Query 019653
Match_columns 337
No_of_seqs 237 out of 1763
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 1.4E-61 3E-66 472.2 31.0 297 20-328 2-313 (408)
2 COG4536 CorB Putative Mg2+ and 100.0 6E-63 1.3E-67 456.1 18.8 307 12-328 2-326 (423)
3 PRK11573 hypothetical protein; 100.0 1.5E-61 3.3E-66 472.0 29.1 294 23-328 2-313 (413)
4 COG1253 TlyC Hemolysins and re 100.0 4.5E-57 9.7E-62 443.8 30.9 307 11-328 2-330 (429)
5 KOG2118 Predicted membrane pro 100.0 3E-32 6.5E-37 269.9 6.0 314 4-320 4-323 (498)
6 PF01595 DUF21: Domain of unkn 100.0 1.1E-28 2.3E-33 215.7 20.9 169 15-191 2-183 (183)
7 COG4535 CorC Putative Mg2+ and 100.0 7.3E-31 1.6E-35 229.3 6.0 171 149-328 19-191 (293)
8 PRK15094 magnesium/cobalt effl 100.0 4.3E-29 9.3E-34 233.6 12.2 167 153-328 23-191 (292)
9 COG3448 CBS-domain-containing 99.7 3.2E-15 6.9E-20 135.4 17.3 150 164-321 202-367 (382)
10 TIGR01302 IMP_dehydrog inosine 99.6 1.1E-15 2.3E-20 151.5 11.9 150 163-325 43-200 (450)
11 TIGR00400 mgtE Mg2+ transporte 99.6 8.4E-16 1.8E-20 152.4 10.5 150 164-323 89-249 (449)
12 COG4109 Predicted transcriptio 99.5 4.1E-15 8.8E-20 137.6 5.6 136 191-330 170-312 (432)
13 COG2524 Predicted transcriptio 99.5 9.4E-15 2E-19 130.1 4.7 128 195-327 163-292 (294)
14 PRK05567 inosine 5'-monophosph 99.5 1.8E-13 4E-18 136.9 11.5 148 163-324 50-203 (486)
15 cd04603 CBS_pair_KefB_assoc Th 99.4 1.1E-12 2.4E-17 104.6 9.2 107 215-323 2-110 (111)
16 cd04641 CBS_pair_28 The CBS do 99.4 1.3E-12 2.8E-17 105.4 8.7 107 215-323 2-119 (120)
17 cd04626 CBS_pair_13 The CBS do 99.4 1.3E-12 2.8E-17 103.7 7.7 106 215-323 2-110 (111)
18 cd04605 CBS_pair_MET2_assoc Th 99.4 1.3E-12 2.8E-17 103.4 7.5 106 215-322 3-108 (110)
19 cd04618 CBS_pair_5 The CBS dom 99.4 4E-12 8.6E-17 99.7 9.9 94 215-322 2-96 (98)
20 cd04600 CBS_pair_HPP_assoc Thi 99.4 2.6E-12 5.6E-17 103.9 8.6 106 215-322 3-122 (124)
21 cd04623 CBS_pair_10 The CBS do 99.3 2.7E-12 5.8E-17 101.7 7.5 105 215-322 2-111 (113)
22 cd04619 CBS_pair_6 The CBS dom 99.3 4.6E-12 9.9E-17 101.4 8.8 107 215-323 2-113 (114)
23 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.7E-12 5.8E-17 101.6 7.3 105 214-322 2-106 (108)
24 cd04630 CBS_pair_17 The CBS do 99.3 4.2E-12 9.1E-17 101.4 7.8 106 215-322 2-112 (114)
25 PRK10892 D-arabinose 5-phospha 99.3 2.4E-12 5.2E-17 122.6 7.3 119 202-323 200-322 (326)
26 cd04588 CBS_pair_CAP-ED_DUF294 99.3 5.3E-12 1.2E-16 99.8 8.2 107 215-324 2-110 (110)
27 PRK11543 gutQ D-arabinose 5-ph 99.3 1.9E-12 4.1E-17 123.0 6.3 119 203-323 196-317 (321)
28 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 4.8E-12 1E-16 100.4 7.2 106 215-322 2-112 (114)
29 cd04631 CBS_pair_18 The CBS do 99.3 4.3E-12 9.4E-17 102.7 7.0 108 215-323 2-124 (125)
30 cd04593 CBS_pair_EriC_assoc_ba 99.3 7.4E-12 1.6E-16 100.0 8.0 106 215-322 2-113 (115)
31 cd04642 CBS_pair_29 The CBS do 99.3 6.2E-12 1.3E-16 102.4 7.6 106 215-322 2-124 (126)
32 cd04803 CBS_pair_15 The CBS do 99.3 6E-12 1.3E-16 101.4 7.3 106 215-322 2-120 (122)
33 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1E-11 2.2E-16 98.1 8.3 106 215-323 2-110 (111)
34 cd04624 CBS_pair_11 The CBS do 99.3 8.5E-12 1.8E-16 99.0 7.8 107 215-323 2-111 (112)
35 cd04801 CBS_pair_M50_like This 99.3 1E-11 2.2E-16 99.1 8.3 107 215-323 2-113 (114)
36 cd04590 CBS_pair_CorC_HlyC_ass 99.3 9.6E-12 2.1E-16 98.5 7.8 106 215-322 2-109 (111)
37 cd04627 CBS_pair_14 The CBS do 99.3 8.3E-12 1.8E-16 101.2 7.5 106 215-321 2-120 (123)
38 cd04639 CBS_pair_26 The CBS do 99.3 7.9E-12 1.7E-16 99.0 7.1 106 215-322 2-109 (111)
39 cd04601 CBS_pair_IMPDH This cd 99.3 1.4E-11 3E-16 97.2 8.2 107 215-324 3-110 (110)
40 cd04636 CBS_pair_23 The CBS do 99.3 8.1E-12 1.8E-16 102.6 7.0 106 215-323 2-131 (132)
41 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.1E-11 2.5E-16 97.8 7.5 105 215-322 2-109 (111)
42 cd04643 CBS_pair_30 The CBS do 99.3 1.1E-11 2.4E-16 98.9 7.4 105 215-323 2-115 (116)
43 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 1.8E-11 3.9E-16 96.1 8.2 103 215-322 2-104 (106)
44 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 2.1E-11 4.5E-16 96.0 8.3 105 215-322 3-107 (109)
45 cd04610 CBS_pair_ParBc_assoc T 99.3 2.1E-11 4.6E-16 95.8 8.1 104 215-323 3-106 (107)
46 cd04635 CBS_pair_22 The CBS do 99.3 1.7E-11 3.6E-16 98.8 7.5 107 215-323 2-121 (122)
47 cd04621 CBS_pair_8 The CBS dom 99.2 1.7E-11 3.6E-16 101.7 7.2 105 215-322 2-133 (135)
48 PRK01862 putative voltage-gate 99.2 7.5E-12 1.6E-16 128.0 6.2 118 201-322 444-567 (574)
49 PRK07807 inosine 5-monophospha 99.2 1.2E-11 2.6E-16 123.0 7.1 116 202-323 87-202 (479)
50 cd04617 CBS_pair_4 The CBS dom 99.2 3.3E-11 7.1E-16 97.0 8.4 107 215-323 2-117 (118)
51 COG3620 Predicted transcriptio 99.2 5.1E-12 1.1E-16 105.1 3.6 137 183-327 39-185 (187)
52 cd04607 CBS_pair_NTP_transfera 99.2 3.2E-11 7E-16 96.0 8.2 105 216-322 4-111 (113)
53 cd04615 CBS_pair_2 The CBS dom 99.2 2.6E-11 5.7E-16 96.3 7.1 105 216-322 3-111 (113)
54 cd04585 CBS_pair_ACT_assoc2 Th 99.2 2.6E-11 5.6E-16 97.2 7.0 106 215-323 2-121 (122)
55 cd04638 CBS_pair_25 The CBS do 99.2 4.6E-11 9.9E-16 94.0 8.3 104 215-323 2-105 (106)
56 cd04614 CBS_pair_1 The CBS dom 99.2 4.7E-11 1E-15 93.0 8.1 93 215-322 2-94 (96)
57 cd04586 CBS_pair_BON_assoc Thi 99.2 2.5E-11 5.3E-16 100.1 6.7 105 215-322 3-133 (135)
58 cd04632 CBS_pair_19 The CBS do 99.2 4.8E-11 1E-15 97.2 8.1 106 215-322 2-126 (128)
59 cd04640 CBS_pair_27 The CBS do 99.2 3E-11 6.6E-16 98.4 6.6 106 216-323 3-125 (126)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.2 4E-11 8.7E-16 94.9 7.2 105 215-323 2-110 (111)
61 cd04595 CBS_pair_DHH_polyA_Pol 99.2 4.7E-11 1E-15 94.5 7.4 104 215-322 3-108 (110)
62 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 3.8E-11 8.1E-16 95.3 6.8 106 215-322 3-112 (114)
63 cd04599 CBS_pair_GGDEF_assoc2 99.2 6.4E-11 1.4E-15 92.7 7.8 102 215-322 2-103 (105)
64 cd04637 CBS_pair_24 The CBS do 99.2 2.3E-11 5E-16 98.1 5.4 105 215-322 2-120 (122)
65 TIGR00393 kpsF KpsF/GutQ famil 99.2 4.6E-11 1E-15 110.5 8.1 110 204-316 155-267 (268)
66 cd04606 CBS_pair_Mg_transporte 99.2 5E-11 1.1E-15 94.3 7.1 101 219-323 2-107 (109)
67 cd04629 CBS_pair_16 The CBS do 99.2 2.5E-11 5.5E-16 96.4 5.2 105 215-322 2-112 (114)
68 cd04589 CBS_pair_CAP-ED_DUF294 99.2 6.6E-11 1.4E-15 93.8 7.6 104 215-322 2-109 (111)
69 cd04620 CBS_pair_7 The CBS dom 99.2 6.3E-11 1.4E-15 94.5 7.3 105 215-322 2-113 (115)
70 cd04602 CBS_pair_IMPDH_2 This 99.2 5.3E-11 1.1E-15 95.1 6.8 107 215-323 3-113 (114)
71 cd04591 CBS_pair_EriC_assoc_eu 99.2 5.9E-11 1.3E-15 94.0 6.9 100 214-322 2-103 (105)
72 cd04594 CBS_pair_EriC_assoc_ar 99.2 1E-10 2.2E-15 91.9 7.9 98 218-322 5-102 (104)
73 cd04587 CBS_pair_CAP-ED_DUF294 99.2 6.8E-11 1.5E-15 93.8 6.9 105 215-322 2-111 (113)
74 PTZ00314 inosine-5'-monophosph 99.2 1.2E-10 2.6E-15 116.5 10.0 126 190-324 87-216 (495)
75 cd02205 CBS_pair The CBS domai 99.2 1E-10 2.3E-15 91.4 7.3 106 215-322 2-111 (113)
76 cd04584 CBS_pair_ACT_assoc Thi 99.1 7.8E-11 1.7E-15 94.6 6.4 105 215-322 2-119 (121)
77 cd04622 CBS_pair_9 The CBS dom 99.1 1.8E-10 4E-15 91.3 8.5 105 215-322 2-111 (113)
78 cd04608 CBS_pair_PALP_assoc Th 99.1 5.8E-11 1.3E-15 97.0 5.7 107 215-323 3-122 (124)
79 PRK07107 inosine 5-monophospha 99.1 6.8E-11 1.5E-15 118.2 6.9 108 217-325 108-219 (502)
80 cd04802 CBS_pair_3 The CBS dom 99.1 2E-10 4.4E-15 91.0 8.2 104 215-322 2-110 (112)
81 PLN02274 inosine-5'-monophosph 99.1 1.5E-10 3.3E-15 115.9 8.7 125 189-322 90-218 (505)
82 cd04633 CBS_pair_20 The CBS do 99.1 1.3E-10 2.8E-15 93.5 6.7 105 215-323 2-120 (121)
83 TIGR01137 cysta_beta cystathio 99.1 8.4E-11 1.8E-15 116.9 6.2 120 195-323 328-451 (454)
84 cd04609 CBS_pair_PALP_assoc2 T 99.1 1.9E-10 4.1E-15 90.5 6.7 103 215-322 2-108 (110)
85 cd04634 CBS_pair_21 The CBS do 99.1 2.7E-10 5.8E-15 95.2 6.5 104 215-322 2-141 (143)
86 COG2239 MgtE Mg/Co/Ni transpor 99.1 4.4E-10 9.5E-15 110.4 8.6 130 186-321 114-248 (451)
87 cd04625 CBS_pair_12 The CBS do 99.1 3.9E-10 8.4E-15 89.3 6.8 105 215-323 2-111 (112)
88 TIGR01303 IMP_DH_rel_1 IMP deh 99.0 2.9E-10 6.2E-15 113.0 6.9 115 202-323 86-200 (475)
89 cd04592 CBS_pair_EriC_assoc_eu 99.0 8.3E-10 1.8E-14 91.6 8.3 96 215-312 2-121 (133)
90 cd04598 CBS_pair_GGDEF_assoc T 99.0 3.7E-10 8.1E-15 90.4 6.1 105 215-322 2-117 (119)
91 COG0517 FOG: CBS domain [Gener 98.9 4.3E-09 9.3E-14 83.7 8.4 109 208-321 3-116 (117)
92 PF00571 CBS: CBS domain CBS d 98.8 1.3E-08 2.8E-13 71.2 5.0 54 206-263 1-54 (57)
93 PRK14869 putative manganese-de 98.7 3E-08 6.4E-13 101.1 8.1 117 203-323 67-301 (546)
94 COG2905 Predicted signal-trans 98.7 2.4E-08 5.2E-13 98.4 5.2 130 197-331 142-275 (610)
95 KOG0474 Cl- channel CLC-7 and 98.3 3.5E-07 7.7E-12 91.0 3.5 129 200-331 578-753 (762)
96 PRK10070 glycine betaine trans 98.2 2.9E-06 6.2E-11 83.1 7.0 116 204-323 274-390 (400)
97 KOG2550 IMP dehydrogenase/GMP 98.1 3.4E-06 7.3E-11 80.4 5.7 149 163-321 71-223 (503)
98 KOG1764 5'-AMP-activated prote 98.1 4.8E-06 1E-10 80.9 5.8 107 215-323 238-356 (381)
99 cd04603 CBS_pair_KefB_assoc Th 98.0 9.2E-06 2E-10 64.3 5.5 56 203-262 55-110 (111)
100 PF00571 CBS: CBS domain CBS d 98.0 1.3E-06 2.7E-11 61.0 -0.1 51 272-322 2-52 (57)
101 TIGR01186 proV glycine betaine 98.0 1.6E-05 3.5E-10 76.9 7.3 103 218-324 254-356 (363)
102 PRK05567 inosine 5'-monophosph 98.0 1.5E-05 3.4E-10 80.0 7.2 125 203-333 146-274 (486)
103 TIGR00400 mgtE Mg2+ transporte 97.9 4.1E-06 8.8E-11 83.4 2.6 98 202-305 193-290 (449)
104 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.1E-05 4.5E-10 63.0 6.1 55 204-262 58-112 (113)
105 cd04801 CBS_pair_M50_like This 97.9 1.7E-05 3.7E-10 62.8 5.2 58 203-262 56-113 (114)
106 cd04604 CBS_pair_KpsF_GutQ_ass 97.9 2.6E-05 5.6E-10 61.4 6.1 59 200-262 55-113 (114)
107 PRK07107 inosine 5-monophospha 97.9 4.6E-05 9.9E-10 76.7 8.7 100 201-305 158-260 (502)
108 PTZ00314 inosine-5'-monophosph 97.9 2.9E-05 6.4E-10 78.0 7.3 128 202-333 157-287 (495)
109 cd04619 CBS_pair_6 The CBS dom 97.9 2.3E-05 5E-10 62.2 5.3 57 202-262 57-113 (114)
110 cd04617 CBS_pair_4 The CBS dom 97.9 2.5E-05 5.3E-10 62.5 5.4 61 201-262 55-117 (118)
111 PLN02274 inosine-5'-monophosph 97.8 2.9E-05 6.2E-10 78.2 6.4 127 202-333 161-294 (505)
112 PRK07807 inosine 5-monophospha 97.8 2.7E-05 5.9E-10 77.8 5.8 123 204-333 148-273 (479)
113 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 3.8E-05 8.2E-10 76.7 6.7 123 204-333 146-271 (475)
114 PRK14869 putative manganese-de 97.7 2.2E-05 4.8E-10 80.1 3.8 120 202-325 244-392 (546)
115 cd04607 CBS_pair_NTP_transfera 97.7 6.6E-05 1.4E-09 59.2 5.4 56 203-262 57-112 (113)
116 cd04585 CBS_pair_ACT_assoc2 Th 97.7 6.3E-05 1.4E-09 59.7 5.2 58 201-262 64-121 (122)
117 cd04640 CBS_pair_27 The CBS do 97.7 4.8E-05 1.1E-09 61.5 4.2 60 202-262 62-125 (126)
118 cd04620 CBS_pair_7 The CBS dom 97.6 0.00013 2.7E-09 57.7 6.0 56 203-262 57-114 (115)
119 cd04618 CBS_pair_5 The CBS dom 97.6 0.00011 2.3E-09 57.2 5.5 46 216-262 52-97 (98)
120 cd04582 CBS_pair_ABC_OpuCA_ass 97.6 0.00016 3.5E-09 56.1 6.2 54 205-262 52-105 (106)
121 cd04610 CBS_pair_ParBc_assoc T 97.6 0.00012 2.6E-09 56.9 5.3 56 203-262 51-106 (107)
122 cd04627 CBS_pair_14 The CBS do 97.6 0.00015 3.4E-09 58.2 5.8 52 206-261 70-121 (123)
123 cd04596 CBS_pair_DRTGG_assoc T 97.6 0.00013 2.9E-09 57.0 5.3 57 202-262 51-107 (108)
124 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.00013 2.9E-09 58.3 5.3 58 201-262 66-123 (124)
125 cd04622 CBS_pair_9 The CBS dom 97.6 0.00015 3.4E-09 56.8 5.6 56 203-262 57-112 (113)
126 cd04623 CBS_pair_10 The CBS do 97.6 0.00014 3.1E-09 56.9 5.3 55 203-262 58-112 (113)
127 TIGR03520 GldE gliding motilit 97.5 0.031 6.7E-07 55.1 22.7 108 203-315 254-368 (408)
128 cd04615 CBS_pair_2 The CBS dom 97.5 0.00016 3.5E-09 56.8 5.4 57 202-262 56-112 (113)
129 cd04587 CBS_pair_CAP-ED_DUF294 97.5 0.00014 3.1E-09 57.1 5.1 55 204-262 58-112 (113)
130 cd04613 CBS_pair_SpoIVFB_EriC_ 97.5 0.00018 3.9E-09 56.4 5.4 57 203-262 57-113 (114)
131 cd04625 CBS_pair_12 The CBS do 97.5 0.00016 3.5E-09 56.7 5.1 55 203-262 57-111 (112)
132 PRK10892 D-arabinose 5-phospha 97.5 0.00015 3.2E-09 69.1 5.5 58 201-263 266-323 (326)
133 cd04631 CBS_pair_18 The CBS do 97.5 0.00019 4.2E-09 57.5 5.1 57 202-262 68-124 (125)
134 cd04601 CBS_pair_IMPDH This cd 97.5 0.00024 5.3E-09 55.3 5.6 56 203-262 53-109 (110)
135 cd04636 CBS_pair_23 The CBS do 97.5 0.0002 4.3E-09 58.3 5.2 56 202-262 76-131 (132)
136 cd04621 CBS_pair_8 The CBS dom 97.5 0.00022 4.8E-09 58.8 5.5 56 202-262 79-134 (135)
137 cd04593 CBS_pair_EriC_assoc_ba 97.5 0.00027 6E-09 55.8 5.8 56 204-262 58-114 (115)
138 cd04602 CBS_pair_IMPDH_2 This 97.5 0.00021 4.7E-09 56.5 5.1 58 203-262 56-113 (114)
139 cd04612 CBS_pair_SpoIVFB_EriC_ 97.5 0.0003 6.4E-09 54.9 5.9 55 204-262 56-110 (111)
140 PRK11543 gutQ D-arabinose 5-ph 97.5 0.00025 5.5E-09 67.3 6.5 57 203-263 262-318 (321)
141 cd04606 CBS_pair_Mg_transporte 97.4 0.00026 5.6E-09 55.5 5.4 57 203-263 52-108 (109)
142 cd04630 CBS_pair_17 The CBS do 97.4 0.00024 5.2E-09 56.2 5.3 56 202-262 58-113 (114)
143 cd04595 CBS_pair_DHH_polyA_Pol 97.4 0.00028 6.1E-09 55.2 5.6 56 202-262 54-109 (110)
144 cd04803 CBS_pair_15 The CBS do 97.4 0.00026 5.6E-09 56.4 5.5 57 202-262 65-121 (122)
145 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00027 5.8E-09 55.0 5.5 55 204-262 54-108 (109)
146 COG0517 FOG: CBS domain [Gener 97.4 0.00043 9.2E-09 54.6 6.7 53 205-261 63-117 (117)
147 cd04626 CBS_pair_13 The CBS do 97.4 0.00027 5.9E-09 55.4 5.5 55 203-262 56-110 (111)
148 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00029 6.2E-09 55.0 5.6 57 202-262 54-110 (111)
149 cd04641 CBS_pair_28 The CBS do 97.4 0.00034 7.3E-09 55.9 5.9 52 207-262 68-119 (120)
150 COG2524 Predicted transcriptio 97.4 0.00018 4E-09 65.0 4.7 58 203-264 233-290 (294)
151 cd04802 CBS_pair_3 The CBS dom 97.4 0.00029 6.3E-09 55.2 5.5 56 202-262 56-111 (112)
152 cd04639 CBS_pair_26 The CBS do 97.4 0.00027 5.8E-09 55.3 5.0 55 204-262 56-110 (111)
153 cd04633 CBS_pair_20 The CBS do 97.4 0.00021 4.5E-09 56.9 4.4 57 201-262 64-120 (121)
154 cd04589 CBS_pair_CAP-ED_DUF294 97.4 0.00031 6.8E-09 55.0 5.2 56 202-262 55-110 (111)
155 smart00116 CBS Domain in cysta 97.4 0.00038 8.2E-09 45.2 4.8 46 216-263 2-47 (49)
156 cd04635 CBS_pair_22 The CBS do 97.4 0.0003 6.5E-09 56.1 5.2 57 202-262 65-121 (122)
157 cd04586 CBS_pair_BON_assoc Thi 97.4 0.00023 5E-09 58.2 4.4 57 201-262 78-134 (135)
158 cd04584 CBS_pair_ACT_assoc Thi 97.3 0.00033 7E-09 55.7 5.0 57 201-262 64-120 (121)
159 cd04599 CBS_pair_GGDEF_assoc2 97.3 0.00036 7.9E-09 53.9 5.0 54 203-261 50-103 (105)
160 cd04643 CBS_pair_30 The CBS do 97.3 0.0003 6.6E-09 55.4 4.4 55 202-262 61-115 (116)
161 cd04594 CBS_pair_EriC_assoc_ar 97.3 0.00051 1.1E-08 53.4 5.6 54 204-262 50-103 (104)
162 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.00042 9.1E-09 54.2 4.9 55 203-262 56-110 (111)
163 cd04637 CBS_pair_24 The CBS do 97.3 0.00041 8.8E-09 55.4 4.9 55 204-262 67-121 (122)
164 TIGR01302 IMP_dehydrog inosine 97.3 0.00044 9.6E-09 68.9 5.9 127 202-333 141-270 (450)
165 cd04614 CBS_pair_1 The CBS dom 97.3 0.00061 1.3E-08 52.6 5.5 45 216-262 51-95 (96)
166 cd04642 CBS_pair_29 The CBS do 97.3 0.00064 1.4E-08 54.8 5.8 51 208-262 75-125 (126)
167 cd04605 CBS_pair_MET2_assoc Th 97.2 0.00091 2E-08 52.2 6.5 54 205-262 56-109 (110)
168 cd04629 CBS_pair_16 The CBS do 97.2 0.00041 8.9E-09 54.5 4.5 55 203-262 59-113 (114)
169 cd04624 CBS_pair_11 The CBS do 97.2 0.00085 1.8E-08 52.5 6.3 56 203-262 56-111 (112)
170 cd04588 CBS_pair_CAP-ED_DUF294 97.2 0.00074 1.6E-08 52.7 5.4 55 204-262 55-109 (110)
171 KOG1764 5'-AMP-activated prote 97.2 0.00091 2E-08 65.1 6.7 113 211-324 159-284 (381)
172 PRK01862 putative voltage-gate 97.1 0.0009 2E-08 68.8 6.5 59 203-264 511-570 (574)
173 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.00082 1.8E-08 52.5 4.8 54 204-262 57-110 (111)
174 cd04632 CBS_pair_19 The CBS do 97.1 0.00089 1.9E-08 54.0 4.9 58 202-262 69-127 (128)
175 COG3448 CBS-domain-containing 97.1 0.0012 2.5E-08 61.0 5.9 60 200-263 311-370 (382)
176 cd04608 CBS_pair_PALP_assoc Th 97.0 0.00034 7.4E-09 56.7 1.6 58 202-263 57-123 (124)
177 cd04634 CBS_pair_21 The CBS do 97.0 0.0012 2.6E-08 54.7 5.0 56 202-262 87-142 (143)
178 cd04591 CBS_pair_EriC_assoc_eu 97.0 0.0015 3.3E-08 51.1 5.2 49 209-262 56-104 (105)
179 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0011 2.4E-08 61.1 5.0 51 202-256 218-268 (268)
180 PRK15094 magnesium/cobalt effl 96.9 0.0024 5.1E-08 60.1 6.8 87 205-297 134-229 (292)
181 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.0014 3.1E-08 51.8 4.6 57 202-262 59-118 (119)
182 COG2905 Predicted signal-trans 96.7 0.0031 6.8E-08 62.9 6.3 70 191-265 198-270 (610)
183 cd04597 CBS_pair_DRTGG_assoc2 96.7 0.00093 2E-08 53.3 1.9 53 269-321 58-110 (113)
184 cd04638 CBS_pair_25 The CBS do 96.6 0.0034 7.5E-08 48.6 5.0 54 204-262 52-105 (106)
185 cd02205 CBS_pair The CBS domai 96.6 0.0063 1.4E-07 46.7 6.2 53 206-262 60-112 (113)
186 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.003 6.4E-08 49.0 4.3 54 203-262 56-109 (110)
187 KOG0475 Cl- channel CLC-3 and 96.4 0.0065 1.4E-07 61.3 6.6 115 206-322 545-691 (696)
188 COG4175 ProV ABC-type proline/ 96.2 0.0055 1.2E-07 57.6 4.1 117 191-321 261-378 (386)
189 smart00116 CBS Domain in cysta 96.1 0.0016 3.6E-08 42.0 0.4 44 278-321 1-44 (49)
190 TIGR03415 ABC_choXWV_ATP choli 96.1 0.0052 1.1E-07 59.9 3.7 108 200-324 270-378 (382)
191 COG2239 MgtE Mg/Co/Ni transpor 95.8 0.01 2.2E-07 58.9 4.2 60 200-263 192-251 (451)
192 COG3620 Predicted transcriptio 95.3 0.011 2.3E-07 50.1 2.0 50 269-319 65-114 (187)
193 COG4109 Predicted transcriptio 94.9 0.039 8.6E-07 52.3 4.9 60 200-263 245-304 (432)
194 KOG2550 IMP dehydrogenase/GMP 94.9 0.097 2.1E-06 50.6 7.5 103 200-309 167-272 (503)
195 cd04592 CBS_pair_EriC_assoc_eu 94.8 0.019 4.1E-07 47.3 2.2 44 278-321 2-45 (133)
196 TIGR01186 proV glycine betaine 94.6 0.054 1.2E-06 52.5 5.2 56 204-264 302-357 (363)
197 PRK11573 hypothetical protein; 94.0 0.18 4E-06 49.7 7.7 79 215-296 263-350 (413)
198 TIGR01137 cysta_beta cystathio 94.0 0.031 6.8E-07 55.6 2.2 55 268-322 334-388 (454)
199 PRK10070 glycine betaine trans 92.4 0.21 4.5E-06 49.1 5.2 57 203-264 336-392 (400)
200 COG1253 TlyC Hemolysins and re 88.9 2.4 5.2E-05 42.1 9.1 81 215-298 280-369 (429)
201 COG4536 CorB Putative Mg2+ and 84.7 4.7 0.0001 39.0 8.1 93 204-298 265-364 (423)
202 COG4535 CorC Putative Mg2+ and 77.7 8.2 0.00018 35.1 6.6 88 205-298 134-230 (293)
203 KOG0476 Cl- channel CLC-2 and 75.4 2.5 5.4E-05 44.2 3.1 60 201-263 585-645 (931)
204 TIGR03415 ABC_choXWV_ATP choli 72.2 4.7 0.0001 39.5 4.1 54 204-264 326-379 (382)
205 COG1125 OpuBA ABC-type proline 68.3 14 0.00031 34.2 6.0 97 215-321 188-305 (309)
206 KOG0474 Cl- channel CLC-7 and 67.3 7.4 0.00016 40.1 4.3 52 207-262 693-744 (762)
207 COG1125 OpuBA ABC-type proline 61.8 11 0.00025 34.9 4.1 60 201-262 246-307 (309)
208 PF02743 Cache_1: Cache domain 59.6 12 0.00025 27.4 3.2 57 240-321 18-74 (81)
209 COG4175 ProV ABC-type proline/ 59.5 12 0.00025 35.9 3.8 47 215-264 336-382 (386)
210 COG2216 KdpB High-affinity K+ 58.3 11 0.00024 38.2 3.6 33 228-262 417-449 (681)
211 PF14044 NETI: NETI protein 58.0 11 0.00025 26.1 2.6 30 217-247 2-36 (57)
212 PF03563 Bunya_G2: Bunyavirus 47.5 65 0.0014 29.7 6.5 38 106-157 197-234 (285)
213 KOG0475 Cl- channel CLC-3 and 41.5 42 0.0009 34.8 4.7 53 206-263 641-693 (696)
214 PF11131 PhrC_PhrF: Rap-phr ex 38.3 28 0.00062 21.8 1.9 17 19-35 6-22 (37)
215 PF01595 DUF21: Domain of unkn 35.8 2.6E+02 0.0057 23.4 15.6 7 27-33 22-28 (183)
216 PF02419 PsbL: PsbL protein; 35.6 62 0.0014 20.3 3.1 18 12-29 18-35 (37)
217 CHL00038 psbL photosystem II p 34.5 59 0.0013 20.5 2.9 18 12-29 19-36 (38)
218 PF15284 PAGK: Phage-encoded v 33.4 55 0.0012 23.1 2.9 23 16-38 7-29 (61)
219 PF07172 GRP: Glycine rich pro 31.9 61 0.0013 25.1 3.3 13 21-33 15-27 (95)
220 PRK00753 psbL photosystem II r 28.4 74 0.0016 20.1 2.6 18 12-29 20-37 (39)
221 COG3763 Uncharacterized protei 26.2 2.6E+02 0.0057 20.4 5.8 37 11-52 2-38 (71)
222 PF14827 Cache_3: Sensory doma 23.9 73 0.0016 25.1 2.6 18 240-258 93-110 (116)
223 cd00565 ThiS ThiaminS ubiquiti 23.3 99 0.0021 21.6 3.0 29 279-307 8-36 (65)
224 COG0523 Putative GTPases (G3E 23.2 61 0.0013 31.0 2.4 46 287-335 17-66 (323)
225 PHA00728 hypothetical protein 22.1 57 0.0012 26.4 1.6 55 188-247 35-89 (151)
226 PRK10329 glutaredoxin-like pro 21.5 1.3E+02 0.0027 22.2 3.3 41 218-261 30-70 (81)
227 PRK03972 ribosomal biogenesis 20.9 1.3E+02 0.0029 26.8 3.9 36 221-257 34-69 (208)
228 PRK08053 sulfur carrier protei 20.9 1.2E+02 0.0025 21.4 2.9 29 279-307 9-37 (66)
229 PF01994 Trm56: tRNA ribose 2' 20.8 54 0.0012 26.5 1.2 46 285-331 34-79 (120)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1.4e-61 Score=472.15 Aligned_cols=297 Identities=26% Similarity=0.454 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 019653 20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV 95 (337)
Q Consensus 20 ~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~----~~~ 95 (337)
++|+++||||||+|+|++|+++.|+++++++|+++ |+++++++++|+++++|+++|||++|.+.+.+.. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~----a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKK----EQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999864 7788999999999999999999999876544322 222
Q ss_pred H--------HHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 019653 96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL 164 (337)
Q Consensus 96 ~--------~~~a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l---~~~~~~~~ 164 (337)
+ ...+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+ +|.++ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 2 112345567789999999999999999999999999999999999999999999987765 45543 35
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEE
Q 019653 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244 (337)
Q Consensus 165 ~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~ 244 (337)
+|+|||+.+++. ++++| ++++|++|++|+++|++++|+|+||||+++++++.+++++ ++.+.+.+++|||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 34446 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred cCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 245 YEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 245 ~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
+++.|+++|+||.||++....+++.+++++ ++++.+||+++++.++++.|++++.|+|+|+||||++.|++|..|-++-
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDilee 309 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHH
Confidence 988899999999999987544333457777 6899999999999999999999999999999999999999999998888
Q ss_pred cCCC
Q 019653 325 AYGR 328 (337)
Q Consensus 325 ~~~~ 328 (337)
.+|.
T Consensus 310 ivge 313 (408)
T TIGR03520 310 IVGD 313 (408)
T ss_pred HhCC
Confidence 8875
No 2
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-63 Score=456.05 Aligned_cols=307 Identities=26% Similarity=0.404 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHH
Q 019653 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (337)
Q Consensus 12 ~~~~~~~i~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~ 91 (337)
.|..++++++|+.+||||||+|||++++||.|++.++++|+++ |+++.+++++|+++++++++|||++|++.+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 4888889999999999999999999999999999999999975 889999999999999999999999997543222
Q ss_pred ----hHHHH---HHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC
Q 019653 92 ----DGLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR 161 (337)
Q Consensus 92 ----~~~~~---~~~a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~---l~~~~~ 161 (337)
-.++| ...|+.+.|+++++|+|++||++|..|||+++..+++++..+.++|+|++|+++++++. ++|.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 12232 33577788999999999999999999999999999999999999999999999998875 466542
Q ss_pred ----cccccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcC
Q 019653 162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (337)
Q Consensus 162 ----~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~ 237 (337)
+...++|||+.+++. ++++|...+++++|+.+++++++++|+|||+||.++..++.|++.+ ++.+++.+++
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 456899999999984 5555778888999999999999999999999999999999999998 9999999999
Q ss_pred CcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC-C---CccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCC
Q 019653 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-V---PVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNA 313 (337)
Q Consensus 238 ~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-~---~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~ 313 (337)
|+|+|||.++.|+++|++|.||++++..+.+ . ++..+ ..+++|||+++++.+.|..|++++.|+++||||||++.
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~ 311 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ 311 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence 9999999999999999999999999765433 2 22232 58999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCC
Q 019653 314 EQPASNPASKSAYGR 328 (337)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (337)
|++|+-|-++-++|+
T Consensus 312 GLVTLEDIlEEIVGd 326 (423)
T COG4536 312 GLVTLEDILEEIVGD 326 (423)
T ss_pred eeeeHHHHHHHHhcc
Confidence 999999999988885
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-61 Score=471.96 Aligned_cols=294 Identities=21% Similarity=0.346 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHHH--
Q 019653 23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLVS-- 96 (337)
Q Consensus 23 l~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~----~~~~-- 96 (337)
+++||||||+|+|++|+++.|+++++++|+++ |+++++++++|+++++|+++|||++|.+.+.+.. .+++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56899999999999999999999999999864 7788999999999999999999999876544322 2222
Q ss_pred -HHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC----cccccHH
Q 019653 97 -AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR----VALFRRA 168 (337)
Q Consensus 97 -~~~a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l---~~~~~----~~~~s~e 168 (337)
.+.+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+ +|.++ ...+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 234556678899999999999999999999999999999999999999999999887754 56443 2468999
Q ss_pred HHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCC
Q 019653 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP 248 (337)
Q Consensus 169 EL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~ 248 (337)
||+.+++. +. +.++++|++|++|+++|++++|+||||||+++++++.+++++ ++++.+.++||||+|||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999984 32 259999999999999999999999999999999999999998 999999999999999999988
Q ss_pred CcEeEEeEhhhhhhcCCC-CC---CCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 249 TNIIGLILVKNLLTIHPE-DE---VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 249 ~~ivGiv~~kDll~~~~~-~~---~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
|+++|++|.||++....+ ++ .++.++ +||+.+||+++++.++|+.||+++.|+|+|+||||++.|++|..|-++.
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 999999999999864322 11 123355 6899999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 019653 325 AYGR 328 (337)
Q Consensus 325 ~~~~ 328 (337)
.+|+
T Consensus 310 ivGe 313 (413)
T PRK11573 310 IVGD 313 (413)
T ss_pred HhCC
Confidence 8886
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=4.5e-57 Score=443.80 Aligned_cols=307 Identities=28% Similarity=0.483 Sum_probs=265.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHH
Q 019653 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIF 90 (337)
Q Consensus 11 ~~~~~~~~i~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~ 90 (337)
..+..++++++|+++|||||++|+|+++++|.|+++++++|+++ |..++++.++++++++++++|+|+++...+..
T Consensus 2 ~~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~ 77 (429)
T COG1253 2 SLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAV 77 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999998864 77889999999999999999999988755443
Q ss_pred HhHHH----HHHH---------HHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019653 91 LDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (337)
Q Consensus 91 ~~~~~----~~~~---------a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l~ 157 (337)
....+ ..+. .++++|+++++|||++||++|++||++++++.++++++++++++|++|+++++++.++
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il 157 (429)
T COG1253 78 GEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAIL 157 (429)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1111 1456678999999999999999999999999999999999999999999999988764
Q ss_pred ---cCC----CcccccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHH
Q 019653 158 ---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELM 230 (337)
Q Consensus 158 ---~~~----~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~ 230 (337)
|.+ .....+.++++ +++ ++.+.|.++++|++|++|+|+|++++|+++||||+++++++.+.+.+ ++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~ 231 (429)
T COG1253 158 RLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELI 231 (429)
T ss_pred HHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHH
Confidence 433 22346677777 776 56778999999999999999999999999999999999999999998 999
Q ss_pred HHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC--CCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEec
Q 019653 231 NLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 308 (337)
Q Consensus 231 ~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe 308 (337)
+.+.+++|||+|||+++.|+++|++|.||++.....++ ...... .+|+++||+++++.++|++||+++.|+|+|+||
T Consensus 232 ~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE 310 (429)
T COG1253 232 ELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE 310 (429)
T ss_pred HHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc
Confidence 99999999999999988899999999999998654432 223323 569999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccCCC
Q 019653 309 YNKNAEQPASNPASKSAYGR 328 (337)
Q Consensus 309 ~G~~~~~~~~~~~~~~~~~~ 328 (337)
||++.|++|..|.++-.+|.
T Consensus 311 yG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 311 YGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred CCCeEEEeEHHHHHHHHhCC
Confidence 99999999999999988884
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.97 E-value=3e-32 Score=269.85 Aligned_cols=314 Identities=52% Similarity=0.815 Sum_probs=279.7
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-HHHHHHHHHHchhHHHHHHHHHHHH
Q 019653 4 EYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNAA 82 (337)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~-~a~~~l~l~~~~~~~l~tilign~~ 82 (337)
...||+..++...-++++++++++++||.+.++++.+-..++.+.+.|+.++++ .+++++...++.+.+++|.+++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~ 83 (498)
T KOG2118|consen 4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI 83 (498)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence 457899998888888888999999999999999999999999999999988775 5777888888899999999999999
Q ss_pred HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019653 83 AMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161 (337)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~~~~ 161 (337)
++.+ +..+.+...+.|.++.+++..+++|||++|++++.+|...+...+.|+.+++.++++|+.|+++++ ++.+|..-
T Consensus 84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~ 162 (498)
T KOG2118|consen 84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL 162 (498)
T ss_pred ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence 9988 777777777778898999999999999999999999999999999999999999999999999998 77788776
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEE
Q 019653 162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 241 (337)
Q Consensus 162 ~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~ 241 (337)
.....+.+++.++..+++|+++ |.+..+|..++.+++++.++.++|+|||..+++.++.+..+.++......++||||+
T Consensus 163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri 241 (498)
T KOG2118|consen 163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI 241 (498)
T ss_pred ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence 6677889999999998888777 999999999999999999999999999999999999999998777888889999999
Q ss_pred EEEcCCCCcEeEEeEhhhhhhcC----CCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCC
Q 019653 242 PVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPA 317 (337)
Q Consensus 242 PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~ 317 (337)
|||+++..+.+|.+..+.++... ..+..++.+.+.++.+.+|++++..+.++.|++.+.|++.|.. +....+..+
T Consensus 242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~ 320 (498)
T KOG2118|consen 242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLT 320 (498)
T ss_pred eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEe
Confidence 99998778888887777777655 3345677777889999999999999999999999999998876 566666666
Q ss_pred CCC
Q 019653 318 SNP 320 (337)
Q Consensus 318 ~~~ 320 (337)
..|
T Consensus 321 l~~ 323 (498)
T KOG2118|consen 321 LED 323 (498)
T ss_pred ccc
Confidence 665
No 6
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.97 E-value=1.1e-28 Score=215.72 Aligned_cols=169 Identities=28% Similarity=0.468 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHhH-
Q 019653 15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDG- 93 (337)
Q Consensus 15 ~~~~i~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~l~l~~~~~~~l~tilign~~~~~~~~~~~~~- 93 (337)
.++++++++++|||||++|+|++++|+.+++.++++|+++ ++++.++++||+++++|+++||++++...+.+...
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~----a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKR----ARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999999998854 77889999999999999999999998766543322
Q ss_pred ---HH----HHHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC--
Q 019653 94 ---LV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGR-- 161 (337)
Q Consensus 94 ---~~----~~~~a~~i~~~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l~---~~~~-- 161 (337)
.+ +.+.++++.++++++|||++||++|.+||++++.+.++++++++++++|++++++++.+++. |.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 22 23345566678899999999999999999999999999999999999999999999887654 4432
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCHHH
Q 019653 162 VALFRRAELKTLVNLHGNEAGKGGELTHDE 191 (337)
Q Consensus 162 ~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E 191 (337)
+..+|+|||+.+++ +++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 45799999999999 566779999876
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.3e-31 Score=229.35 Aligned_cols=171 Identities=25% Similarity=0.452 Sum_probs=155.8
Q ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHH
Q 019653 149 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKE 228 (337)
Q Consensus 149 l~~~~~~l~~~~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~ 228 (337)
+..+++.+|..++ -+++||..+++ ++++.+.++++-++|++++++..+++|+|||+||+++++++.+++++ +
T Consensus 19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 5666666775544 36899999998 56777999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--CCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEE
Q 019653 229 LMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVV 306 (337)
Q Consensus 229 ~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVv 306 (337)
.+..+.++.||||||+.++.|++.|+++.|||++.... ....++++ .||+.+|||+..+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 99999999999999999999999999999999986533 23567887 8999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCccccCCC
Q 019653 307 RQYNKNAEQPASNPASKSAYGR 328 (337)
Q Consensus 307 De~G~~~~~~~~~~~~~~~~~~ 328 (337)
|||||+.|++|.-|.++.++|+
T Consensus 170 DEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 170 DEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred eccCCeeeeEEHHHHHHHHhcc
Confidence 9999999999999999999996
No 8
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=4.3e-29 Score=233.57 Aligned_cols=167 Identities=25% Similarity=0.454 Sum_probs=147.7
Q ss_pred HHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHH
Q 019653 153 LDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNL 232 (337)
Q Consensus 153 ~~~l~~~~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~ 232 (337)
..+++|.++ .|++||+.+++ ++.+.|.++++|+++++++++|++++|+++|+||.++++++.+++++ ++.+.
T Consensus 23 ~~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~ 94 (292)
T PRK15094 23 LSQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDV 94 (292)
T ss_pred HHHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHH
Confidence 344555544 48999999998 45667999999999999999999999999999999999999999998 99999
Q ss_pred HHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--CCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCC
Q 019653 233 ILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYN 310 (337)
Q Consensus 233 l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G 310 (337)
+.+++|+|+|||+++.|+++|+|+.||++..... ...++.++ ++++.++|+++++.++++.|++++.|+++|+||||
T Consensus 95 i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G 173 (292)
T PRK15094 95 IIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG 173 (292)
T ss_pred HHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC
Confidence 9999999999998877899999999999864321 22346777 58888999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCC
Q 019653 311 KNAEQPASNPASKSAYGR 328 (337)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (337)
++.|++|+.|.++..+|+
T Consensus 174 ~viGiVTleDIle~ivGe 191 (292)
T PRK15094 174 GVSGLVTIEDILELIVGE 191 (292)
T ss_pred CEEEEeEHHHHHHHHhCC
Confidence 999999999988888875
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.67 E-value=3.2e-15 Score=135.41 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=128.6
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCHHHHHHHHhhh-------cccccccccccccCceEEEEeCCCCchHHHHHHHHhc
Q 019653 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGAL-------ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK 236 (337)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~l~~~l-------~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~ 236 (337)
-++.+|+...++ +-+|.-+++.+|.+.+.+-. ++.+.++.|||++ ++++++.+++++ ++.+++.+|
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 488999999987 44455678887765544332 6788999999996 899999999998 999999999
Q ss_pred CCcEEEEEcCCCCcEeEEeEhhhhhhcCC---------CCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEe
Q 019653 237 GHSRVPVYYEEPTNIIGLILVKNLLTIHP---------EDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (337)
Q Consensus 237 ~~sr~PV~~~~~~~ivGiv~~kDll~~~~---------~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvD 307 (337)
++..+||.|++ .+++|+|..+|+++-.. -.+.+++.+|..++.++.++++..+++..|.+.+.|..+|+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999986 89999999999997211 124568999888999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC
Q 019653 308 QYNKNAEQPASNPA 321 (337)
Q Consensus 308 e~G~~~~~~~~~~~ 321 (337)
+.|+..|+++-.|.
T Consensus 354 ~~g~lvGIvsQtDl 367 (382)
T COG3448 354 AAGKLVGIVSQTDL 367 (382)
T ss_pred CCCcEEEEeeHHHH
Confidence 99999999987664
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.64 E-value=1.1e-15 Score=151.47 Aligned_cols=150 Identities=15% Similarity=0.244 Sum_probs=128.3
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCCH-----HHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcC
Q 019653 163 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (337)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~g~l~~-----~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~ 237 (337)
..+|++|+..++.. .+..|.+.+ +|.+++++++++++. |++ +++++++++++. ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 45899999998874 445688884 899999999987765 543 677899999998 9999999999
Q ss_pred CcEEEEEcCCC--CcEeEEeEhhhhhhcCCCCCCCcccccc-ccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCC
Q 019653 238 HSRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAE 314 (337)
Q Consensus 238 ~sr~PV~~~~~--~~ivGiv~~kDll~~~~~~~~~v~~i~~-~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~ 314 (337)
++++||+|++. ++++|+|+.+|++.... .+.++.++|. .++.++++++++.++++.|++++.+.++|+|++|+..|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998754 68999999999986432 3457889876 38999999999999999999999999999999999999
Q ss_pred CCCCCCCcccc
Q 019653 315 QPASNPASKSA 325 (337)
Q Consensus 315 ~~~~~~~~~~~ 325 (337)
++|+.|.++..
T Consensus 190 iVT~~DIl~~~ 200 (450)
T TIGR01302 190 LITMKDIVKRR 200 (450)
T ss_pred EEEhHHhhhcc
Confidence 99998887653
No 11
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.63 E-value=8.4e-16 Score=152.36 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=126.1
Q ss_pred cccHHHHHHHHHhhcccccCC------CCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHh--
Q 019653 164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 235 (337)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~------g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~-- 235 (337)
.+++||+..+++. ..++ +.++++|++++++++++++.+|+++|++ ++.+++.+++++ ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4778899998873 3333 4799999999999999999999999985 889999999998 99999985
Q ss_pred -cCC--cEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCC
Q 019653 236 -KGH--SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 312 (337)
Q Consensus 236 -~~~--sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~ 312 (337)
.++ ..+||.|++ ++++|+|+.+|++... ++.+++++|.+++.++++++++.++++.|++++.+.++|+|++|+.
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l 238 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL 238 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence 233 345666654 8999999999998643 3457889876777889999999999999999999999999999999
Q ss_pred CCCCCCCCCcc
Q 019653 313 AEQPASNPASK 323 (337)
Q Consensus 313 ~~~~~~~~~~~ 323 (337)
.|.+|.+|.++
T Consensus 239 vGiIt~~Dil~ 249 (449)
T TIGR00400 239 VGIVTVDDIID 249 (449)
T ss_pred EEEEEHHHHHH
Confidence 99999877643
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.55 E-value=4.1e-15 Score=137.61 Aligned_cols=136 Identities=22% Similarity=0.307 Sum_probs=119.9
Q ss_pred HHHHHHhhh-----cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC
Q 019653 191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (337)
Q Consensus 191 E~~~l~~~l-----~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (337)
-..|+.+++ .-+-++|+|||+|..+..++..+++++ +..++..++||+||||+|.. .+++|+|+.||+....+
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP 247 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence 344555444 556679999999999999999999998 89999999999999999986 89999999999987543
Q ss_pred CCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccC--CCCc
Q 019653 266 EDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAY--GRSP 330 (337)
Q Consensus 266 ~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~--~~~~ 330 (337)
+.++..+|.+++.++.+.+++..+-+.|-..+..+.||+|++....|+.+|+|++++.- .+||
T Consensus 248 --~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qp 312 (432)
T COG4109 248 --STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQP 312 (432)
T ss_pred --CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCC
Confidence 56789999999999999999999999999999999999999999999999999988753 4444
No 13
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.51 E-value=9.4e-15 Score=130.14 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=115.3
Q ss_pred HHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC--CCCcc
Q 019653 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVK 272 (337)
Q Consensus 195 l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~ 272 (337)
+..+.+..+.+|+++|++ ++.++++|+|+. ++.+.+.+++....||.|+ |+++|+++..|+..+..++ +..++
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345568899999999996 789999999998 9999999999999999986 5999999999999865443 46789
Q ss_pred ccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCC
Q 019653 273 SVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYG 327 (337)
Q Consensus 273 ~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~ 327 (337)
++|.++++++.+|+.+.|+++.|..++....+|+|.+|...|+.|+-|-|++.-|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999998887654
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.48 E-value=1.8e-13 Score=136.91 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=125.5
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCC-----HHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcC
Q 019653 163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (337)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~ 237 (337)
..+|++||...+. +.+..|.|. +++.++++++.++ +++|.+ ++.++++++++. ++++.+.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4579999999987 355567777 4788899988875 456663 778899999998 9999999999
Q ss_pred CcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCcccccc-ccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCC
Q 019653 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQP 316 (337)
Q Consensus 238 ~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~-~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~ 316 (337)
++++||+|++ ++++|+|+.+|+..... ...++.++|. +++.++++++++.++++.|.+++.+.++|+|++|...|++
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999975 89999999999975432 3456888876 7889999999999999999999999999999999999999
Q ss_pred CCCCCccc
Q 019653 317 ASNPASKS 324 (337)
Q Consensus 317 ~~~~~~~~ 324 (337)
|+.|.++.
T Consensus 196 T~~DLl~~ 203 (486)
T PRK05567 196 TVKDIEKA 203 (486)
T ss_pred EhHHhhhh
Confidence 99887543
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.1e-12 Score=104.60 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=93.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--CCCCccccccccCceeCCCCCHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
++.+++.++++. ++.+.|.+++++++||.+++ ++++|+++.+|+.....+ .+.++.++|..++..+++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 456789999998 89999999999999999875 899999999999874322 12468888878888999999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+.|.+++.+.++|+|++|...|.+|.+|.++
T Consensus 80 ~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 80 RIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 9999999999999998899999999988753
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1.3e-12 Score=105.45 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=88.2
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC-----CCccc------cccccCceeC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVKS------VTIRRIPRVP 283 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~v~~------i~~~~~~~V~ 283 (337)
++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|++.....+. .++.+ .|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 467889999998 89999999999999999875 89999999999986432211 11222 2234567899
Q ss_pred CCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 284 ETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 284 ~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++++.++++.|.+++.+.++|+|++|...|+++++|.++
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999999999999988653
No 17
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.3e-12 Score=103.66 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=91.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC---CCCccccccccCceeCCCCCHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---~~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
++..++.+++++ ++++.+.+++++++||++++ ++++|+++.+|++.....+ +.++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456789999998 89999999999999999875 8899999999998754321 245778777888899999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++.|.+++.+.++|+|+ |...|.+++.|.++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999998 99999999987654
No 18
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1.3e-12 Score=103.39 Aligned_cols=106 Identities=17% Similarity=0.252 Sum_probs=91.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++.....+..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 466789999998 89999999999999999876 8999999999998654333345778877888999999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
|.+++.+.++|+|++|...|.+++.+..
T Consensus 81 ~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 81 MERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred HHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 9999999999999999999999887653
No 19
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=4e-12 Score=99.69 Aligned_cols=94 Identities=13% Similarity=0.232 Sum_probs=83.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
+++++++++++. ++.+.|.+++++.+||+|++.++++|+++.+|+.+... +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999998 99999999999999999864478999999999975321 6679999999999999
Q ss_pred HhhCCCeEEEEEecC-CCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQY-NKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~-G~~~~~~~~~~~~ 322 (337)
|.+++.+.++|+|++ |...|.++.+|-+
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 999999999999987 8999999998864
No 20
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=2.6e-12 Score=103.87 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=92.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC--------------CCCccccccccCc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--------------EVPVKSVTIRRIP 280 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~i~~~~~~ 280 (337)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567789999998 89999999999999999876 8899999999997643211 2357788778888
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 281 RVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 281 ~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++++++.++++.|.+++.+..+|+|++|...|.++.+|.+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 999999999999999999999999999999999999998874
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.7e-12 Score=101.67 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC-----CCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|++..... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999998 89999999999999999876 799999999999864321 13467788777888999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++.|.+.+.+.++|+|+ |...|.++..|.+
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~ 111 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG-GKLVGIVSIGDVV 111 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhh
Confidence 9999999999998999998 9999999887653
No 22
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=4.6e-12 Score=101.39 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=93.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC-----CCCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++..+++++++. ++.+.+.++++..+||+|++ ++++|+++.+|+.+... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 466789999998 89999999999999999876 88999999999986432 123567888778888999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++.|.+++.+..+|+|+.|...|.+++.|.++
T Consensus 80 ~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9999999999999999999899999999988653
No 23
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.7e-12 Score=101.56 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=92.4
Q ss_pred ceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHH
Q 019653 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILN 293 (337)
Q Consensus 214 ~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~ 293 (337)
+++.+++.+++++ ++.+.+.+++++++||+|++ ++++|+++.+|++... .+.++.++|.+++.++++++++.++++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~ 77 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH 77 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence 3677899999998 89999999999999999875 8999999999998643 245688887778889999999999999
Q ss_pred HHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 294 EFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 294 ~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
.|.+++.+.++|+|++|...|.++..+.+
T Consensus 78 ~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 78 MMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred HHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 99999999999999999999999887764
No 24
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=4.2e-12 Score=101.41 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=90.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC-C----CCCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P----EDEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~----~~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++.++++++++. ++++.+.+++++.+||++++.++++|+++.+|+++.. . ....++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567889999998 8999999999999999986437899999999998631 1 122467788778889999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++.|.+++.+.++|+|+ |...|.++.+|.+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~ 112 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIF 112 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhh
Confidence 9999999999999999998 9999999987753
No 25
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.32 E-value=2.4e-12 Score=122.64 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=102.3
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccc
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR 277 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~ 277 (337)
...+|+|+|++.+++.++++++++. ++++.|.++++..+||+|++ ++++|+|+.+|+.+.... .+.++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999999655788999999998 89999999998888888765 899999999999764322 23578899888
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++.++++++++.++++.|.+++.+..+|+| .|...|++++.|.++
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~ 322 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLR 322 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHh
Confidence 899999999999999999999999999997 488999999988754
No 26
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.32 E-value=5.3e-12 Score=99.83 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=92.2
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC--CCCccccccccCceeCCCCCHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|+++....+ ..++.+++.+++.+++++.++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 456788999998 8999999999999999986 7899999999998754322 2457777667888999999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
+.|++.+.+..+|+|++|...|.++.+|.++|
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~~ 110 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999887654
No 27
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.32 E-value=1.9e-12 Score=122.99 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=102.6
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC---CCCCCccccccccC
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI 279 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~i~~~~~ 279 (337)
..+|+++|.+..++.++++++++. ++.+.+.+++.+.+||+|++ ++++|+|+.+|+.+... ..+.++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999998643488999999998 89999999999999999876 89999999999876421 12356889988888
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 280 PRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 280 ~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
.+++++.++.++++.|.+++...++|+|++|...|.++++|.++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence 89999999999999999999999999999899999999988753
No 28
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.31 E-value=4.8e-12 Score=100.36 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=91.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|+...... +..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456789999998 89999999999999999876 889999999999864321 124677887788999999999999
Q ss_pred HHHHHhhCCCeEEEEEec-CCCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQ-YNKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe-~G~~~~~~~~~~~~ 322 (337)
+++.|++.+.+.++|+|+ +|...|.++..|.+
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 999999999999999998 89999999988763
No 29
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4.3e-12 Score=102.69 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=91.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC---------------CCCccccccccC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI 279 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------------~~~v~~i~~~~~ 279 (337)
++.++++++++. ++++.+.+++++++||++++.++++|+++.+|++....++ ..++.+++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456789999998 8999999999999999987447899999999998643221 235777777778
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 280 PRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 280 ~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++++++++.++++.|++.+.+.++|+|++|...|.++..|.++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999887643
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=7.4e-12 Score=100.02 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++..+++++++. ++.+.|.+.+++++||+|++ ++++|+++.+|++....+ ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345678999998 89999999999999999876 899999999999874322 123467777788899999999999
Q ss_pred HHHHHhhCCCeEEEEEecC--CCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQY--NKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~--G~~~~~~~~~~~~ 322 (337)
+++.|.+++.+.++|+|++ |...|.++.++.+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 80 ALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred HHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 9999999999999999998 7899999988764
No 31
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6.2e-12 Score=102.44 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=88.5
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCC-----------------Cccccccc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR 277 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~-----------------~v~~i~~~ 277 (337)
++.+++.++++. ++++.|.+++++.+||+|++ ++++|+++.+|++....++.. ...+.+.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567889999998 89999999999999999876 899999999999875422111 11234567
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.++++++++.++++.|.+++.+.++|+|++|...|.++.+|.+
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 788999999999999999999999999999999999999887653
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6e-12 Score=101.43 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=91.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC-------------CCCCccccccccCce
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR 281 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------------~~~~v~~i~~~~~~~ 281 (337)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++.... ...++.+++.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 99999999999999999876 899999999999864321 234567777778889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++++++.++++.|++++.+.++|+|++|...|.++.+|.+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 99999999999999999999999999989999999987764
No 33
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.29 E-value=1e-11 Score=98.14 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=91.5
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---CCCCccccccccCceeCCCCCHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
++.++++++++. ++.+.|.++++..+||+++ ++++|+++.+|+.+.... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456789999998 8999999999999999976 789999999999875421 2356778877888899999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++.|++.+.+.++|+|++|+..|.++.++.++
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999899999999887654
No 34
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=8.5e-12 Score=98.98 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=91.4
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---CCCCccccccccCceeCCCCCHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
++..++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|++..... .+.++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 345788999998 89999999999999999876 899999999999764321 2346778877888899999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++.|.+++.+.++|+|++|...|.++.++.++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999999999999999877653
No 35
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1e-11 Score=99.06 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=88.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcC-CcEEEEEcCCCCcEeEEeEhhhhhhcCCC--CCCCcccccc--ccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTI--RRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~i~~--~~~~~V~~~~~l~ 289 (337)
++.+++.++++. ++.+.+.+++ ++++||+|++ ++++|+++.+|++....+ .+.++.++|. .++..+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456789999998 8999887665 8999999875 889999999999875432 2346777753 2356899999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++.|++++.+.++|+|++|...|.++.+|.++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999999899999999988654
No 36
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.29 E-value=9.6e-12 Score=98.52 Aligned_cols=106 Identities=39% Similarity=0.619 Sum_probs=90.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC--CCccccccccCceeCCCCCHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
++..++.++++. ++.+.|.+++++.+||++++.++++|+++.+|+++....+. .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 677899999998 89999999999999999864378999999999987543221 345565 57888999999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.|.+++.+.++|+|++|...|.++++|..
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 80 EEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred HHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 999999999999999999999999987764
No 37
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=8.3e-12 Score=101.15 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=87.2
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC--C-----------CCccccccccCce
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--E-----------VPVKSVTIRRIPR 281 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~-----------~~v~~i~~~~~~~ 281 (337)
++..++.++++. ++++.+.+++++++||+|++.++++|+++.+|+++....+ . ....+++.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 466789999998 8999999999999999986437899999999988642110 0 0112345677889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
+++++++.++++.|.+++.+.++|+|++|...|.+|.+|.
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 9999999999999999999999999999999999998875
No 38
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=7.9e-12 Score=98.99 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=91.2
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC--CCCCCccccccccCceeCCCCCHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--EDEVPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--~~~~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
++.+++.+++++ ++.+.+.+.+++++||++++ ++++|+++.+|+.+... ..+.++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456788999998 89999998999999999875 78999999999987432 123467888778899999999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.|++++.+.++|+|++|...|.++.+|..
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 80 RLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred HHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 999999999999999889999999987763
No 39
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.28 E-value=1.4e-11 Score=97.19 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=90.5
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCC-CCCHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE-TLPLYEILN 293 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~-~~~l~~~l~ 293 (337)
+...++.+.++. ++.+.+.+++++++||+|++ ++++|+++.+|++.... .+.++.++|..++.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456789999998 89999999999999999876 89999999999875432 345677886555666666 999999999
Q ss_pred HHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 294 EFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 294 ~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
.|++++.+.++|+|++|...|.++.+|.+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~~ 110 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110 (110)
T ss_pred HHHHhCCCeeeEEcCCCCEEEEEEhhhhhcC
Confidence 9999999999999999999999999987653
No 40
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=8.1e-12 Score=102.59 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=90.4
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC----C--------------------CC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----E--------------------VP 270 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~--------------------~~ 270 (337)
++.++++++++. ++.+.+.+.+++++||+|++ ++++|+++.+|+....... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999876 8999999999998643211 1 15
Q ss_pred ccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 271 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 271 v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+.++|.+++.++++++++.++++.|.+.+.+.++|+|+ |...|.++.+|.++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 67777778889999999999999999999999999998 99999999988754
No 41
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.27 E-value=1.1e-11 Score=97.84 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=90.4
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC---CCccccccccCceeCCCCCHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
++..++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|+......+. .++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999998 8999999999999999986 78999999999987543221 14567777889999999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.|++++.+.++|+|++|...|.++..|..
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 9999999999999999989999999988764
No 42
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1.1e-11 Score=98.86 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC---------CCCccccccccCceeCCC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRVPET 285 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------~~~v~~i~~~~~~~V~~~ 285 (337)
++.+++.++++. ++.+.+.+++++.+||+|++ ++++|+++.+|+++..... +.++.++|.+++..++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 577899999998 99999999999999999875 7899999999998754221 345778877788899999
Q ss_pred CCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 286 LPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 286 ~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++.++++.|.+.+ ..+|+|++|...|.+|.+|.++
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 99999999998764 5789999999999999887643
No 43
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.26 E-value=1.8e-11 Score=96.08 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=88.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++.+++.++++. ++.+.|.+++++.+||++++ ++++|+++.+|+++... .++.++|.++...+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999998 89999999999999999875 89999999999987532 24677766666789999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
|.+++.+.++|+|++|...|.++.++..
T Consensus 77 ~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred HHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 9999999999999999999999887653
No 44
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.26 E-value=2.1e-11 Score=96.03 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=91.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++..+++++++. ++.+.+.+++++.+||++++ ++++|+++.+|+..... ...++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 89999999999999999876 88999999999986532 2346778777788899999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
|++.+.+.++|+|++|...|.++..+.+
T Consensus 80 ~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred HHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 9999999999999999999999987764
No 45
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=2.1e-11 Score=95.76 Aligned_cols=104 Identities=13% Similarity=0.260 Sum_probs=90.4
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++.+++.+.+++ ++.+.+.+.+++++||+++ ++++|+++.+|++... .+.++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567789999998 8999999889999999975 7899999999998642 2345788877778899999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
|++++.+.++|+|++|...|.++.++.++
T Consensus 78 ~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 78 MFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999887754
No 46
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.7e-11 Score=98.80 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=91.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC------C-------CCCCccccccccCce
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------E-------DEVPVKSVTIRRIPR 281 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------~-------~~~~v~~i~~~~~~~ 281 (337)
++.++++++++. ++++.+.+++++.+||+|++ ++++|+++.+|++.... . ...++.+++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567789999998 89999999999999999875 89999999999986310 0 234566776678889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++++++.++++.|++++.+.++|+|++|...|.++..+.++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 999999999999999999999999999999999999887653
No 47
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=1.7e-11 Score=101.74 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=89.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---------------------------C
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D 267 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------~ 267 (337)
++.+++.++++. ++++.+.+++++.+||+|++ ++++|+++.+|++..... .
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 466789999998 99999999999999999875 899999999999874321 1
Q ss_pred CCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 268 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 268 ~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |...|.++.++.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~ 133 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDIC 133 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHh
Confidence 23577887778889999999999999999999999999997 9999999987654
No 48
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.24 E-value=7.5e-12 Score=127.98 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=100.8
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC--C-C-CCCCcccccc
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P-E-DEVPVKSVTI 276 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~-~-~~~~v~~i~~ 276 (337)
++..+|+|+|++ +..+++++++++ ++.+.+.+++++.+||+|++ ++++|+|+.+|+.+.. . . ++.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 466789999986 456789999998 89999999999999999876 8999999999998732 1 1 2356788888
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCC--CCCCCCCCCCCc
Q 019653 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYN--KNAEQPASNPAS 322 (337)
Q Consensus 277 ~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G--~~~~~~~~~~~~ 322 (337)
+++..+++++++.|+++.|.+++.+..+|+|++| ...|.++++|.+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl 567 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLL 567 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHH
Confidence 8889999999999999999999999999999874 588999998864
No 49
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.24 E-value=1.2e-11 Score=123.01 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=102.7
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCce
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~ 281 (337)
...+++++|++ +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 35667899975 778999999998 99999999999999999875 78999999999975432 35688998899999
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++++++.++++.|.+++.+.++|+|++|...|+++++|.++
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~ 202 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALR 202 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 999999999999999999999999999999999999988754
No 50
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=3.3e-11 Score=96.99 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=89.4
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccc--cCceeCCCCCH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRVPETLPL 288 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~--~~~~V~~~~~l 288 (337)
+..++++++++. ++++.|.+++.+.+||.|++ ++++|+++.+|+...... .+.++.++|.+ ++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456789999998 89999999999999999875 789999999998874321 13456677653 67899999999
Q ss_pred HHHHHHHhhCCCeEEEEEecC---CCCCCCCCCCCCcc
Q 019653 289 YEILNEFQKGHSHMAVVVRQY---NKNAEQPASNPASK 323 (337)
Q Consensus 289 ~~~l~~m~~~~~~~aiVvDe~---G~~~~~~~~~~~~~ 323 (337)
.++++.|.+++.+.++|+|+. |...|.+++++.++
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999987 57899999988653
No 51
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.23 E-value=5.1e-12 Score=105.07 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=106.7
Q ss_pred CCCCCCHHH---HHHHHhhhcc--cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEh
Q 019653 183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (337)
Q Consensus 183 ~~g~l~~~E---~~~l~~~l~l--~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~ 257 (337)
|.|.+++.= +.+++...+- ..++++.+|+. +++.+.+++++. ++.+.|+++|||.+||.++ |+++|-++-
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 457776642 2333333222 55789999984 899999999998 9999999999999999986 799999999
Q ss_pred hhhhhcCCC-----CCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCC
Q 019653 258 KNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYG 327 (337)
Q Consensus 258 kDll~~~~~-----~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~ 327 (337)
.|+.+...+ .+..++++|-.+.+.|+++.++..+-+.+..++ -.+|+ |+|+++|+.|.+|.++...|
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 999875422 245788998889999999999988877777654 23444 88999999999998765444
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=3.2e-11 Score=95.99 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=89.4
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC---CCCCCccccccccCceeCCCCCHHHHH
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
..+++.++++. ++++.+.++++..+||++++ ++++|+++.+|++.... ....++.++|..++..+++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 45688999998 89999999999999999876 88999999999875321 123457788766788899999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.|.+++.+.++|+|++|...|.++..|.+
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 82 ALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred HHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 999999999999999999999999988764
No 53
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2.6e-11 Score=96.28 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=89.5
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC-CC---CCCCccccccccCceeCCCCCHHHH
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~---~~~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
...++.++++. ++++.+.+++++++||+|++ ++++|+++.+|+.+.. .. .+.++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 45678999998 89999999999999999875 8899999999998632 11 2346778877888899999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.|++++.+.++|+|++|...|.++..+.+
T Consensus 81 ~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred HHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 9999999998899999999999999887654
No 54
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.22 E-value=2.6e-11 Score=97.22 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=90.5
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--------------CCCCccccccccCc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~i~~~~~~ 280 (337)
++.+++.++++. ++++.+.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999998 8999999999999999986 799999999999875421 12456677777888
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 281 RVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 281 ~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++++++.++++.|++++.+.++|+|++|...|.++..|.++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999999999999999899999999887643
No 55
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=4.6e-11 Score=93.99 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=88.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|++.... +.++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 577889999998 89999999999999999876 88999999999986432 234667667788899999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
|.+++.+.++|+|+ |...|.++..+.++
T Consensus 78 ~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 78 MVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 99999999999985 78889998877654
No 56
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=4.7e-11 Score=93.00 Aligned_cols=93 Identities=9% Similarity=0.120 Sum_probs=82.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++.++++++++. ++++.|.+++++.+||+|++ ++++|+++.+|+..... +.+++++.++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence 467889999998 89999999999999999875 89999999999986321 6689999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
|++++.+.++|+|+.|...|+++.+|.+
T Consensus 67 m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 67 MKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred HHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 9999999999999889999999988764
No 57
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.5e-11 Score=100.10 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=90.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC--------------------------CCC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE 268 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--------------------------~~~ 268 (337)
++.++++++++. ++++.|.++++.++||+|++ ++++|+++.+|+++... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567789999998 89999999999999999875 88999999999976321 122
Q ss_pred CCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 269 ~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
.++.++|.+++..+++++++.++++.|++.+.+.++|+| +|...|.++.+|.+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~ 133 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLL 133 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhh
Confidence 457777767788999999999999999999999999999 89999999998864
No 58
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=4.8e-11 Score=97.22 Aligned_cols=106 Identities=13% Similarity=0.240 Sum_probs=88.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC-----------------CCCCccccccc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----------------DEVPVKSVTIR 277 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----------------~~~~v~~i~~~ 277 (337)
++..++.++++. ++++.+.+.+++.+||++++ ++++|+++.+|+...... .+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 99999999999999999876 889999999998753210 12357788778
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEe--cCCCCCCCCCCCCCc
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR--QYNKNAEQPASNPAS 322 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvD--e~G~~~~~~~~~~~~ 322 (337)
+++++++++++.++++.|.+.+.+.++|++ +.|...|.++.+|.+
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 889999999999999999999988888873 469999999998864
No 59
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=3e-11 Score=98.45 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=85.2
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC----------CCCCCCccccccccCce--e-
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPR--V- 282 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----------~~~~~~v~~i~~~~~~~--V- 282 (337)
+.+++.++++. ++++.|.++++..+||.+++ ++++|+++.+|+.... .....++.++|.++... +
T Consensus 3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~ 80 (126)
T cd04640 3 PIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALD 80 (126)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhcccc
Confidence 56789999998 89999999999999999875 7899999999998521 11234577886544432 3
Q ss_pred ---CCCCCHHHHHHHHhhCCCeEEEEEecC-CCCCCCCCCCCCcc
Q 019653 283 ---PETLPLYEILNEFQKGHSHMAVVVRQY-NKNAEQPASNPASK 323 (337)
Q Consensus 283 ---~~~~~l~~~l~~m~~~~~~~aiVvDe~-G~~~~~~~~~~~~~ 323 (337)
++++++.++++.|.+++.+.++|+|+. |...|.++++|.++
T Consensus 81 ~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 81 LEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 378999999999999999999999986 78899999987643
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=4e-11 Score=94.90 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=89.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc-C-C--CCCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI-H-P--EDEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~-~-~--~~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++.+++.++++. ++.+.+.+++++++||+++ ++++|+++.+|++.. . . ..+.++.+++.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 466789999998 8999999999999999986 899999999999852 1 1 1234677887788899999999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++.|++.+.+.++|+|+ |...|.++..|.++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 999999999999999998 99999999887643
No 61
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=4.7e-11 Score=94.49 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=90.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--CCCCccccccccCceeCCCCCHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 292 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~i~~~~~~~V~~~~~l~~~l 292 (337)
++.+++.++++. ++.+.+.+.+++++||+|+ ++++|+++.+|+...... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 466789999998 8999999999999999986 789999999999864321 23567788778888999999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.|++++.+.++|+| +|...|.++..|.+
T Consensus 80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~ 108 (110)
T cd04595 80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLL 108 (110)
T ss_pred HHHHHcCCCeeEEEe-CCEEEEEEEhHHhh
Confidence 999999999999998 79999999988764
No 62
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.19 E-value=3.8e-11 Score=95.31 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=90.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+++.+.... ...++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455678999998 89999998899999999876 789999999998864321 123688887778889999999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++.|.+++.+.++|+|++|...|.++..+.+
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence 99999999999999999889999999887654
No 63
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=6.4e-11 Score=92.67 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=88.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~ 294 (337)
++..++.++++. ++++.+.+++++.+||+| + ++++|+++.+|+..... +.++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 899999999999999997 3 79999999999987542 345778877788899999999999999
Q ss_pred HhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 295 FQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 295 m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
|.+++...++|+|+ |...|.++..+.+
T Consensus 77 ~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 77 MEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred HHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 99999999999998 9999999987764
No 64
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2.3e-11 Score=98.08 Aligned_cols=105 Identities=11% Similarity=0.137 Sum_probs=89.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--------------CCCCccccccccCc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~i~~~~~~ 280 (337)
++..+++++++. ++.+.+.+++++++||+|+ ++++|+++.+|+...... ...++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 466789999998 8999999999999999985 789999999999753210 12356777778888
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 281 RVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 281 ~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++++++.++++.|++++.+.++|+|++|...|.++.++.+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 999999999999999999999999999999999999987764
No 65
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.19 E-value=4.6e-11 Score=110.48 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=95.6
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC---CCCCCccccccccCc
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP 280 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~i~~~~~~ 280 (337)
++|+|+|.+. ++..+++++++. ++++.+.+.+++.+||+|++ ++++|+++.+|+.+... ..+.++.++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 89999999999999999876 88999999999987432 124568899888888
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCC
Q 019653 281 RVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQP 316 (337)
Q Consensus 281 ~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~ 316 (337)
.+++++++.++++.|.+++.+.++|+|+.|...|.+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 999999999999999999999999999989888865
No 66
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=5e-11 Score=94.35 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=86.1
Q ss_pred EeCCCCchHHHHHHHHhcC-----CcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHH
Q 019653 219 IDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILN 293 (337)
Q Consensus 219 v~~~~~l~~~~~~~l~~~~-----~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~ 293 (337)
+++++++. ++++.+.+++ +..+||+|++ ++++|+++.+|++... .+.++.+++..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 46788998 8999998877 4678999865 8899999999998643 245678886677889999999999999
Q ss_pred HHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 294 EFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 294 ~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
.|.+++.+.++|+|++|...|.++..+.++
T Consensus 78 ~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 78 LFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred HHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 999999999999999999999999887653
No 67
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.5e-11 Score=96.44 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=88.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC------CCCCCccccccccCceeCCCCCH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRVPETLPL 288 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------~~~~~v~~i~~~~~~~V~~~~~l 288 (337)
++..++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+++... ....++.++|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 89999999999999999876 78999999999986321 12356778877788899999999
Q ss_pred HHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 289 YEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 289 ~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
.++++.|.+++.+.++|+|+ |...|.++.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~ 112 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVL 112 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHh
Confidence 99999999999998999998 8899999887653
No 68
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.18 E-value=6.6e-11 Score=93.76 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=88.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
+...++.+++++ ++++.|.+++++.+||+|+ ++++|+++.+|++..... .+.++.++|.++...+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 345788999998 8999999999999999986 689999999999864321 234677887778889999999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++.|.+++.+.++|+|+ |...|.++..+.+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~ 109 (111)
T cd04589 79 ALLLMTRHRIHRVVVREG-GEVVGVLEQTDLL 109 (111)
T ss_pred HHHHHHHhCccEEEEeeC-CEEEEEEEhHHhh
Confidence 999999999999999986 8889999887753
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=6.3e-11 Score=94.49 Aligned_cols=105 Identities=11% Similarity=0.271 Sum_probs=86.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcC-CcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCCccccccccCceeCCC--CC
Q 019653 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPET--LP 287 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~i~~~~~~~V~~~--~~ 287 (337)
++..++.+.++. ++++.+.+++ +..+||.++ ++++|+++.+|++..... .+.++.++|.+++.+++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 345688999998 8999998888 667787763 789999999999874321 1246778877778888887 78
Q ss_pred HHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 288 LYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 288 l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+.++++.|.+++.+.++|+|++|...|.++++|.+
T Consensus 79 l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred HHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 99999999999999999999999999999998764
No 70
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=5.3e-11 Score=95.09 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=88.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC--CCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCC--CCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE--TLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~--~~~l~~ 290 (337)
++.+++.++++. ++++.+.+++++.+||+|+. .++++|+++.+|++.... ...+++++|.++...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456788999998 89999999999999999862 378999999999875432 234577887666666644 999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++.|++++.+.++|+|++|...|.+++.+.++
T Consensus 81 ~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 81 ANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999999999887654
No 71
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.17 E-value=5.9e-11 Score=93.96 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred ceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC--CCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHH
Q 019653 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEI 291 (337)
Q Consensus 214 ~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~ 291 (337)
++...++++++++ ++.+.+.+++++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 4677889999998 89999999999999999872 3789999999999865421 566788899999999999
Q ss_pred HHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 292 LNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 292 l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.|++++.+.++|++ +|...|.+++.|..
T Consensus 74 ~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~ 103 (105)
T cd04591 74 HQLFRKLGLRHLLVVD-EGRLVGIITRKDLL 103 (105)
T ss_pred HHHHHHcCCCEEEEEE-CCeEEEEEEhhhhh
Confidence 9999999999999995 68999999998764
No 72
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.17 E-value=1e-10 Score=91.93 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred EEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhh
Q 019653 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQK 297 (337)
Q Consensus 218 ~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~ 297 (337)
++++++++. ++++.+.+++++++||+++ ++++|+++.+|+..... .++.++|..++.+++++.++.++++.|++
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 578899998 8999999999999999985 88999999999986432 34667777778899999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 298 GHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 298 ~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.+.++|+| .|...|.++.+|..
T Consensus 79 ~~~~~~~Vv~-~~~~iGvit~~dl~ 102 (104)
T cd04594 79 NKTRWCPVVD-DGKFKGIVTLDSIL 102 (104)
T ss_pred cCcceEEEEE-CCEEEEEEEHHHhh
Confidence 9999999998 48999999987753
No 73
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.16 E-value=6.8e-11 Score=93.77 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=88.3
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh-cC-C--CC-CCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IH-P--ED-EVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~-~--~~-~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++.+++.+++++ ++.+.+.+++++++||.++ ++++|+++.+|++. .. . .. ..++.++|.+++..+++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456788999998 8999999999999999985 88999999999874 21 1 11 1467788777888999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++.|.+++.+.++|+|++|...|.++.+|.+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred HHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 999999999998889999989999999887764
No 74
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.16 E-value=1.2e-10 Score=116.54 Aligned_cols=126 Identities=10% Similarity=0.217 Sum_probs=103.7
Q ss_pred HHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC--CCcEeEEeEhhhhhhcCCCC
Q 019653 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED 267 (337)
Q Consensus 190 ~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~ 267 (337)
++.+.++++.+.+ +.|++ +.+++++++++. ++++.+.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 87 ~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~ 157 (495)
T PTZ00314 87 EQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK 157 (495)
T ss_pred HHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence 4455666665444 46653 567899999998 99999999999999999863 36899999999997543 23
Q ss_pred CCCccccccc--cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 268 EVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 268 ~~~v~~i~~~--~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
+.++.++|.+ ++.++++++++.|+++.|++++.+.++|+|++|...|++|+.|.++.
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 4678899765 78899999999999999999999999999999999999999887543
No 75
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.15 E-value=1e-10 Score=91.39 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=89.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC----CCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~----~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++..++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+........ ..+.+++..+..++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456788999998 89999999999999999876 89999999999987543211 1145666788889999999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++.|.+.+.+.++|+|++|...|.++.++.+
T Consensus 80 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 80 AAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 99999999999999999999999999987654
No 76
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.14 E-value=7.8e-11 Score=94.59 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=88.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC-------------CCCCCccccccccCce
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 281 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~i~~~~~~~ 281 (337)
++.+++.++++. ++.+.+.+++++++||+|++ ++++|+++.+|+..... ....++.++|.+++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 356788999998 89999999999999999886 89999999999876421 1124577777778889
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++++++.++++.|++++.+.++|+|+ |...|.++..+.+
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~ 119 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLL 119 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhh
Confidence 999999999999999999998999987 8999999887654
No 77
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=1.8e-10 Score=91.28 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=88.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh-cCC-C---CCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHP-E---DEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~~-~---~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++.+++.++++. ++.+.+.+++++.+||+++ ++++|+++.+|++. ... + ...++.++|.+.+..+++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 456789999998 9999999999999999986 89999999999863 211 1 12247788777888999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++.|++.+.+.++|+|++|...|.++..|..
T Consensus 79 ~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 79 EAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred HHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 999999999999999999889999999987764
No 78
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.14 E-value=5.8e-11 Score=96.95 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=89.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC----CCCCCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++.++++++++. ++++.|.+++++.+||+|++ ++++|+++.+|++... ...+.++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567889999998 99999999999999999876 7899999999998521 12346799999999999999999999
Q ss_pred HHHHHh---------hCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 291 ILNEFQ---------KGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 291 ~l~~m~---------~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+.+.|. +++.+..+|+|++|...|++|+.|.++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~ 122 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence 999653 335566778898999999999998754
No 79
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.13 E-value=6.8e-11 Score=118.25 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=93.4
Q ss_pred EEEeCCCCchHHHHHHHHhcCCcEEEEEcCC--CCcEeEEeEhhhhhhcCCCCCCCccccccc--cCceeCCCCCHHHHH
Q 019653 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIR--RIPRVPETLPLYEIL 292 (337)
Q Consensus 217 ~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~i~~~--~~~~V~~~~~l~~~l 292 (337)
.++++++++. ++++.|.+++++.+||+|++ .++++|+|+.+|+.......+.++.++|.+ ++.++++++++.+++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl 186 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence 4789999998 99999999999999999862 379999999999975332335678999765 667899999999999
Q ss_pred HHHhhCCCeEEEEEecCCCCCCCCCCCCCcccc
Q 019653 293 NEFQKGHSHMAVVVRQYNKNAEQPASNPASKSA 325 (337)
Q Consensus 293 ~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~ 325 (337)
+.|.+++.+..||+|++|...|++|+.|.++.-
T Consensus 187 ~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 187 DIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 999999999999999999999999998886643
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.13 E-value=2e-10 Score=91.00 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=87.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC--C---CCCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P---EDEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~---~~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++..+++++++. ++++.+.+++++.+||+++ ++++|+++.+|++... . ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 8999999999999999986 4899999999998732 1 123467788767788999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++++.|.+++.+.++|+|++ ...|.+++.|.+
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~ 110 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110 (112)
T ss_pred HHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhh
Confidence 99999999999999999875 889999988764
No 81
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=1.5e-10 Score=115.93 Aligned_cols=125 Identities=12% Similarity=0.164 Sum_probs=102.4
Q ss_pred HHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC--CCcEeEEeEhhhhhhcCCC
Q 019653 189 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPE 266 (337)
Q Consensus 189 ~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~ 266 (337)
++.++.++.+.+.. ..|++ +++++++++++. ++++.+.+++++.+||+|++ .++++|+|+.+|+.... .
T Consensus 90 E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~ 160 (505)
T PLN02274 90 EEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-D 160 (505)
T ss_pred HHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-c
Confidence 34456666666442 22653 678899999998 89999999999999999863 26899999999997543 3
Q ss_pred CCCCcccccccc--CceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 267 DEVPVKSVTIRR--IPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 267 ~~~~v~~i~~~~--~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
.+.++.++|.++ ..++++++++.++++.|++++.+.++|+|+.|...|++|+.|.+
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIl 218 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVK 218 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 356789997655 67999999999999999999999999999999999999996553
No 82
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.3e-10 Score=93.46 Aligned_cols=105 Identities=13% Similarity=0.234 Sum_probs=89.1
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--------------CCCCccccccccCc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~i~~~~~~ 280 (337)
++..++.++++. ++.+.+.+++++++||+++ ++++|+++.+|+...... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 356789999998 8999999999999999985 899999999999864221 12356777777888
Q ss_pred eeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 281 RVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 281 ~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++++++.++++.|.+.+.+.++|+|+ |...|.++..|.++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999999999999998 99999999887643
No 83
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.11 E-value=8.4e-11 Score=116.92 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=98.2
Q ss_pred HHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----CCCC
Q 019653 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVP 270 (337)
Q Consensus 195 l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~ 270 (337)
..+. +..++|+++|.+ ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++.... .+.+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 788999999975 688899999998 89999999999999999875 789999999999863211 2346
Q ss_pred ccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 271 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 271 v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+.++|.+++.++++++++.++++.|++++ .. ||+++|...|++|++|.++
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~~g~liGvvt~~dll~ 451 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SA-IVTEEGKPIGVVTKIDLLS 451 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--ee-EEEECCEEEEEEEHHHHHH
Confidence 88887777889999999999999998864 34 4555789999999988643
No 84
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.10 E-value=1.9e-10 Score=90.51 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=85.3
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCC----CCCccccccccCceeCCCCCHHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRVPETLPLYE 290 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~i~~~~~~~V~~~~~l~~ 290 (337)
++.+++.++++. ++.+.+.+++++++||+++ ++++|+++.+|+.+..... ..++.+++.+++..+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999998 8999999999999999986 7899999999998753221 24577777677889999999999
Q ss_pred HHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 291 ILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 291 ~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++.|++ ..+ ++|+|++|...|.++.+|.+
T Consensus 79 ~~~~~~~-~~~-~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 79 LSELLDR-GNV-AVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred HHHHHHh-CCc-eeEEecCCeEEEEEeHHHhh
Confidence 9999998 444 67889999999999987753
No 85
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=2.7e-10 Score=95.21 Aligned_cols=104 Identities=10% Similarity=0.197 Sum_probs=88.0
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----------------------------
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------- 266 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------- 266 (337)
++.+++.++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 466889999998 8999999999999999985 789999999999764211
Q ss_pred --------CCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 267 --------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 267 --------~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
...++.++|.+++..+++++++.++++.|++++.+.++|+|+ |...|.++.+|.+
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~ 141 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDII 141 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhh
Confidence 123456666778889999999999999999999998999988 8899999988764
No 86
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.06 E-value=4.4e-10 Score=110.40 Aligned_cols=130 Identities=22% Similarity=0.231 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCC-----cEEEEEcCCCCcEeEEeEhhhh
Q 019653 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLILVKNL 260 (337)
Q Consensus 186 ~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~-----sr~PV~~~~~~~ivGiv~~kDl 260 (337)
.++++|++.++..+..++-+++.+|++ +.++++.+.|++ ++++++++.+. ..+.|+|++ ++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 478899999999999999999999996 899999999998 99999995543 356777876 789999999999
Q ss_pred hhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 261 LTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 261 l~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
+...+ +..++++|.+.+.+|+.+++..++.+.|++++.-.++|||+.|...|.+|.+|.
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDi 248 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDI 248 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHH
Confidence 86543 567899988888999999999999999999999999999999999999998664
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=3.9e-10 Score=89.35 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=86.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC-----CCCCccccccccCceeCCCCCHH
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 289 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~i~~~~~~~V~~~~~l~ 289 (337)
++..++.++++. ++++.+.+++++.+||.+ + ++++|+++.+|+++.... ...++.++|..++..+++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567789999998 899999888888887765 4 789999999999864221 13467888767778999999999
Q ss_pred HHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 290 EILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 290 ~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++.|.+++.+..+|+|+ |...|.++.+|.++
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999985 88999999887643
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.04 E-value=2.9e-10 Score=113.05 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=100.6
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCce
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~ 281 (337)
...++.++|++ +.+++++++++. ++++.|.+++++.+||.|+ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceE
Confidence 35668888875 567899999998 9999999999999999874 68999999999975432 35689999899999
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
+++++++.++++.|.+++.+.++|+|++|...|+++.+|.++
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 999999999999999999999999999999999999988754
No 89
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.04 E-value=8.3e-10 Score=91.59 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=77.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCC---C------------ccccc----
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---P------------VKSVT---- 275 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~------------v~~i~---- 275 (337)
++..+++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++....... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999998 99999999999999999876 899999999999874321110 1 22343
Q ss_pred -----cccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCC
Q 019653 276 -----IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKN 312 (337)
Q Consensus 276 -----~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~ 312 (337)
.+++.++++++++.++++.|.+++.+.++|+|+.++.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~ 121 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR 121 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence 3567899999999999999999999999999976543
No 90
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=3.7e-10 Score=90.44 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=85.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcC-CcEEEEEcCCCCcEeEEeEhhhhhhcCCC-------CCCCccccccccCceeCCCC
Q 019653 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRVPETL 286 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------~~~~v~~i~~~~~~~V~~~~ 286 (337)
++.+++.++++. ++.+.+.+.+ ++.+||+++ ++++|+++.+|++..... .+.++.++|..++..+++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345678999998 8999998877 899999986 899999999999864221 23568888777888999999
Q ss_pred CHHHHHHHHhhCCCe---EEEEEecCCCCCCCCCCCCCc
Q 019653 287 PLYEILNEFQKGHSH---MAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 287 ~l~~~l~~m~~~~~~---~aiVvDe~G~~~~~~~~~~~~ 322 (337)
++.++++.|.+++.+ ..+|+|++|...|.++..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 999999999988752 346888899999999887654
No 91
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=83.74 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=93.2
Q ss_pred cccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC--C-CccccccccCceeCC
Q 019653 208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--V-PVKSVTIRRIPRVPE 284 (337)
Q Consensus 208 dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~-~v~~i~~~~~~~V~~ 284 (337)
++|. .++.++.++.++. ++.+.|.+++++.+||.++ ++++|+++.+|+.+....+. . ++.++|.+++..+.+
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4788899999998 9999999999999999975 37999999999998653322 2 478887778999999
Q ss_pred CCCHHHHHHHHhh-CCCeEEEEEecCC-CCCCCCCCCCC
Q 019653 285 TLPLYEILNEFQK-GHSHMAVVVRQYN-KNAEQPASNPA 321 (337)
Q Consensus 285 ~~~l~~~l~~m~~-~~~~~aiVvDe~G-~~~~~~~~~~~ 321 (337)
+.++.++++.|.+ ++.+..+|+|+.+ ...|++++.|.
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 9999999999999 7999999999986 99999988764
No 92
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.76 E-value=1.3e-08 Score=71.19 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=49.9
Q ss_pred cccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 206 V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
|+|+|++ ++.++++++++. ++.+.|.+++++++||+|++ ++++|+++.+|+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5789987 788999999998 99999999999999999887 999999999999864
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.71 E-value=3e-08 Score=101.06 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=97.9
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC----------------
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------- 266 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------- 266 (337)
..+|+|+|++ ++.++++++++. ++++.|.+++++++||+|++ ++++|+++.+|+.+...+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3679999985 778899999998 99999999999999999876 899999999998751000
Q ss_pred --------------------------------------------------------------------------------
Q 019653 267 -------------------------------------------------------------------------------- 266 (337)
Q Consensus 267 -------------------------------------------------------------------------------- 266 (337)
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence
Q ss_pred ---------------------CCCCcccccc-ccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 267 ---------------------DEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 267 ---------------------~~~~v~~i~~-~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
...+++++|. +++.++++++++.++.+.|.+++.+..||+|++|...|+++++|..+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 0113455666 67889999999999999999999999999999999999999877644
No 94
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.66 E-value=2.4e-08 Score=98.35 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=108.5
Q ss_pred hhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC----CCCCCCcc
Q 019653 197 GALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVK 272 (337)
Q Consensus 197 ~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~ 272 (337)
+.-+|--.++.++|+. ..+++++..++. ++.++|.++|.|.+-+.+++ +...|||+.+|+.... .....++.
T Consensus 142 ~~~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~ 217 (610)
T COG2905 142 GESEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVS 217 (610)
T ss_pred ccchHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchh
Confidence 3344455678899985 567899999998 99999999999988888876 8899999999998732 22356899
Q ss_pred ccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCCCCce
Q 019653 273 SVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYGRSPL 331 (337)
Q Consensus 273 ~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~~~~~ 331 (337)
++|..|+..|..++.+.|++-.|.+++.+..+|. |+|.+.|++|..|-+..+-.+|-+
T Consensus 218 evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s~~~~v 275 (610)
T COG2905 218 EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFSQNSIV 275 (610)
T ss_pred hhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhCCCcee
Confidence 9999999999999999999999999999999887 569999999998887665555443
No 95
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.32 E-value=3.5e-07 Score=90.97 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=102.4
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCC----cEeEEeEhhhhhhcCC------C---
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT----NIIGLILVKNLLTIHP------E--- 266 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~----~ivGiv~~kDll~~~~------~--- 266 (337)
.+.+++++|+|.+ ++++++.-+.+. .+.+.++.+.|..+||+|+..+ ++.|++-.+.++...+ +
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 4567889999986 899999999998 8999999999999999986433 6889888877763110 0
Q ss_pred -----------------C----------------CCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCC
Q 019653 267 -----------------D----------------EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNA 313 (337)
Q Consensus 267 -----------------~----------------~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~ 313 (337)
. -.++..+|-..+++|+++|++..++..|++-+....+||+...+..
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 0 0133444445577899999999999999999999999999999999
Q ss_pred CCCCCCCCc-cccCCCCce
Q 019653 314 EQPASNPAS-KSAYGRSPL 331 (337)
Q Consensus 314 ~~~~~~~~~-~~~~~~~~~ 331 (337)
|++||+|+. ...-|+.|-
T Consensus 735 gilTR~D~~~~~~l~~~~~ 753 (762)
T KOG0474|consen 735 GILTRKDLARYRILGLEPH 753 (762)
T ss_pred EEEehhhhhhHHHhccccc
Confidence 999999986 445555553
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=2.9e-06 Score=83.09 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=91.0
Q ss_pred cccccccccCce-EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCcee
Q 019653 204 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRV 282 (337)
Q Consensus 204 ~~V~dIMtpr~~-v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V 282 (337)
.++.++|.+... ......+.+.. ++++.|.+.+.++..|+|++ +++.|+++.+++.....+ ...+.+.+......+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888854221 12334556776 89999999999999999986 899999999999765432 235666656677899
Q ss_pred CCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 283 PETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 283 ~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
++++++.+++..+.+...+ ++|+|+.|...|.++..+.++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~ 390 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLR 390 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHH
Confidence 9999999999999998877 778999999999998866544
No 97
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.13 E-value=3.4e-06 Score=80.36 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=115.1
Q ss_pred ccccHHHHHHHHHhhccc--ccCCCCCCHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcE
Q 019653 163 ALFRRAELKTLVNLHGNE--AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240 (337)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e--~~~~g~l~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr 240 (337)
+.+|+.|.-..+...+-- .|. .-=.+++..++.++-.|..-- ++ +.+.+.++.++. ++++.-..++|+.
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHh-Nctpe~QA~~v~~vK~~~~g~---~~----~p~v~sp~~tvg-~v~~~k~~~gF~g 141 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHH-NCTPEDQADMVRRVKNYENGF---IN----NPIVISPTTTVG-EVKEAKEKHGFSG 141 (503)
T ss_pred cccchhHHHHHHHhcCCceeeec-CCCHHHHHHHHHHHHHhhccc---cc----CCcccCCcccch-hhhhhcccccccc
Confidence 456777777666543211 001 111567788888888777532 23 345678899998 8999999999999
Q ss_pred EEEEcCC--CCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCC
Q 019653 241 VPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPAS 318 (337)
Q Consensus 241 ~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~ 318 (337)
+||.++. ..+++|+|+.+|+-.. .++...+.++|....++.|.+.++.++=+.+++.+..-.+|||+.|+..-++++
T Consensus 142 ~pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~r 220 (503)
T KOG2550|consen 142 IPVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSR 220 (503)
T ss_pred cccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeeh
Confidence 9999642 3689999999999765 445677889988777999999999999999999999999999999999999999
Q ss_pred CCC
Q 019653 319 NPA 321 (337)
Q Consensus 319 ~~~ 321 (337)
.|-
T Consensus 221 tDl 223 (503)
T KOG2550|consen 221 TDL 223 (503)
T ss_pred hhh
Confidence 665
No 98
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.08 E-value=4.8e-06 Score=80.89 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=87.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC-----CC-cccc------ccccCcee
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VP-VKSV------TIRRIPRV 282 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~-v~~i------~~~~~~~V 282 (337)
++..+..+.++. ++++.|.+.+++.+||++.. ++.+|.....|......++. .. +.+. -..++++.
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 99999999999999999986 66799999999987543321 11 2111 12335679
Q ss_pred CCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcc
Q 019653 283 PETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASK 323 (337)
Q Consensus 283 ~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~ 323 (337)
.++.++.+++.+|.+++.|.+.|||++|...|.++.+|.+.
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS 356 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence 99999999999999999999999999999999999987753
No 99
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=9.2e-06 Score=64.31 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=49.4
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ ++.++++++++. ++++.|.+++.+++||+|++ ++++|+++.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3468999964 567899999998 89999999999999999876 78999999999875
No 100
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.99 E-value=1.3e-06 Score=60.97 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=46.4
Q ss_pred cccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 272 KSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 272 ~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
+++|.++++.+++++++.++++.|++++.+.++|+|++|...|.++.+|-+
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLL 52 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH
Confidence 567778999999999999999999999999999999999999999876643
No 101
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.98 E-value=1.6e-05 Score=76.89 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred EEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhh
Q 019653 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQK 297 (337)
Q Consensus 218 ~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~ 297 (337)
....+.+.. ++++.+...+.....|+|++ ++..|++..+++....... ..+.+.+......+++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 445566776 88999999999999999876 8999999999987654322 34666666777899999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 298 GHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 298 ~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
++.+ .+|+|++|...|.+++...+..
T Consensus 331 ~~~~-~~v~~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 331 AGIK-VPVVDEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred CCCC-EEEECCCCcEEEEEEHHHHHHH
Confidence 9999 8899999999999988665443
No 102
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.97 E-value=1.5e-05 Score=80.04 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=89.7
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCC---CccccccccC
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---PVKSVTIRRI 279 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~v~~i~~~~~ 279 (337)
+.+++++|++ .+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++.....+. .-.++.....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999983 4678899999998 99999999999999999986 899999999999975321111 0112222223
Q ss_pred ceeCCCCCHHHHHHHHhhCCCeEEEEEec-CCCCCCCCCCCCCccccCCCCceee
Q 019653 280 PRVPETLPLYEILNEFQKGHSHMAVVVRQ-YNKNAEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 280 ~~V~~~~~l~~~l~~m~~~~~~~aiVvDe-~G~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
..++++ -.+..+.|.+.+.+.. |+|. +|...+.++.-+.+++.+.+.|+++
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~~~p~~~vi~ 274 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKAKYPDVQIIA 274 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHhhCCCCCEEE
Confidence 333332 2788888999999965 5554 5777777777777777666677664
No 103
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.95 E-value=4.1e-06 Score=83.41 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=76.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCce
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~ 281 (337)
++.+++++|+| ++.++++++++. ++++.|+++++..+||+|++ ++++|+|+.+|+++...+.. -+++|......
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~--~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEA--TEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhh--HHHHHHhcCCC
Confidence 56689999986 677899999998 99999999999999999876 78999999999998654321 24554334434
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEE
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVV 305 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiV 305 (337)
..++..+.+.+..|.+++.+..+|
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v 290 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLV 290 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHH
Confidence 445677899999999888876554
No 104
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=2.1e-05 Score=63.01 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=48.9
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+++|+|.+ ++..+++++++. ++++.|.++++..+||+|++ ++++|+++.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999975 677889999998 89999999999999999876 78999999999863
No 105
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=1.7e-05 Score=62.76 Aligned_cols=58 Identities=29% Similarity=0.450 Sum_probs=50.5
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+...+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 457889998655567899999998 99999999999999999875 78999999999874
No 106
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.91 E-value=2.6e-05 Score=61.38 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=50.8
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+..+.++.++|.+ ++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 4445679999976 456899999998 99999999999999999865 89999999999874
No 107
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.88 E-value=4.6e-05 Score=76.67 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=71.0
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCC---ccccccc
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP---VKSVTIR 277 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~---v~~i~~~ 277 (337)
..+.+|+++|+|..+++++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++........ .+.++.-
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~ 235 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence 45678999999877889999999998 99999999999999999876 7899999999999854221110 1111110
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEE
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVV 305 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiV 305 (337)
.-+..+ ...+-.+.+.+.+.+...|
T Consensus 236 --~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 236 --AGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred --eccChh-hHHHHHHHHHHhCCCeEee
Confidence 112222 2446666677777776544
No 108
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.88 E-value=2.9e-05 Score=78.03 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=82.2
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCC---cccccccc
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP---VKSVTIRR 278 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~---v~~i~~~~ 278 (337)
.+.+++|+|+|..++++++++.++. ++.+.|.+++...+||+|++ ++++|+|+.+|+++.....+.. -+.+. -
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~--V 232 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLL--V 232 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEE--E
Confidence 3568999999877899999999998 99999999999999999876 7899999999999754211100 01111 1
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCCCCceee
Q 019653 279 IPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 279 ~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
-..+..+....+-.+.+.+.+..+..|--.+|........-..++..+.+-|+++
T Consensus 233 gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 233 GAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE
Confidence 1123322233566667777777765433234444433333333344444445543
No 109
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=2.3e-05 Score=62.21 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=49.8
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34578899964 677899999998 99999999999999999876 78999999999874
No 110
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=2.5e-05 Score=62.47 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=51.3
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCC--CcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~--~~ivGiv~~kDll~ 262 (337)
..+.+++++|+.-.++.++++++++. ++++.|.+++++++||+|++. ++++|+|+.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667888997434678999999998 899999999999999998752 58999999999874
No 111
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.83 E-value=2.9e-05 Score=78.20 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=83.1
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCC--CCc----cccc
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPV----KSVT 275 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v----~~i~ 275 (337)
.+.+|+++|++...+.++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++.....+ .+. +.+.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999866688999999998 99999999999999999876 78999999999997543211 111 1111
Q ss_pred cccCceeCCCCCHHHHHHHHhhCCCeEEEEEec-CCCCCCCCCCCCCccccCCCCceee
Q 019653 276 IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ-YNKNAEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 276 ~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe-~G~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
.. ..|-.+..-.+-.+.+.+.+.++. ++|- +|........-..++..+...++|+
T Consensus 239 vg--aavg~~~~~~~r~~~l~~ag~d~i-~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~ 294 (505)
T PLN02274 239 VG--AAIGTRESDKERLEHLVKAGVDVV-VLDSSQGDSIYQLEMIKYIKKTYPELDVIG 294 (505)
T ss_pred EE--EEEcCCccHHHHHHHHHHcCCCEE-EEeCCCCCcHHHHHHHHHHHHhCCCCcEEE
Confidence 11 123333333566677777888876 4554 3333332222333444455555554
No 112
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.81 E-value=2.7e-05 Score=77.85 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=84.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCC-c-cccccccCce
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP-V-KSVTIRRIPR 281 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~-v-~~i~~~~~~~ 281 (337)
.+++++|++ ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++........ . +..+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa-- 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA-- 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCCchhhhhhccchHhh--
Confidence 569999985 788999999998 99999999999999999876 7999999999999854321100 0 01111122
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecCCCC-CCCCCCCCCccccCCCCceee
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQYNKN-AEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~-~~~~~~~~~~~~~~~~~~~~~ 333 (337)
+.-.....+.++.|.+++.+. +++|--.+. ......-...+..|.+.++|+
T Consensus 222 v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~a 273 (479)
T PRK07807 222 VGINGDVAAKARALLEAGVDV-LVVDTAHGHQEKMLEALRAVRALDPGVPIVA 273 (479)
T ss_pred hccChhHHHHHHHHHHhCCCE-EEEeccCCccHHHHHHHHHHHHHCCCCeEEe
Confidence 222334678999999999887 567754333 233333444455566666665
No 113
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.80 E-value=3.8e-05 Score=76.73 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=82.2
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccc--cccCce
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVT--IRRIPR 281 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~--~~~~~~ 281 (337)
.+++++|++ ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... +..+.. .+--.-
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999985 688999999998 99999999999999999876 7899999999999754321 111110 000011
Q ss_pred eCCCCCHHHHHHHHhhCCCeEEEEEecC-CCCCCCCCCCCCccccCCCCceee
Q 019653 282 VPETLPLYEILNEFQKGHSHMAVVVRQY-NKNAEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 282 V~~~~~l~~~l~~m~~~~~~~aiVvDe~-G~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
+.-.....+.++.+.+++.... |+|-- |........-...+..+-+-|+|+
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~ 271 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVL-VIDTAHGHQVKMISAIKAVRALDLGVPIVA 271 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEE-EEeCCCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 3334466788888888888864 55643 323222322333444454556655
No 114
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.74 E-value=2.2e-05 Score=80.11 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=84.8
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---------------
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------- 266 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------- 266 (337)
...+|+++|+. .++.+++++++++ ++.+.|.+++++.+||+|++ ++++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 35789999982 4788999999998 99999999999999999976 899999999999863321
Q ss_pred -----------CCCCccccccccCcee---CCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCcccc
Q 019653 267 -----------DEVPVKSVTIRRIPRV---PETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSA 325 (337)
Q Consensus 267 -----------~~~~v~~i~~~~~~~V---~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~ 325 (337)
+..++++++.+.+..+ |...+...+.+.|++.+....+++.. .-..|+++-...|++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIlsDT~~f~~~ 392 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAILSDTLLFKSP 392 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHHhcCccCC
Confidence 0012344444444433 34555667788888888776666543 2345666665555543
No 115
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.71 E-value=6.6e-05 Score=59.24 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=48.7
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+++++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3468899964 567899999998 99999999999999999875 78999999999863
No 116
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.70 E-value=6.3e-05 Score=59.70 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=50.8
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..+.++.++|.+ +..++++++++. ++++.+.+++.+++||++++ ++++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 345678999975 677899999998 99999999999999999875 79999999999875
No 117
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.67 E-value=4.8e-05 Score=61.55 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=47.6
Q ss_pred cccccccccccCceEEEEe----CCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~----~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+...+..++ +++++. ++++.|.+++.+++||+|++.++++|+|+..|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567999997533333443 578987 89999999999999999875358999999999874
No 118
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=0.00013 Score=57.73 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=47.5
Q ss_pred ccccccccccCceEEEEeCC--CCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~--~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ ++.+++++ +++. ++++.|.+++..++||+|++ ++++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4678899965 56677776 6787 89999999999999999876 88999999999875
No 119
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=0.00011 Score=57.24 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.7
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++++++++. ++++.|.+++..++||++++.++++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999865478999999999874
No 120
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.60 E-value=0.00016 Score=56.14 Aligned_cols=54 Identities=13% Similarity=0.302 Sum_probs=47.1
Q ss_pred ccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 205 ~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+++++|.+ ....+++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47888976 456789999998 89999999999999999876 78999999999874
No 121
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.59 E-value=0.00012 Score=56.91 Aligned_cols=56 Identities=18% Similarity=0.400 Sum_probs=48.6
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+++++|.+ ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568899965 466789999998 89999999999999999876 78999999999874
No 122
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00015 Score=58.15 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=45.1
Q ss_pred cccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhh
Q 019653 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261 (337)
Q Consensus 206 V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll 261 (337)
+.++|.+ ++.++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3456754 677899999998 89999999999999999876 7899999999985
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00013 Score=57.02 Aligned_cols=57 Identities=16% Similarity=0.400 Sum_probs=49.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ +..++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35579999975 577899999998 99999999999999999876 78999999999874
No 124
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.56 E-value=0.00013 Score=58.29 Aligned_cols=58 Identities=26% Similarity=0.535 Sum_probs=50.7
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
....+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 355678999965 677899999998 89999999999999999865 88999999999874
No 125
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00015 Score=56.85 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=48.6
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..++.++|.+ +..+++.++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458899965 577889999998 89999999999999999875 78999999999875
No 126
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00014 Score=56.91 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=48.7
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+++++|.+ ++.++++++++. ++++.+.+++++++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5578999965 677899999998 9999999999999999975 78999999999874
No 127
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.54 E-value=0.031 Score=55.07 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=74.1
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---CCCC-ccccc---
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVP-VKSVT--- 275 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~-v~~i~--- 275 (337)
+.+++++|.| +.++++++++. ++++.|++++....+|+|+. |.++|+|+..|+++..-+ ++.+ -.+.+
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 3457888864 67899999998 99999999999999999986 789999999999974311 1111 11111
Q ss_pred cccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCC
Q 019653 276 IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQ 315 (337)
Q Consensus 276 ~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~ 315 (337)
-...+.++..+++.|+-+.|.-.....-..-++|...+|.
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~ 368 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGF 368 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHH
Confidence 1334678889999999999955321111122345555553
No 128
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.54 E-value=0.00016 Score=56.84 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=49.2
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.++.++|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 44578888964 577899999998 89999999999999999875 79999999999864
No 129
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.54 E-value=0.00014 Score=57.06 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=48.4
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.+ ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899964 566889999998 89999999999999999876 78999999999874
No 130
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.51 E-value=0.00018 Score=56.37 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=49.4
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..++.++|.+ ++.++++++++. ++++.|.+++.+.+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999976 567899999998 89999999999999999861378999999999874
No 131
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00016 Score=56.70 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=48.0
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+++++|.+ ++.+++.++++. ++++.|.+++..++||.++ ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578999964 567899999998 8999999999999999973 78999999999874
No 132
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.50 E-value=0.00015 Score=69.15 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=51.4
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
..+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 677899999998 9999999999999999974 689999999999863
No 133
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00019 Score=57.45 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=49.7
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ ++.++++++++. ++++.+.+.+...+||.+++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 34578888864 688999999998 89999999999999999875 78999999999875
No 134
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.47 E-value=0.00024 Score=55.33 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=46.5
Q ss_pred ccccccccccCceEEEEeC-CCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~-~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+. ...+.. ++++. ++++.+.++++.++||++++ ++++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE--NLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC--ceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 45788999643 344566 89997 89999999999999999875 78999999999874
No 135
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.0002 Score=58.34 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=48.8
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
...++.++|.+ ++..++.++++. ++++.+.+++.+++||.++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34478899964 677899999998 8999999999999999986 78999999999875
No 136
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.46 E-value=0.00022 Score=58.76 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=49.1
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|++ ++..+++++++. ++++.+.++++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999975 566899999998 8999999999999999975 78999999999875
No 137
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.45 E-value=0.00027 Score=55.82 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=47.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC-CCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~-~~~ivGiv~~kDll~ 262 (337)
.+++++|.+ ++..++.++++. ++++.|.+++..++||+|++ .++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788864 677899999998 99999999999999999864 268999999999875
No 138
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.45 E-value=0.00021 Score=56.49 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=47.0
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+..++++|.+....+..++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 345889997644444344499997 89999999999999999876 78999999999864
No 139
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.45 E-value=0.0003 Score=54.94 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=47.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.+ ++.+++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788865 678899999998 89999999999999999875 78999999999874
No 140
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.45 E-value=0.00025 Score=67.29 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=50.6
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
+.+++++|++ +..++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++.
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999976 677899999998 99999999999999999876 689999999999853
No 141
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00026 Score=55.47 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=49.7
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
+.+++++|.+ +...+++++++. ++++.+.+++...+||++++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578899965 577899999998 89999999999999999876 789999999999853
No 142
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00024 Score=56.15 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=48.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 34678899953 678999999998 8999999999999999975 78999999999874
No 143
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00028 Score=55.20 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=48.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ +..+++.++++. ++++.|.+++.+.+||.+ + ++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899965 677899999998 899999999999999998 4 78999999999874
No 144
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00026 Score=56.43 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=49.5
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.++.++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 46678888853 677899999998 99999999999999999875 78999999999874
No 145
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.44 E-value=0.00027 Score=54.99 Aligned_cols=55 Identities=31% Similarity=0.590 Sum_probs=48.1
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468888965 567899999998 89999999999999999876 78999999999874
No 146
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.44 E-value=0.00043 Score=54.57 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=47.4
Q ss_pred ccccccccCceEEEEeCCCCchHHHHHHHHh-cCCcEEEEEcCCCC-cEeEEeEhhhhh
Q 019653 205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPT-NIIGLILVKNLL 261 (337)
Q Consensus 205 ~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~-~~~sr~PV~~~~~~-~ivGiv~~kDll 261 (337)
++.++|++ ++.+++++.++. ++.+.|.+ ++++++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 678899999998 99999999 799999999875 5 999999999974
No 147
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00027 Score=55.37 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=48.0
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4568888864 677899999998 9999999999999999986 78999999999864
No 148
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.43 E-value=0.00029 Score=55.01 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=49.3
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.++.++|.+ ++..+++++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 45678899865 677899999998 89999999999999999876 78999999999874
No 149
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00034 Score=55.90 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=44.7
Q ss_pred ccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 207 ~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+++|.. ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 445542 567899999998 99999999999999999876 78999999999875
No 150
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.42 E-value=0.00018 Score=64.97 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=52.6
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (337)
+.+|+|+|.+ ++++++.|+.+. +++++|..++..|+-|.|.+ ++.+|+++..|++...
T Consensus 233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds~-gkpvGiITrTDIL~~i 290 (294)
T COG2524 233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDSN-GKPVGIITRTDILTRI 290 (294)
T ss_pred cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEccC-CcEEEEEehHHHHHHh
Confidence 4679999975 899999999998 99999999999999999865 8999999999998743
No 151
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.42 E-value=0.00029 Score=55.24 Aligned_cols=56 Identities=25% Similarity=0.517 Sum_probs=48.3
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.++.++|.+ ++..+++++++. ++++.+.+++...+||++++ +++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 44578899965 677889999998 99999999999999999863 8999999999874
No 152
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00027 Score=55.35 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=48.3
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.. ++..++.++++. ++.+.|.+++..++||++++ ++++|+++.+|+.+
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468889864 677899999998 99999999999999999875 78999999999864
No 153
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00021 Score=56.92 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=49.7
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+.++.++|.+ +...++.++++. ++++.+.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 355678889964 677899999998 9999999999999999986 78999999999874
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.38 E-value=0.00031 Score=55.03 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=48.7
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ +...+++++++. ++++.|.+++..++||+++ ++++|+++.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 34578899965 677899999998 8999999999999999974 78999999999875
No 155
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.38 E-value=0.00038 Score=45.16 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=40.2
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
+.++++++++. ++.+.+.+++++.+||++++ ++++|+++.+|+...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35678899998 89999999999999999876 789999999998753
No 156
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.0003 Score=56.06 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=49.4
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
...++.++|.+ +...++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45568888864 577889999998 89999999999999999876 88999999999874
No 157
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00023 Score=58.19 Aligned_cols=57 Identities=25% Similarity=0.393 Sum_probs=50.1
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..+.+++++|.+ ++..+++++++. ++++.|.+++.+++||+| + ++++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356689999965 677899999998 899999999999999998 4 89999999999874
No 158
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.34 E-value=0.00033 Score=55.69 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=49.8
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..+.++.++|.+ ++.+++.+++++ ++++.+.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456678999975 677899999998 8999999999999999975 78999999999874
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00036 Score=53.93 Aligned_cols=54 Identities=33% Similarity=0.445 Sum_probs=47.9
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll 261 (337)
+.++.++|.+ +..+++.++++. ++++.+.+++...+||+++ ++++|+++.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4568899965 677899999998 9999999999999999985 7999999999986
No 160
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.0003 Score=55.42 Aligned_cols=55 Identities=22% Similarity=0.426 Sum_probs=46.5
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ +..++++++++. ++++.|.+++ .+||++++ ++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 46679999976 577889999998 8999998765 59999875 78999999999875
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.31 E-value=0.00051 Score=53.41 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=46.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.+ +..+++.++++. ++++.|.+++.+++||++ + ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888865 467899999998 999999999999999997 3 79999999999874
No 162
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.28 E-value=0.00042 Score=54.22 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=48.3
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ ++..+++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888854 677899999998 9999999999999999985 78999999999875
No 163
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00041 Score=55.36 Aligned_cols=55 Identities=33% Similarity=0.503 Sum_probs=48.2
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+++++|.+ ++..++.++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 358888864 678899999998 89999999999999999875 78999999999875
No 164
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.26 E-value=0.00044 Score=68.93 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=78.4
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCC---Ccccccccc
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---PVKSVTIRR 278 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~v~~i~~~~ 278 (337)
.+.+++++|++ .++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++....... .-..++..-
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~a 217 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRKFPHASKDENGRLIVGA 217 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcccCCcceEeCCCCEEEEE
Confidence 35689999984 4788899999998 99999999999999999986 889999999999975421110 000111111
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCCCCceee
Q 019653 279 IPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYGRSPLIC 333 (337)
Q Consensus 279 ~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~~~~~~~ 333 (337)
-+.....-.+-.+.+.+.+.....|--.+|........=..+++.|.+.|+++
T Consensus 218 --av~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 218 --AVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred --EecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE
Confidence 12222222344446666777765443334433333333233344445566655
No 165
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.00061 Score=52.55 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=41.1
Q ss_pred EEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 216 v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 67889999998 89999999999999999875 78999999999874
No 166
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00064 Score=54.82 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=44.3
Q ss_pred cccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 208 dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.|. .+..++++++++. ++++.|.+++.+++||++++ ++++|+|+..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4453 3677899999998 99999999999999999876 88999999999975
No 167
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.24 E-value=0.00091 Score=52.17 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=46.9
Q ss_pred ccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 205 ~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+++++|.+ ++.+++.+++++ ++++.|.+++...+||++++ ++++|+++.+|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788854 567889999998 89999999999999999876 89999999999864
No 168
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00041 Score=54.48 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=48.2
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ +...+++++++. ++++.+.+++...+||+++ ++++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 567899999998 9999999999999999985 78999999999875
No 169
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00085 Score=52.55 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=48.1
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.+++++|.+ ++..++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468888864 577899999998 89999999999999999876 78999999999874
No 170
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.18 E-value=0.00074 Score=52.70 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=47.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.++.++|.+ +...+++++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 467888853 677899999998 89999999999999999876 78999999999874
No 171
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.15 E-value=0.00091 Score=65.14 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=88.5
Q ss_pred ccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC--C--------CCCcccc---ccc
Q 019653 211 TPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--D--------EVPVKSV---TIR 277 (337)
Q Consensus 211 tpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~--------~~~v~~i---~~~ 277 (337)
+++...+++.+..++- ++...+.++++.|+||.|.+.+++..+++.+-+++.... + ..++.++ ...
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 4444547788888876 788889999999999999555799999999999864211 1 1122222 134
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
.+..+.+++++.++++.|..++..-++|||++|+..|..+++|.-..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l 284 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHL 284 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhh
Confidence 57789999999999999999999999999999999999999887433
No 172
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.10 E-value=0.0009 Score=68.77 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCC-CcEeEEeEhhhhhhcC
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTIH 264 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~-~~ivGiv~~kDll~~~ 264 (337)
+.+++|+|++ +..++++|++++ ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 567899999998 999999999999999998753 4799999999998753
No 173
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.09 E-value=0.00082 Score=52.54 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.6
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..+.++|. ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 34666663 357789999998 99999999999999999875 78999999999864
No 174
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.00089 Score=54.00 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=48.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcC-CCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~-~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|++ ++.++++++++. ++++.|.++++..+||+++ +.++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899975 677899999998 8999999999999999953 3478999999999874
No 175
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.05 E-value=0.0012 Score=61.03 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=54.0
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
.+.+-+++.||++ .+.++.++++.. +.+-.+.+.|+..+||+|++ ++++|||+..|++..
T Consensus 311 ~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaa 370 (382)
T COG3448 311 FLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAA 370 (382)
T ss_pred ccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHH
Confidence 4567899999996 688999999997 89999999999999999987 999999999999864
No 176
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.98 E-value=0.00034 Score=56.70 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=46.4
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHH---------hcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLIL---------EKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~---------~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
.+.+++++|++ ++.++++++++. ++.+.+. +++...+||.+++ ++++|+|+.+|+++.
T Consensus 57 ~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYK--QFKRVNKNDTLG-KLSRILETDAFLLVFFEQISSAAIGKEKQ-EKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhc--cceecCCCCCHH-HHHhhcccCCceEEEeccccccccccccc-cceEEEEehhHhhhh
Confidence 45689999985 678899999998 8888543 3356777888765 899999999999863
No 177
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0012 Score=54.73 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=49.0
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
...++.++|.+ +..+++.++++. ++++.+.+++++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899965 677899999998 8999999999999999975 78999999999874
No 178
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.96 E-value=0.0015 Score=51.14 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=43.1
Q ss_pred ccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 209 IMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7764 677899999998 9999999999999999953 78999999999875
No 179
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.95 E-value=0.0011 Score=61.09 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=44.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeE
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~ 256 (337)
.+.+++++|.+ ++.++++++++. ++++.|.+++..++||+|++ ++++|+||
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 35679999975 577899999998 99999999999999999876 78999986
No 180
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.90 E-value=0.0024 Score=60.11 Aligned_cols=87 Identities=13% Similarity=0.203 Sum_probs=66.3
Q ss_pred ccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---CCC------Cccccc
Q 019653 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEV------PVKSVT 275 (337)
Q Consensus 205 ~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~------~v~~i~ 275 (337)
+++++|.| +.++++++++. ++++.|++++....||+|+. +.++|+|+..|+++..-+ ++. .+...
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 47788864 44799999998 99999999999999999976 789999999999974321 111 12221
Q ss_pred cccCceeCCCCCHHHHHHHHhh
Q 019653 276 IRRIPRVPETLPLYEILNEFQK 297 (337)
Q Consensus 276 ~~~~~~V~~~~~l~~~l~~m~~ 297 (337)
-...+.|+..+++.++.+.+.-
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~~ 229 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFGT 229 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 2234679999999999998843
No 181
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.0014 Score=51.81 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=46.9
Q ss_pred cccccccccccCceEEEEeCCCCchHHHHHHHHhcCC---cEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH---SRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 202 ~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~---sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
.+.+++++|.+ +...+++++++. ++++.|.+++. ...||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 677899999998 89999998875 345788765 89999999999874
No 182
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.72 E-value=0.0031 Score=62.93 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=59.6
Q ss_pred HHHHHHhhhc---ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC
Q 019653 191 ETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (337)
Q Consensus 191 E~~~l~~~l~---l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (337)
++++...++. -...+|+++||. ++.+++.++.+= ++.-.|.+++..++||+++ ++++|+|+..|++....
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 5667777764 344689999995 899999999997 8999999999999999975 79999999999997653
No 183
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.67 E-value=0.00093 Score=53.32 Aligned_cols=53 Identities=21% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 269 ~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
.++.++|.+++.++++++++.++++.|++++.+.++|+|+.|...|+++.++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl 110 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDL 110 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHh
Confidence 45788888888999999999999999999999999999998999999987654
No 184
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.65 E-value=0.0034 Score=48.63 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=45.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
..+.++|.+ +..+++.++++. ++++.+.+++...+||.++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 356777864 566789999998 9999999999999999984 68999999999874
No 185
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.60 E-value=0.0063 Score=46.65 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=46.0
Q ss_pred cccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 206 V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++|.+ +...++.++++. ++.+.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677754 677889999998 99999999999999999886 89999999999874
No 186
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.59 E-value=0.003 Score=48.99 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=43.4
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
+.++.++|.+ +..+++.++++. ++.+.+.+ . ...||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568888864 567899999997 88888887 3 347888876 78999999999874
No 187
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0065 Score=61.35 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=83.1
Q ss_pred cccccccCc---eEEEEeCC-CCchHHHHHHHHhcCCcEEEEE-cCCCCcEeEEeEhhhhhhcC------CC--------
Q 019653 206 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLILVKNLLTIH------PE-------- 266 (337)
Q Consensus 206 V~dIMtpr~---~v~~v~~~-~~l~~~~~~~l~~~~~sr~PV~-~~~~~~ivGiv~~kDll~~~------~~-------- 266 (337)
..++|.|+. ....++.+ ++++ +....+.++.|+.+||+ +++.++.+|++..+|+.... ++
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 444554432 34455554 8898 89999999999999988 45668899999999986311 00
Q ss_pred -------------CCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 267 -------------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 267 -------------~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
.....++++--.+.+|-..+|...+++.|++-+..... ++++|...|.+|-.|-+
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~-v~~~G~l~Giitkkd~l 691 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQIL-VTKNGILLGIITKKDCL 691 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEE-EccCCeeEeeeehHHHH
Confidence 01234565545566899999999999999998888775 46789999998866543
No 188
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.18 E-value=0.0055 Score=57.58 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=86.2
Q ss_pred HHHHHHhhhcccccccccccccCceEEEEeCC-CCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCCCCC
Q 019653 191 ETTIIAGALELTEKTASDAMTPIAETFAIDIN-AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV 269 (337)
Q Consensus 191 E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~-~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~ 269 (337)
-++.++++-...=.++++||.+ .+......+ ...+ .+.+.+...+-+.+-+++. .++.+|+|+..+....
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------ 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------ 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc------
Confidence 3556667767777899999985 232222222 2333 5677777777777777774 3679999998776543
Q ss_pred CccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 270 PVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 270 ~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
.+..++..++.++++.+.+....++..+++ |+||+|...|.+.+...
T Consensus 332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde~~r~vG~i~~~~v 378 (386)
T COG4175 332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDEDGRYVGIISRGEL 378 (386)
T ss_pred ----cccccccccCccchHHHHHHHHhcCCCcee-EEcCCCcEEEEecHHHH
Confidence 235677789999999999999999999988 78999999999887554
No 189
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.14 E-value=0.0016 Score=42.01 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=38.2
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
++.++++++++.++++.|++++.+.++|+|++|...|.++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l 44 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDI 44 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHH
Confidence 35678999999999999999999999999988888898887654
No 190
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.09 E-value=0.0052 Score=59.94 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=74.5
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC-CCCCcccccccc
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-DEVPVKSVTIRR 278 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-~~~~v~~i~~~~ 278 (337)
...-++++++|.|..... ..+.+ . +++ +++.+.+.|+|+ |+++..+....... +...+.+ +.+.
T Consensus 270 ~~~~l~a~~~m~~~~~~~--~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (382)
T TIGR03415 270 PLNVLTARSLMRPLTDLE--HVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAA 334 (382)
T ss_pred cccceeHHHHhccccccc--ccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchhh-hccc
Confidence 455568899997643322 22323 2 333 378888888864 88887776543221 2234666 4678
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccc
Q 019653 279 IPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKS 324 (337)
Q Consensus 279 ~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~ 324 (337)
...+++++++.|++..+.+.+.+++ |+|+ |...|.+++...+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~-~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGAIL-LVEN-GRIVGVIGDDNIYHA 378 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCCeE-EeeC-CeEEEEEeHHHHHHH
Confidence 8899999999999999999888866 5676 999999887665443
No 191
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.01 Score=58.86 Aligned_cols=60 Identities=18% Similarity=0.359 Sum_probs=53.8
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
.-++..++++|.+ ++++++++++.+ ++.+.+.+++....||+|++ ++.+|+++..|++..
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidv 251 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDV 251 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHH
Confidence 5567789999986 488999999987 99999999999999999986 899999999999864
No 192
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=95.29 E-value=0.011 Score=50.06 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCC
Q 019653 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASN 319 (337)
Q Consensus 269 ~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~ 319 (337)
.+.+.+|.+|+.++.+++++.++++.|++++....||+++ |+++|..|-+
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~ 114 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITEN 114 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHH
Confidence 3456778899999999999999999999999999999988 8888887753
No 193
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.90 E-value=0.039 Score=52.34 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=52.6
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
..++.+...+||. +..++.+.+++. .+.+.|.-.++..+||++++ .+.+|+|+.+|+++.
T Consensus 245 ~~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~ 304 (432)
T COG4109 245 KKPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKS 304 (432)
T ss_pred CCCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHH
Confidence 3456788899985 567899999998 89999999999999999987 899999999999974
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.097 Score=50.65 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=70.3
Q ss_pred cccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---CCCCcccccc
Q 019653 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTI 276 (337)
Q Consensus 200 ~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~i~~ 276 (337)
.-....+.|+|+++. ++.+.+.+++ ++-+.+.++.--++||+|++ |+.+-++...||.+.... ...+-++++.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcCCCccccCcccceee
Confidence 335567999999976 7889999998 89999999999999999987 999999999999874311 1111233333
Q ss_pred ccCceeCCCCCHHHHHHHHhhCCCeEEEEEecC
Q 019653 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQY 309 (337)
Q Consensus 277 ~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~ 309 (337)
....--.++. .+-++.+.+.+.... |.|-.
T Consensus 243 gAaiGTre~d--K~rl~ll~~aGvdvv-iLDSS 272 (503)
T KOG2550|consen 243 GAAIGTRDDD--KERLDLLVQAGVDVV-ILDSS 272 (503)
T ss_pred eeccccccch--hHHHHHhhhcCCcEE-EEecC
Confidence 2222222222 445666667777755 55543
No 195
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=94.75 E-value=0.019 Score=47.27 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=39.2
Q ss_pred cCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 278 ~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
.+..+++++++.++++.|.+++.+.++|+|+.|+..|+++..|.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl 45 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDI 45 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence 45679999999999999999998899999999999999997663
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.59 E-value=0.054 Score=52.53 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=48.8
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (337)
..+.+.|.+ +..++++++++. +++..+.++++. +||+|++ ++++|+|+..+++...
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence 368888864 667899999998 999999999999 9999876 8999999999998754
No 197
>PRK11573 hypothetical protein; Provisional
Probab=94.03 E-value=0.18 Score=49.72 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=59.8
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC-----CCCC----CCccccccccCceeCCC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-----PEDE----VPVKSVTIRRIPRVPET 285 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-----~~~~----~~v~~i~~~~~~~V~~~ 285 (337)
++..++.+.++. ++++.|++++..-.-|+|+. |...|+|+..|+++.. .+.+ ..+... -...+.++..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 467899999998 99999999988888888886 8899999999999732 1111 111111 2235679999
Q ss_pred CCHHHHHHHHh
Q 019653 286 LPLYEILNEFQ 296 (337)
Q Consensus 286 ~~l~~~l~~m~ 296 (337)
++++|+-+.+.
T Consensus 340 ~~l~d~~~~l~ 350 (413)
T PRK11573 340 ANVREINKAFN 350 (413)
T ss_pred eEHHHHHHHhC
Confidence 99999999884
No 198
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=93.96 E-value=0.031 Score=55.62 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=48.1
Q ss_pred CCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCc
Q 019653 268 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPAS 322 (337)
Q Consensus 268 ~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~ 322 (337)
..+++++|.+++..+++++++.++++.|.+++...++|+|++|...|+++..|..
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~ 388 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL 388 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 3568888888899999999999999999998888899999989999999976643
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.39 E-value=0.21 Score=49.13 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=47.9
Q ss_pred ccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC
Q 019653 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (337)
Q Consensus 203 ~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (337)
+.+++++|.+ +..+++.++++. +++..+.++.+. +||+|++ ++++|+|+..+++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRAL 392 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHH
Confidence 3467788754 567899999998 899999988776 9999876 8999999999998754
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=88.88 E-value=2.4 Score=42.06 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=59.9
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCC-----C-CC---CCccccccccCceeCCC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----E-DE---VPVKSVTIRRIPRVPET 285 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~-~~---~~v~~i~~~~~~~V~~~ 285 (337)
++..++++.++. +++++|++++-.---|+|+. |.+.|+|+..|+++..- + ++ ..+.+. ..+-+.++..
T Consensus 280 ~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~-~~~~~~v~G~ 356 (429)
T COG1253 280 PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR-DDDGWLVDGR 356 (429)
T ss_pred CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCcCcccccccccceEe-cCCcEEEecc
Confidence 567899999998 99999998887777888876 88999999999997421 1 11 112221 1223678999
Q ss_pred CCHHHHHHHHhhC
Q 019653 286 LPLYEILNEFQKG 298 (337)
Q Consensus 286 ~~l~~~l~~m~~~ 298 (337)
+++.|+-+.+--.
T Consensus 357 ~~l~e~~~~l~~~ 369 (429)
T COG1253 357 VPLEELEELLGID 369 (429)
T ss_pred ccHHHHHHHhCCC
Confidence 9999998887543
No 201
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=84.74 E-value=4.7 Score=38.99 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=60.6
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC-----CCCCCCccccc--c
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-----PEDEVPVKSVT--I 276 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-----~~~~~~v~~i~--~ 276 (337)
.+-.+++.--.++..++.++++. +-+..++++.-.---|+|+- |++.|+|+..|+++-. ...+....++. .
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~ 342 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQS 342 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHHhccccccCcccchhhcccC
Confidence 44556665556788999999998 77888887765455667765 8999999999999632 11122222321 1
Q ss_pred ccCceeCCCCCHHHHHHHHhhC
Q 019653 277 RRIPRVPETLPLYEILNEFQKG 298 (337)
Q Consensus 277 ~~~~~V~~~~~l~~~l~~m~~~ 298 (337)
..-..+..+.++.|+=+.|-.+
T Consensus 343 dgs~iidGs~~iRdlNr~l~W~ 364 (423)
T COG4536 343 DGSFIIDGSANVRDLNRALDWN 364 (423)
T ss_pred CCcEEEeCCCcHHHHHHhcCCC
Confidence 1123577777777776666443
No 202
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=77.69 E-value=8.2 Score=35.11 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=66.8
Q ss_pred ccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---------CCCCccccc
Q 019653 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKSVT 275 (337)
Q Consensus 205 ~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~i~ 275 (337)
.++++..| .+.++..-.++ ..++.++.+++..--|+|+- |.+-|.|+..|++...-+ ....++.+
T Consensus 134 ~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l- 207 (293)
T COG4535 134 DIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL- 207 (293)
T ss_pred cHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh-
Confidence 45666654 56788999998 79999998888888899875 889999999999974211 12345554
Q ss_pred cccCceeCCCCCHHHHHHHHhhC
Q 019653 276 IRRIPRVPETLPLYEILNEFQKG 298 (337)
Q Consensus 276 ~~~~~~V~~~~~l~~~l~~m~~~ 298 (337)
.+..+.|..-+++.+-=+.|..+
T Consensus 208 s~~~~~VrALT~IedFNe~F~t~ 230 (293)
T COG4535 208 SRHTWRVRALTEIEDFNEAFGTH 230 (293)
T ss_pred cCCceEEEecccHHHHHHHhcCC
Confidence 56777899999999888877544
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=75.38 E-value=2.5 Score=44.24 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=48.9
Q ss_pred ccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC-CCcEeEEeEhhhhhhc
Q 019653 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLTI 263 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~-~~~ivGiv~~kDll~~ 263 (337)
.-.+.|+|+|+. ++.++..+.|.. |+.+.+..+....+|++|+. ..-++|.|..+.|..+
T Consensus 585 ~h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 585 VHTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eeEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 345679999985 899999999998 88877777669999999863 2458999999998754
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=72.23 E-value=4.7 Score=39.45 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=42.3
Q ss_pred cccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC
Q 019653 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (337)
Q Consensus 204 ~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (337)
.++.+ + .++..++++++++. +++..+.++++. +||+|+ ++++|+|+..+++...
T Consensus 326 ~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 326 QEVES-L--EAAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cchhh-h--cccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 34555 3 23577889999998 999988888765 788874 8999999999998753
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=68.33 E-value=14 Score=34.24 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=65.7
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcCCC---------C--------CCCccccccc
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------D--------EVPVKSVTIR 277 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~--------~~~v~~i~~~ 277 (337)
.++.|.-|. + |++++- +|+-|.++ ++++-+=+..+++..+.+ + ..++.+.+..
T Consensus 188 TivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~ 257 (309)
T COG1125 188 TIVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRR 257 (309)
T ss_pred EEEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcc
Confidence 355565443 4 676543 68888874 789999998888764431 1 0122333222
Q ss_pred cC----ceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCC
Q 019653 278 RI----PRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPA 321 (337)
Q Consensus 278 ~~----~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~ 321 (337)
.. -.++....-.+++..+.+.+...++|+|++|...|.+++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l 305 (309)
T COG1125 258 GEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADL 305 (309)
T ss_pred cccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHH
Confidence 11 135666677789999999999999999999999999987654
No 206
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=67.27 E-value=7.4 Score=40.12 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=44.7
Q ss_pred ccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 207 ~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
...|.| ...+++.++++. .+...++.-|...+-|++.. ++++|+++.+|+..
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLAR 744 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhh
Confidence 455665 566889999998 89999999999999999875 78899999999985
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=61.84 E-value=11 Score=34.87 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=40.7
Q ss_pred ccccccccccccCceEE--EEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 201 LTEKTASDAMTPIAETF--AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 201 l~~~~V~dIMtpr~~v~--~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
++..++.+.|.+..... .+.....-. +++..+...+.+.+||+|++ ++++|.++..+++.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 45667788876533210 111222223 56666778888999999987 99999999999874
No 208
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=59.57 E-value=12 Score=27.44 Aligned_cols=57 Identities=23% Similarity=0.480 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcEeEEeEhhhhhhcCCCCCCCccccccccCceeCCCCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCC
Q 019653 240 RVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASN 319 (337)
Q Consensus 240 r~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~i~~~~~~~V~~~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~ 319 (337)
..||++++ ++++|++... + .+. .+.+.++.++-.+...+.++|++|..+-++...
T Consensus 18 s~pi~~~~-g~~~Gvv~~d-i---------~l~--------------~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp~~~ 72 (81)
T PF02743_consen 18 SVPIYDDD-GKIIGVVGID-I---------SLD--------------QLSEIISNIKFGNNGYAFIVDKNGTIIAHPDKD 72 (81)
T ss_dssp EEEEEETT-TEEEEEEEEE-E---------EHH--------------HHHHHHTTSBBTTTBEEEEEETTSBBCE-SSGG
T ss_pred EEEEECCC-CCEEEEEEEE-e---------ccc--------------eeeeEEEeeEECCCEEEEEEECCCCEEEeCChH
Confidence 45999855 8999998641 1 111 235555556667777888999999888776654
Q ss_pred CC
Q 019653 320 PA 321 (337)
Q Consensus 320 ~~ 321 (337)
..
T Consensus 73 ~i 74 (81)
T PF02743_consen 73 LI 74 (81)
T ss_dssp CT
T ss_pred Hh
Confidence 43
No 209
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=59.50 E-value=12 Score=35.86 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=38.2
Q ss_pred eEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhcC
Q 019653 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (337)
Q Consensus 215 ~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (337)
++.+++.|+++. +.+..+.+.+ .-+||+|++ ++++|++...+++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHH
Confidence 566788899987 7777776655 478999987 9999999999998764
No 210
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=58.33 E-value=11 Score=38.16 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhh
Q 019653 228 ELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (337)
Q Consensus 228 ~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (337)
...+.+.+.|-+-++|+++ +++.|++++||+.+
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 4566677888899999975 79999999999985
No 211
>PF14044 NETI: NETI protein
Probab=57.99 E-value=11 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=24.4
Q ss_pred EEEeCCCCchHHHHHHHHhcCCcEE-----EEEcCC
Q 019653 217 FAIDINAKLDKELMNLILEKGHSRV-----PVYYEE 247 (337)
Q Consensus 217 ~~v~~~~~l~~~~~~~l~~~~~sr~-----PV~~~~ 247 (337)
+.|..+.|++ +.++.|.+.||.-+ ||+.+.
T Consensus 2 FeV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~e~ 36 (57)
T PF14044_consen 2 FEVEENETIS-DCLARMKKEGYMPVRRIEKPIFKEV 36 (57)
T ss_pred eeccCCCcHH-HHHHHHHHcCCCceeeccccceEEe
Confidence 3567899998 99999999999754 888653
No 212
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=47.53 E-value=65 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=28.6
Q ss_pred HHHHHHhhhchhhHHHHhhhHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019653 106 TLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (337)
Q Consensus 106 ~l~lifgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~v~~l~~~~~~l~ 157 (337)
+++++|.-|+-|+ ++.+++.-+|+|++++-+++-++-.
T Consensus 197 ~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 197 LIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666665 5678889999999999999888743
No 213
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=41.50 E-value=42 Score=34.82 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.2
Q ss_pred cccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhhhc
Q 019653 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (337)
Q Consensus 206 V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (337)
.+++|-+ ..+++....+.+ .+.+++++-|.+..-|-++ ++..|+|+.||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 4566643 456777788887 8899999999988888653 899999999999875
No 214
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=38.26 E-value=28 Score=21.79 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019653 19 IVFLVMFAGLMSGLTLG 35 (337)
Q Consensus 19 i~~ll~lsa~fs~~E~A 35 (337)
+++|+..++.|.+.+.|
T Consensus 6 ~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 6 FLICLAAAAVFTAAGVA 22 (37)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 45688999999998874
No 215
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=35.82 E-value=2.6e+02 Score=23.40 Aligned_cols=7 Identities=29% Similarity=0.078 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 019653 27 GLMSGLT 33 (337)
Q Consensus 27 a~fs~~E 33 (337)
|+++..+
T Consensus 22 Al~~l~~ 28 (183)
T PF01595_consen 22 ALFSLSR 28 (183)
T ss_pred HHHhcCH
Confidence 3443333
No 216
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=35.63 E-value=62 Score=20.33 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019653 12 FIIHIVVIVFLVMFAGLM 29 (337)
Q Consensus 12 ~~~~~~~i~~ll~lsa~f 29 (337)
+|..+++.++.+++|..|
T Consensus 18 Y~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 566666666666666655
No 217
>CHL00038 psbL photosystem II protein L
Probab=34.45 E-value=59 Score=20.49 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019653 12 FIIHIVVIVFLVMFAGLM 29 (337)
Q Consensus 12 ~~~~~~~i~~ll~lsa~f 29 (337)
+|-.+++.++.+++|.+|
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466666666666666555
No 218
>PF15284 PAGK: Phage-encoded virulence factor
Probab=33.42 E-value=55 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019653 16 IVVIVFLVMFAGLMSGLTLGLMS 38 (337)
Q Consensus 16 ~~~i~~ll~lsa~fs~~E~Al~s 38 (337)
+++.+++++.++.||++-+|-=+
T Consensus 7 ifL~l~~~LsA~~FSasamAa~~ 29 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAADS 29 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhh
Confidence 45566677888999998777444
No 219
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.86 E-value=61 Score=25.09 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 019653 21 FLVMFAGLMSGLT 33 (337)
Q Consensus 21 ~ll~lsa~fs~~E 33 (337)
+++++|.=.|+.|
T Consensus 15 ~lLlisSevaa~~ 27 (95)
T PF07172_consen 15 ALLLISSEVAARE 27 (95)
T ss_pred HHHHHHhhhhhHH
Confidence 3333343333333
No 220
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=28.42 E-value=74 Score=20.13 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019653 12 FIIHIVVIVFLVMFAGLM 29 (337)
Q Consensus 12 ~~~~~~~i~~ll~lsa~f 29 (337)
+|-.+++.++.+++|.+|
T Consensus 20 y~GlLlifvl~vLFssYf 37 (39)
T PRK00753 20 YLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 465665555666666655
No 221
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=2.6e+02 Score=20.39 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Q 019653 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGT 52 (337)
Q Consensus 11 ~~~~~~~~i~~ll~lsa~fs~~E~Al~s~~~~~l~~l~~~g~ 52 (337)
+.|+.+++++++ ++.|++-| ++-.+|.--+++.++.+
T Consensus 2 ~l~lail~ivl~-ll~G~~~G----~fiark~~~k~lk~NPp 38 (71)
T COG3763 2 SLWLAILLIVLA-LLAGLIGG----FFIARKQMKKQLKDNPP 38 (71)
T ss_pred hhHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHhhCCC
Confidence 456665433333 33444444 55556666666665544
No 222
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.90 E-value=73 Score=25.07 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=13.0
Q ss_pred EEEEEcCCCCcEeEEeEhh
Q 019653 240 RVPVYYEEPTNIIGLILVK 258 (337)
Q Consensus 240 r~PV~~~~~~~ivGiv~~k 258 (337)
..||+|.+ ++++|+|...
T Consensus 93 ~~PV~d~~-g~viG~V~VG 110 (116)
T PF14827_consen 93 FAPVYDSD-GKVIGVVSVG 110 (116)
T ss_dssp EEEEE-TT-S-EEEEEEEE
T ss_pred EEeeECCC-CcEEEEEEEE
Confidence 56999766 8999999763
No 223
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.31 E-value=99 Score=21.62 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=23.4
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEe
Q 019653 279 IPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (337)
Q Consensus 279 ~~~V~~~~~l~~~l~~m~~~~~~~aiVvD 307 (337)
...+++.+++.++++.+.-...++++.+|
T Consensus 8 ~~~~~~~~tv~~ll~~l~~~~~~i~V~vN 36 (65)
T cd00565 8 PREVEEGATLAELLEELGLDPRGVAVALN 36 (65)
T ss_pred EEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 34578889999999999877777877765
No 224
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=23.24 E-value=61 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=28.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEecCCCCC--C--CCCCCCCccccCCCCceeeee
Q 019653 287 PLYEILNEFQKGHSHMAVVVRQYNKNA--E--QPASNPASKSAYGRSPLICCR 335 (337)
Q Consensus 287 ~l~~~l~~m~~~~~~~aiVvDe~G~~~--~--~~~~~~~~~~~~~~~~~~~~~ 335 (337)
.+..+++.- .+...|++|+|+|++. | .+...++ +-.-.-.=-|||-
T Consensus 17 lL~~lL~~~--~g~kiAVIVNEfGEvgID~~~~l~~~~e-~~~El~nGCICCT 66 (323)
T COG0523 17 LLNHLLANR--DGKKIAVIVNEFGEVGIDGGALLSDTGE-EVVELTNGCICCT 66 (323)
T ss_pred HHHHHHhcc--CCCcEEEEEecCccccccCCCccccCCc-cEEEeCCceEEEe
Confidence 344444442 3678999999999654 3 4444444 3334445579996
No 225
>PHA00728 hypothetical protein
Probab=22.05 E-value=57 Score=26.36 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhhcccccccccccccCceEEEEeCCCCchHHHHHHHHhcCCcEEEEEcCC
Q 019653 188 THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE 247 (337)
Q Consensus 188 ~~~E~~~l~~~l~l~~~~V~dIMtpr~~v~~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~ 247 (337)
++++.+-++|-....++.+.+...|++.+++++-++- + -++....+.|+|.|=+.
T Consensus 35 ~~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnqi-s----LILtAfEfarLP~YFgE 89 (151)
T PHA00728 35 EDEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQI-S----LILTAFEFARLPAYFGE 89 (151)
T ss_pred hhhhHHHhcCCceehhHHHHHhcCCccceEEecCCch-h----hHHHHHHHhhchhhhCC
Confidence 4566777899999999999999999999999986532 2 23445678899998653
No 226
>PRK10329 glutaredoxin-like protein; Provisional
Probab=21.50 E-value=1.3e+02 Score=22.24 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=24.1
Q ss_pred EEeCCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEhhhhh
Q 019653 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261 (337)
Q Consensus 218 ~v~~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~kDll 261 (337)
.++.+.. . ++.+.+...|+..+||+--+.+.+.| .....+.
T Consensus 30 ~idi~~~-~-~~~~~~~~~g~~~vPvv~i~~~~~~G-f~~~~l~ 70 (81)
T PRK10329 30 MINVDRV-P-EAAETLRAQGFRQLPVVIAGDLSWSG-FRPDMIN 70 (81)
T ss_pred EEECCCC-H-HHHHHHHHcCCCCcCEEEECCEEEec-CCHHHHH
Confidence 4455544 2 56667777899999998644233444 3444443
No 227
>PRK03972 ribosomal biogenesis protein; Validated
Probab=20.93 E-value=1.3e+02 Score=26.78 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCCCchHHHHHHHHhcCCcEEEEEcCCCCcEeEEeEh
Q 019653 221 INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (337)
Q Consensus 221 ~~~~l~~~~~~~l~~~~~sr~PV~~~~~~~ivGiv~~ 257 (337)
-..+++ ++.+...+.+++.+.|++++.+++-|++..
T Consensus 34 Gk~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~ 69 (208)
T PRK03972 34 GKKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFI 69 (208)
T ss_pred CCccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEE
Confidence 356777 899999999999999999877777776543
No 228
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=20.86 E-value=1.2e+02 Score=21.40 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=22.7
Q ss_pred CceeCCCCCHHHHHHHHhhCCCeEEEEEe
Q 019653 279 IPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (337)
Q Consensus 279 ~~~V~~~~~l~~~l~~m~~~~~~~aiVvD 307 (337)
...+++++++.++++.+......+++.+|
T Consensus 9 ~~~~~~~~tl~~ll~~l~~~~~~vaVavN 37 (66)
T PRK08053 9 PMQCAAGQTVHELLEQLNQLQPGAALAIN 37 (66)
T ss_pred EEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 34567888999999998877777777776
No 229
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=20.77 E-value=54 Score=26.49 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEecCCCCCCCCCCCCCccccCCCCce
Q 019653 285 TLPLYEILNEFQKGHSHMAVVVRQYNKNAEQPASNPASKSAYGRSPL 331 (337)
Q Consensus 285 ~~~l~~~l~~m~~~~~~~aiVvDe~G~~~~~~~~~~~~~~~~~~~~~ 331 (337)
..++.|+....++...++.+||-...-..+.-...|. |=++|-||-
T Consensus 34 G~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~ADy-NVaVgnQPH 79 (120)
T PF01994_consen 34 GENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELADY-NVAVGNQPH 79 (120)
T ss_dssp SEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSSE-EEESSSS--
T ss_pred CCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCCc-ceeeCCCCh
Confidence 3478999999998888999999765566666677777 889999984
Done!