|.++.++++|.+. +.++++|+||+..+.+-|-|+++. +....|. +...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s~qr---- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQR---- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEEEES----
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccceec----
Confidence 754 57899999999876542 468999999994489999999652 3333332 1100
Q ss_pred cccCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeEEEEEecCCC
Q 019652 231 DLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 308 (337)
Q Consensus 231 ~~~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~G-vDvi~~~~tg~~~~VIDVN~fP 308 (337)
. +... ... .+. .+++.. .+.+.++|.++.+++|+.-+| +|++++.+ ++|+||||.=|
T Consensus 237 ----~------~~k~--~e~-~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR~ 295 (1150)
T 3hbl_A 237 ----R------HQKV--VEV-APSVGLSPTL-----RQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPRV 295 (1150)
T ss_dssp ----S------SCEE--EEE-SSCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECSC
T ss_pred ----c------Ccee--EEe-cCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCCC
Confidence 0 0000 000 011 121111 346789999999999987655 99999863 69999999999
Q ss_pred CCC
Q 019652 309 GYG 311 (337)
Q Consensus 309 g~~ 311 (337)
|-.
T Consensus 296 ~g~ 298 (1150)
T 3hbl_A 296 QVE 298 (1150)
T ss_dssp CTT
T ss_pred CCC
Confidence 743
No 62
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.35 E-value=7.2e-12 Score=127.76 Aligned_cols=178 Identities=14% Similarity=0.162 Sum_probs=116.4
Q ss_pred ceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEE-----ecC-----------------CCChhHHHH-H
Q 019652 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (337)
Q Consensus 101 v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~-----~~~-----------------~~~~~~~l~-~ 156 (337)
+.++ .++++++.+.||..+.+++.++ +|++|++..+ ..+ ..+..+.+. .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5555 4567999999999999999875 7888887543 000 012222211 1
Q ss_pred cCCCCcEEEeeccCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCeeEEEEEECC---EEEE-EEEe-
Q 019652 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGVLFKVYIVGE---AIKV-VRRF- 222 (337)
Q Consensus 157 ~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQeFI~h~~d~KV~VIG~---~v~~-~~R~- 222 (337)
..++||+|+||..+. ++.+|.++.++++|... +.++++||||..++.+.|.++++ +++. ..|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~ 307 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDC 307 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeee
Confidence 247899999998754 46789999999887652 57899999999668999998865 3332 2321
Q ss_pred cCCCCccccccCCCceeeecCcccccccCCCCC-CCccccCCCChHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeEE
Q 019652 223 SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFY 300 (337)
Q Consensus 223 Slp~~~~~~~~~~~g~~~~~~~s~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~LGL-~l~GvDvi~~~~tg~~~~ 300 (337)
+..... ..... .+ +.. +++. ..+.+.++|.++.++||+ +.+++|++++..+| ++|
T Consensus 308 ~~~~~~-------~k~~~---~~-------P~~~l~~~-----~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~~ 364 (554)
T 1w96_A 308 SVQRRH-------QKIIE---EA-------PVTIAKAE-----TFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KFY 364 (554)
T ss_dssp EEEETT-------EEEEE---EE-------SCCSSCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CEE
T ss_pred eeEeec-------cceee---eC-------CCcCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEE
Confidence 110000 00000 00 111 1111 135678899999999999 56679999973234 689
Q ss_pred EEEecCCCCCC
Q 019652 301 VIDINYFPGYG 311 (337)
Q Consensus 301 VIDVN~fPg~~ 311 (337)
|+|||.=+|-.
T Consensus 365 ~iEiN~R~~g~ 375 (554)
T 1w96_A 365 FLELNPRLQVE 375 (554)
T ss_dssp EEEEECSCCTT
T ss_pred EEEeeCCCCcc
Confidence 99999977643
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.34 E-value=1.3e-11 Score=135.65 Aligned_cols=178 Identities=14% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCc
Q 019652 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (337)
Q Consensus 99 p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 175 (337)
-|++++ .++++++.+.||..+.+++.++ +|++|++. .+. +.+++.+. ...++||+|+||..+. +
T Consensus 117 ~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~--a~~igyPvVVKp~~g~---G 183 (1165)
T 2qf7_A 117 AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKM--AAAIGYPVMLKASWGG---G 183 (1165)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC---------------------------------------
T ss_pred cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHH--HHhcCCCEEEEeCCCC---C
Confidence 377775 6789999999999999999875 89999987 444 22233222 2358999999988754 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE---EEE-EEEecCCCCccccccCCCce
Q 019652 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA---IKV-VRRFSLPDVTKQDLSTSAGV 238 (337)
Q Consensus 176 sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~---v~~-~~R~Slp~~~~~~~~~~~g~ 238 (337)
+.+|.++.++++|.+. +.++++||||+.++.+.|.+++|. ++. ..|... .....+.
T Consensus 184 G~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s-------~~r~~~~ 256 (1165)
T 2qf7_A 184 GRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCS-------VQRRNQK 256 (1165)
T ss_dssp ------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEEEE-------EEETTEE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeeccc-------ceecccc
Confidence 6789999999887642 357999999996699999999763 332 233210 0000000
Q ss_pred eeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 239 FRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~l~-GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
. ...+ +. .+++.. .+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||||.-||..
T Consensus 257 ~--------~e~~-Pa~~l~~~~-----~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 257 V--------VERA-PAPYLSEAQ-----RQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPRIQVE 316 (1165)
T ss_dssp E--------EEEE-SCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred e--------EEec-ccccCCHHH-----HHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcCCCCC
Confidence 0 0000 11 121111 34678899999999999854 59999983245 69999999999854
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.30 E-value=3.1e-11 Score=133.00 Aligned_cols=227 Identities=17% Similarity=0.207 Sum_probs=106.1
Q ss_pred chhHHhhhhhcceEEEEecCCCC--------------C---------CC---------CCCceEEEEccCc-HHHHHHHH
Q 019652 46 QPKLEGLARNKGILFVAIDQNRP--------------L---------SD---------QGPFDIVLHKLTG-KEWRQILE 92 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~--------------l---------~~---------q~~fDvilhK~t~-~~~~~~l~ 92 (337)
..+++++|++.|++++.++.+.. + .+ +...|+|+.-... .+.. .+.
T Consensus 43 a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~-~~a 121 (1236)
T 3va7_A 43 AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENA-DFS 121 (1236)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCH-HHH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccH-HHH
Confidence 46789999999999999854321 0 00 1145666643321 0111 122
Q ss_pred HHHHhCCCceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcE-EEEecCCCChhHHHHHcCCCCcEEEeeccC
Q 019652 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIERDASSIPDVVLKAGLTLPLVAKPLVA 170 (337)
Q Consensus 93 ~y~~~~p~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~-~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 170 (337)
+..++ -|++++ .++++++.+.||..+.++|.++ +|++|++ .++. +.+++.+. ...++||+|+||..+
T Consensus 122 ~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~~--a~~iGyPvVVKP~~G 190 (1236)
T 3va7_A 122 DRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKEV--AKKLEYPVMVKSTAG 190 (1236)
T ss_dssp HHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC--------------------------------
T ss_pred HHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHHH--HHHcCCCEEEEeCCC
Confidence 22222 478776 8889999999999999999875 8999774 4443 22233222 235899999999764
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECC---EEEE-EEEe-cCCCCccccc
Q 019652 171 DGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGE---AIKV-VRRF-SLPDVTKQDL 232 (337)
Q Consensus 171 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~---~v~~-~~R~-Slp~~~~~~~ 232 (337)
+ ++.+|.++.++++|.+. +.++++||||..++.+.|.|++| .+.. ..|. |..
T Consensus 191 g---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~s~q------- 260 (1236)
T 3va7_A 191 G---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQ------- 260 (1236)
T ss_dssp ---------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEE-------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeeeeeee-------
Confidence 4 57789999999887642 35799999999449999999965 2332 2332 110
Q ss_pred cCCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCC
Q 019652 233 STSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 310 (337)
Q Consensus 233 ~~~~g~~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~ 310 (337)
..+... ...+ +. .+++.. .+.+.++|.++.+++|+. .++||++++.++| ++|+||||.=++-
T Consensus 261 -------r~~~k~--~e~~-Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~g 324 (1236)
T 3va7_A 261 -------RRNQKV--IEET-PAPNLPEAT-----RAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQV 324 (1236)
T ss_dssp -------ETTEEE--EEEE-SCSSCCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCCT
T ss_pred -------ecCcce--EEEc-CCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCCC
Confidence 001000 0000 11 121111 346789999999999996 6679999986444 7999999998753
No 65
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.26 E-value=1.6e-11 Score=128.21 Aligned_cols=175 Identities=17% Similarity=0.271 Sum_probs=83.2
Q ss_pred Cceee-ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcc
Q 019652 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (337)
Q Consensus 100 ~v~Vi-Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 176 (337)
|++++ .++++++.+.||..+.++|.++ +|++|++. .+. +.+++.+. ...++||+|+||..++ ++
T Consensus 99 Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~--a~~igyPvVvKp~~gg---gg 165 (681)
T 3n6r_A 99 GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKI--SNQIGYPVMIKASAGG---GG 165 (681)
T ss_dssp TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC--------------------------------------
T ss_pred CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHH--HHhcCCcEEEEECCCC---CC
Confidence 78887 8899999999999999999864 89999874 343 22233222 2358999999998754 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCeeEEEEEECCE----EEEEEEe-cCCCCccccccCCCce
Q 019652 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAGV 238 (337)
Q Consensus 177 h~m~iv~~~~~L~~l-------------~~p~vvQeFI~h~~d~KV~VIG~~----v~~~~R~-Slp~~~~~~~~~~~g~ 238 (337)
.+|.++.++++|.+. +.++++|+||+..+.+.|.|++|. +....|. |..
T Consensus 166 kGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s~q------------- 232 (681)
T 3n6r_A 166 KGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQ------------- 232 (681)
T ss_dssp -------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEECCCE-------------
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeeccee-------------
Confidence 799999999887652 358999999995599999999763 2333333 210
Q ss_pred eeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeEEEEEecCCCCCC
Q 019652 239 FRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 311 (337)
Q Consensus 239 ~~~~~~s~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~LGL~-l~GvDvi~~~~tg~~~~VIDVN~fPg~~ 311 (337)
..++... ..+ +. .+++.. .+.+.++|.++.+++|+. .++||++++. +| ++|++|||.=|+-.
T Consensus 233 -r~~~k~~--e~~-Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 233 -RRNQKVV--EEA-PSPFLDEAT-----RRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTRLQVE 296 (681)
T ss_dssp -ETTEECE--EEE-SCSSCCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECSCCTT
T ss_pred -ccCccEE--Eec-CCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccccCCC
Confidence 0000000 000 11 121111 346789999999999997 4459999985 34 68999999999744
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.82 E-value=4.1e-08 Score=93.72 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred chhHHhhhhhcceEEEEecCCCCCC--------C---CCC-c-------eEEEEccCcHHHHH--HHHHHHHhCCCceee
Q 019652 46 QPKLEGLARNKGILFVAIDQNRPLS--------D---QGP-F-------DIVLHKLTGKEWRQ--ILEEYRQTHPEVTVL 104 (337)
Q Consensus 46 ~~~l~~~a~~~Gi~~v~iD~~~~l~--------~---q~~-f-------DvilhK~t~~~~~~--~l~~y~~~~p~v~Vi 104 (337)
..-+..+|++.|+.++.+|.+.+-+ + ... | |+|..= -++.. .++.. +.-++++.
T Consensus 13 ~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe---~e~v~~~~l~~l--e~~~~p~~ 87 (320)
T 2pbz_A 13 SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPH---GSFVAYLGIEAI--EKAKARFF 87 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCB---TTHHHHSCHHHH--HTCCSCCB
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEec---ccchhHHHHHHH--HHcCCCcC
Confidence 3457889999999999999874221 1 112 2 221100 01111 12222 24578899
Q ss_pred ChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeC
Q 019652 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (337)
Q Consensus 105 Dp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 184 (337)
.+.+++....||...-+.|.++ +|++|++.. .+++ .++||+|+||..+. +++|..++.+
T Consensus 88 p~~~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~---ggkG~~~v~~ 146 (320)
T 2pbz_A 88 GNRRFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPR---GGSGHFIVEG 146 (320)
T ss_dssp SCSSGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C
T ss_pred CCHHHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCC---CCCCEEEECh
Confidence 9999999999998877888876 899999872 2121 48999999987743 6899999999
Q ss_pred hhhhhcc----CCCeEEEecccCCeeEEEEE----ECCEEE-EEEEecCCCCccccccCCCceeeecCc----ccccccC
Q 019652 185 QYSLKKL----EPPLVLQEFVNHGVLFKVYI----VGEAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRV----SCAAASA 251 (337)
Q Consensus 185 ~~~L~~l----~~p~vvQeFI~h~~d~KV~V----IG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~~----s~~~~~~ 251 (337)
++|... +.++++||||+ +..+-+-+ +-+++. +..+.-+-+ . +|.+..+.. +-.+.
T Consensus 147 -eel~~~~~~~~~~~IiEEfI~-g~~~~~~~f~~~~~g~~e~~~~~~r~e~-~-------~g~~~~p~~~~~~~~~G~-- 214 (320)
T 2pbz_A 147 -SELEERLSTLEEPYRVERFIP-GVYLYVHFFYSPILERLELLGVDERVLI-A-------DGNARWPVKPLPYTIVGN-- 214 (320)
T ss_dssp -EECSCCCC----CCEEEECCC-SCEEEEEEEEETTTTEEEEEEEEEEEET-T-------CSSSSSCCSCCCCCEEEE--
T ss_pred -HHHHHHHHhcCCCEEEEeeec-eEecceeEEeccccCceeEEEecceEEE-E-------CCeeecccCCCceeeecC--
Confidence 988754 25899999999 52222111 222222 222221211 1 111111000 00000
Q ss_pred CCCCCCccccCCCChHHHHHHHHHHHHHh------C-CcEEEEEEEEeCCCCCeEEEEEecC-CCC
Q 019652 252 DDADLDPCVAELPPRPLLERLAKELRRQL------G-LRLFNLDIIREHGTRDQFYVIDINY-FPG 309 (337)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~L------G-L~l~GvDvi~~~~tg~~~~VIDVN~-fPg 309 (337)
.+..+.+. ..+.+.++|.++.++| | ...+++| + .. +| +++|+|||. |+|
T Consensus 215 ~P~~~~~~-----~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 215 RAIALRES-----LLPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp EECEECGG-----GHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred CCCccCHH-----HHHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 01111111 1356788999999998 4 5677899 5 32 23 589999998 455
No 67
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6e-11 Score=93.94 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=64.8
Q ss_pred HHHhccHHHHHHHHHhccccCCCCCccCCcEE--EEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEEEeChhh
Q 019652 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (337)
Q Consensus 110 i~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 187 (337)
+..++||..+.++|.+ .+|++|++. .+. +.++..+.. ..++||+|+||..+. ++.++.++.++++
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 3457788887777764 489999986 553 222222222 247899999998754 4568999999987
Q ss_pred hhcc-------------CCCeEEEecccCCeeEEEEEEC
Q 019652 188 LKKL-------------EPPLVLQEFVNHGVLFKVYIVG 213 (337)
Q Consensus 188 L~~l-------------~~p~vvQeFI~h~~d~KV~VIG 213 (337)
|... +.++++||||+...++.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEecC
Confidence 6541 4689999999943788888876
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.77 E-value=1.7e-07 Score=90.80 Aligned_cols=235 Identities=13% Similarity=0.116 Sum_probs=129.9
Q ss_pred EEEEEecccccccccchhHHhhhhhcceEEEEecCCCCCC---CCCCceEEE-Ec-cCc---HHHH--------------
Q 019652 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS---DQGPFDIVL-HK-LTG---KEWR-------------- 88 (337)
Q Consensus 31 ~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~---~q~~fDvil-hK-~t~---~~~~-------------- 88 (337)
+||-.-+- ...-+..+|++.|++++.+|.+..-+ .....|-++ .- ..+ ....
T Consensus 20 ~I~ilGs~------l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~ 93 (361)
T 2r7k_A 20 TIATLGSH------TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHG 93 (361)
T ss_dssp EEEEESST------THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBH
T ss_pred EEEEECcH------HHHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCc
Confidence 36555443 23448889999999999999984321 112223322 22 222 2111
Q ss_pred ---H--HHHHHHHhCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcE
Q 019652 89 ---Q--ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPL 163 (337)
Q Consensus 89 ---~--~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~ 163 (337)
. .+... .+.-++++.-+..+++...||...-+.|.++ +||+|++ +. +. ..+.||+
T Consensus 94 ~~v~~~gl~~l-~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~---------~e~~~Pv 153 (361)
T 2r7k_A 94 SFIAYCGLDNV-ENSFLVPMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SP---------EDIDGTV 153 (361)
T ss_dssp HHHHHHCHHHH-HHTCCSCBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SG---------GGCCSCE
T ss_pred hhhhHHHHHHH-HHHcCCCcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CH---------HHcCCCE
Confidence 1 11121 2235677777777788888888777888865 8999986 32 21 1246999
Q ss_pred EEeeccCCCCCcceeeEEEeChhhhhcc------------C--CCeEEEecccCCeeEEE---E-EECCEEE--EEEEe-
Q 019652 164 VAKPLVADGSAKSHELSLAYDQYSLKKL------------E--PPLVLQEFVNHGVLFKV---Y-IVGEAIK--VVRRF- 222 (337)
Q Consensus 164 VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------~--~p~vvQeFI~h~~d~KV---~-VIG~~v~--~~~R~- 222 (337)
|+||..+ ++++|+.++.+.+++.+. . .++++||||+ |..+-+ | ++++++. .+.++
T Consensus 154 VVK~~~~---a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~-G~e~s~~~f~~~~~~~~e~~~id~r~ 229 (361)
T 2r7k_A 154 IVKFPGA---RGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV-GTNFCIHYFYSPLKDEVELLGMDKRY 229 (361)
T ss_dssp EEECSCC---CC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC-SEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEeeCCC---CCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc-eEEeeEEEEecccCCeeEEEEecceE
Confidence 9997653 368999999999876542 2 4799999999 622222 1 1244322 22222
Q ss_pred -cC----CCCcccc-ccCC-CceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-------CCcEEEEE
Q 019652 223 -SL----PDVTKQD-LSTS-AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-------GLRLFNLD 288 (337)
Q Consensus 223 -Sl----p~~~~~~-~~~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~L-------GL~l~GvD 288 (337)
+- -.+...+ +... ...|. -.+. .+..+++.. .+.+.++|.++.++| ....++++
T Consensus 230 ~~~~dgi~~~~~~~~~~~~~~p~~v-----~~G~--~Pa~l~~~~-----~~~a~~~a~~v~~al~~~~~~~~~G~~~vE 297 (361)
T 2r7k_A 230 ESNIDGLVRIPAKDQLEMNINPSYV-----ITGN--IPVVIRESL-----LPQVFEMGDKLVAKAKELVPPGMIGPFCLQ 297 (361)
T ss_dssp EEEHHHHTTSCHHHHHTCCCCCCEE-----EEEE--EECCCCGGG-----HHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred EeecccceecchhhhhcccCCCceE-----EecC--cCCcCCHHH-----HHHHHHHHHHHHHHHHhhccCCccceEEEE
Confidence 10 0000000 0000 00010 0000 012222111 356789999999998 36677899
Q ss_pred EEEeCCCCCeEEEEEecCCCC
Q 019652 289 IIREHGTRDQFYVIDINYFPG 309 (337)
Q Consensus 289 vi~~~~tg~~~~VIDVN~fPg 309 (337)
++++. +| +++|+|||.=||
T Consensus 298 ~fvt~-dg-~i~V~EIapR~g 316 (361)
T 2r7k_A 298 SLCNE-NL-ELVVFEMSARVD 316 (361)
T ss_dssp EEECT-TS-CEEEEEEESSBC
T ss_pred EEEcC-CC-CEEEEEEcCCCC
Confidence 99864 34 589999999444
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.42 E-value=4.1e-06 Score=81.51 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=89.6
Q ss_pred HHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHH--hCCC-ceeeChHHHHHHhccHHHHHHHHHh
Q 019652 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ--THPE-VTVLDPPYAIQHLHNRQSMLQCVAD 125 (337)
Q Consensus 49 l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~--~~p~-v~ViDp~~ai~~~~dR~~~~~~L~~ 125 (337)
..++.+++|. ...++.+ -..+|++..-.... -|.. .+|+ .-.||-......+..|..+.+.|.+
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~-------p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~ 86 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRL-------PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKT 86 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSC-------CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCC-------CHHHhccCCCcceEEeecCCcccccccHHHHHHHHH
Confidence 4456677884 2224433 34799998643221 1221 2355 3678888888999999999998875
Q ss_pred ccccCCCCCccCCcEEEE-ecCC--------------------CChhHHH------HHcCCCCcEEEeeccCCCCCccee
Q 019652 126 MNLSNSYGKVDVPRQLVI-ERDA--------------------SSIPDVV------LKAGLTLPLVAKPLVADGSAKSHE 178 (337)
Q Consensus 126 ~~l~~~~~~I~~P~~~~~-~~~~--------------------~~~~~~l------~~~~l~fP~VvKp~~a~Gs~~sh~ 178 (337)
..... ...=..|++.++ -.+- ++....+ ...+-+-++|+||..+ + .+.|
T Consensus 87 ~~~~~-~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~--s-rG~G 162 (380)
T 3tig_A 87 SPELT-ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSG--A-KGEG 162 (380)
T ss_dssp CHHHH-TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------C
T ss_pred hhhcc-cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCcc--C-CCCC
Confidence 31001 112347777666 2110 0111111 2245678999998663 3 6788
Q ss_pred eEEEeChhhhhcc----CCCeEEEeccc-------CC--eeEEEEEE
Q 019652 179 LSLAYDQYSLKKL----EPPLVLQEFVN-------HG--VLFKVYIV 212 (337)
Q Consensus 179 m~iv~~~~~L~~l----~~p~vvQeFI~-------h~--~d~KV~VI 212 (337)
+.++.+.+++.+. ..++|+|+||. .| +|+|+||+
T Consensus 163 I~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 163 ILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 9999888887643 67899999996 35 79999999
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.29 E-value=6.8e-07 Score=81.13 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=68.5
Q ss_pred hccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCC--CCCcceeeEE-EeChhhhh
Q 019652 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (337)
Q Consensus 113 ~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~--Gs~~sh~m~i-v~~~~~L~ 189 (337)
.+||..+.++|++. +|++|++.++.+ .++.... ...++||+|+||..++ |-..+.|+.+ +.++++|.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~-~~ea~~~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKT-LDEALEY--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESS-HHHHHHH--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 47999999999854 899999998852 2222221 2347999999998752 1114667777 79998876
Q ss_pred cc----------------CCCeEEEecccCCeeEEEEEECCE
Q 019652 190 KL----------------EPPLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 190 ~l----------------~~p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
+. ..++++|+||++++++-|.|++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCC
Confidence 42 167999999997799999999874
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.56 E-value=0.00014 Score=71.25 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=64.5
Q ss_pred HHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccC-CCCCcceeeEEEeChhhhhcc----
Q 019652 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL---- 191 (337)
Q Consensus 117 ~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l---- 191 (337)
+..-++|++. +|++|++.++.+ .++..+.. ..++||+|+||... .|...+.|+.++.+++++.+.
T Consensus 6 ~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~aa--~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILARY-------GVPVPPGKVAYT-PEEAKRIA--EEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 4556777754 899999998863 22233222 24779999999772 233356799999999877542
Q ss_pred ---------CCCeEEEecccCCeeEEEEEECCE
Q 019652 192 ---------EPPLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 192 ---------~~p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
...+++|||+++++++-|.|+.|.
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCEEEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecCCeeEEEEEEecC
Confidence 257999999998899999999774
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.52 E-value=0.00017 Score=70.29 Aligned_cols=92 Identities=10% Similarity=0.085 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCc-EEEeeccCC-CCCcceeeEEEeChhhhhcc-
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKKL- 191 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l- 191 (337)
+.+.+-++|++. +|++|++.++.+ .++..... ..++|| +|+||.... |-..+.++.++.+++++.+.
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFARY-------GLPAPVGYACTT-PREAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CcCCCCeeEECC-HHHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 566777888864 899999998863 22232222 247899 999998742 22257799999998776531
Q ss_pred -------------------CCCeEEEecccCCeeEEEEEECCEE
Q 019652 192 -------------------EPPLVLQEFVNHGVLFKVYIVGEAI 216 (337)
Q Consensus 192 -------------------~~p~vvQeFI~h~~d~KV~VIG~~v 216 (337)
..++++|+|+++++++-|.++.|..
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecc
Confidence 1369999999988999999997743
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.27 E-value=0.00053 Score=67.06 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCC-cEEEeeccCCCCC-cc-------eeeEEEeCh
Q 019652 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSA-KS-------HELSLAYDQ 185 (337)
Q Consensus 115 dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs~-~s-------h~m~iv~~~ 185 (337)
+.+.+-++|++. +|++|++.++.+ .++..+.. ..++| |+|+||...+|.. .+ -++.++.++
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~~ea~~~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSDN-------GVKVQRFFVADT-ANEALEAA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHHH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 345667778764 899999998853 22333322 23789 8999997544431 11 568899998
Q ss_pred hhhhcc--------------------CCCeEEEecccCCeeEEEEEECCE
Q 019652 186 YSLKKL--------------------EPPLVLQEFVNHGVLFKVYIVGEA 215 (337)
Q Consensus 186 ~~L~~l--------------------~~p~vvQeFI~h~~d~KV~VIG~~ 215 (337)
+++.+. ...+++|+|+++++++-|.++.|+
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEcc
Confidence 776531 125899999998899999999774
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=96.85 E-value=0.0081 Score=61.90 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=104.6
Q ss_pred EEEEEecccccccccchhHHhhhhhcceEEEEec-CCCCCC--CCC--------CceEEEEccCcHHHH-HHHH------
Q 019652 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAID-QNRPLS--DQG--------PFDIVLHKLTGKEWR-QILE------ 92 (337)
Q Consensus 31 ~VGy~l~~kK~~~~~~~~l~~~a~~~Gi~~v~iD-~~~~l~--~q~--------~fDvilhK~t~~~~~-~~l~------ 92 (337)
+|-.+..+--.......-|.++|++.|++...++ +.. +. ..| ++|+|+ |+..-+|. +.+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~ 458 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDRE 458 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---C
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccc
Confidence 4444433322333444558889999999999998 665 32 122 666666 55543342 2210
Q ss_pred ---------------HHHH--hCCCceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHH
Q 019652 93 ---------------EYRQ--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL 155 (337)
Q Consensus 93 ---------------~y~~--~~p~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~ 155 (337)
+|.+ ...++.+|+|+.++. +.||..+.-+.. +. + .++ -.+++. ++ ... . +.
T Consensus 459 ~~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKailalLw~-l~--p-~hp-~LLpT~-f~--~~~--~-l~ 526 (619)
T 2io8_A 459 FAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKAILPILWS-LF--P-HHR-YLLDTD-FT--VND--E-LV 526 (619)
T ss_dssp CSSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTTHHHHHHH-HS--T-TCT-TCCCEE-SS--CCH--H-HH
T ss_pred cccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHHHHHHHHH-hC--C-CCC-CCCCee-ec--CCc--c-cc
Confidence 2332 346899999999988 899987554443 21 1 112 123343 21 111 1 21
Q ss_pred HcCCCCcEEEeeccCCCCCcceeeEEEeC-hhhhhcc-----CCCeEEEecccCC-ee-----EEEEEECCEEEEE-EEe
Q 019652 156 KAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSLKKL-----EPPLVLQEFVNHG-VL-----FKVYIVGEAIKVV-RRF 222 (337)
Q Consensus 156 ~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~L~~l-----~~p~vvQeFI~h~-~d-----~KV~VIG~~v~~~-~R~ 222 (337)
. + ..|.||+.+. ++.+|.++.. .+.+.+. +.++|+|+|++-. ++ +-+|+|||+.... .|.
T Consensus 527 ~-~---~yV~KPi~gR---eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~ 599 (619)
T 2io8_A 527 K-T---GYAVKPIAGR---CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_dssp H-H---CEEEEETTCC---TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred c-C---CEEEccCCCC---CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEec
Confidence 1 1 5999999964 5667888865 2222221 5789999999866 66 9999999998854 777
Q ss_pred c
Q 019652 223 S 223 (337)
Q Consensus 223 S 223 (337)
+
T Consensus 600 ~ 600 (619)
T 2io8_A 600 D 600 (619)
T ss_dssp E
T ss_pred C
Confidence 6
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=91.54 E-value=2.1 Score=44.16 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=83.3
Q ss_pred hhHHhhhhhcceEEEEec-CCCCCC--CC--------CCceEEEEccCcHHHHHHH-------------------HHHHH
Q 019652 47 PKLEGLARNKGILFVAID-QNRPLS--DQ--------GPFDIVLHKLTGKEWRQIL-------------------EEYRQ 96 (337)
Q Consensus 47 ~~l~~~a~~~Gi~~v~iD-~~~~l~--~q--------~~fDvilhK~t~~~~~~~l-------------------~~y~~ 96 (337)
.-|.+.|++.|++...++ +.. |. +. .++|+|+ |+..-+|.-.- .+|..
T Consensus 413 ~yL~~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~ 490 (652)
T 2vob_A 413 LYCMQAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLCD 490 (652)
T ss_dssp HHHHHHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHH
T ss_pred HHHHHHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhcccccccccccCccchhHHHH
Confidence 347889999999999987 654 42 22 3778877 66654443211 02332
Q ss_pred --hCC--CceeeChHHHHHHhccHHHHHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCC
Q 019652 97 --THP--EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (337)
Q Consensus 97 --~~p--~v~ViDp~~ai~~~~dR~~~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 172 (337)
... .+.+|+|+-++ .+.||.. +.+|.++.- . ++--.|.+ + +... .+... ..|.||+.+-
T Consensus 491 ~l~~~~~~v~~ieP~wk~-LlsNKai-LalLW~l~p--~-hp~LLpt~--f--~~~~---~~~~~----~yV~KPi~gR- 553 (652)
T 2vob_A 491 LLLGDDWEILYFEPMWKV-IPSNKAI-LPMIYHNHP--E-HPAILKAE--Y--ELTD---ELRKH----GYAKKPIVGR- 553 (652)
T ss_dssp HHSSSCTTSEEESCGGGG-TTTSTTH-HHHHHHHCT--T-CTTBCCEE--S--SCCH---HHHHH----CEEEEECC---
T ss_pred HHhcCCCceEEeChhHHH-hhcCHHH-HHHHHhccc--C-CCCCCchh--h--cCCC---ccccC----CeEeccCCCC-
Confidence 235 79999999765 4568765 444554311 1 22223333 2 2211 11111 5999999864
Q ss_pred CCcceeeEEEeChhh-hhc-----cCCCeEEEecccC-----C-eeEEEEEECCEEEEE-EEec
Q 019652 173 SAKSHELSLAYDQYS-LKK-----LEPPLVLQEFVNH-----G-VLFKVYIVGEAIKVV-RRFS 223 (337)
Q Consensus 173 s~~sh~m~iv~~~~~-L~~-----l~~p~vvQeFI~h-----~-~d~KV~VIG~~v~~~-~R~S 223 (337)
++.++.++..... +.+ .+.++|+|+|++- . ..+=+|++|++.... .|.+
T Consensus 554 --eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 554 --VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp ---------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred --CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 4556777643222 111 2578999999962 3 788899999998854 7775
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=91.39 E-value=0.096 Score=52.16 Aligned_cols=130 Identities=17% Similarity=0.279 Sum_probs=73.8
Q ss_pred CCceEEEEccCcHHH-------------HHHHHHHHHhCCCceeeChHHHHHHhccHH------HHHHHHHhccccCCCC
Q 019652 73 GPFDIVLHKLTGKEW-------------RQILEEYRQTHPEVTVLDPPYAIQHLHNRQ------SMLQCVADMNLSNSYG 133 (337)
Q Consensus 73 ~~fDvilhK~t~~~~-------------~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~------~~~~~L~~~~l~~~~~ 133 (337)
.++|+|.-|+.++.. -..++.|.+. +|.++|++.+- .+.||. .+.+.+-. .. -
T Consensus 268 ~~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~G--~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lg----Ee-~ 339 (474)
T 3n6x_A 268 KRVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRNG--GVTLANAVGTG-VADDKDTYIYVPEMIRFYLG----EE-P 339 (474)
T ss_dssp EEECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHTT--SCEEESCTTTH-HHHSTTTGGGHHHHHHHHHC----SC-C
T ss_pred eEEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHcC--CEEEeCCCchh-hhcCcHHHHHhHHHHHHhCC----Hh-h
Confidence 389999999965411 1356667665 89999999885 788885 22222221 11 1
Q ss_pred Cc-cCCcEEEEecCCCChhHHHHHcCCCCcEEEeeccCCCCCcceeeEE--EeChhhhhc-----cCCC--eEEEecccC
Q 019652 134 KV-DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL--AYDQYSLKK-----LEPP--LVLQEFVNH 203 (337)
Q Consensus 134 ~I-~~P~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i--v~~~~~L~~-----l~~p--~vvQeFI~h 203 (337)
-+ .+|.+... +.+.....+.... -+|+||..+.| +.+|.+ -.+.+++.+ ...| +|+||+|.-
T Consensus 340 il~~VpT~~c~--~~~~~~~vl~~l~---~lViKp~~g~g---g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~l 411 (474)
T 3n6x_A 340 ILSNVPTYQLS--KADDLKYVLDNLA---ELVVKEVQGSG---GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLAL 411 (474)
T ss_dssp SSEECCCEETT--SHHHHHHHHHSGG---GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCC
T ss_pred hccCCCceecC--CHHHHHHHHhchh---heEEEecCCCC---CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCC
Confidence 11 35655421 1222223333323 79999988543 455544 223344443 2567 999999962
Q ss_pred C--------------eeEEEEEE-CCEEEE
Q 019652 204 G--------------VLFKVYIV-GEAIKV 218 (337)
Q Consensus 204 ~--------------~d~KV~VI-G~~v~~ 218 (337)
. +++|+|++ |+.+.+
T Consensus 412 s~~P~~~~~~~~~r~~dlR~F~~~g~~~~v 441 (474)
T 3n6x_A 412 STCPTLVETGIAPRHVDLRPFVLSGKTVSL 441 (474)
T ss_dssp CEEEEEETTEEEEEEEEEECEEEESSSEEE
T ss_pred cccceeeCCceeeeeEEEEEEEEcCCceEE
Confidence 1 58899988 554443
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=80.05 E-value=7.7 Score=37.88 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHH-cCCC-CcEEEeeccCC-CCCcceeeEEEeChhhhhcc----
Q 019652 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK-AGLT-LPLVAKPLVAD-GSAKSHELSLAYDQYSLKKL---- 191 (337)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~-~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l---- 191 (337)
.-.+|.++..... ..+..|++.++.+ ..+..++... ..++ ||+|+|+.+.. |-....++.+..++++..+.
T Consensus 11 ~K~ll~~~~~~~~-~~~~~~~~~~~~~-~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~m 88 (425)
T 3mwd_A 11 GKELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (425)
T ss_dssp HHHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhccccC-CccCCcceEEeCC-CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 3455665432100 1244556777753 3344443332 3576 99999997743 44467789888888776542
Q ss_pred -------C------CCeEEEecccCC--eeEEEEEECCE
Q 019652 192 -------E------PPLVLQEFVNHG--VLFKVYIVGEA 215 (337)
Q Consensus 192 -------~------~p~vvQeFI~h~--~d~KV~VIG~~ 215 (337)
. .-+++|++++|+ .++-+.+.-|+
T Consensus 89 l~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecC
Confidence 0 237999999874 88888888654
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=56.44 E-value=30 Score=36.64 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred HHHHHHhccccCCCCCccCCcEEEEecCCCChhHHHHH-cCCC-CcEEEeeccCC-CCCcceeeEEEeChhhhhcc----
Q 019652 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK-AGLT-LPLVAKPLVAD-GSAKSHELSLAYDQYSLKKL---- 191 (337)
Q Consensus 119 ~~~~L~~~~l~~~~~~I~~P~~~~~~~~~~~~~~~l~~-~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l---- 191 (337)
--++|.++..+.. ..+..|++.++.. ..+..++... ..++ +|+|+|+.+.. |-....++.+..++++.++.
T Consensus 11 aK~ll~~~~~~~~-~~~~~~~~~~v~~-~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~i 88 (829)
T 3pff_A 11 GKELLYKFICTTS-AIQNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (829)
T ss_dssp HHHHHHHHCCCSS-CBCSTTCCEEECT-TCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhCcccc-ccccCCceEEeCC-CCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHH
Confidence 3455665432101 1233566777753 3334433332 2354 89999997654 33456788888898776542
Q ss_pred -----C--------CCeEEEecccCC--eeEEEEEECCE
Q 019652 192 -----E--------PPLVLQEFVNHG--VLFKVYIVGEA 215 (337)
Q Consensus 192 -----~--------~p~vvQeFI~h~--~d~KV~VIG~~ 215 (337)
. .-+++|++++|+ ++|-+.+.-|+
T Consensus 89 Lg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEET
T ss_pred HHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecC
Confidence 1 237999999875 88888888654
No 79
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.80 E-value=83 Score=24.35 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=48.6
Q ss_pred ccccchhHHhhhhhcceEEEEe--cCCCCCCC-CCCceEEEEccCcHHHHHHHHHHHHhC-CCceeeChHHHHHHhccHH
Q 019652 42 KSFLQPKLEGLARNKGILFVAI--DQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQTH-PEVTVLDPPYAIQHLHNRQ 117 (337)
Q Consensus 42 ~~~~~~~l~~~a~~~Gi~~v~i--D~~~~l~~-q~~fDvilhK~t~~~~~~~l~~y~~~~-p~v~ViDp~~ai~~~~dR~ 117 (337)
.++.-.++.++|+++|+++... .... +.+ ...||+||.=-.-......+++..+.+ =.+.|||+-+-....+|=-
T Consensus 19 Tsllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~ 97 (108)
T 3nbm_A 19 SAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPS 97 (108)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCHH
Confidence 3445567888999999887663 3443 333 357999995222222223444444332 2478899987776567766
Q ss_pred HHHHHH
Q 019652 118 SMLQCV 123 (337)
Q Consensus 118 ~~~~~L 123 (337)
..++..
T Consensus 98 ~vl~~~ 103 (108)
T 3nbm_A 98 KALQFV 103 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 80
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=31.28 E-value=92 Score=28.77 Aligned_cols=89 Identities=12% Similarity=0.203 Sum_probs=56.2
Q ss_pred ceEEEEEEecc-cccccccchhHHhhhhhcceEEEEecCCCCCCCCC-------------CceEEEEccCcHHHHHHHHH
Q 019652 28 KLVVVGYALTS-KKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG-------------PFDIVLHKLTGKEWRQILEE 93 (337)
Q Consensus 28 ~~~~VGy~l~~-kK~~~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~-------------~fDvilhK~t~~~~~~~l~~ 93 (337)
+..+|+-.+.+ +=+.+. +|..++.+.|-+.+.++++..-...| .+|+|..|-......+.+
T Consensus 35 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~l-- 109 (304)
T 3r7f_A 35 TGKFAANLFFEPSTRTRF---SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEEL-- 109 (304)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHH--
T ss_pred CCCEEEEEecCCChhHHH---hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHH--
Confidence 46778887765 323322 38889999999999999865222222 369999998765333333
Q ss_pred HHHhCCCceeeChHH-----HHHHhccHHHHHHHH
Q 019652 94 YRQTHPEVTVLDPPY-----AIQHLHNRQSMLQCV 123 (337)
Q Consensus 94 y~~~~p~v~ViDp~~-----ai~~~~dR~~~~~~L 123 (337)
+++.+++|||-.+ -.+.+.|=+.+.+.+
T Consensus 110 --a~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~ 142 (304)
T 3r7f_A 110 --VSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEF 142 (304)
T ss_dssp --HHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHH
T ss_pred --HHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHh
Confidence 3456799998754 244455545555443
No 81
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=30.74 E-value=21 Score=27.59 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=41.2
Q ss_pred cccchhHHhhhhhcceEE--EEecCCCCCCC-CCCceEEEEccCcHHHHHHHHHHHHhCCCceeeChHHHHHHhccHHHH
Q 019652 43 SFLQPKLEGLARNKGILF--VAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~~--v~iD~~~~l~~-q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViDp~~ai~~~~dR~~~ 119 (337)
|+.-..+.++++++|+++ ...+.+. +.+ ...+|+||.=-.-......+++..... +++|||+.+-. .+|--..
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~~~~~-~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~-~v~vI~~~~yg--~~~g~~v 92 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAFPETL-AGEKGQNADVVLLGPQIAYMLPEIQRLLPNK-PVEVIDSLLYG--KVDGLGV 92 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEECSSS-TTHHHHHCSEEEECTTSGGGHHHHHHHSSSS-CCCBCCHHHHT--TTCTTHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhccCCCEEEEccchhhhHHHHHHHhcCC-CceEECHHHcc--CCCHHHH
Confidence 345557888999999754 4445554 222 247899993222121223333322233 59999977653 2554444
Q ss_pred HH
Q 019652 120 LQ 121 (337)
Q Consensus 120 ~~ 121 (337)
++
T Consensus 93 l~ 94 (106)
T 1e2b_A 93 LK 94 (106)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 82
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.94 E-value=80 Score=27.12 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=35.2
Q ss_pred CceEEEEEEecccccc--cccchhHHhhhhhcceEEEEecCCCCCCCC---------CCceEEE
Q 019652 27 SKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVL 79 (337)
Q Consensus 27 ~~~~~VGy~l~~kK~~--~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q---------~~fDvil 79 (337)
.+..+||+.++.-.-. .-....+.++|+++|+++...+.+ ..+.| ..+|.||
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 3567899999763211 112334677899999999999887 44432 4789888
No 83
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.05 E-value=82 Score=27.18 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=39.8
Q ss_pred ceEEEEEEeccccccc--ccchhHHhhhhhcceEEEEecCCCCCCCCCCceEEEEccCcHHHHHHHHHHHHhCCCceeeC
Q 019652 28 KLVVVGYALTSKKTKS--FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (337)
Q Consensus 28 ~~~~VGy~l~~kK~~~--~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~ViD 105 (337)
+..+||+.++.---.- -....+.++|+++|+++...+.... .....+.++.+.+...+-+++-
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~l~~~~vdgiIi~ 68 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN---------------DQTQVSQIQTLIAQKPDAIIEQ 68 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC---------------HHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC---------------HHHHHHHHHHHHHcCCCEEEEe
Confidence 4578999998633111 1234577789999999988876531 1222345555666666666665
Q ss_pred hH
Q 019652 106 PP 107 (337)
Q Consensus 106 p~ 107 (337)
|.
T Consensus 69 ~~ 70 (291)
T 3l49_A 69 LG 70 (291)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 84
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.47 E-value=1.4e+02 Score=22.64 Aligned_cols=79 Identities=27% Similarity=0.310 Sum_probs=45.6
Q ss_pred cccchhHHhhhhhcceE--EEEecCCCCCCC-CCCceEEEEccCcHHHHHHHHHHHH-hCCCceeeChHHHHHHhccHHH
Q 019652 43 SFLQPKLEGLARNKGIL--FVAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQS 118 (337)
Q Consensus 43 ~~~~~~l~~~a~~~Gi~--~v~iD~~~~l~~-q~~fDvilhK~t~~~~~~~l~~y~~-~~p~v~ViDp~~ai~~~~dR~~ 118 (337)
++...++.++++++|++ +...+... +.+ ...+|+||.=..-......+++... ..-.+.+|||..-. .+|.-.
T Consensus 18 Sll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~ 94 (109)
T 2l2q_A 18 SMLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEK 94 (109)
T ss_dssp CHHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHH
Confidence 35666788899999975 44555544 222 3579999853322222233333322 23347779998774 467766
Q ss_pred HHHHHH
Q 019652 119 MLQCVA 124 (337)
Q Consensus 119 ~~~~L~ 124 (337)
.++.+.
T Consensus 95 vl~~i~ 100 (109)
T 2l2q_A 95 VLQLAI 100 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 85
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=27.16 E-value=65 Score=27.79 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCceEEEEEEeccc-ccccc---cchhHHhhhhhcceEEEEecCC
Q 019652 26 QSKLVVVGYALTSK-KTKSF---LQPKLEGLARNKGILFVAIDQN 66 (337)
Q Consensus 26 ~~~~~~VGy~l~~k-K~~~~---~~~~l~~~a~~~Gi~~v~iD~~ 66 (337)
+.+..+||+.++.. -...| ....+.++|+++|+++...+..
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 60 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK 60 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44567999998762 11122 2344667889999998877654
No 86
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.31 E-value=1.1e+02 Score=26.31 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCceEEEEEEeccccc--ccccchhHHhhhhhcceEEEEecCCC
Q 019652 26 QSKLVVVGYALTSKKT--KSFLQPKLEGLARNKGILFVAIDQNR 67 (337)
Q Consensus 26 ~~~~~~VGy~l~~kK~--~~~~~~~l~~~a~~~Gi~~v~iD~~~ 67 (337)
+.+..+||+.++.-.- -.-....+.++|+++|+++...+...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4456799999976421 11123346778899999998877653
No 87
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=24.24 E-value=1.5e+02 Score=26.38 Aligned_cols=58 Identities=5% Similarity=0.007 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhccCCCcccCCCceEEEEEEecc-cccc--cccchhHHhhhhhcceEEEEe
Q 019652 6 EEIEEQTREEELLSFPQTQQQSKLVVVGYALTS-KKTK--SFLQPKLEGLARNKGILFVAI 63 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~VGy~l~~-kK~~--~~~~~~l~~~a~~~Gi~~v~i 63 (337)
+.|.+-++++.--..+......+..+||+.++. -.-. .-....+.++|+++|+++...
T Consensus 20 ~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 80 (342)
T 1jx6_A 20 NLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLN 80 (342)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344444444443222222234567899999875 2211 112335677889999877655
No 88
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.58 E-value=58 Score=28.62 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCCceEEEEEEecccc----cccc---cchhHHhhhhhcceEEEEecCCC
Q 019652 25 QQSKLVVVGYALTSKK----TKSF---LQPKLEGLARNKGILFVAIDQNR 67 (337)
Q Consensus 25 ~~~~~~~VGy~l~~kK----~~~~---~~~~l~~~a~~~Gi~~v~iD~~~ 67 (337)
.+.+..+||+.++... ...| ....+.++|+++|+.+...+.+.
T Consensus 18 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 67 (305)
T 3huu_A 18 ITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSEN 67 (305)
T ss_dssp ---CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSS
T ss_pred hhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3455779999988721 1111 12346678899999998876543
No 89
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=21.24 E-value=68 Score=31.65 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.5
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEecC
Q 019652 281 GLRLFNLDIIREHGTRDQFYVIDINY 306 (337)
Q Consensus 281 GL~l~GvDvi~~~~tg~~~~VIDVN~ 306 (337)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 4789999999986 45 699999996
No 90
>2fv4_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; NMR {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=20.86 E-value=2.5e+02 Score=20.54 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCcEEE-EE-EEEeCC-CCCeEEEEEecCCCCCCCCccchHHHHHHHHHHHH
Q 019652 270 ERLAKELRRQLGLRLFN-LD-IIREHG-TRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQ 329 (337)
Q Consensus 270 ~~lA~~l~~~LGL~l~G-vD-vi~~~~-tg~~~~VIDVN~fPg~~gv~~~~~~l~~~l~~~i~ 329 (337)
..|=.++.+.||+.+-| .+ +++.++ +| ..-|+++. |+| .+| -.+++||+++.
T Consensus 22 ~~LKLkLYrsLGv~ld~~~~k~lI~n~~~~-dv~vv~id--~k~---S~f--FytnyiWd~L~ 76 (77)
T 2fv4_B 22 NILKLKLYRSLGVILDLENDQVLINRKNDG-NIDILPLD--NNL---SDF--YKTKYIWERLG 76 (77)
T ss_dssp HHHHHHHHHHTTEEEETTTTEEEEECSSSS-CEEEEECC--CTT---THH--HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCEEEecCccEEEEEeCCCC-ceeEEEcC--CCc---chH--HHHHHHHHHhc
Confidence 34556799999988442 11 344333 44 34566665 233 455 47899999875
No 91
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=20.50 E-value=2.9e+02 Score=23.41 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=43.5
Q ss_pred CceEEEEEEecccccc--cccchhHHhhhhhcceEEEEecCCCCCCCCC--CceEEEEccCcHHHHHHHHHHHHhCCCce
Q 019652 27 SKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (337)
Q Consensus 27 ~~~~~VGy~l~~kK~~--~~~~~~l~~~a~~~Gi~~v~iD~~~~l~~q~--~fDvilhK~t~~~~~~~l~~y~~~~p~v~ 102 (337)
.+..+||+.++.-.-. .-....+.+.|+++|+++...+.+...+.+. .+|.||.=-.+... ..++...+..-.++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV 84 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFPT-KEIEKFAERGHSIV 84 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTSCH-HHHHHHHHTTCEEE
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCCCCH-HHHHHHHhcCCCEE
Confidence 4567899998752211 1122346678899999998887654333332 68987764332111 23333333322355
Q ss_pred eeCh
Q 019652 103 VLDP 106 (337)
Q Consensus 103 ViDp 106 (337)
++|.
T Consensus 85 ~~~~ 88 (277)
T 3cs3_A 85 VLDR 88 (277)
T ss_dssp ESSS
T ss_pred EEec
Confidence 5553
Done!