RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019652
(337 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 324 bits (832), Expect = e-110
Identities = 103/330 (31%), Positives = 164/330 (49%), Gaps = 18/330 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
Q K VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 13 QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72
Query: 84 ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
E +EY HPE VLDP AI+ L +R + + +
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
++ P + + ++ K GLT P + K VA G+ SHE+++ ++Q L
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191
Query: 191 LEPPLVLQEFVNH-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 249
++PP V+Q F+NH VL+KV++VGE+ VV+R SL + + + F VS +
Sbjct: 192 IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPES 251
Query: 250 SADDADLDPC--VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYF 307
S+ +LD V E P ++ L++ LR+ LG+ LF +DII + T Q VIDIN F
Sbjct: 252 SSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAF 310
Query: 308 PGYGKMPEYEHIFTDFLLSLTQSRYKKKSC 337
PGY + E+ + + ++ Q + +
Sbjct: 311 PGYEGVSEFFTDLLNHIATVLQGQSTAMAA 340
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 297 bits (761), Expect = e-100
Identities = 60/327 (18%), Positives = 127/327 (38%), Gaps = 27/327 (8%)
Query: 23 TQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82
+ + V + L K K+ + + + L D+ P I+ +
Sbjct: 5 SMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRT 64
Query: 83 TGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 141
+ + +Y + HP+V L+ + +R+ + + + +P
Sbjct: 65 HPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSF 117
Query: 142 VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV 201
++ + ++ L LP + KP A G+ +H++ + +Q + + P + Q ++
Sbjct: 118 SVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYI 176
Query: 202 NH-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLST-------SAGVFRFPRV--------- 244
NH + KV+ +G +K R SLP+V + + + + +P
Sbjct: 177 NHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIE 236
Query: 245 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDI 304
+ A DP + L + LA ++R LG++L +D I+E+ + V+D+
Sbjct: 237 NSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVDV 295
Query: 305 NYFPGYGKMPEYEHIFTDFLLSLTQSR 331
N FP YG +++ L T+
Sbjct: 296 NVFPSYGGKVDFDWFVEKVALCYTEVA 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 2e-10
Identities = 63/421 (14%), Positives = 126/421 (29%), Gaps = 115/421 (27%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKL-----VVVGYALTSKKTKSFLQPKLEGLARNKGI 58
+ I+ + R+ +++ +Q+ +L V Y ++ + L+ L L K +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 59 LF----------VAID--QNRPLSDQGPFDIVLHKLT-GK--EWRQILEE----YRQTHP 99
L VA+D + + + F I L +LE Q P
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 100 EVTVL-----DPPYAIQHLHNRQSMLQC-------------VADMNLSNSYGKVDVP-RQ 140
T + I + L V + N++ ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI 268
Query: 141 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEP------P 194
L+ R + D + A T + + + L L Y + L P
Sbjct: 269 LLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 195 LV-------LQEFVNHGVLFKVYIVGEAIKVVRRFSL----PDVTKQ---DLSTSAGVFR 240
+++ + +K ++ + + + SL P ++ LS VF
Sbjct: 328 RRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFP 382
Query: 241 ---------FPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR-----RQLGLRLFN 286
+ +D + V +L L+E+ KE L L++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 287 LD-------IIREHGTRDQFYVIDI------NYF---PGY--------GKMPEYEHIFTD 322
+ I+ + F D+ YF G+ +M + +F D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 323 F 323
F
Sbjct: 500 F 500
Score = 37.9 bits (87), Expect = 0.005
Identities = 50/362 (13%), Positives = 104/362 (28%), Gaps = 107/362 (29%)
Query: 12 TREEELLSF--PQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPL 69
TR +++ F T L LT + KS L L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------CRPQDLPRE 321
Query: 70 SDQG-PFDIVL-------HKLTGKEWRQI----LEEYRQTHPEVTVLDPPYAIQHLHNRQ 117
P + + T W+ + L ++ + VL+P + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAE-YRKM---- 374
Query: 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK----------AGLTLPLVAKP 167
+ +L + ++ IP ++L + + + K
Sbjct: 375 --------------F------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 168 LVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDV 227
+ + K +S+ Y K++ E+ H + Y + + F D+
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLE---NEYALHRSIVDHY------NIPKTFDSDDL 464
Query: 228 TKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE-R-LAKELRRQ------ 279
L F + + + + + L L+ R L +++R
Sbjct: 465 IPPYLD---QYF-YSHIGHHLKNIEHPERM----TLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 280 --------LGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHI-----FTDFL-L 325
L+ + I ++ V I F +P+ E +TD L +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYER-LVNAILDF-----LPKIEENLICSKYTDLLRI 570
Query: 326 SL 327
+L
Sbjct: 571 AL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 2e-06
Identities = 62/309 (20%), Positives = 96/309 (31%), Gaps = 109/309 (35%)
Query: 67 RPLS-DQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVT----VLDPPYAIQHLHNRQSM 119
RPL+ G + VL T + Q+ E++ + PE T D P L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F 64
Query: 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT------LPLVAKPLVADGS 173
L V+ ++E D VL LT L
Sbjct: 65 LGYVSS----------------LVEPSKVGQFDQVLNLCLTEFENCYL----------EG 98
Query: 174 AKSHELSLAYDQYSLKKLEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS 233
H +LA L + +++ L K YI A + +R P K+ S
Sbjct: 99 NDIH--ALA---AKLLQENDTTLVK----TKELIKNYI--TARIMAKR---P-FDKK--S 141
Query: 234 TSAGVFRFPRVSCAAASADDADL----------DPCVAEL-----PPRPLLERLAKELRR 278
SA +FR A +A L D EL L+ L K
Sbjct: 142 NSA-LFR-------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 279 QLGLRLFNLDIIREHGTRDQFY--VIDINYF---PGYGKMPEYEHIFTDFLLS------- 326
L ++IR ++ + ++I + P P+ D+LLS
Sbjct: 194 TL------SELIRTTLDAEKVFTQGLNILEWLENP--SNTPD-----KDYLLSIPISCPL 240
Query: 327 --LTQ-SRY 332
+ Q + Y
Sbjct: 241 IGVIQLAHY 249
Score = 40.8 bits (95), Expect = 5e-04
Identities = 47/326 (14%), Positives = 90/326 (27%), Gaps = 109/326 (33%)
Query: 21 PQTQQQSKLVVVGY----ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD 76
T ++K ++ Y + + L VAI QG D
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTD 167
Query: 77 IVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 136
+E R + + Y V L ++ + L +++ D + G ++
Sbjct: 168 DYF-----EELRDLYQTYH---VLVGDL-IKFSAETL---SELIRTTLDAEKVFTQG-LN 214
Query: 137 VPRQLVIERDASSIPDV--VLKAGLTLPL------------------------------- 163
+ L + S+ PD +L ++ PL
Sbjct: 215 ILEWL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 164 -VAKPLVA--------------DGSAK-----------SHELSLAYDQYSLKKLEPPLVL 197
++ LV K +E AY SL PP +L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSL----PPSIL 324
Query: 198 QEFVNHGVLFKVYIVGEAIK----VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 253
++ + + E + + + V T++ + +V + +
Sbjct: 325 EDSLEN---------NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 254 ADLDPCVAELPPRPLLERLAKELRRQ 279
V PP+ L L LR+
Sbjct: 376 N----LVVSGPPQS-LYGLNLTLRKA 396
Score = 33.5 bits (76), Expect = 0.11
Identities = 34/244 (13%), Positives = 77/244 (31%), Gaps = 88/244 (36%)
Query: 126 MNLSNSYGKVDVPRQLVIERDAS-------SIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178
M+L Y + + D SI D+V+ + L + G K
Sbjct: 1633 MDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKR 1683
Query: 179 L-----SLAYDQYSLKKLEPPLVLQEFVNH----------GVLFK-------VYIVGEAI 216
+ ++ ++ KL+ + +E H G+L + ++ +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 217 -KVVR-RFSLPDVTKQD-------------LSTSAGVFRF------------------PR 243
+ ++ + +P D L++ A V PR
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 244 VSCAAASADDADLDP-CVAELPPRPLLERLAKELRRQLGLRL----FNLDIIREHGTRDQ 298
++ ++P VA + L+ + + + ++ G + +N++ +Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--------NQ 1851
Query: 299 FYVI 302
YV
Sbjct: 1852 QYVA 1855
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 40.6 bits (95), Expect = 4e-04
Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 38/207 (18%)
Query: 101 VTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 159
VTV+ PY A + ++ +M + + R +S + + +
Sbjct: 99 VTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR---TYATMASFEEALAAGEV 148
Query: 160 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGVLFKVYIVGEAIKVV 219
LP+ KP S + + + L L++QE +VG+ + V
Sbjct: 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE----------LLVGQELGV- 197
Query: 220 RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 279
+ D+ +++ + + + + R + L + +
Sbjct: 198 --DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLDG 245
Query: 280 LGLR-LFNLDIIREHGTRDQFYVIDIN 305
GL + D+ G Y+ +IN
Sbjct: 246 SGLVGPLDFDLFDVAG---TLYLSEIN 269
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 40.5 bits (95), Expect = 4e-04
Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 63/278 (22%)
Query: 53 ARNKGILFVAIDQNR---PLSDQGP----FDIVLHKLTGKEWR----QILEEYRQTHPEV 101
A G+ + + L ++ + L + + + L +
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG-----I 74
Query: 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL 161
V++ P I+ ++ + +A + P+ + D ++ G
Sbjct: 75 PVVNRPEVIEACGDKWATSVALAKAG-------LPQPKTALAT-DREEALRLMEAFGY-- 124
Query: 162 PLVAKPL-------VADGSAKSHELSLAYDQYSLKKLE-PPLVLQEFV-NHGVLFKVYIV 212
P+V KP+ +A + L + +QE+V G +V++V
Sbjct: 125 PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 213 G-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 271
G AI + R + + +A + C P + R
Sbjct: 185 GERAIAAIYR-------------RSAHWI-------TNTARGGQAENC----PLTEEVAR 220
Query: 272 LAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 309
L+ + +G + +D+ + V ++N+
Sbjct: 221 LSVKAAEAVGGGVVAVDLFE---SERGLLVNEVNHTME 255
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 33.4 bits (76), Expect = 0.091
Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 64/257 (24%)
Query: 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----------LTLP 162
+ +R+ + + + +PR ++ RD ++ + L G P
Sbjct: 95 IQDRREVYSILQAEG-------ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKP 147
Query: 163 LVAKPLVAD--------------GSA----KSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
V KP+ A+ GS K S Y S + + +EF+
Sbjct: 148 FVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTD 207
Query: 205 VL-FKVYIVG-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAE 262
KVY VG + R S K + + R+P
Sbjct: 208 GTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYP------------------VI 249
Query: 263 LPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY----EH 318
L R + +A ++ + D++R +G Q YV D+N F +Y
Sbjct: 250 LNAR--EKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCAK 304
Query: 319 IFTDFLLSLTQSRYKKK 335
I + ++ ++
Sbjct: 305 ILGNIVMRELAPQFHIP 321
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.6 bits (70), Expect = 0.79
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
WR L +Q P + P YAI+ L
Sbjct: 353 GVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLD 387
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 38/66 (57%)
Query: 184 DQYSLKKLEPPLVLQEFVNHGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR 243
++ +LKKL+ L K+Y A D SA P
Sbjct: 18 EKQALKKLQASL------------KLY----A---------DD--------SA-----PA 39
Query: 244 VSCAAA 249
++ A
Sbjct: 40 LAIKAT 45
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 29.5 bits (67), Expect = 1.6
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAI 63
MK +++ +E+ L + S++ V + + K K+ + R+ G + +
Sbjct: 93 MKMGLKDTPTQEDWLV-SVLPEGSRVGVDPLIIPTDYWK-----KMAKVLRSAGHHLIPV 146
Query: 64 DQN--------RPLSDQGPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLD 105
+N RP P + TG W R + E VT LD
Sbjct: 147 KENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALD 203
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 28.4 bits (63), Expect = 2.2
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 230 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 289
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 63 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 108
Query: 290 IREHGTRDQFYV 301
+ ++
Sbjct: 109 AQSVNDIPGVWI 120
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.7 bits (65), Expect = 3.1
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
KEW ++ ++T + + P + ++
Sbjct: 369 KEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMN 403
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 27.6 bits (61), Expect = 3.1
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 230 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 289
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 47 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 92
Query: 290 IREHGTRDQFYV 301
+ ++
Sbjct: 93 AQSVNDIPGVWI 104
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 28.6 bits (64), Expect = 3.3
Identities = 4/35 (11%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 70 SDQGPFDIVL-HKLTGKEWRQILEEYRQTHPEVTV 103
+ G I + ++++ + + +P++T+
Sbjct: 25 AGGGKTKISFYSYFKDNQIGEVVKGFEKKNPDITL 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 4.1
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 85 KEWRQILEEYRQTHP-------EVTVLDPPYAIQHLH 114
EW + ++++ +P + + P I+ L
Sbjct: 435 SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLS 471
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 28.2 bits (63), Expect = 4.3
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 37/141 (26%)
Query: 78 VLHKLTGKE---WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGK 134
+ G E ++ Y+Q +P V V++ N +++L+ M
Sbjct: 5 IFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLK--TRML------- 55
Query: 135 VDVPRQLVIERDASSIPDVV-LKAGLTL--PLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
PD + AG+ L V + D LS + Q +
Sbjct: 56 ------------GGDPPDTFQVHAGMELIGTWVVANRMED-------LSALFRQEGWLQA 96
Query: 192 EPPLVLQEFVNHGVLFKVYIV 212
P ++ G ++ V
Sbjct: 97 FPKGLIDLISYKG---GIWSV 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,292,485
Number of extensions: 328270
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 36
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)