Query 019654
Match_columns 337
No_of_seqs 218 out of 1423
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 4.4E-46 9.5E-51 338.6 32.4 299 36-335 17-325 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 3.8E-38 8.3E-43 282.8 23.8 222 101-323 11-244 (244)
3 PLN00411 nodulin MtN21 family 100.0 5.3E-26 1.1E-30 215.1 31.7 286 35-334 14-330 (358)
4 PRK15430 putative chlorampheni 99.9 6E-25 1.3E-29 204.0 29.9 275 32-329 6-282 (296)
5 PF06027 DUF914: Eukaryotic pr 99.9 4.3E-25 9.2E-30 205.3 28.5 280 42-335 21-308 (334)
6 PRK11453 O-acetylserine/cystei 99.9 4.3E-24 9.4E-29 198.5 33.6 276 36-333 6-288 (299)
7 PRK11272 putative DMT superfam 99.9 4.6E-24 1E-28 197.6 31.1 270 37-334 11-287 (292)
8 PRK11689 aromatic amino acid e 99.9 2.2E-24 4.8E-29 200.1 28.6 269 34-331 4-286 (295)
9 PTZ00343 triose or hexose phos 99.9 2.1E-22 4.5E-27 190.9 34.6 277 44-334 59-350 (350)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 1.7E-23 3.7E-28 194.7 26.5 277 44-336 12-297 (302)
11 TIGR00950 2A78 Carboxylate/Ami 99.9 9.4E-23 2E-27 185.3 28.9 257 46-327 1-259 (260)
12 PF08449 UAA: UAA transporter 99.9 2.1E-22 4.5E-27 187.5 30.8 262 65-336 31-301 (303)
13 PRK10532 threonine and homoser 99.9 6E-22 1.3E-26 183.6 31.6 268 35-336 13-285 (293)
14 TIGR00803 nst UDP-galactose tr 99.9 2.7E-22 5.8E-27 178.6 17.8 219 110-330 2-222 (222)
15 KOG3912 Predicted integral mem 99.9 9E-21 2E-25 166.7 26.1 290 37-332 6-334 (372)
16 TIGR00688 rarD rarD protein. T 99.9 1.1E-20 2.5E-25 171.6 26.2 249 35-307 3-255 (256)
17 TIGR03340 phn_DUF6 phosphonate 99.9 4.5E-20 9.7E-25 170.0 24.1 271 36-329 3-280 (281)
18 COG0697 RhaT Permeases of the 99.9 8.3E-19 1.8E-23 161.0 32.4 281 36-335 9-290 (292)
19 KOG1581 UDP-galactose transpor 99.8 9.5E-19 2.1E-23 156.1 21.1 256 65-331 50-312 (327)
20 KOG4510 Permease of the drug/m 99.7 1.2E-18 2.6E-23 152.5 4.6 265 42-330 46-323 (346)
21 KOG1580 UDP-galactose transpor 99.7 6.1E-17 1.3E-21 139.4 14.1 218 108-329 86-310 (337)
22 TIGR00776 RhaT RhaT L-rhamnose 99.7 6.1E-14 1.3E-18 129.8 28.4 269 36-332 3-288 (290)
23 COG2962 RarD Predicted permeas 99.6 3.8E-13 8.2E-18 120.3 27.3 273 34-333 7-284 (293)
24 KOG1441 Glucose-6-phosphate/ph 99.5 3.9E-14 8.4E-19 130.6 11.5 223 106-335 82-310 (316)
25 KOG1443 Predicted integral mem 99.5 7.2E-13 1.6E-17 118.6 18.4 288 37-333 15-316 (349)
26 KOG2766 Predicted membrane pro 99.5 9.8E-15 2.1E-19 127.3 1.2 246 66-332 48-299 (336)
27 KOG1583 UDP-N-acetylglucosamin 99.4 8.8E-14 1.9E-18 122.7 5.8 222 109-331 66-313 (330)
28 COG5006 rhtA Threonine/homoser 99.4 2.8E-10 6.1E-15 99.7 26.9 257 38-328 17-278 (292)
29 KOG1444 Nucleotide-sugar trans 99.4 5.7E-11 1.2E-15 107.8 22.4 284 36-334 14-302 (314)
30 KOG2765 Predicted membrane pro 99.4 1.9E-11 4.2E-16 112.4 17.4 215 112-332 164-390 (416)
31 KOG1582 UDP-galactose transpor 99.4 1.1E-10 2.3E-15 103.2 19.7 227 101-333 103-333 (367)
32 PF00892 EamA: EamA-like trans 99.2 1.8E-10 4E-15 92.0 10.7 122 45-177 2-124 (126)
33 COG2510 Predicted membrane pro 99.2 2.9E-10 6.2E-15 89.5 11.2 134 37-179 6-139 (140)
34 KOG1442 GDP-fucose transporter 99.1 5.1E-11 1.1E-15 105.3 5.1 262 66-333 61-328 (347)
35 PF13536 EmrE: Multidrug resis 99.1 6.5E-10 1.4E-14 88.2 9.9 72 110-182 37-109 (113)
36 PF03151 TPT: Triose-phosphate 99.0 2.1E-08 4.6E-13 83.5 15.9 140 193-332 1-153 (153)
37 KOG4314 Predicted carbohydrate 98.9 5.3E-08 1.1E-12 82.5 13.5 205 115-331 61-275 (290)
38 PF06800 Sugar_transport: Suga 98.8 1.6E-06 3.5E-11 78.3 22.0 214 105-329 43-268 (269)
39 COG5070 VRG4 Nucleotide-sugar 98.8 2.1E-07 4.5E-12 80.4 14.8 219 109-331 70-295 (309)
40 TIGR00950 2A78 Carboxylate/Ami 98.8 3E-07 6.4E-12 83.4 16.7 131 35-175 129-260 (260)
41 PF03151 TPT: Triose-phosphate 98.7 7.1E-07 1.5E-11 74.3 14.6 140 36-177 2-151 (153)
42 PRK15051 4-amino-4-deoxy-L-ara 98.6 3E-07 6.6E-12 72.6 9.5 64 115-178 45-108 (111)
43 PF00892 EamA: EamA-like trans 98.6 7.2E-07 1.6E-11 71.0 10.9 124 202-330 1-124 (126)
44 COG2510 Predicted membrane pro 98.5 1.2E-06 2.6E-11 69.3 10.7 128 194-331 5-138 (140)
45 PF05653 Mg_trans_NIPA: Magnes 98.5 3.3E-06 7E-11 78.4 14.4 70 108-179 53-122 (300)
46 PTZ00343 triose or hexose phos 98.4 8.3E-06 1.8E-10 77.6 15.6 142 35-178 195-347 (350)
47 PRK10532 threonine and homoser 98.4 1E-05 2.2E-10 75.0 15.8 133 35-180 149-282 (293)
48 PRK02971 4-amino-4-deoxy-L-ara 98.4 2E-05 4.3E-10 63.9 14.9 121 192-334 2-124 (129)
49 PRK11689 aromatic amino acid e 98.4 1.1E-05 2.5E-10 74.8 15.5 131 35-179 157-287 (295)
50 TIGR00817 tpt Tpt phosphate/ph 98.4 1.9E-06 4.1E-11 80.2 10.1 141 35-180 146-294 (302)
51 PRK11272 putative DMT superfam 98.4 9.8E-06 2.1E-10 75.1 14.8 135 35-180 151-286 (292)
52 PLN00411 nodulin MtN21 family 98.3 1.5E-05 3.3E-10 75.9 15.2 63 118-180 267-329 (358)
53 TIGR03340 phn_DUF6 phosphonate 98.3 1.7E-05 3.7E-10 73.0 14.6 130 194-332 3-135 (281)
54 PRK13499 rhamnose-proton sympo 98.2 0.0016 3.5E-08 61.3 26.1 167 35-209 8-191 (345)
55 PRK11453 O-acetylserine/cystei 98.0 0.00016 3.4E-09 67.3 15.1 142 36-180 145-288 (299)
56 PRK15430 putative chlorampheni 98.0 0.00028 6.1E-09 65.5 16.2 136 189-330 5-143 (296)
57 PRK02971 4-amino-4-deoxy-L-ara 98.0 4.1E-05 8.8E-10 62.1 8.8 66 115-180 56-123 (129)
58 PF08449 UAA: UAA transporter 98.0 0.00018 3.9E-09 67.0 14.3 144 35-180 155-298 (303)
59 TIGR00688 rarD rarD protein. T 97.9 0.00074 1.6E-08 61.2 16.3 135 192-330 2-140 (256)
60 PRK10452 multidrug efflux syst 97.9 0.00014 3.1E-09 57.9 9.4 70 111-180 34-104 (120)
61 PRK09541 emrE multidrug efflux 97.8 0.00018 3.9E-09 56.5 9.4 67 113-179 36-103 (110)
62 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00037 8.1E-09 64.5 12.6 131 35-179 153-288 (290)
63 PRK11431 multidrug efflux syst 97.8 0.00024 5.2E-09 55.3 9.4 67 112-178 34-101 (105)
64 COG2076 EmrE Membrane transpor 97.8 0.0002 4.4E-09 55.3 8.6 69 111-179 34-103 (106)
65 PRK10650 multidrug efflux syst 97.8 0.00022 4.9E-09 55.8 8.9 67 111-177 39-106 (109)
66 PF06800 Sugar_transport: Suga 97.7 0.00084 1.8E-08 60.9 13.2 118 35-168 139-256 (269)
67 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00048 1E-08 54.3 9.6 61 271-331 48-108 (111)
68 COG0697 RhaT Permeases of the 97.7 0.0025 5.5E-08 58.0 15.8 131 36-180 156-288 (292)
69 PF05653 Mg_trans_NIPA: Magnes 97.6 0.00055 1.2E-08 63.6 11.2 116 189-329 4-119 (300)
70 PF13536 EmrE: Multidrug resis 97.6 0.0017 3.6E-08 51.3 12.0 62 272-334 47-108 (113)
71 PRK10452 multidrug efflux syst 97.5 0.0013 2.9E-08 52.4 10.1 66 271-336 41-107 (120)
72 COG5006 rhtA Threonine/homoser 97.4 0.0036 7.9E-08 55.6 12.3 129 38-178 152-281 (292)
73 KOG2922 Uncharacterized conser 97.4 0.0011 2.3E-08 60.9 9.0 66 115-180 72-137 (335)
74 KOG1441 Glucose-6-phosphate/ph 97.3 0.00049 1.1E-08 64.0 6.6 142 35-179 164-307 (316)
75 PF00893 Multi_Drug_Res: Small 97.3 0.0011 2.4E-08 50.5 7.2 55 115-169 37-92 (93)
76 PRK09541 emrE multidrug efflux 97.2 0.0046 9.9E-08 48.6 10.0 60 275-334 45-105 (110)
77 PF10639 UPF0546: Uncharacteri 96.9 0.0028 6.1E-08 49.8 6.4 69 109-177 43-112 (113)
78 COG2076 EmrE Membrane transpor 96.9 0.011 2.5E-07 45.7 9.3 62 271-332 41-103 (106)
79 PRK11431 multidrug efflux syst 96.8 0.019 4.2E-07 44.6 9.9 61 272-332 41-102 (105)
80 PRK10650 multidrug efflux syst 96.7 0.02 4.4E-07 44.8 9.6 60 272-331 47-107 (109)
81 PF06027 DUF914: Eukaryotic pr 96.6 0.11 2.4E-06 49.0 15.2 137 37-181 171-307 (334)
82 KOG1581 UDP-galactose transpor 96.4 0.04 8.7E-07 50.4 10.6 136 35-176 173-310 (327)
83 TIGR00803 nst UDP-galactose tr 96.4 0.059 1.3E-06 47.6 11.8 66 111-176 156-221 (222)
84 PF04657 DUF606: Protein of un 96.4 0.39 8.4E-06 39.3 15.7 131 194-329 3-138 (138)
85 COG2962 RarD Predicted permeas 96.3 0.17 3.6E-06 46.2 14.0 132 39-180 153-284 (293)
86 PF10639 UPF0546: Uncharacteri 96.3 0.04 8.6E-07 43.4 8.8 108 199-329 3-111 (113)
87 COG4975 GlcU Putative glucose 96.2 0.0009 1.9E-08 59.1 -1.0 265 36-330 4-283 (288)
88 KOG4510 Permease of the drug/m 96.0 0.025 5.3E-07 50.9 7.1 130 37-177 194-323 (346)
89 PF00893 Multi_Drug_Res: Small 95.5 0.079 1.7E-06 40.2 7.4 51 273-323 42-93 (93)
90 PRK13499 rhamnose-proton sympo 94.8 1.5 3.3E-05 41.5 15.1 75 104-179 257-341 (345)
91 PF04657 DUF606: Protein of un 94.7 2 4.3E-05 35.1 14.7 121 41-176 12-138 (138)
92 KOG1580 UDP-galactose transpor 94.6 0.058 1.3E-06 47.6 4.9 67 110-176 244-310 (337)
93 PF04142 Nuc_sug_transp: Nucle 94.4 0.2 4.3E-06 45.2 8.1 65 271-335 28-92 (244)
94 COG3238 Uncharacterized protei 92.3 5.7 0.00012 32.9 15.0 137 191-334 4-148 (150)
95 KOG2922 Uncharacterized conser 92.3 0.1 2.3E-06 48.1 2.7 122 189-335 18-140 (335)
96 COG5070 VRG4 Nucleotide-sugar 91.9 0.85 1.8E-05 40.2 7.7 112 64-179 183-296 (309)
97 KOG1444 Nucleotide-sugar trans 91.3 1.2 2.6E-05 41.2 8.5 143 35-180 158-301 (314)
98 COG4975 GlcU Putative glucose 89.3 0.18 3.8E-06 45.0 1.3 90 71-169 182-271 (288)
99 COG3238 Uncharacterized protei 88.6 13 0.00028 30.8 13.0 125 41-179 16-146 (150)
100 KOG1583 UDP-N-acetylglucosamin 87.1 3.2 6.9E-05 37.9 7.7 48 131-178 266-313 (330)
101 PF07857 DUF1632: CEO family ( 86.9 4.8 0.0001 36.4 8.9 127 193-332 1-134 (254)
102 PF04342 DUF486: Protein of un 86.6 1.5 3.2E-05 33.9 4.6 38 293-330 69-106 (108)
103 PF06379 RhaT: L-rhamnose-prot 85.1 14 0.0003 34.8 11.2 132 189-331 4-152 (344)
104 KOG2765 Predicted membrane pro 83.3 29 0.00063 33.2 12.4 140 37-181 250-392 (416)
105 COG3169 Uncharacterized protei 81.8 7 0.00015 29.7 6.3 40 293-332 76-115 (116)
106 KOG4831 Unnamed protein [Funct 78.3 22 0.00047 27.6 8.1 67 109-176 54-122 (125)
107 PF05915 DUF872: Eukaryotic pr 74.3 16 0.00035 28.8 6.8 11 3-13 1-11 (115)
108 KOG1443 Predicted integral mem 71.7 65 0.0014 30.1 10.9 76 104-179 240-315 (349)
109 PF07857 DUF1632: CEO family ( 68.8 74 0.0016 28.9 10.7 123 36-179 2-134 (254)
110 PF04342 DUF486: Protein of un 67.0 17 0.00036 28.1 5.2 51 127-177 55-106 (108)
111 KOG3912 Predicted integral mem 63.8 24 0.00053 32.4 6.4 56 275-330 101-156 (372)
112 PF05297 Herpes_LMP1: Herpesvi 60.8 2.8 6E-05 38.2 0.0 96 125-225 41-138 (381)
113 COG3169 Uncharacterized protei 59.2 20 0.00043 27.4 4.2 30 148-177 84-113 (116)
114 KOG1582 UDP-galactose transpor 58.2 28 0.00062 31.8 5.9 115 65-181 219-334 (367)
115 PF02694 UPF0060: Uncharacteri 56.3 20 0.00044 27.8 4.0 48 285-332 54-103 (107)
116 PRK02237 hypothetical protein; 53.7 85 0.0018 24.4 7.0 45 287-331 58-104 (109)
117 PRK15087 hemolysin; Provisiona 49.9 1.8E+02 0.0039 25.6 14.2 17 317-333 172-188 (219)
118 KOG4831 Unnamed protein [Funct 46.8 27 0.00058 27.1 3.3 40 291-330 84-123 (125)
119 COG1742 Uncharacterized conser 45.2 1.4E+02 0.0031 23.1 10.3 47 135-181 60-106 (109)
120 PF06379 RhaT: L-rhamnose-prot 44.0 2.9E+02 0.0063 26.2 13.9 107 106-212 72-193 (344)
121 PF02694 UPF0060: Uncharacteri 44.0 66 0.0014 25.0 5.1 47 135-181 59-105 (107)
122 KOG2234 Predicted UDP-galactos 43.3 3E+02 0.0064 26.2 15.4 59 273-331 105-163 (345)
123 PRK02237 hypothetical protein; 40.5 1.8E+02 0.0038 22.7 11.3 46 136-181 62-107 (109)
124 TIGR01065 hlyIII channel prote 38.3 2.6E+02 0.0057 24.1 14.2 24 314-337 155-178 (204)
125 KOG1442 GDP-fucose transporter 37.3 23 0.0005 32.5 2.0 138 28-173 181-321 (347)
126 PF03373 Octapeptide: Octapept 37.0 17 0.00037 14.6 0.5 6 7-12 2-7 (8)
127 PF06123 CreD: Inner membrane 32.0 5.1E+02 0.011 25.5 13.2 64 149-219 313-378 (430)
128 KOG4314 Predicted carbohydrate 30.5 1E+02 0.0022 27.0 4.6 52 280-331 73-124 (290)
129 TIGR01167 LPXTG_anchor LPXTG-m 27.8 93 0.002 18.1 3.0 23 311-333 9-31 (34)
130 COG1742 Uncharacterized conser 27.8 2.8E+02 0.006 21.5 6.1 51 284-334 54-106 (109)
131 PF09656 PGPGW: Putative trans 26.5 2.1E+02 0.0045 19.3 5.3 45 163-217 5-49 (53)
132 PF06570 DUF1129: Protein of u 24.6 4.6E+02 0.01 22.6 12.2 15 146-160 188-202 (206)
133 PRK11715 inner membrane protei 21.2 8E+02 0.017 24.2 13.1 60 154-220 324-385 (436)
134 PF11026 DUF2721: Protein of u 20.8 94 0.002 24.9 2.7 58 27-85 57-115 (130)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-46 Score=338.64 Aligned_cols=299 Identities=37% Similarity=0.593 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCCcccccchhhhhhh
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV--TDDNRLSTTLDEVIVYP 111 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~ 111 (337)
|+.++.+++++++.....|+++..++..|.|++.+++.|++|+.+|..+.++..|+ ++. ...+.....|++.++.+
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 78899999999999999999998778899999999999999999999988433211 110 00111235567889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc---CCCC---c
Q 019654 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN---SNSD---R 185 (337)
Q Consensus 112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~---~~~~---~ 185 (337)
+|+++|+++|+++|+++.++|++++++..|+++++||+++.++|+||++++||.++++.++|+.++|.+ +.+. .
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~ 176 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSES 176 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999943 2111 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHH
Q 019654 186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL 265 (337)
Q Consensus 186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
...++..|..+++.+++++|++++|.||++|+.+. +.|+||+|++++|++++++.....|++++.+.++++||++.+|.
T Consensus 177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~ 255 (345)
T KOG2234|consen 177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWL 255 (345)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHH
Confidence 23467899999999999999999999999998775 99999999999999999999888888877788999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 266 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 266 ~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
.++.++++|++++.++||+|++.|.+++.++++++.+.|+.+||.++|..+++|+.+|+.++++|+..|.
T Consensus 256 vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 256 VVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996665
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=3.8e-38 Score=282.79 Aligned_cols=222 Identities=41% Similarity=0.730 Sum_probs=205.2
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 101 ~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
..++|+.+++++||++|+++|++.|++++++|++++|++.|+++++||++++++||||++++||.|+++.++|+++++.+
T Consensus 11 ~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 11 WKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCC------c------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcch
Q 019654 181 SNSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFD 248 (337)
Q Consensus 181 ~~~~------~------~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
+..+ + ...+...|+++++++++++|+++||+||++|+.+. ++|.+|+|++.+|++++++.....+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~ 169 (244)
T PF04142_consen 91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGS 169 (244)
T ss_pred CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4321 0 01245789999999999999999999999999874 999999999999999999988777888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654 249 AVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 323 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV 323 (337)
++.+.++++|+++.+|..++.++++|+++++++||+|++.|++++.++++++.++++++||.++|..+++|..+|
T Consensus 170 ~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 170 AISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred ccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 888889999999999999999999999999999999999999999999999999999999999999999998765
No 3
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=5.3e-26 Score=215.14 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
.|..+++.=+.+++..++.|.+-+ ...+|....+.|..++.++.+++.. +++++. ++.+.+||++..+++.|
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~---~G~~~~~~~~~R~~iA~l~Ll~~~~--~~~~~~---~~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATS---KGLNIYPFLGYSYLLASLLLLPSLF--FTNRSR---SLPPLSVSILSKIGLLG 85 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---CCCCccHHHHHHHHHHHHHHHHHHH--HHHHhc---ccCcchHHHHHHHHHHH
Confidence 488899888899999999998764 4567778899999999888877763 222211 11123466766777788
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHhhhhcccccCCCC----
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNSD---- 184 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~------Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~---- 184 (337)
++.+.++.+.+.|++|++++.++++.++.|++|+++++++ +|||++++||+|++++++|+.++...++..
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 7776788899999999999999999999999999999999 699999999999999999998876432110
Q ss_pred ----------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHH-HHHHHHHHHHHHhcc
Q 019654 185 ----------------RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYV-FGMAFNAVAIVIQDF 247 (337)
Q Consensus 185 ----------------~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 247 (337)
....+...|+.++++++++||++++.++|..+++++ ....+.+... .+.....+....++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~ 243 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKN 243 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccC
Confidence 001122459999999999999999999999888764 2222222222 233333333322211
Q ss_pred hhhhhccccccchHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654 248 DAVMNKGFFHGYSFITVLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 323 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~i~~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV 323 (337)
+.. .....++...+ .+++.++ +..+..+.+++.++...+...+..|++++++|++++||++++.+++|+++|
T Consensus 244 -~~~--~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI 319 (358)
T PLN00411 244 -NPS--VWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI 319 (358)
T ss_pred -Ccc--cceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 110 00111222222 2333333 334455567888999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCC
Q 019654 324 SVSVYLHSAGK 334 (337)
Q Consensus 324 ~~gv~ly~~~~ 334 (337)
+.|+++.+..+
T Consensus 320 l~Gv~l~~~~~ 330 (358)
T PLN00411 320 TLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHhhh
Confidence 99999877543
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=6e-25 Score=203.97 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=190.7
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhh
Q 019654 32 PTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYP 111 (337)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
+.++++..++..+.|+.+++.+|.. ++++|.++++.|.+++.++.+++.. .+++. +..++..+++++.....
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 77 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMS--ICRQW-SYLKTLIQTPQKIFMLA 77 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH--HHccH-HHHHHHHcCHHHHHHHH
Confidence 3445788888899999999999986 3588999999999998876666552 22111 00001012344443344
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccch
Q 019654 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPL 191 (337)
Q Consensus 112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~ 191 (337)
..++....++.++|+|++++|+++++++.++.|+++++++++++|||++++||.|++++++|+.++..+.+ + ..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~- 151 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP- 151 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc-
Confidence 55666788999999999999999999999999999999999999999999999999999999998754321 1 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHH--HHHH
Q 019654 192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL--MILN 269 (337)
Q Consensus 192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 269 (337)
.+.+++++++|++.++.||..++... .....+. +..++..+.............. ........+. ..+.
T Consensus 152 ---~~~l~aa~~~a~~~i~~r~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 222 (296)
T PRK15430 152 ---IIALGLAFSFAFYGLVRKKIAVEAQT-GMLIETM----WLLPVAAIYLFAIADSSTSHMG-QNPMSLNLLLIAAGIV 222 (296)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHH----HHHHHHHHHHHHHccCCccccc-CCcHHHHHHHHHHHHH
Confidence 35788899999999999886432211 2222222 2222222221110100000000 0011111111 1123
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654 270 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 270 ~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l 329 (337)
.+++..+..+.+|+.++...+...+..|+++.++|++++||++++.+++|+++|+.|+.+
T Consensus 223 t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v 282 (296)
T PRK15430 223 TTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI 282 (296)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 445566778888999999999999999999999999999999999999999999887654
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=4.3e-25 Score=205.26 Aligned_cols=280 Identities=15% Similarity=0.186 Sum_probs=204.2
Q ss_pred HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHH
Q 019654 42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN 121 (337)
Q Consensus 42 l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~ 121 (337)
+.++.+++........++ +.+.|..+ .++.++.-.++-.+... +|+...+ .....+++.++|.+.|+++...|
T Consensus 21 lsl~~~~t~~~s~~l~~~-~~~~P~~Q-s~~~Y~~l~~vy~~~~~--~r~~~~~---~~~~~~~~~w~y~lla~~Dv~aN 93 (334)
T PF06027_consen 21 LSLCITGTGTFSSLLANK-GVNIPTFQ-SFFNYVLLALVYTPILL--YRRGFKK---WLKVLKRPWWKYFLLALLDVEAN 93 (334)
T ss_pred HHHHHHhHHHHHHHHHhc-CccCcHHH-HHHHHHHHHHHHhhhhh--hcccccc---chhhcchhHHHHHHHHHHHHHHH
Confidence 566666666666654443 33444444 45555543333233331 3432211 11122345567899999999999
Q ss_pred HHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC----cccccchhHHHHH
Q 019654 122 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD----RVLQTPLQGWIMA 197 (337)
Q Consensus 122 ~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~----~~~~~~~~G~~l~ 197 (337)
.+...|++|++.+.++++.++.+++++++++++||||+++.|++|++++++|+.++...+... ...+++..|++++
T Consensus 94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~ 173 (334)
T PF06027_consen 94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA 173 (334)
T ss_pred HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999998876653211 1224678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH-HH---HHHHH
Q 019654 198 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM-IL---NHALS 273 (337)
Q Consensus 198 l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~---~~a~~ 273 (337)
+++++++|+++|++|++.|+++ ..+...++++++.+++.+.....++++..+.. +++..+.. +. .....
T Consensus 174 l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~----w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIESIH----WTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred HHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhccC----CChhhHHHHHHHHHHHHHH
Confidence 9999999999999999999865 34445677888988888766544544333211 22222221 11 22233
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 274 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 274 g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
..++..+++..++...+....++.+++.++++++||+++++..++|.++|+.|..+|+..++
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 45567778888888888888889999999999999999999999999999999999986544
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=4.3e-24 Score=198.47 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 115 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al 115 (337)
.+..++..++|+++.+++|..- ++.+|.+.+++|..++.+..+++. ++++ .+++.... .++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~----~~~~--------~~~~~~~~---~g~ 66 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFV----ARPK--------VPLNLLLG---YGL 66 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHh----cCCC--------CchHHHHH---HHH
Confidence 3567778999999999999865 468999999999988665544433 2211 11232222 233
Q ss_pred H-HHHHHHHHHHHHhc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhH
Q 019654 116 L-YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 193 (337)
Q Consensus 116 l-~~~~~~l~f~al~~-l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G 193 (337)
+ ...+..++|.++++ .|++.++++.++.|+++++++++++|||++++||.+++++++|+.++..++.++ .+....|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G 144 (299)
T PRK11453 67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence 2 34555677889988 789999999999999999999999999999999999999999998886432211 1123469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHH
Q 019654 194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS 273 (337)
Q Consensus 194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~ 273 (337)
+.+++.+++++|.++++.||..++.+.........+....+.+.........+...... ..+..++...|..+++.++.
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~ 223 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFV 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHH
Confidence 99999999999999999999876544211111112211222111111111112111000 00112344455555555544
Q ss_pred hHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654 274 GIA-----VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 274 g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
+.. ....+++.++...+...+.+|+++.++|++++||++++.+++|+++|+.|+++...+
T Consensus 224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 443 444456677778888889999999999999999999999999999999999875433
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=4.6e-24 Score=197.64 Aligned_cols=270 Identities=14% Similarity=0.046 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 116 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all 116 (337)
+.+++..+.|+++.+.+|... ++.+|.+.+++|..++.++.+++. .++++. . . ++++.....+.|.+
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~---~~~~~~-~--~---~~~~~~~~~~~g~~ 77 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFL---LLRGHP-L--P---TLRQWLNAALIGLL 77 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH---HHhCCC-C--C---cHHHHHHHHHHHHH
Confidence 567788999999999999875 368899999999999888777765 222211 1 1 12333334555554
Q ss_pred -HHHHHHHHHHHH-hcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 117 -YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 117 -~~~~~~l~f~al-~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
...++.+.+.+. +++|++.++++.++.|+++++++.+ +|||++++||.|++++++|+.++..++.. +....|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G~ 152 (292)
T PRK11272 78 LLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWGA 152 (292)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHHH
Confidence 356788889999 9999999999999999999999985 79999999999999999999887543221 1335799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHH---
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA--- 271 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a--- 271 (337)
++.+++++++|+++++.||..+++ +......++. .+.+...+.....+. .. ....+...|..+++.+
T Consensus 153 l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 153 ILILIASASWAFGSVWSSRLPLPV---GMMAGAAEML-AAGVVLLIASLLSGE-RL-----TALPTLSGFLALGYLAVFG 222 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHH-HHHHHHHHHHHHcCC-cc-----cccCCHHHHHHHHHHHHHH
Confidence 999999999999999999875432 2222223322 232222222211111 00 0001223343333333
Q ss_pred --HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 272 --LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 272 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
++..+..+..|+.++...+...+.+|+++.+++++++||++|+.+++|+++|+.|+++.+..+
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566788888888888999999999999999999999999999999999998766543
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=2.2e-24 Score=200.06 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHH
Q 019654 34 GSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 113 (337)
Q Consensus 34 ~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 113 (337)
++++..++.++.|+++.+..|..- ++++|....++|..++.++.+++. ++++ .++.++.. ....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~----~~~~------~~~~~~~~--~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTV----GFPR------LRQFPKRY--LLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHc----cccc------cccccHHH--HHHH
Confidence 346788889999999999999875 569999999999988876655542 1111 11112221 2233
Q ss_pred HHHHHHHHHHHHHHHh----cCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc----
Q 019654 114 AVLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR---- 185 (337)
Q Consensus 114 all~~~~~~l~f~al~----~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~---- 185 (337)
++.++.++.+.|.+++ ++++++++++.++.|+++++++++++|||++++||.|++++++|+.++..++.+.+
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 4446677778887775 46888999999999999999999999999999999999999999988865432110
Q ss_pred --ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHH
Q 019654 186 --VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT 263 (337)
Q Consensus 186 --~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (337)
...+...|+.+++.+++++|.++++.||..++.+. .. ......+..+ .+.... +.+.. ...+...
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~--~~---~~~~~~~~~l-~~~~~~-~~~~~------~~~~~~~ 214 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG--IT---LFFILTALAL-WIKYFL-SPQPA------MVFSLPA 214 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hh---HHHHHHHHHH-HHHHHH-hcCcc------ccCCHHH
Confidence 00123469999999999999999999998665542 21 1111112222 111111 11110 0122233
Q ss_pred HHHHHH----HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 264 VLMILN----HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 264 ~~~i~~----~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
|..+++ .+++..+..+.+|+.++...+...+..|+++.+++++++||++++.+++|+++|+.|+++..
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 333333 23344455677888899999999999999999999999999999999999999999986544
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.93 E-value=2.1e-22 Score=190.90 Aligned_cols=277 Identities=13% Similarity=0.105 Sum_probs=189.3
Q ss_pred HHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHH
Q 019654 44 VLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL 122 (337)
Q Consensus 44 ~~~~~~~i~~k~~~~~~~~~~~-~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~ 122 (337)
.++....+..|+.- ..+| |.++..+|.+++.+++..+. ..+.+ +.++.....++.......|+++...+.
T Consensus 59 ~~s~~~~~~nK~vl----~~~~~P~~l~~~~~~~~~l~~~~~~---~~~~~--~~~~~~~~~~~~~~llp~gl~~~~~~~ 129 (350)
T PTZ00343 59 ALNVLYVVDNKLAL----NMLPLPWTISSLQLFVGWLFALLYW---ATGFR--KIPRIKSLKLFLKNFLPQGLCHLFVHF 129 (350)
T ss_pred HHHHHHHHHHHHHH----HhCChhHHHHHHHHHHHHHHHHHHH---HhCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455543 2467 99999999999876654433 11111 111221111244456777787777777
Q ss_pred HHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHH
Q 019654 123 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL 202 (337)
Q Consensus 123 l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~ 202 (337)
..+.|+++.+++.++++..+.|+++++++++++|||++++++.++++.++||.+...++. +....|+++++++++
T Consensus 130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~ 204 (350)
T PTZ00343 130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNL 204 (350)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999864221 123679999999999
Q ss_pred HHHHHHHHHHHHhhhCCCC--chHHHHHHH--HHHHHHHHHHHHHHhcchhhhh---c--cccccchH-HHHHHHHHHHH
Q 019654 203 LSGFAGVYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIVIQDFDAVMN---K--GFFHGYSF-ITVLMILNHAL 272 (337)
Q Consensus 203 ~~a~~~v~~e~~~k~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~~~~i~~~a~ 272 (337)
++|+++++.||.+++++.. +....+.+. ...+.++.++.....+...... . ..+..+.. ..+..++..++
T Consensus 205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l 284 (350)
T PTZ00343 205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGV 284 (350)
T ss_pred HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 9999999999998765410 111122222 3455555555443222211000 0 00111111 11112233333
Q ss_pred HhHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 273 SGIAVS----MVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 273 ~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
.+.+.. +.+++.++...+....+.+++++++|++++||++|+.+++|.++++.|+++|+.-|
T Consensus 285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 333333 46778889999999999999999999999999999999999999999999998653
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=1.7e-23 Score=194.72 Aligned_cols=277 Identities=13% Similarity=0.156 Sum_probs=187.2
Q ss_pred HHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHH
Q 019654 44 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLL 123 (337)
Q Consensus 44 ~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l 123 (337)
..+.+..+.-|+.-++ --+|....+.|..++.+.+.+. ++... ++ +.+.++++.......|++.+.+..+
T Consensus 12 ~~~~~~~~~NK~~l~~---~~~P~~~~~~~~~~~~~~~~~~----~~~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNV---FPYPYFKTLISLAVGSLYCLLS----WSSGL-PK--RLKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHH----HHhCC-CC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555665432 1337888888887776554433 22111 11 1122345555677778888889999
Q ss_pred HHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHH
Q 019654 124 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALL 203 (337)
Q Consensus 124 ~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~ 203 (337)
.+.+++|++++.++++.++.|+++++++++++|||+++++|.+++++++|+.+...+ +. +....|++++++++++
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~----~~~~~G~~~~l~a~~~ 156 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-EL----SFNWAGFLSAMISNIT 156 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-cc----cccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876421 11 2335699999999999
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccc---cch-HHHHHHHHHHHH-----Hh
Q 019654 204 SGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFH---GYS-FITVLMILNHAL-----SG 274 (337)
Q Consensus 204 ~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~i~~~a~-----~g 274 (337)
+|++.++.||..++++. +......+....+.++..+.....+..+....+... ..+ ...+...+..+. .+
T Consensus 157 ~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (302)
T TIGR00817 157 FVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ 235 (302)
T ss_pred HHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 99999999998873222 122223344444555544443322211111000000 001 112221222221 11
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~ 336 (337)
....+.+++.++...+......|++++++|++++||++|+.+++|+++++.|+++|++.|.|
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 12234678889999999999999999999999999999999999999999999999966554
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=9.4e-23 Score=185.34 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=184.3
Q ss_pred HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHH
Q 019654 46 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY 125 (337)
Q Consensus 46 ~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f 125 (337)
|+.+.+..|..-+ ...|+.++.+.|.+.+.++..++. +++ . + +++++. .....++...+++.+.|
T Consensus 1 Wg~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~---~~~-~--~----~~~~~~--~~~~~~~~~~l~~~~~~ 65 (260)
T TIGR00950 1 WGTTGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLL---RRR-P--P----LKRLLR--LLLLGALQIGVFYVLYF 65 (260)
T ss_pred CcchHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH---Hhc-c--C----HhHHHH--HHHHHHHHHHHHHHHHH
Confidence 6788899998643 357888999999888777666654 332 1 1 112222 23333344678999999
Q ss_pred HHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHHHH
Q 019654 126 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG 205 (337)
Q Consensus 126 ~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a 205 (337)
.|++++|+++.+++.++.|+++++++.+++|||++++||.|+.++++|+.++..+++. +....|+.+.+.++++++
T Consensus 66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----~~~~~G~~~~l~a~~~~a 141 (260)
T TIGR00950 66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL----SINPAGLLLGLGSGISFA 141 (260)
T ss_pred HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc----cccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888654321 234679999999999999
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchH--HHHHHHHHHHHHhHHHHHHHHH
Q 019654 206 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSF--ITVLMILNHALSGIAVSMVMKY 283 (337)
Q Consensus 206 ~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~a~~g~~~~~~~~~ 283 (337)
.++++.||..++.+..+.. .+.+....+.++..+.....+ +... ....++ ..+..++...++..+..+.+|+
T Consensus 142 ~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 215 (260)
T TIGR00950 142 LGTVLYKRLVKKEGPELLQ-FTGWVLLLGALLLLPFAWFLG-PNPQ----ALSLQWGALLYLGLIGTALAYFLWNKGLTL 215 (260)
T ss_pred HHHHHHhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHhcC-CCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988766531221 121223334433333322211 1100 111111 1122223344455566677888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Q 019654 284 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSV 327 (337)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv 327 (337)
.++...+...+++|+++.+++++++||+++..+++|..+++.|+
T Consensus 216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 89989999999999999999999999999999999999999986
No 12
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.92 E-value=2.1e-22 Score=187.50 Aligned_cols=262 Identities=20% Similarity=0.286 Sum_probs=198.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654 65 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 144 (337)
Q Consensus 65 ~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p 144 (337)
.|..+.+.......+++.+.. ...+. + + .+.+....+.+.++++.+++.+.+.|++|+|.++.+++++++|
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~---~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~ 101 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILL---SLFKF--P-K---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKP 101 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---Hhccc--c-C---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHH
Confidence 477888888777777666655 22211 1 1 1123334588889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 019654 145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 219 (337)
Q Consensus 145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~-----~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~ 219 (337)
++|++++.+++|||++++||.++++.++|+++....+..+... .+...|+.+++.+.++.|+.++++||+.++++
T Consensus 102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~ 181 (303)
T PF08449_consen 102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG 181 (303)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987654322111 11234999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccccchHHHHH---HHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 019654 220 SRNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVL---MILNHALSGIAVSMVMKYADNIVKVYSTSV 295 (337)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~ 295 (337)
. +.+....+...++.++..+.... +.++......+...++...+. ..+.++++...+.+..++.++...+..+.+
T Consensus 182 ~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~ 260 (303)
T PF08449_consen 182 K-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTL 260 (303)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH
Confidence 6 55677777788888877765543 111111111111122222121 223445566667777888999999999999
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654 296 AMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336 (337)
Q Consensus 296 ~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~ 336 (337)
+.+++.++|+++|||++++.+++|.++++.|+.+|+.+++|
T Consensus 261 Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 261 RKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999876654
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=6e-22 Score=183.59 Aligned_cols=268 Identities=12% Similarity=-0.017 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
++..+++.++.|+.+..++|+.- ++++|.+.+++|.+++.++.+++. .+++. +. ++|+.......|
T Consensus 13 ~~~~~~la~~~~~~~~~~~K~~~----~~~~~~~~~~~R~~~a~l~l~~~~---~~~~~-----~~--~~~~~~~~~~~g 78 (293)
T PRK10532 13 PILLLLIAMASIQSGASLAKSLF----PLVGAPGVTALRLALGTLILIAIF---KPWRL-----RF--AKEQRLPLLFYG 78 (293)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHH---hHHhc-----cC--CHHHHHHHHHHH
Confidence 46888899999999999999875 358999999999999887766654 22211 11 122333344566
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
+++...+.+.|++++|+|++.+.++.++.|+++++++. ||.++ +.++.++++|+.++..++.+. .+....|+
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~--~~~~~~G~ 150 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV--SHVDLTGA 150 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc--ccCChHHH
Confidence 66788889999999999999999999999999998873 55544 455677899998875332211 12245799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHH-----HHHHHHH
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI-----TVLMILN 269 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~ 269 (337)
++.+++++++|++.+..||..++++. . ....+ ...+.+...+.....+.. . ..++. .++.++.
T Consensus 151 ll~l~aa~~~a~~~v~~r~~~~~~~~--~-~~~~~-~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 151 ALALGAGACWAIYILSGQRAGAEHGP--A-TVAIG-SLIAALIFVPIGALQAGE-A-------LWHWSILPLGLAVAILS 218 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc--h-HHHHH-HHHHHHHHHHHHHHccCc-c-------cCCHHHHHHHHHHHHHH
Confidence 99999999999999999998766542 2 22222 233333333322221110 0 01222 2333444
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654 270 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336 (337)
Q Consensus 270 ~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~ 336 (337)
+.++..+..+.+++.++...+...+++|+++.++|++++||++++.+++|+++|+.|+..+....+|
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445556667788899999999999999999999999999999999999999999999887654444
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.89 E-value=2.7e-22 Score=178.58 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC--ccc
Q 019654 110 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVL 187 (337)
Q Consensus 110 ~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~--~~~ 187 (337)
+.+|+..|+.+|.+.+.++...++...+.. +.+.+.++++..-.++++++..||.++.....|+..++.++..+ ...
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~ 80 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF 80 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence 568999999999999999999999999999 99999999999999999999999999999999999887654321 111
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH
Q 019654 188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI 267 (337)
Q Consensus 188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 267 (337)
++...|..+.+.+++++++.++|+|+..|+++. .++.+++++..++.+.+.......+.+...+.+++++++...|..+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 355778889999999999999999999887654 7899999999999887655544444444555667778888899999
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 268 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 268 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
+.+++++.++++++|+.|++.++++..++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999999887
No 15
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.89 E-value=9e-21 Score=166.70 Aligned_cols=290 Identities=17% Similarity=0.245 Sum_probs=206.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhc---cC----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------Ccccc
Q 019654 37 IVTLALTVLTSSQAILIVWSKR---AG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD-------NRLST 102 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~---~~----~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~-------~~~~~ 102 (337)
++-++++.-++.|.++.||+.+ +| ++++-....+|+.|+.++.+-..+- .|..+.... .+.+.
T Consensus 6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~~ 82 (372)
T KOG3912|consen 6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDSS 82 (372)
T ss_pred hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCcccccccccccccC
Confidence 4456677888999999999764 22 4667788999999998776533332 222222111 11112
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC-
Q 019654 103 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS- 181 (337)
Q Consensus 103 ~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~- 181 (337)
+.++ ..+..|++++...+.++|.|+.+++++.+|+++...++||++++..+||++++.+||+|+....+|++++...+
T Consensus 83 pf~p-~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~ 161 (372)
T KOG3912|consen 83 PFNP-VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDV 161 (372)
T ss_pred CCCc-ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeec
Confidence 3333 34566999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred --CCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHH----Hhcchhhh--
Q 019654 182 --NSDR--VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV----IQDFDAVM-- 251 (337)
Q Consensus 182 --~~~~--~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 251 (337)
.+++ ..++...|+++++.+.+.-|++.+++||.+|+++..|... .-+-+.+|.++..+... .+.+++.+
T Consensus 162 ~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~a-vg~eGlfG~v~~slL~i~m~yi~~~~sfS~~ 240 (372)
T KOG3912|consen 162 HLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQA-VGWEGLFGLVILSLLAIPMYYIPSGDSFSCN 240 (372)
T ss_pred ccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH-hhhhhhHHHHHHHHHHHHHhheecCCcCcCC
Confidence 1221 2245678999999999999999999999999987634433 34557777444332221 12221111
Q ss_pred hccccccchHHHH--------HHHH------HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 019654 252 NKGFFHGYSFITV--------LMIL------NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF 317 (337)
Q Consensus 252 ~~~~~~~~~~~~~--------~~i~------~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~ 317 (337)
..+.++-+.. .| +.+. ..+..+..-..+.|+.++..+......+..+.++++..+.+|.+...|+
T Consensus 241 ~~g~~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqi 319 (372)
T KOG3912|consen 241 PRGVLEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQI 319 (372)
T ss_pred CCcchhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 1121111110 01 1111 1112222223456888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 019654 318 LGSIVVSVSVYLHSA 332 (337)
Q Consensus 318 ~G~~lV~~gv~ly~~ 332 (337)
.|.++.+.|+.+|+.
T Consensus 320 lGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 320 LGFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999984
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=1.1e-20 Score=171.64 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccch-hhhhhhH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLD-EVIVYPI 112 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i 112 (337)
+++..++..+.|+.+++++|.. .+++|.++++.|.+++.++.+++.. .++++.+..++.+ .+++ .......
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHH
Confidence 3677888899999999999984 2489999999999998766555442 1211100001111 1112 2334677
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchh
Q 019654 113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ 192 (337)
Q Consensus 113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~ 192 (337)
.+++...++.++++|++++|+++++++.++.|+++++++++++|||++++||.+++++++|+.++..++. + ..
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~----~~-- 148 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S----LP-- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C----ch--
Confidence 7887889999999999999999999999999999999999999999999999999999999988754321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH--HHHH
Q 019654 193 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM--ILNH 270 (337)
Q Consensus 193 G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ 270 (337)
.+++++++++|++.+..||..++ +. . +.........++........++....+ ......+.++. .+..
T Consensus 149 --~~~l~aa~~~a~~~i~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~t 218 (256)
T TIGR00688 149 --WEALVLAFSFTAYGLIRKALKNT-DL--A--GFCLETLSLMPVAIYYLLQTDFATVQQ---TNPFPIWLLLVLAGLIT 218 (256)
T ss_pred --HHHHHHHHHHHHHHHHHhhcCCC-Cc--c--hHHHHHHHHHHHHHHHHHHhccCcccc---cCchhHHHHHHHHHHHH
Confidence 34688999999999999886542 21 1 111111122222222211112211110 00001111111 1234
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019654 271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFL 307 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~l 307 (337)
.++..+....+|+.++...+...++.|+++.++++++
T Consensus 219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788899999999999999999999999764
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.87 E-value=4.5e-20 Score=170.04 Aligned_cols=271 Identities=12% Similarity=0.090 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 36 AIVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k-~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
.++-++..+.++...+..| .+++ .++.+ +.+.....++.+|+.. ++..+ ..++..++ +........+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-----~~~~~--~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~--~~~~~~~~~~ 70 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-----EPDFL--WWALLAHSVLLTPYGL--WYLAQ-VGWSRLPA--TFWLLLAISA 70 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-----hhHHH--HHHHHHHHHHHHHHHH--Hhccc-CCCCCcch--hhHHHHHHHH
Confidence 3556777889999999988 4432 22332 4444444555555542 22111 11111111 2222344555
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
+....+..+.+.|+++.|++..+.+.++.|+++++++++++|||++++||.|+++++.|+.++..++.. .....|+
T Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~~~~~g~ 146 (281)
T TIGR03340 71 VANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----QHRRKAY 146 (281)
T ss_pred HHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----ccchhHH
Confidence 667889999999999999999999999999999999999999999999999999999999887653221 1224588
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHH-HHHHHH---hcchhhhhccccccchH--HHHHHHH
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIVI---QDFDAVMNKGFFHGYSF--ITVLMIL 268 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~i~ 268 (337)
.+.++++++++++++..|+..++.++ . ....+...++.+.. .+.... .+..... ...... ..+...+
T Consensus 147 ~~~l~aal~~a~~~i~~k~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 147 AWALAAALGTAIYSLSDKAAALGVPA--F-YSALGYLGIGFLAMGWPFLLLYLKRHGRSMF----PYARQILPSATLGGL 219 (281)
T ss_pred HHHHHHHHHHHHhhhhccccccchhc--c-cccHHHHHHHHHHHHHHHHHHHHHHhccchh----hhHHHHHHHHHHHHH
Confidence 88999999999999988776443321 1 00111112222221 111111 1111000 000011 1222223
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654 269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l 329 (337)
..+++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3344445556677777777777778889999999999999999999999999999999875
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=8.3e-19 Score=160.96 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 115 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al 115 (337)
+...+...+.|+......|...++ +.++....+.|......+..+.. .+++. . +.+...+........++
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~~~~~~~~ 78 (292)
T COG0697 9 LLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLL---LLEPR--G--LRPALRPWLLLLLLALL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHH---Hhhcc--c--ccccccchHHHHHHHHH
Confidence 456666778999999888876532 46677777778887776633333 22211 0 11111111223455556
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 116 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 116 l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~-~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
....++.+.+.++++++++.++++.++.|++++++++ +++|||+++++|.++++++.|+.++..++..+.. + ...|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-~-~~~g~ 156 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-L-SLLGL 156 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-H-HHHHH
Confidence 6788999999999999999999999999999999997 7779999999999999999999999875443211 1 46899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHh
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g 274 (337)
.+.+++++++|++.++.|+.. +.+. ........ ..+...........+.. . ......+....+..++..+++.
T Consensus 157 ~~~l~a~~~~a~~~~~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 157 LLALAAALLWALYTALVKRLS-RLGP--VTLALLLQ-LLLALLLLLLFFLSGFG--A-PILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCh--HHHHHHHH-HHHHHHHHHHHHhcccc--c-cCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 3332 11111011 11111111111111110 0 0000001112222233333445
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
.+..+.++..++...+...+..|+++.+++++++||+++..+++|.++++.|+.+.+.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 290 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 5566677777888878888999999999999999999999999999999999998876643
No 19
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.83 E-value=9.5e-19 Score=156.07 Aligned_cols=256 Identities=16% Similarity=0.231 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654 65 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 144 (337)
Q Consensus 65 ~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p 144 (337)
++..++|...+.+++++..++. +++.. ....+.++.+...++.+.++..++|.|++|++-++..+..+++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~~-------~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm 120 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLK--WWKKE-------LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM 120 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--ccccc-------CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence 5788899999999998876662 32211 12234555688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc----ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 019654 145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220 (337)
Q Consensus 145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~----~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~ 220 (337)
+.++++..++.|+|++..+++..++...||.+....+.+++ ...+..+|+.++...-++.|+.+..+++++|+++.
T Consensus 121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~ 200 (327)
T KOG1581|consen 121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV 200 (327)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence 99999999999999999999999999999998876533321 12356799999999999999999999999997765
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH---HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q 019654 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM---ILNHALSGIAVSMVMKYADNIVKVYSTSVAM 297 (337)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (337)
+.+..+..+..|+.+.+....+. .+.-.....|...++...+-+ -.+.++|+.++.+.++..+++.-...+.++-
T Consensus 201 -s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk 278 (327)
T KOG1581|consen 201 -SSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK 278 (327)
T ss_pred -cHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence 66667778888999988877543 221111112333334333333 3356778889999999999999999999999
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 298 LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 298 ~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
+++.+++.++||+++++.|++|..+|++|+++-.
T Consensus 279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 9999999999999999999999999999987543
No 20
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.74 E-value=1.2e-18 Score=152.47 Aligned_cols=265 Identities=11% Similarity=0.110 Sum_probs=181.2
Q ss_pred HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCcccccchhhhhhhHHHHHHHHH
Q 019654 42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TDDNRLSTTLDEVIVYPIPAVLYLVK 120 (337)
Q Consensus 42 l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~all~~~~ 120 (337)
-.+++.++.+..|.. +.+|.+..-.|.+..+++.+|... +++... .+ +-++.| +.++|+..+..
T Consensus 46 s~ff~~~~vv~t~~~------e~~p~e~a~~r~l~~mlit~pcli--y~~~~v~gp--~g~R~~-----LiLRg~mG~tg 110 (346)
T KOG4510|consen 46 SYFFNSCMVVSTKVL------ENDPMELASFRLLVRMLITYPCLI--YYMQPVIGP--EGKRKW-----LILRGFMGFTG 110 (346)
T ss_pred HHHHhhHHHhhhhhh------ccChhHhhhhhhhhehhhhheEEE--EEeeeeecC--CCcEEE-----EEeehhhhhhH
Confidence 355555666665665 355888888887777777777552 222221 11 111122 45566777778
Q ss_pred HHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC----C----C-cccccch
Q 019654 121 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----S----D-RVLQTPL 191 (337)
Q Consensus 121 ~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~----~----~-~~~~~~~ 191 (337)
..+.|+|++|++.+.+.++.++.|.+|.++++.+||||.|+..-++..+.+.||+++..++. + + +......
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 88999999999999999999999999999999999999999999999999999999887642 1 1 1112356
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccccchHHHHHHH-H
Q 019654 192 QGWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMI-L 268 (337)
Q Consensus 192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i-~ 268 (337)
+|....+.++++.|--.+..|++-|+.+. .+. .+....+.+.+++.... ..++ .+.. +-+++....+ +
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msv----syf~~i~lV~s~I~~~~ig~~~-lP~c----gkdr~l~~~lGv 261 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSV----SYFSLITLVVSLIGCASIGAVQ-LPHC----GKDRWLFVNLGV 261 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEe----hHHHHHHHHHHHHHHhhcccee-cCcc----ccceEEEEEehh
Confidence 78889999999998888999988887653 122 22233344444443321 1221 1111 1111111111 2
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
...++++++...++.-.+-..+..+++..+++.++.+++|||.||++.++|+++|+.+....
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 33445666666665545555678889999999999999999999999999999999987543
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=6.1e-17 Score=139.41 Aligned_cols=218 Identities=15% Similarity=0.204 Sum_probs=171.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCC--Cc
Q 019654 108 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS--DR 185 (337)
Q Consensus 108 ~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~--~~ 185 (337)
+.|+..+..|.+.....+.|+++.|-++..+-.+++|+.++++.+++.+++++++++.++++.++||++....+.. +.
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~ 165 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA 165 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 3588888999999999999999999999999999999999999999999999999999999999999999876431 22
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH--hcchhhhhccccccchHHH
Q 019654 186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI--QDFDAVMNKGFFHGYSFIT 263 (337)
Q Consensus 186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 263 (337)
++.....|.++.+++-.+.++.+..+||+-+.+...+- -.+..+.+||.+.....++. +-|+-. -|.+.++...
T Consensus 166 e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~-~MM~~~NlwStL~Lg~g~lfTGElweF~---yF~~RhP~~~ 241 (337)
T KOG1580|consen 166 EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGT-SMMFYTNLWSTLYLGAGLLFTGELWEFF---YFVQRHPYVF 241 (337)
T ss_pred cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCch-hhHHHHHHHHHHHhhhhheehhhHHHHH---HHHHhccHHH
Confidence 23456789999999999999999999999877654222 22345667787766555432 112100 0112233222
Q ss_pred H---HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654 264 V---LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 264 ~---~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l 329 (337)
| +..+..++|++++.....+.+....++.+.++..++++.|+++|+++++..||+|..+|+.+...
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 2 22235567888888888888888888889999999999999999999999999999999998753
No 22
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.68 E-value=6.1e-14 Score=129.76 Aligned_cols=269 Identities=11% Similarity=0.113 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 115 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al 115 (337)
+++.++..+.|+++++..|... +.++.+.+ +..++.++...+... .++ . + .+.++.+..-.+.|+
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~-~~~-~---~---~~~~~~~~~g~l~G~ 67 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAI-FVL-P---E---FWALSIFLVGLLSGA 67 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHH-HhC-C---c---ccccHHHHHHHHHHH
Confidence 4677888999999999999874 35555554 444444433332210 221 1 1 111222222344456
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHhh-hHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHhhhhcccccCCCCcc-c--
Q 019654 116 LYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSDRV-L-- 187 (337)
Q Consensus 116 l~~~~~~l~f~al~~l~~~~~~ll~~-~~pl~talla~~~Lkekls~~q----w~~l~l~~~Gv~lv~~~~~~~~~-~-- 187 (337)
.....|.+++.+.++++.+.+..+.+ +++++.++++.+++|||.++++ +.|+++.++|+.++...++++.. +
T Consensus 68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~ 147 (290)
T TIGR00776 68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE 147 (290)
T ss_pred HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence 67889999999999999999999999 9999999999999999999999 99999999999988654322111 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH
Q 019654 188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN-INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM 266 (337)
Q Consensus 188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
.+...|+.+.++++++++++.+..|+. + +++.+ ...+..-+...+.++..+. .+.++. .+...|..
T Consensus 148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~--------~~~~~~~~ 214 (290)
T TIGR00776 148 FNFKKGILLLLMSTIGYLVYVVVAKAF-G-VDGLSVLLPQAIGMVIGGIIFNLGH---ILAKPL--------KKYAILLN 214 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHc-C-CCcceehhHHHHHHHHHHHHHHHHH---hcccch--------HHHHHHHH
Confidence 223569999999999999999999865 2 33211 1112222222233332221 000000 01122222
Q ss_pred HH---HHHHHhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHhhhccC
Q 019654 267 IL---NHALSGIAVSMVMK-YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF----LGSIVVSVSVYLHSA 332 (337)
Q Consensus 267 i~---~~a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~----~G~~lV~~gv~ly~~ 332 (337)
++ ..+++..+.....+ +.+.......++..|+.+++.+++++||+.+..++ +|.++|+.|+.+...
T Consensus 215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 11 12333333333445 66667777888899999999999999999999999 999999999877543
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.64 E-value=3.8e-13 Score=120.33 Aligned_cols=273 Identities=15% Similarity=0.154 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHH
Q 019654 34 GSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 113 (337)
Q Consensus 34 ~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 113 (337)
+++++.+..-++|+..+...|+. ++.++.++..-|-+-.+.+.+..+.. .|+.+ ...+..+++|.+..+.+.
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~-~r~~~--~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFL-LRQWR--ELKQLLKQPKTLLMLALT 78 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHH-HhhhH--HHHHHHhCcHHHHHHHHH
Confidence 34688888999999999999998 46889999999988766655554421 12211 112234566777777888
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhH
Q 019654 114 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 193 (337)
Q Consensus 114 all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G 193 (337)
+++-..+-.++.+|..+=..-++++=...+|++..+++.+++|||+++.||+|++++.+||..-.....+ -+...
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~-----lpwva 153 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS-----LPWVA 153 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC-----CcHHH
Confidence 8877788888889999999999999999999999999999999999999999999999999876553221 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccc-cchHHHHHHHHHHH
Q 019654 194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFH-GYSFITVLMILNHA 271 (337)
Q Consensus 194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~i~~~a 271 (337)
+.-++.+++|+..-| ..|-++..++...... -.+.++..... .+..+ +.. +.+...++.+....
T Consensus 154 ----l~la~sf~~Ygl~RK-~~~v~a~~g~~lE~l~----l~p~al~yl~~l~~~~~-----~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 154 ----LALALSFGLYGLLRK-KLKVDALTGLTLETLL----LLPVALIYLLFLADSGQ-----FLQQNANSLWLLLVLAGL 219 (293)
T ss_pred ----HHHHHHHHHHHHHHH-hcCCchHHhHHHHHHH----HhHHHHHHHHHHhcCch-----hhhcCCchHHHHHHHhhH
Confidence 344667777776554 4443322233222222 22233332222 22211 111 11112222222211
Q ss_pred HHh---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654 272 LSG---IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 272 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
+.. .+.+..-|+.+-..-++.+|.+|..-.+++++++||+++..+.+..+.|-.|..+|+.+
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 12223335556667788999999999999999999999999999999999999888743
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.54 E-value=3.9e-14 Score=130.61 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=157.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc
Q 019654 106 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 185 (337)
Q Consensus 106 ~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~ 185 (337)
.+......|+.++++..+.+.+++++|.+.++++..+.|+++.++++++.+|+.++..+.+++....||.+....+.
T Consensus 82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~--- 158 (316)
T KOG1441|consen 82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL--- 158 (316)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---
Confidence 33456777888999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCchHHHHHHHHHHHHHHHH-HHHHHhcchhhhhccccccchHH
Q 019654 186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP--SRNINVQNFWLYVFGMAFNA-VAIVIQDFDAVMNKGFFHGYSFI 262 (337)
Q Consensus 186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (337)
+-...|....+.+.+..++.+++.++++++++ -++.. ...++.-.+....+ |.....++... ..-....++..
T Consensus 159 --~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~-ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~ 234 (316)
T KOG1441|consen 159 --SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMN-LLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT 234 (316)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchH-HHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh
Confidence 23478999999999999999999999996432 21221 11122222333333 22222222111 00011122222
Q ss_pred HHHHHHHH---HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 263 TVLMILNH---ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 263 ~~~~i~~~---a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
.+..++.. -..++....++.+.+++.-+.+..+.-++....|+++|+|++|+.+.+|.++-+.|+++|++-|.
T Consensus 235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 22222221 11234445566666777777776666677888899999999999999999999999999996554
No 25
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.53 E-value=7.2e-13 Score=118.64 Aligned_cols=288 Identities=16% Similarity=0.166 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhh-hhhHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI-VYPIPA 114 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~-~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~a 114 (337)
...+.+++.|=.-.+..++.+.+-+++|+ |.-++-+-.++++.++..... .+++. .++.|...+|++.+ +.+..|
T Consensus 15 V~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~--l~~~~-~~r~r~~~sw~~~Lr~~aPta 91 (349)
T KOG1443|consen 15 VLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRR--LYQCS-VPRARVVLSWRDYLRRLAPTA 91 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHH--HHhcc-CCccccCCcHHHHHHHhhhhh
Confidence 44555567776667777887654333343 556666777788776655432 22222 22334556787554 456667
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
+.-...-.+.+++++|++.+.|++.++..|+|+.+++..+-=||.++.-..-+++..+|+.+....+.+ -...|.
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq-----f~i~Gf 166 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ-----FNIEGF 166 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc-----eeehhH
Confidence 777889999999999999999999999999999999998888999999999999999999888775432 346799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC--CchHHHHHHHHHHHHHHHHHHHHHhcch-hhhhccccccch-HHHHHHHHHH
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPS--RNINVQNFWLYVFGMAFNAVAIVIQDFD-AVMNKGFFHGYS-FITVLMILNH 270 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~i~~~ 270 (337)
.++.++++++|+-..+.++++++.+. +++.....++.-+-.+..++..+..++. ...+...+..++ ...+..+...
T Consensus 167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i 246 (349)
T KOG1443|consen 167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI 246 (349)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence 99999999999999999999988762 1222222333222222233322222332 221111121112 1234444444
Q ss_pred HHHhHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654 271 ALSGIAVSMVM--------KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 271 a~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
+++|.. ++.+ ...+.+..+++.-..-+.+.+++..+.+|+++...++|..+...|+..|..+
T Consensus 247 ~l~g~l-aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 247 SLGGLL-AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred HHHHHH-HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 555542 3322 2233444455555666789999999999999999999999999999999544
No 26
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.47 E-value=9.8e-15 Score=127.32 Aligned_cols=246 Identities=16% Similarity=0.205 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHH
Q 019654 66 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII 145 (337)
Q Consensus 66 ~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl 145 (337)
|..-.|+...+-.++=-+++. +|++ ..+..||+ |.+.|+.+.-+|.+.-.|.||++....+++-+..++
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~--fR~~------~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip 116 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIML--FRRK------YIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIP 116 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHH--hhhH------HHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence 566667777654443333332 4431 22344565 788888888899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC---CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 019654 146 STGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 222 (337)
Q Consensus 146 ~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~---~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~ 222 (337)
.+.+++|++||.|+++.|..|++++..||.++..++- +++...++..|+.++++++.++|.+++.+|.+-|+.+
T Consensus 117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d--- 193 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD--- 193 (336)
T ss_pred HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc---
Confidence 9999999999999999999999999999988776531 1222347889999999999999999999999998875
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH---HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019654 223 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI---LNHALSGIAVSMVMKYADNIVKVYSTSVAMLL 299 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (337)
..+..-+++.+|.+++.+-.+. +..+.... .|++.....+ +...+...+....+|..++..-+....++-++
T Consensus 194 ~~elm~~lgLfGaIIsaIQ~i~-~~~~~~tl----~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmw 268 (336)
T KOG2766|consen 194 RVELMGFLGLFGAIISAIQFIF-ERHHVSTL----HWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMW 268 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hccceeeE----eehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHH
Confidence 3455567788899988887543 32222110 1222111111 11112223334445555666556666667788
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 300 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 300 ~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
+.++ ..||-+.+|...+..+.+..|..+|..
T Consensus 269 sl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 269 SLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 8877 789999999999999999999999963
No 27
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.45 E-value=8.8e-14 Score=122.73 Aligned_cols=222 Identities=16% Similarity=0.258 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc--
Q 019654 109 VYPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR-- 185 (337)
Q Consensus 109 ~~~i~all~~~~~~l~f~al~~-l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~-- 185 (337)
.|.+.-..++..|.+.++|+++ +|.+...++++..++.+++++++++|+|++.+|+.++++..+|+++.....+.|.
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 3666656678899999999997 9999999999999999999999999999999999999999999998765322110
Q ss_pred ------------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH--HHhcchhhh
Q 019654 186 ------------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI--VIQDFDAVM 251 (337)
Q Consensus 186 ------------~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 251 (337)
.......|+.+...+.+.+|..++|+|..+|+++.+ ..+...+.-+.+.++.++.. +..++....
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Flf~~~div~~~~~~~ 224 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAF 224 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHHHhcchHHHHHHHHh
Confidence 011235799999999999999999999999998862 22222332333333322211 011111110
Q ss_pred hc-----cccccchHHHHHHHHHHHHHh-HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 019654 252 NK-----GFFHGYSFITVLMILNHALSG-IAVSMVMKY---ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIV 322 (337)
Q Consensus 252 ~~-----~~~~~~~~~~~~~i~~~a~~g-~~~~~~~~~---~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~l 322 (337)
.. ......-+..|.-++.+.+.+ .|+-.++-. .++...+..-.++..++.++|+..|++++|+++++|+.+
T Consensus 225 ~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~l 304 (330)
T KOG1583|consen 225 KSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAAL 304 (330)
T ss_pred cCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHH
Confidence 00 011111233444444444443 233322211 123333344456778999999999999999999999999
Q ss_pred HHHHhhhcc
Q 019654 323 VSVSVYLHS 331 (337)
Q Consensus 323 V~~gv~ly~ 331 (337)
|+.|..+|.
T Consensus 305 VF~Gt~~fa 313 (330)
T KOG1583|consen 305 VFFGTLLFA 313 (330)
T ss_pred HHHHHHHHH
Confidence 999998886
No 28
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.44 E-value=2.8e-10 Score=99.70 Aligned_cols=257 Identities=15% Similarity=0.075 Sum_probs=155.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHH
Q 019654 38 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY 117 (337)
Q Consensus 38 ~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~ 117 (337)
++...+....+.. +.|-.. ..+.+.-+..+|-.++.++.+.+. +.||++- -+.+|+....| |+.-
T Consensus 17 ll~amvsiq~Gas-~Ak~LF----P~vG~~g~t~lRl~~aaLIll~l~-RPwr~r~------~~~~~~~~~~y---GvsL 81 (292)
T COG5006 17 LLVAMVSIQSGAS-FAKSLF----PLVGAAGVTALRLAIAALILLALF-RPWRRRL------SKPQRLALLAY---GVSL 81 (292)
T ss_pred HHHHHHHHHhhHH-HHHHHc----cccChhhHHHHHHHHHHHHHHHHh-hHHHhcc------ChhhhHHHHHH---HHHH
Confidence 3444455555554 334433 345678888899888877766654 2232211 12345554444 4445
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHH
Q 019654 118 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMA 197 (337)
Q Consensus 118 ~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~ 197 (337)
..-|.++|.+++.+|.+++..+-++.|+.++++ ..||..-.-|++ +.+.|..+..-.+++ ..+.+..|..+.
T Consensus 82 g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwva--LAvlGi~lL~p~~~~--~~~lDp~Gv~~A 153 (292)
T COG5006 82 GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVA--LAVLGIWLLLPLGQS--VWSLDPVGVALA 153 (292)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHH--HHHHHHHhheeccCC--cCcCCHHHHHHH
Confidence 778999999999999999999999999999876 445555445555 556666555322211 112456899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHH
Q 019654 198 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAV 277 (337)
Q Consensus 198 l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~ 277 (337)
+++..||+.|-+..+|.-+..+- .....+-+ ..+.++..+.-....+ ..++ ++.....-+..++-...+
T Consensus 154 l~AG~~Wa~YIv~G~r~g~~~~g--~~g~a~gm-~vAaviv~Pig~~~ag-----~~l~---~p~ll~laLgvavlSSal 222 (292)
T COG5006 154 LGAGACWALYIVLGQRAGRAEHG--TAGVAVGM-LVAALIVLPIGAAQAG-----PALF---SPSLLPLALGVAVLSSAL 222 (292)
T ss_pred HHHhHHHHHHHHHcchhcccCCC--chHHHHHH-HHHHHHHhhhhhhhcc-----hhhc---ChHHHHHHHHHHHHhccc
Confidence 99999999999999998754332 11111111 1122222221111011 1111 222222212222223333
Q ss_pred HH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh
Q 019654 278 SM-----VMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY 328 (337)
Q Consensus 278 ~~-----~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ 328 (337)
-| .++..++..-+......|.++++.|++++||.+|+.||+|++.|+.+..
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 33 4455555554555667899999999999999999999999999998775
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.7e-11 Score=107.79 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 115 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al 115 (337)
++..+...+.-....++-|+.-. .++||..-.+.+-+-+..++.+.++ ++.+.-+.+ ..+|+..+++..+++
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~l----k~~~lv~~~--~l~~~~~kk~~P~~~ 85 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVL----KRLGLVNFR--PLDLRTAKKWFPVSL 85 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH----HHhceeecC--CcChHHHHHHccHHH
Confidence 35555566666666677776443 3778766555444444444444443 333321111 245666677888888
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHH
Q 019654 116 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI 195 (337)
Q Consensus 116 l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~ 195 (337)
++...-.....+++|++.+++.+++...|+.|++.-..++|.|.+..-|.++....+|......++.. ....|+.
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-----f~~~gY~ 160 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-----FNLRGYS 160 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-----ecchhHH
Confidence 88888888888999999999999999999999999999999999999999999999998777554322 2345899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH-HHhcchhhhhccccccchHHHHHHHHHHHHHh
Q 019654 196 MAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274 (337)
Q Consensus 196 l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g 274 (337)
+++...++.+...++.|+..+..+. +-+....+=.+.+.+...+.. ..+|++....+ +-.......+..+...++.+
T Consensus 161 w~~~n~~~~a~~~v~~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~-~~~~~~~~~~~~~~lScv~g 238 (314)
T KOG1444|consen 161 WALANCLTTAAFVVYVKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLN-FDNWSDSSVLVVMLLSCVMG 238 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhh-cccccchhHHHHHHHHHHHH
Confidence 9999999999999999998876542 111111121233444444433 23444411111 10011233455555555555
Q ss_pred HHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 275 IAVSMVM----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 275 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
..+.|.. +..++.............+.+.+.+.+|++.++.-++|..+-+.|..+|+..+
T Consensus 239 f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 239 FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 5555433 33344444444444455666777778899999999999999999888887544
No 30
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.40 E-value=1.9e-11 Score=112.42 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC---cccc
Q 019654 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD---RVLQ 188 (337)
Q Consensus 112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~---~~~~ 188 (337)
..+.+-+++|.....|+++++.+..+++.++.-+||-.++..+.+||+++.|.+++++.+.||+++...++.+ ....
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 3445578899999999999999999999999999999999999999999999999999999999997654321 1223
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCchHHHHHHHHHHHH---HHHHHHHHHhcchhhhhccccccchHHHH
Q 019654 189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFGM---AFNAVAIVIQDFDAVMNKGFFHGYSFITV 264 (337)
Q Consensus 189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (337)
.+..|.++.+++|+.+|.+.+..+|-..+++ ..++ + ...++.|+ ++.-+..++.+.- ..+-|+..+....
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi--~-lffGfvGLfnllllwP~l~iL~~~---~~e~F~lP~~~q~ 317 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDI--Q-LFFGFVGLFNLLLLWPPLIILDFF---GEERFELPSSTQF 317 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccH--H-HHHHHHHHHHHHHHhHHHHHHHHh---ccCcccCCCCcee
Confidence 5689999999999999999999998877764 2232 1 22233332 2222222211110 0001111111111
Q ss_pred HHHHHHHHHhHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 265 LMILNHALSGIAVSMVMK-----YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 265 ~~i~~~a~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
..++...+.+.+++=.+| ..+....+....+++..+++...++=|.++++.+++|...|+.|-+..|.
T Consensus 318 ~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 318 SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 122222233333332222 23444444445567789999999999999999999999999999887663
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.1e-10 Score=103.15 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=163.8
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 101 ~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
..+||. |.+.+.+-.....+..-++.|++-++..+..+++.+.+++.+.++=++|+....+.+..+..+|.+...+.
T Consensus 103 ~iP~rt---Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 103 VIPWRT---YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred ecchhH---hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence 345664 77788877888899999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccch
Q 019654 181 SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYS 260 (337)
Q Consensus 181 ~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (337)
++..+. +-..+|+.++-++-++.|+-+-.+||.+|.++..+ .+..++-+..|.++.+..+.. .++-.+...+...++
T Consensus 180 Ds~~sP-NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp 256 (367)
T KOG1582|consen 180 DSQTSP-NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHP 256 (367)
T ss_pred ccccCC-CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCc
Confidence 543221 22468999999999999999999999999887633 222222233344444333322 221111111222223
Q ss_pred HHHHHHHHHH----HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654 261 FITVLMILNH----ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 261 ~~~~~~i~~~----a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
+.++...+.- -+|...+-..+|..++......++.+..++.++|+++|..++|....-|..+|+.|+++-..+
T Consensus 257 ~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 257 VRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 3232222211 122223333457778888888889999999999999999999999999999999999865433
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.19 E-value=1.8e-10 Score=92.04 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH-HHHHHHH
Q 019654 45 LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLL 123 (337)
Q Consensus 45 ~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all-~~~~~~l 123 (337)
.|+...+..|... ++++|.+..+.|...+.+ .+++.. ..+++. ....++++.......+.+ ...++.+
T Consensus 2 ~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 5777888888765 348899999999998876 444332 122111 112233444445556666 4789999
Q ss_pred HHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 124 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 124 ~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
.+.|++++|++..+++.++.|+++++++++++||+++++||.|+++.+.|+.++
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876
No 33
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.19 E-value=2.9e-10 Score=89.51 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 116 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all 116 (337)
+..++.+++++..+++.|.-- ++.+|....+.|.++...++..+.+ ..++..... ..+.|.+....+.|+.
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl----~~vdp~~At~IRtiVi~~~l~~v~~---~~g~~~~~~--~~~~k~~lflilSGla 76 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGL----EGVDPDFATTIRTIVILIFLLIVLL---VTGNWQAGG--EIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHHHHHHHH---hcCceeccc--ccCcceehhhhHHHHH
Confidence 445667888999999999864 4577899999999887776666652 222211100 1234555566777777
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
..++..++|.|++.=+++...-+..+.|++++++++++||||++..+|+|+.+..+|++++..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 889999999999999999999999999999999999999999999999999999999988753
No 34
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.1e-11 Score=105.29 Aligned_cols=262 Identities=16% Similarity=0.156 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654 66 VTTANFLVETLKCALSLAALARIWNHE-GVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 144 (337)
Q Consensus 66 ~~~~vf~re~~~l~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p 144 (337)
|.-..+...++...+|+.+-.. .++. +....++...+.+........++.+.+.-....+.++|.+.+-+++=+++..
T Consensus 61 plf~t~~qcLvt~~~c~~ls~l-s~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSL-SVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 5666666666666666654411 1111 1111122222222222233334445555566677899999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchH
Q 019654 145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNIN 224 (337)
Q Consensus 145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~ 224 (337)
+|+.++++++||+|-+..-..+-++.+.|..+-.-.+ +....-...|.++.+.++++-|+-++|++|.....++ .+|
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw 216 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIW 216 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccc--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eeh
Confidence 9999999999999998877666555555544322111 1112345789999999999999999999987655444 688
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cchhhhhccccccchHHHHHHHHHHHHHhHHHHHHH----HHhhHHHHHHHHHHHHHH
Q 019654 225 VQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM----KYADNIVKVYSTSVAMLL 299 (337)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~----~~~~~~~~~~~~~~~~~~ 299 (337)
....+...+++++.++.+.+. +.+.+ .++.+.+....|..+...++.|..+.++. |..++...++........
T Consensus 217 ~lt~ynnv~a~lLflpll~lnge~~~v--~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~a 294 (347)
T KOG1442|consen 217 RLTAYNNVNALLLFLPLLILNGEFQAV--VGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAA 294 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchHHHH--cCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHH
Confidence 888888888888877766542 22222 23333346677888878888887777654 556777777776777777
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654 300 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 300 ~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
-.++++.+.+|.-+..-|-|-.+|+.|...|+..
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v 328 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV 328 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence 7889999999999999999999999999988743
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.10 E-value=6.5e-10 Score=88.23 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=63.2
Q ss_pred hhHHHHHH-HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC
Q 019654 110 YPIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN 182 (337)
Q Consensus 110 ~~i~all~-~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~ 182 (337)
....|++. ..++.++++|+++.| +..+++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34445554 488999999999999 5888999999999999999999999999999999999999999977543
No 36
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.01 E-value=2.1e-08 Score=83.51 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC----CCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--cccc-c--chHHH
Q 019654 193 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK--GFFH-G--YSFIT 263 (337)
Q Consensus 193 G~~l~l~a~~~~a~~~v~~e~~~k~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--~~~~~ 263 (337)
|.++++.+.++.|+..++.|+.+++. ...+......+....+.++..+.....|+.+..+. .... . .+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999999999984 22244444455566677766665544333221110 0010 0 02222
Q ss_pred HHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 264 VLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 264 ~~~i~~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
+..++..++ .+.....++++.+++..+....+..+...++|+++|||++|..+++|.++.+.|+++|+.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 333333232 334455677889999999999999999999999999999999999999999999999973
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.88 E-value=5.3e-08 Score=82.50 Aligned_cols=205 Identities=12% Similarity=0.127 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 194 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 194 (337)
++.+..|+++..|++.++++.++.+..++-.|+-++++..||+|+...+.++.++...|++++...++ +..+..+|+
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN---~~a~e~iGi 137 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN---EHADEIIGI 137 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc---hhhhhhhhH
Confidence 34578899999999999999999999999999999999999999999999999999999999876432 224678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHH-HH-----HhcchhhhhccccccchHHHHHHHH
Q 019654 195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA-IV-----IQDFDAVMNKGFFHGYSFITVLMIL 268 (337)
Q Consensus 195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 268 (337)
...+++++.+|++.|..++.....+.....-....++++-.++.-.. .+ .+++++.. ...|.-+.
T Consensus 138 ~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA---------~~PWG~l~ 208 (290)
T KOG4314|consen 138 ACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFA---------AAPWGCLC 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHh---------hCCchhhh
Confidence 99999999999999999988765432111111122333333332211 11 12222211 11111111
Q ss_pred HHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 269 NHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 269 ~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
..+. .+..+.+.+-....+..+.-..++..-.+.+..+.-+-..+...+.|.++|..|-.+.-
T Consensus 209 G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 209 GAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred hHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 1110 01111111111122222223334455667778777777788888999999999976543
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=1.6e-06 Score=78.34 Aligned_cols=214 Identities=12% Similarity=0.177 Sum_probs=138.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHhhhhcccc
Q 019654 105 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQL 179 (337)
Q Consensus 105 ~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~----~l~l~~~Gv~lv~~ 179 (337)
+.+..-.+.|++..+.+..+|.+++++..+.+.=+ ...+.+.+++.++++++|--+..++. |+++..+|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 56666778888899999999999999998855544 47888999999999999999888876 88888899988776
Q ss_pred cCCCCcc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccc
Q 019654 180 NSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFF 256 (337)
Q Consensus 180 ~~~~~~~---~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
.++.+.. .++..-|+...+++.+.+..|.+..+- .+-++...+..|.+ |.++..+.......+. ++
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqai-----Gm~i~a~i~~~~~~~~-----~~ 191 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAI-----GMLIGAFIFNLFSKKP-----FF 191 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHH-----HHHHHHHHHhhccccc-----cc
Confidence 5443321 224456999999999999998888653 33222112222222 3333222221111111 11
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHhhh
Q 019654 257 HGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLA----FFLGSIVVSVSVYL 329 (337)
Q Consensus 257 ~~~~~~~~~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~----~~~G~~lV~~gv~l 329 (337)
+..++...+.-+.-++++.+.....+..+....-..+.++++++.+.|.+++||+=+.. .++|.++|+.|..+
T Consensus 192 ~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 192 EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 11122222222223344444444444444444445567789999999999999997754 57888888887654
No 39
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.81 E-value=2.1e-07 Score=80.35 Aligned_cols=219 Identities=13% Similarity=0.153 Sum_probs=142.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc--c
Q 019654 109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--V 186 (337)
Q Consensus 109 ~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~--~ 186 (337)
.+..++++-+.--.-.--+++|++.+.+++..+..++.+|..-..++|.|++.....+.++..+.-.+...++.... .
T Consensus 70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~ 149 (309)
T COG5070 70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK 149 (309)
T ss_pred hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence 45566665555445555689999999999999999999999999999999999999998888777665544322110 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH-HHhcchhhhhccccccchH--HH
Q 019654 187 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSF--IT 263 (337)
Q Consensus 187 ~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~ 263 (337)
......|.+++...++..+..-...||..|-..... ...+.+-...+.++.+... +.+||.+.. .-.+.+. ..
T Consensus 150 ~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n---~annl~~d~l~ 225 (309)
T COG5070 150 AQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGN---LANNLSVDSLM 225 (309)
T ss_pred hcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcch---hhcCCChHHHH
Confidence 124567999999999999988888888766432211 1122232334555444332 356664321 1112222 23
Q ss_pred HHHHHHHHHHh--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 264 VLMILNHALSG--IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 264 ~~~i~~~a~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
|..+-.....| .+.++..|..++..-....+....-.++.|.++|||+.+...+....+=..+..+|.
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 33332111111 233444555566666666666667788899999999999999998888777666665
No 40
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.80 E-value=3e-07 Score=83.38 Aligned_cols=131 Identities=15% Similarity=0.005 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
..+..++..+.|+...+..|...++ .+.++.+....+..++.++.++.. ...+.. .. .+.++.......+
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~---~~--~~~~~~~~~~~~~ 198 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFA---WFLGPN---PQ--ALSLQWGALLYLG 198 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHH---HhcCCC---CC--cchHHHHHHHHHH
Confidence 4677888899999999999887532 222233343355667666666665 322211 11 1233333344444
Q ss_pred HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhh
Q 019654 115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 175 (337)
Q Consensus 115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~ 175 (337)
++ ......+++.++++.+++..+++.++.|+++++++++++|||+++.||.|..+.+.|++
T Consensus 199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 44 46788899999999999999999999999999999999999999999999999999974
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.70 E-value=7.1e-07 Score=74.26 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--Ccccc-----cch
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLST-----TLD 105 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~---~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~--~~~~~-----~~~ 105 (337)
+++.+...+..+...+..|...++ .++..++.+..+.......+++++... ..++..... ..... +.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF--LLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHhhhhhhcchHH
Confidence 456677788888888888764432 346789999999999998888877653 222111000 00001 224
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 106 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 106 ~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
........+++....|...|..++++++.+.+++...|.+.+.++++++++|+++..++.|+.+.+.|+.+-
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 445667778888999999999999999999999999999999999999999999999999999999998764
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.62 E-value=3e-07 Score=72.58 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 178 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~ 178 (337)
++|..+..+.-.+++++|.+.+..+.++.++.+++++++++|||++++||+|+.+..+|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5578889999999999999999999999999999999999999999999999999999998875
No 43
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.58 E-value=7.2e-07 Score=71.02 Aligned_cols=124 Identities=16% Similarity=0.271 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHHHHHH
Q 019654 202 LLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 281 (337)
Q Consensus 202 ~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~ 281 (337)
++||.+.++.|+..++.+ +. ..+.+....+.+ ..+.....+..+..+.. ...........++..+++..+..+.+
T Consensus 1 ~~~a~~~~~~k~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS--PL-SITFWRFLIAGI-LLILLLILGRKPFKNLS-PRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC--HH-HHHHHHHHHHHH-HHHHHHhhccccccCCC-hhhhhhhhHhhccceehHHHHHHHHH
Confidence 468889999999998754 23 233333333333 22222221111101000 00011112222223455556677788
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 282 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
++.+.........++|+++.++++++++|++++.+++|..+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9988888889999999999999999999999999999999999998764
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.54 E-value=1.2e-06 Score=69.30 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCC-chHHHHHHHHHHHHHHHHHHHH-HhcchhhhhccccccchHHHHHHHHH--
Q 019654 194 WIMAIVMALLSGFAGVYTEAIMKKRPSR-NINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFHGYSFITVLMILN-- 269 (337)
Q Consensus 194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~-- 269 (337)
..+.+++++++++..++.|--.++.++. ...+++.. ...+.....+ ...++...+ .+...|+.+..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiV----i~~~l~~v~~~~g~~~~~~~------~~~k~~lflilSG 74 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIV----ILIFLLIVLLVTGNWQAGGE------IGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHH----HHHHHHHHHHhcCceecccc------cCcceehhhhHHH
Confidence 5678999999999999998777765531 11222222 1112221111 122222111 12223333222
Q ss_pred --HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 270 --HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 270 --~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
.+++.++..+.+|..++....+.+.+++++++++|++++||++|..+++|..+|..|..+..
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 23333455556677677777788999999999999999999999999999999999987654
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.50 E-value=3.3e-06 Score=78.43 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 108 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 108 ~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
|..+. +++.+.+.+.+.|+.+.|++..+=+.....++.++++..++|||+++++|.|..+.++|..++..
T Consensus 53 W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 53 WWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 34444 34678899999999999999999999999999999999999999999999999999999976553
No 46
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.42 E-value=8.3e-06 Score=77.58 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccC---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----Ccc-cccc
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAG---KYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TD-D----NRL-STTL 104 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~---~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~-~~-~----~~~-~~~~ 104 (337)
+.+..++..+.++...+..|...++. ++++++.+.......++.++++|+.. ..+... .. . ... ...+
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~--~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL--FFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHhhhcccccch
Confidence 46777888999999999998754321 12466776666556677777777652 111100 00 0 000 0011
Q ss_pred hh-hhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654 105 DE-VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 178 (337)
Q Consensus 105 ~~-~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~ 178 (337)
.. +......++.|.++|.+.|.+++++++.++++....+|+++.++++++++|+++..|++|..+.+.|+.+.+
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11 123344566788999999999999999999999999999999999999999999999999999999998754
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.42 E-value=1e-05 Score=74.99 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
..++.++..+.|+...+..|...+ ++++.... ...++..++..++. ...... . ..++.........+
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~~-~~~~~~~~~l~~~~---~~~~~~-~----~~~~~~~~~~l~lg 215 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGA----EHGPATVA-IGSLIAALIFVPIG---ALQAGE-A----LWHWSILPLGLAVA 215 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cCCchHHH-HHHHHHHHHHHHHH---HHccCc-c----cCCHHHHHHHHHHH
Confidence 357778888999999999887642 34454443 33344444444444 221110 0 11222211112233
Q ss_pred HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
++ -.++..+++.++++++++.++++..++|++.+++++++++|+++..|++|..+.++|++.....
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 33 3567778999999999999999999999999999999999999999999999999999887543
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.40 E-value=2e-05 Score=63.89 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHH
Q 019654 192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA 271 (337)
Q Consensus 192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a 271 (337)
.|.++++.+.++.+.+.+..|+-.++.++.+.. . .. ........ + .....++.++..+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~----~~--~~~~~~~~-~------------p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---W----DF--IAALLAFG-L------------ALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---h----HH--HHHHHHHh-c------------cHHHHHHHHHHHH
Confidence 478889999999999999998887765431110 0 00 00100000 0 0124555555666
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 272 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVF--LFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~--lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
+...+..+++++.+.....+.......+..+.++. +|||++|+.+++|.++|+.|+++.++++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 66677788888887777776666666677777774 8999999999999999999998877443
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.40 E-value=1.1e-05 Score=74.78 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
..++.++..+.|+...+..|...+ ++++.+..+. ...++..+... . .+.. . ...++.........+
T Consensus 157 G~~~~l~aa~~~A~~~v~~k~~~~----~~~~~~~~~~---~~~~~l~~~~~--~-~~~~-~---~~~~~~~~~~l~~~~ 222 (295)
T PRK11689 157 SYGLAFIGAFIWAAYCNVTRKYAR----GKNGITLFFI---LTALALWIKYF--L-SPQP-A---MVFSLPAIIKLLLAA 222 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC----CCCchhHHHH---HHHHHHHHHHH--H-hcCc-c---ccCCHHHHHHHHHHH
Confidence 357788889999999999987642 2344443221 11122222111 2 1110 1 111233332333344
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
+.-.+...+++.+++++|++..+++....|++.+++++++++|+++..||+|.++.+.|+.+...
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 44466788999999999999999999999999999999999999999999999999999987754
No 50
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.39 E-value=1.9e-06 Score=80.21 Aligned_cols=141 Identities=9% Similarity=0.024 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccc-----ccchhhh
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLS-----TTLDEVI 108 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~-~~~-----~~~~~~~ 108 (337)
+.+..++..+.|+...+..|...++ +++++.+..+.....+.+..+|+.. .. ++..... ... .......
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAF--IT-EGPPFLPHGFMQAISGVNVTKIY 220 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHH--HH-cchHHHHHHHHHhhcccCchHHH
Confidence 4577788888999998888765431 3578888888888777777777652 11 1110000 000 0111111
Q ss_pred h-hhHHHH-HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 109 V-YPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 109 ~-~~i~al-l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
. ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|..+.++|+.+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 223333 35566778889999999999999999999999999999999999999999999999999988654
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.39 E-value=9.8e-06 Score=75.08 Aligned_cols=135 Identities=15% Similarity=0.039 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
..+..++..+.|+...+..|.... +. +.........+...+..++. ..... ... ...+.+........+
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~-~~~~~~~~~~i~~l~ 219 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPL----PV-GMMAGAAEMLAAGVVLLIAS---LLSGE--RLT-ALPTLSGFLALGYLA 219 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----Cc-chHHHHHHHHHHHHHHHHHH---HHcCC--ccc-ccCCHHHHHHHHHHH
Confidence 356777788899988888776532 11 23333344444444444443 22111 100 111223322333334
Q ss_pred HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
+. -.+...+++.++++++++..+++..+.|+++++++++++||+++..||+|..+.+.|+.+....
T Consensus 220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 43 3567789999999999999999999999999999999999999999999999999999887543
No 52
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.34 E-value=1.5e-05 Score=75.91 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 118 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 118 ~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
.+...++++++++++++.+++...+.|++++++++++++|++++.|++|.++.+.|+.++..+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 346667888999999999999999999999999999999999999999999999999998754
No 53
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.32 E-value=1.7e-05 Score=73.00 Aligned_cols=130 Identities=13% Similarity=0.133 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhc-chhhhhccccccchHHHHH--HHHHH
Q 019654 194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVMNKGFFHGYSFITVL--MILNH 270 (337)
Q Consensus 194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~i~~~ 270 (337)
..+.+++++++|...+.+||..++++. . + .+....+.+...+...... ...... . ...+..+. .....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~--~-~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--F--L-WWALLAHSVLLTPYGLWYLAQVGWSR---L-PATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--H--H-HHHHHHHHHHHHHHHHHhcccCCCCC---c-chhhHHHHHHHHHHH
Confidence 467889999999999999988776432 1 1 2222223333333222210 100000 0 00111111 11223
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
+.+..+..+.+++.+.....+..+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445556677888888888888999999999999999999999999999999999876543
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.25 E-value=0.0016 Score=61.32 Aligned_cols=167 Identities=11% Similarity=-0.017 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchhhhhhhHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPIP 113 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 113 (337)
.++.+++..++|++..+-.|..++..-+.|.- ..-++.+++.-. ....+. .+. . ..... .+.+.+..-.+.
T Consensus 8 G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~-~~g~~~--~~~-f---~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 8 GIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPW-LIAALL--LPD-F---WAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred HHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHH-HHHHHH--hhh-H---HHHHHhcCHHHHHHHHHH
Confidence 57889999999999999999876543333433 222233332110 011110 010 0 00111 233454455667
Q ss_pred HHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCC---c----HHHHHHHHHHHhhhhcccc----cC
Q 019654 114 AVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKL---S----EIQWAAFILLCCGCTTAQL----NS 181 (337)
Q Consensus 114 all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekl---s----~~qw~~l~l~~~Gv~lv~~----~~ 181 (337)
|++-.+.|..++.+++++..+. ..+-..++.+..+++..++++|=- + ..-..|+++..+|+.+... .+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 7888899999999999999984 455668889999999999988532 3 3356778888889888776 32
Q ss_pred CCCc----ccccchhHHHHHHHHHHHHHHHHH
Q 019654 182 NSDR----VLQTPLQGWIMAIVMALLSGFAGV 209 (337)
Q Consensus 182 ~~~~----~~~~~~~G~~l~l~a~~~~a~~~v 209 (337)
..++ +..+...|+..++++.+.+++++.
T Consensus 160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred cccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 2111 123456799999999999999883
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.05 E-value=0.00016 Score=67.25 Aligned_cols=142 Identities=11% Similarity=0.021 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-ccccchhhhhhhHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPIPA 114 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~a 114 (337)
-++.++..+.|+...+..|...+.. .+.......+....+..+....... ..+........ ...++..+......+
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASL--ILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHH--HhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4667778889999999988653211 1112222233222222221111110 11111000000 011223332233333
Q ss_pred HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
++ -.+...+++.++++++++..+.+..+.|++.+++++++++|+++..||+|..+.++|+.+...+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 33 2457778889999999999999999999999999999999999999999999999999887654
No 56
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.02 E-value=0.00028 Score=65.49 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=86.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhc-chhhhhccccccchHHHH--H
Q 019654 189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVMNKGFFHGYSFITV--L 265 (337)
Q Consensus 189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 265 (337)
+...|+.++++++++||...++.|.. .+. ++......-..++.++..+...... .++... . ........+ .
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~---~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV---PADEILTHRVIWSFFFMVVLMSICRQWSYLKT-L-IQTPQKIFMLAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-H-HcCHHHHHHHHH
Confidence 44679999999999999999999653 332 2322222223334433333222211 111100 0 001111111 2
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 266 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 266 ~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
..+..++...+..+.+++.+........++.|+++.++++++++|+++..+++|.++.+.|+.+.
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 22233344556667778888888888899999999999999999999999999999999998754
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.00 E-value=4.1e-05 Score=62.05 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~--~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
++|.++..+...+++..|++.+.-+.+..+..+++.++. ++||+++..||+|+.+.++|+.++..+
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 447889999999999999999999999998888888885 899999999999999999999998754
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.99 E-value=0.00018 Score=67.04 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
+++++++..+..+.+.+..+...+ +++.++.+.++...++++.+..+........+..+..+...+++.........+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 367788888888888888865443 256778999999999988877665521001111111111112223333445555
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
+.....+...+.-.+..++.+.+++..++-+++.+++..++++++++.||.|+++.+.|..+-..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 656666677777889999999999999999999999999999999999999999999999876543
No 59
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.90 E-value=0.00074 Score=61.16 Aligned_cols=135 Identities=12% Similarity=0.158 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH-hcchhh-hhccccccchHHHHH--HH
Q 019654 192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAV-MNKGFFHGYSFITVL--MI 267 (337)
Q Consensus 192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~--~i 267 (337)
.|..++++++++|+...+..|. ..+. ++......=..++.++..+.... .+++.. ............... ..
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~---~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL---PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC---CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 3788999999999999999986 3332 23222222223333332222211 111110 000000000111111 11
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 268 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 268 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
+..++...+..+.+++.+........++.|++++++++++++|+++..+++|.++.+.|+.+.
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 123334455566678877777778889999999999999999999999999999999998654
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.86 E-value=0.00014 Score=57.91 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 111 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 111 ~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
.+.-++|.++..+...+++++|.+.+..+ .....+.+++.+.+++||+++..|++++.+.++|++.+...
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34445688899999999999999977766 57999999999999999999999999999999999888653
No 61
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.83 E-value=0.00018 Score=56.54 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 113 PAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 113 ~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
.-++|.++..+...+++++|.+.+..+ .....+.+++.+++++||++++.|+.|+.+.++|++.+..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 335578888888999999999977666 6789999999999999999999999999999999998854
No 62
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.79 E-value=0.00037 Score=64.53 Aligned_cols=131 Identities=10% Similarity=0.010 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
..+..++..+.++...+..|... ++|.+.++....--++.+..+.. .+++. ++. ..+..+...+.|
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~--~~~-----~~~~~~~~~~~G 218 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNL-GHILA--KPL-----KKYAILLNILPG 218 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHH-HHhcc--cch-----HHHHHHHHHHHH
Confidence 35666777888888888888652 55655544333211111111110 02111 111 112223344477
Q ss_pred HHHHHHHHHHHHHHh-cCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHhhhhcccc
Q 019654 115 VLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL 179 (337)
Q Consensus 115 ll~~~~~~l~f~al~-~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw----~~l~l~~~Gv~lv~~ 179 (337)
+...+.+.+++.+.+ +.+++.+.++.+..|+..++++++++||+.+++|+ +|.++...|+.++..
T Consensus 219 i~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 219 LMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 777888999999999 99999999999999999999999999999999999 999999999887653
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.78 E-value=0.00024 Score=55.31 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654 112 IPAVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 178 (337)
Q Consensus 112 i~all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~ 178 (337)
+.-++|..+..+.-.+++.+|.++ |.+-.....+.+++.+++++||++++.|+.++.+...|++.+.
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 334557888899999999999995 5556679999999999999999999999999999999998874
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.0002 Score=55.32 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 111 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 111 ~i~all~~~~~~l~f~al~~l~~~-~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
.+.-+.+..+..+.-.|++++|.+ .|.+-.....+.+++.+++++||+++..|++++.+..+|++.+..
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 333455778888888999999999 566777899999999999999999999999999999999987643
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.76 E-value=0.00022 Score=55.81 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 111 PIPAVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 111 ~i~all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
.+.-+.|.++..+.-.+++++|.++ |.+-.....+.+++.+.+++||++++.|+.++.+.+.|++.+
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3334557888889999999999995 556667899999999999999999999999999999999876
No 66
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.72 E-value=0.00084 Score=60.91 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
.++.++...+.+..-.++.|+.. .++.+. ++-+.++.++...++. ...++ + .+.+..|+ -.+.|
T Consensus 139 gi~~Ll~stigy~~Y~~~~~~~~------~~~~~~-~lPqaiGm~i~a~i~~--~~~~~--~-~~~k~~~~----nil~G 202 (269)
T PF06800_consen 139 GILALLISTIGYWIYSVIPKAFH------VSGWSA-FLPQAIGMLIGAFIFN--LFSKK--P-FFEKKSWK----NILTG 202 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CChhHh-HHHHHHHHHHHHHHHh--hcccc--c-ccccchHH----hhHHH
Confidence 35667777777777777777753 344433 4456666666555442 11111 1 11123344 46788
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI 168 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~ 168 (337)
+++.+.|.+++++.+....++...+.|+.++..++-+.++||||=+++++..+.
T Consensus 203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 999999999999999999999999999999999999999999999999886554
No 67
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.66 E-value=0.00048 Score=54.32 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
++...+..+++++.+........+++++++.++|+++|||++|+.+++|.++++.|+.+..
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344556677787776666666668999999999999999999999999999999987654
No 68
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=0.0025 Score=57.99 Aligned_cols=131 Identities=20% Similarity=0.155 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFL-VETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~-re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
.++.++..+.++...+..|... +.++....+. ..........+.. ... . + ....++........+
T Consensus 156 ~~~~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~--~---~~~~~~~~~~~~~~g 221 (292)
T COG0697 156 LLLALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFF---LSG-F--G---APILSRAWLLLLYLG 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHH---hcc-c--c---ccCCHHHHHHHHHHH
Confidence 4666777888887777777553 2333343332 2111112222222 111 1 0 112233444455555
Q ss_pred HHHH-HHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll~~-~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
++.. ....+.+.+++..+++..+.+..+.|++.+++++++++|+++..++.|..+.+.|+.+....
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5544 58889999999999999999999999999999999999999999999999999999887643
No 69
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.64 E-value=0.00055 Score=63.63 Aligned_cols=116 Identities=13% Similarity=0.171 Sum_probs=83.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHH
Q 019654 189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL 268 (337)
Q Consensus 189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 268 (337)
+..+|..+.+.++++.+.+.+++||-.++.+..+..... . .. +.. .++..|..++
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~------~~----------------~~l--~~~~W~~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G------GR----------------SYL--RRPLWWIGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h------hh----------------HHH--hhHHHHHHHH
Confidence 567899999999999999999999987765421110000 0 00 000 0233344444
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654 269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l 329 (337)
..+++...-...+.+++.....+...++.+++.+++..+++|+++...++|.++++.|..+
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 4455555444566678888889999999999999999999999999999999999999754
No 70
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.60 E-value=0.0017 Score=51.28 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 272 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
.......+..++.++ .......+.|+++.++|+++++|+++...++|.++++.|+.+...++
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 444556667788775 55567788999999999999999999999999999999998765443
No 71
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.50 E-value=0.0013 Score=52.39 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654 271 ALSGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~ 336 (337)
++.-.+.+.++|+.+-... ...+....+.+.++|+++|||++|+.+++|.++|+.|+...+...++
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3444556666776543332 23345678889999999999999999999999999999877755444
No 72
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0036 Score=55.61 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=86.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH-
Q 019654 38 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL- 116 (337)
Q Consensus 38 ~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all- 116 (337)
+.+..-.+|+.-.+..|-.-+ .-+-.+.+-....++.++.+|+- ..+.+. .+ .++.-+..-...+++
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g~----~~~g~~g~a~gm~vAaviv~Pig---~~~ag~----~l-~~p~ll~laLgvavlS 219 (292)
T COG5006 152 LALGAGACWALYIVLGQRAGR----AEHGTAGVAVGMLVAALIVLPIG---AAQAGP----AL-FSPSLLPLALGVAVLS 219 (292)
T ss_pred HHHHHhHHHHHHHHHcchhcc----cCCCchHHHHHHHHHHHHHhhhh---hhhcch----hh-cChHHHHHHHHHHHHh
Confidence 344456678887777755431 22334556666777777788877 333221 11 122211111111222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654 117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 178 (337)
Q Consensus 117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~ 178 (337)
-.+-..+-.++++++|..++.++.+..|.+.++..+.+|+|.+|..||+++....++.+=..
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 23455677789999999999999999999999999999999999999999998887776433
No 73
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0011 Score=60.88 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
+.+.+.....|.|+.+-|++..+-+.++..+..++++..+||||++....+|..+.++|-.++...
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 346889999999999999999999999999999999999999999999999999999997666543
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.33 E-value=0.00049 Score=64.01 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCcccccch-hhhhhhH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL-AALARIWNHEGVTDDNRLSTTLD-EVIVYPI 112 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 112 (337)
++....+..+..+.+-++.|....+.+++.++.+......-+.+++.+ |+.. ..++..........|. +......
T Consensus 164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 164 GFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccchhhHHHHH
Confidence 457777788889999999987664445778888887777667777777 7662 2222111000111121 2344555
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
.++++...|...|..+.+++|-++++....|=+++...++++++|++++.|..|.++..+|+.+-..
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999987643
No 75
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.30 E-value=0.0011 Score=50.50 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcCChhHH-HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 019654 115 VLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 169 (337)
Q Consensus 115 ll~~~~~~l~f~al~~l~~~~~-~ll~~~~pl~talla~~~Lkekls~~qw~~l~l 169 (337)
.+|..+..+.-.+++++|.+.+ .+......+.+++.+.+++||+++..||.|+.+
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3578888999999999999966 455679999999999999999999999999876
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.21 E-value=0.0046 Score=48.60 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 275 IAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
.+.+.++|+.+-... ..-+....+.++++|+++|||++|+.+++|..+|+.|+...+...
T Consensus 45 ~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344555655432222 223445778889999999999999999999999999998776543
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.94 E-value=0.0028 Score=49.82 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 109 ~~~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
+|.+|=++|-..+..+|+.+...|.+.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.++|+.+.
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3677778899999999999999999977766 69999999999988888888999999999999999764
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.011 Score=45.70 Aligned_cols=62 Identities=29% Similarity=0.289 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 271 ALSGIAVSMVMKYADN-IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
.+...+.+..+|+.+- +.-+.-+....+.+++.|+++|||++|+..++|..+++.|+..-+.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3344556667776542 2233455667889999999999999999999999999999986554
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.77 E-value=0.019 Score=44.65 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 272 LSGIAVSMVMKYADN-IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 272 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
+...+.+.++|..+- +.-+.-+....+.+.++|+++|||++|+.+++|..+++.|+..-+.
T Consensus 41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 333445556665432 2223445567788999999999999999999999999999987653
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.72 E-value=0.02 Score=44.83 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 272 LSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 272 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
+...+.+.++|+.+-. .-..-+....+.+.++|+++|||++|+.+++|..+|+.|+..-+
T Consensus 47 ~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 47 AAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3344556666664422 22334456678889999999999999999999999999997653
No 81
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.55 E-value=0.11 Score=49.00 Aligned_cols=137 Identities=13% Similarity=0.008 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 116 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all 116 (337)
++++...++++.+.+.-+..- ++.++.+..-+-.+++++++.+.....-++ + .....-+++....+..-+++
T Consensus 171 ll~l~~a~lya~~nV~~E~~v----~~~~~~~~lg~~Glfg~ii~~iq~~ile~~-~---i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 171 LLALLGAILYAVSNVLEEKLV----KKAPRVEFLGMLGLFGFIISGIQLAILERS-G---IESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHHHHHHHHHheehh-h---hhccCCChhhHHHHHHHHHH
Confidence 666777888888888877643 235566666666677777766544211111 1 11111122222111111222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
-+....+.-..+++.+|+..++=.-+..+...++..++.|+++++..++|.++..+|+++....+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 23333344567888999989998899999999999999999999999999999999999886543
No 82
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.04 Score=50.37 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhHHHHHH-HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-ccccchhhhhhhH
Q 019654 35 SAIVTLALTVLTSSQAILI-VWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPI 112 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~-k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 112 (337)
.+.++....++.+....-- +.-+ ++..++...++-.++...+....-+ ..+....+... ...++.-.+-+.+
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~---~~k~s~~~mM~~vNLf~~i~~~~~l---i~qg~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 173 GILLLFGYLLFDGFTNATQDSLFK---KYKVSSLHMMFGVNLFSAILNGTYL---ILQGHLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred hHHHHHHHHHHHhhHHhHHHHHhc---cCCccHhHHHHHHHHHHHHHHHHhh---hcCCCCchHHHHHHcChhHHHHHHH
Confidence 3666666655554433222 2222 4667889999988888776655443 22211111111 1223322222445
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654 113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 176 (337)
Q Consensus 113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l 176 (337)
.+.+.++...+.|+-++.-.+-+.+.+.-+.=++..+++.+..+.++++.||.|+.+.|.|...
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 5566688888888899888888999999999999999999999999999999999998888765
No 83
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.38 E-value=0.059 Score=47.64 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654 111 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 176 (337)
Q Consensus 111 ~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l 176 (337)
....++......+....+++.++.+.+....+.++++++++.++++|+++..||.|..+.+.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344455677888889999999999999999999999999999999999999999999999998753
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.37 E-value=0.39 Score=39.31 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHH
Q 019654 194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS 273 (337)
Q Consensus 194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~ 273 (337)
.++.+.+..+-++++..+-++.++..+ ++.-...-...+.+...+.....+..+.. .....+++.|+.-+..+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs--~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGS--PLVASFISFGVGFILLLIILLITGRPSLA---SLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHHhcccccc---hhccCChHHhccHHHHHHH
Confidence 456778888888888898888877652 33333333444555554444332221111 1222345555432332222
Q ss_pred hHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHhhh
Q 019654 274 GIAVSMVMKYADNIVKVYSTS-VAMLLTAVVSVF-LF---GFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 274 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~lls~~-lf---ge~~t~~~~~G~~lV~~gv~l 329 (337)
-....+.....+......... -+.+.+.+++.+ +| .+++|+..++|.++++.|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 233344445554444333322 345567777765 33 578999999999999999864
No 85
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.29 E-value=0.17 Score=46.23 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=93.9
Q ss_pred HHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHH
Q 019654 39 TLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYL 118 (337)
Q Consensus 39 ~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~ 118 (337)
.+.+++.++.-+.+-|..+ .++.+...+..+.-+..++..+. +-....+ --..........+...|..-+
T Consensus 153 al~la~sf~~Ygl~RK~~~------v~a~~g~~lE~l~l~p~al~yl~--~l~~~~~--~~~~~~~~~~~LLv~aG~vTa 222 (293)
T COG2962 153 ALALALSFGLYGLLRKKLK------VDALTGLTLETLLLLPVALIYLL--FLADSGQ--FLQQNANSLWLLLVLAGLVTA 222 (293)
T ss_pred HHHHHHHHHHHHHHHHhcC------CchHHhHHHHHHHHhHHHHHHHH--HHhcCch--hhhcCCchHHHHHHHhhHHHH
Confidence 3445666777777777764 44666666655555555555442 2221110 001123445555666666667
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 119 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 119 ~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
+--.++-.|-+++|.++.-++.+..|...-+++.+++||+++..|+.+-+..-+|+++...+
T Consensus 223 vpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 223 VPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999999999999999887653
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.27 E-value=0.04 Score=43.36 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHHH
Q 019654 199 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS 278 (337)
Q Consensus 199 ~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~ 278 (337)
+-+++|++.+-+.||-.+..+....-.+ ... .... . +. ++..+...+.+..|.....
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~-~~~---~~~~----L-l~--------------n~~y~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASLQ-LLQ---EIKF----L-LL--------------NPKYIIPFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchHH-HHH---HHHH----H-HH--------------hHHHHHHHHHHHHHHHHHH
Confidence 3467899999999998876553211111 100 0000 1 11 1222223334444445555
Q ss_pred HHHHHhhHHHHHH-HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654 279 MVMKYADNIVKVY-STSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 329 (337)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l 329 (337)
+.+..+|-....+ ++.++.+++++.|+++.+|..+...++|..+|+.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 5666666555555 46888999999999998999999999999999999875
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.0009 Score=59.14 Aligned_cols=265 Identities=13% Similarity=0.151 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 115 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al 115 (337)
++..++-++.|++.+.+.. .-|+.++++.--+-+. ++++++.... ..+ + ..+++.+..-.+.|.
T Consensus 4 ~liaL~P~l~WGsip~v~~---k~GG~p~qQ~lGtT~G---ALifaiiv~~--~~~----p----~~T~~~~iv~~isG~ 67 (288)
T COG4975 4 LLIALLPALGWGSIPLVAN---KFGGKPYQQTLGTTLG---ALIFAIIVFL--FVS----P----ELTLTIFIVGFISGA 67 (288)
T ss_pred HHHHHHHHHHhcccceeee---ecCCChhHhhhhccHH---HHHHHHHHhe--eec----C----ccchhhHHHHHHhhh
Confidence 4566677899999887742 2234556655444444 3444443331 111 1 123455545566777
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHhhhhcccccCCCCcc---c
Q 019654 116 LYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSNSDRV---L 187 (337)
Q Consensus 116 l~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw----~~l~l~~~Gv~lv~~~~~~~~~---~ 187 (337)
+-......+|-|.+++..+.+.=+ ..++.+-+.+++++.++|--+..|. .|+++...|+.+-..++..+.+ .
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~ 147 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENP 147 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccCh
Confidence 788899999999999988866544 4678888999999999998888775 5777888888877665432211 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH
Q 019654 188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI 267 (337)
Q Consensus 188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 267 (337)
++.-.|+...+.+.+.+-.+.+..+... -+.-+.+..|.+ |.++..+..-....+.. .+-.+|.-+
T Consensus 148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~-v~g~saiLPqAi-----GMv~~ali~~~~~~~~~--------~~K~t~~ni 213 (288)
T COG4975 148 SNLKKGIVILLISTLGYVGYVVLFQLFD-VDGLSAILPQAI-----GMVIGALILGFFKMEKR--------FNKYTWLNI 213 (288)
T ss_pred HhhhhheeeeeeeccceeeeEeeecccc-ccchhhhhHHHH-----HHHHHHHHHhhcccccc--------hHHHHHHHH
Confidence 2344677777778887777766665432 111112222322 33333333221111111 122233322
Q ss_pred H---HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHhhhc
Q 019654 268 L---NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAF----FLGSIVVSVSVYLH 330 (337)
Q Consensus 268 ~---~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~----~~G~~lV~~gv~ly 330 (337)
. .-+++++.+.+.-...+....-..+....+++.+=|+++++|+=|..+ ++|..+++.|..+.
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 2 234455443332222111111112234457888889999999988765 67888887776543
No 88
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.98 E-value=0.025 Score=50.86 Aligned_cols=130 Identities=10% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 116 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all 116 (337)
++.+.-+++.++..++.|+.-++.++-.+.+--. ++.++.++... ..-+ ...+++.+|+.+.+...|+.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~----~i~lV~s~I~~----~~ig---~~~lP~cgkdr~l~~~lGvf 262 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFS----LITLVVSLIGC----ASIG---AVQLPHCGKDRWLFVNLGVF 262 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHH----HHHHHHHHHHH----hhcc---ceecCccccceEEEEEehhh
Confidence 6667778888888899888743322222222212 23333333322 1111 12344566777778888888
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
.++...+.-.|+|.=-++-.++...+..++..+.-..++|+-.+.+.|.|.++.+...+.+
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 8999999999999999999999999999999999999999999999998866554444433
No 89
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.49 E-value=0.079 Score=40.23 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654 273 SGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 323 (337)
Q Consensus 273 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV 323 (337)
.-.+.+.++|+.+-... ...+....+.+.++|+++|||++|+.+++|..+|
T Consensus 42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33455666776554433 2344567888999999999999999999999886
No 90
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.76 E-value=1.5 Score=41.49 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=55.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHH---Hh-hhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHhh
Q 019654 104 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG 173 (337)
Q Consensus 104 ~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~l---l~-~~~pl~talla~~~Lkekls------~~qw~~l~l~~~G 173 (337)
+|+.....+.|+....+|.+++.+-+.++.+.... +. |+..++.++-.. ++||+=+ +.-++++++.++|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 46656668888999999999999998885443333 55 777777777666 6999887 4457777778888
Q ss_pred hhcccc
Q 019654 174 CTTAQL 179 (337)
Q Consensus 174 v~lv~~ 179 (337)
..++..
T Consensus 336 ~~lig~ 341 (345)
T PRK13499 336 ANIVGL 341 (345)
T ss_pred HHHHhh
Confidence 777654
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.68 E-value=2 Score=35.11 Aligned_cols=121 Identities=16% Similarity=0.048 Sum_probs=72.5
Q ss_pred HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchhhhhhhHHHHHHHH
Q 019654 41 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPIPAVLYLV 119 (337)
Q Consensus 41 ~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~all~~~ 119 (337)
...++.+.|.-+.|... +|....++....+++++..+.. ..++. ...+.+ .+| .+...|++...
T Consensus 12 ~i~~q~~~N~~L~~~~g-------s~~~as~i~~~~G~i~~~i~~~--~~~~~--~~~~~~~~p~----w~~lGG~lG~~ 76 (138)
T PF04657_consen 12 LIALQAAFNGQLGKALG-------SPLVASFISFGVGFILLLIILL--ITGRP--SLASLSSVPW----WAYLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHHH--Hhccc--ccchhccCCh----HHhccHHHHHH
Confidence 34455555554444432 2566666666666665544442 22221 111121 122 22335566666
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhHHHHHHHHH-HH----HhcCCCcHHHHHHHHHHHhhhhc
Q 019654 120 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLY-RI----ILKKKLSEIQWAAFILLCCGCTT 176 (337)
Q Consensus 120 ~~~l~f~al~~l~~~~~~ll~~~~pl~talla-~~----~Lkekls~~qw~~l~l~~~Gv~l 176 (337)
.-.+..+....+.++...++.-+.-+..+++- .+ .-|++++++|.+|+++..+|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 66777778899999977777666555555544 33 46799999999999999999864
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.058 Score=47.61 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654 110 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 176 (337)
Q Consensus 110 ~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l 176 (337)
....++...+...+.|.-..+..|-+.+++..+.-+||.+.++++++..++.+||+|..+.|.|...
T Consensus 244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4455566677888889899999999999999999999999999999999999999999999999865
No 93
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.44 E-value=0.2 Score=45.21 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
++.+.+....+++.|+..-.......+++++++++++++.+++..||++..+...|+.+...++.
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34455566778888988888888889999999999999999999999999999999987765443
No 94
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=5.7 Score=32.90 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHH
Q 019654 191 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNH 270 (337)
Q Consensus 191 ~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (337)
.+..+..+++..+..+++...-++.|..++ +... ...-...|+..........+..... ......+++.|..-
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~s-pl~A-s~isf~vGt~~L~~l~l~~~~~~~~--a~~~~~pwW~~~GG--- 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGS-PLLA-SLISFLVGTVLLLILLLIKQGHPGL--AAVASAPWWAWIGG--- 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCC-hHHH-HHHHHHHHHHHHHHHHHHhcCCCch--hhccCCchHHHHcc---
Confidence 345677788888889999999888877653 3322 1111222333222222222221111 11122344454432
Q ss_pred HHHhHHHH---HHHHHhhHHH-HHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHhhhccCCC
Q 019654 271 ALSGIAVS---MVMKYADNIV-KVYSTSVAMLLTAVVSVF-LFG---FHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 271 a~~g~~~~---~~~~~~~~~~-~~~~~~~~~~~~~lls~~-lfg---e~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
.+|...+. ......++.. ......-+.+.+.+++.+ ++| .+++...++|+++++.|+++..+.+
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 22222221 1112222222 222223345566666655 333 6699999999999999977665544
No 95
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=0.1 Score=48.14 Aligned_cols=122 Identities=14% Similarity=0.205 Sum_probs=83.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHH
Q 019654 189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL 268 (337)
Q Consensus 189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 268 (337)
+...|.++.+.++++-+.+-+..+|-.++... .. ....+. ..+++ ..+..|..++
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----~~----------------~ra~~g--g~~yl--~~~~Ww~G~l 72 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----SG----------------LRAGEG--GYGYL--KEPLWWAGML 72 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----hc----------------ccccCC--Ccchh--hhHHHHHHHH
Confidence 45678888888888777777777776655321 00 001100 01112 2345666677
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh-hccCCCC
Q 019654 269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY-LHSAGKL 335 (337)
Q Consensus 269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~-ly~~~~~ 335 (337)
..++|-..-...+-+++++..++..+++.+.+++++..+++|++++.-.+|.++.+.|.. +....|+
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 777776655555567899999999999999999999999999999999999999888864 4434433
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.90 E-value=0.85 Score=40.15 Aligned_cols=112 Identities=9% Similarity=0.089 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc--ccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhh
Q 019654 64 YSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS--TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN 141 (337)
Q Consensus 64 ~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~ 141 (337)
+-....+|..+++.+.+.+.+-. .-+ .+++. .+. .....+..+.+.|++-+.-+.+.-+-..-++.++++++..
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~--~~e-dws~~-n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGA 258 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSF--LFE-DWSPG-NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGA 258 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHH--Hhc-cCCcc-hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHH
Confidence 44567789999987665444332 122 22221 111 1122344677778777777777778888899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 142 LNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 142 ~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
++-...++-..++++|+.+.....+++++++..++-..
T Consensus 259 LNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 259 LNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred hhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776543
No 97
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=1.2 Score=41.24 Aligned_cols=143 Identities=10% Similarity=-0.042 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCcccccchhhhhhhHH
Q 019654 35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG-VTDDNRLSTTLDEVIVYPIP 113 (337)
Q Consensus 35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~ 113 (337)
+|.....-.+..+...+..|..-+. .+......++...++.+.......+. .-+.. .........+..-+..+.+.
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~--~~l~~~~lv~yNnl~~L~~l~~~~~~-~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDS--ANLNKFGLVFYNNLLSLPPLLILSFI-TGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc--ccccceeEEeehhHHHHHHHHHHHHH-hcchHHHHhhcccccchhHHHHHHHH
Confidence 4677777777777777777764432 23456667777777766544333211 11100 00000001112233456777
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 114 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 114 all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
+++.+.-+.+.+...+..++.++++...-+...|.+-..++.+++.++....|+.++++|-++-+..
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 7778889999999999999999999998888888888888889999999999999999998876653
No 98
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=89.31 E-value=0.18 Score=44.98 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHH
Q 019654 71 FLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVL 150 (337)
Q Consensus 71 f~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~tall 150 (337)
++-+.++++++...+. .++ . +++ ..|+.+.-.+||+.....|..+++|-+....++.--+.|+..+..++-
T Consensus 182 iLPqAiGMv~~ali~~--~~~-~--~~~----~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiG 252 (288)
T COG4975 182 ILPQAIGMVIGALILG--FFK-M--EKR----FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIG 252 (288)
T ss_pred hhHHHHHHHHHHHHHh--hcc-c--ccc----hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecc
Confidence 3445566666655551 222 1 111 124445567899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q 019654 151 YRIILKKKLSEIQWAAFIL 169 (337)
Q Consensus 151 a~~~Lkekls~~qw~~l~l 169 (337)
..++||||=+++++..+..
T Consensus 253 GIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 253 GILFLGEKKTKKEMVYVII 271 (288)
T ss_pred eEEEEeccCchhhhhhhhh
Confidence 9999999999999876543
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=13 Score=30.83 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-cccchhhhhhhHHHHHHHH
Q 019654 41 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL-STTLDEVIVYPIPAVLYLV 119 (337)
Q Consensus 41 ~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~all~~~ 119 (337)
.+.++.+.|.=+.|+.+ +|....+.+...+..+...+.. . +++....... +.+| ...+.|++...
T Consensus 16 ~l~~Q~~iN~qL~~~~~-------spl~As~isf~vGt~~L~~l~l--~-~~~~~~~a~~~~~pw----W~~~GG~lGa~ 81 (150)
T COG3238 16 LLPLQAAINGRLARYLG-------SPLLASLISFLVGTVLLLILLL--I-KQGHPGLAAVASAPW----WAWIGGLLGAI 81 (150)
T ss_pred hhhhHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHHHHHH--H-hcCCCchhhccCCch----HHHHccchhhh
Confidence 34556666655555543 2555666666655554444432 2 2221111111 1122 22333444333
Q ss_pred HHHHHHHHHhcCChhHHH-HHhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHhhhhcccc
Q 019654 120 KNLLQYYIFAYVDAPGYQ-ILKNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 120 ~~~l~f~al~~l~~~~~~-ll~~~~pl~talla~~~L----kekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
+-...-.....+.+++.. ++...+.+.-.++=.+=+ +++++..++.|+++..+|+.+++.
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 333334456666666444 444555555554444333 389999999999999999766643
No 100
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=87.13 E-value=3.2 Score=37.87 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=41.2
Q ss_pred CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654 131 VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 178 (337)
Q Consensus 131 l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~ 178 (337)
.++-+.++.....=.+..++|...++..+++++|+|..+.|.|.++..
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 444566677778888899999999999999999999999999998764
No 101
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=86.90 E-value=4.8 Score=36.45 Aligned_cols=127 Identities=22% Similarity=0.160 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHH
Q 019654 193 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL 272 (337)
Q Consensus 193 G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 272 (337)
|.+..++|+++.+-..|=.||.-.. | ++..| ..+.....+.+.+..+..+.. .+.++..+.-..-+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g-D--g~~fQ-w~~~~~i~~~g~~v~~~~~~p---------~f~p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG-D--GFFFQ-WVMCSGIFLVGLVVNLILGFP---------PFYPWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC-C--cHHHH-HHHHHHHHHHHHHHHHhcCCC---------cceeHHHhhhhhhhc
Confidence 4566778888887666666544322 1 34333 222222222222222221110 112222222222334
Q ss_pred HhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH-HcCCcc-----hHHHHHHHHHHHHHhhhccC
Q 019654 273 SGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVF-LFGFHL-----SLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 273 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~lls~~-lfge~~-----t~~~~~G~~lV~~gv~ly~~ 332 (337)
++.+...++|..+ ++-..+-+.+..+.++..|-+ +||++. ++.-.+|+++++.|..+|..
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 5555555555544 222334455566666666644 676543 34568999999999887763
No 102
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=86.64 E-value=1.5 Score=33.85 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 293 TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 293 ~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
..++..+-+..+++.++|++++.++.|.+++++++++.
T Consensus 69 EvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 69 EVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34445555677888999999999999999999998754
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=85.06 E-value=14 Score=34.81 Aligned_cols=132 Identities=14% Similarity=0.240 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHH--HHHHHHHHHHHH---HHhcchhhhhccccccchH-H
Q 019654 189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL--YVFGMAFNAVAI---VIQDFDAVMNKGFFHGYSF-I 262 (337)
Q Consensus 189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~ 262 (337)
....|+++..+++++++...+=.||. |+-+ | ++.|+ .+++.++..... ..++..++- ...+. .
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----W-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~-----~~~~~~~ 72 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS----W-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIY-----SATPAST 72 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-----HhCChhH
Confidence 35689999999999999877777654 3322 2 22332 233433333222 122322211 11111 1
Q ss_pred HHHHH---HHHHHHhHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHhhhcc
Q 019654 263 TVLMI---LNHALSGIAVSMVMKYADNIV-KVYSTSVAMLLTAVVSVFLFG-------FHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 263 ~~~~i---~~~a~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~lls~~lfg-------e~~t~~~~~G~~lV~~gv~ly~ 331 (337)
.+... +.-+++++.....+||.+-.. .+++.-+..++.+++--++.| ++-....++|.++++.|+.+..
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 11112 234567777778888875332 334444455666666544433 2223467899999999987654
No 104
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=83.34 E-value=29 Score=33.17 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654 37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLV--ETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 114 (337)
Q Consensus 37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~r--e~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 114 (337)
++.++-++.++.-.++.|.--.+++...+.- .|+. .++.+++..|.+...-+- + .++-.+++.. ++....+.+
T Consensus 250 llaL~sA~~YavY~vllk~~~~~eg~rvdi~--lffGfvGLfnllllwP~l~iL~~~-~-~e~F~lP~~~-q~~~vv~~~ 324 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVLLKRKIGDEGERVDIQ--LFFGFVGLFNLLLLWPPLIILDFF-G-EERFELPSST-QFSLVVFNN 324 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccHH--HHHHHHHHHHHHHHhHHHHHHHHh-c-cCcccCCCCc-eeEeeeHhh
Confidence 4445556777777777765333322233322 2333 234455555433210111 1 1111122222 222233333
Q ss_pred HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
+. .+++.++.-.|.-.+++-+.++-...++...++.=.++-++++++.+++|-+..|.|.+++..+.
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 33 46788999999999999999999999988888877888899999999999999999998886643
No 105
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.82 E-value=7 Score=29.71 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 293 TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 293 ~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
..++..+-...|++.++|++.+.++.|..++.+|+++.-+
T Consensus 76 EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 76 EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 3344455667889999999999999999999999986543
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=78.27 E-value=22 Score=27.56 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhHHH-HHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhhhhc
Q 019654 109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQ-ILKNLNIISTGVLYRIILKKKLS-EIQWAAFILLCCGCTT 176 (337)
Q Consensus 109 ~~~i~all~~~~~~l~f~al~~l~~~~~~-ll~~~~pl~talla~~~Lkekls-~~qw~~l~l~~~Gv~l 176 (337)
.|.+|=+++-..+.++|.-+++.|.+.+. +-+++...||+++... |+|+.. ++-.+|..+.++|+.+
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhh
Confidence 46777777888999999999999988554 5567788899988776 566654 4456677777777654
No 107
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=74.27 E-value=16 Score=28.79 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=9.0
Q ss_pred ccccccccCCC
Q 019654 3 YRKIKDEDNDG 13 (337)
Q Consensus 3 ~~~~~~~~~~~ 13 (337)
|..|++||+|.
T Consensus 1 y~~l~~~d~d~ 11 (115)
T PF05915_consen 1 YSNLSNEDEDD 11 (115)
T ss_pred CCCCCCCCccc
Confidence 67888888886
No 108
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=71.74 E-value=65 Score=30.05 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=63.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654 104 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 104 ~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~ 179 (337)
+|.....+.+|.+-++--...|.=+..++.-+.++..-.+-+.|.+++..+++++++-..|.|+.+...|+..-..
T Consensus 240 ~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 240 LRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 3444456666766666666777777888888999999999999999999999999999999999999999988743
No 109
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=68.78 E-value=74 Score=28.86 Aligned_cols=123 Identities=9% Similarity=-0.032 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCCCCcccccchhhhhhhH
Q 019654 36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKC---ALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 112 (337)
Q Consensus 36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l---~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 112 (337)
|+.++..++.++++.+=+|..... ++ +++.+..+. +.++.... .++. ++ +.. .-.+
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~~~g-----Dg---~~fQw~~~~~i~~~g~~v~~--~~~~-----p~----f~p--~aml 60 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKFDTG-----DG---FFFQWVMCSGIFLVGLVVNL--ILGF-----PP----FYP--WAML 60 (254)
T ss_pred chhHHHHHHHhcccceeeEeccCC-----Cc---HHHHHHHHHHHHHHHHHHHH--hcCC-----Cc----cee--HHHh
Confidence 678888999999999988865321 12 333333322 22222221 2211 11 111 1234
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHH-H-HhcC--C---CcHHHHHHHHHHHhhhhcccc
Q 019654 113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-I-ILKK--K---LSEIQWAAFILLCCGCTTAQL 179 (337)
Q Consensus 113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~-~-~Lke--k---ls~~qw~~l~l~~~Gv~lv~~ 179 (337)
-|.+....|.+..-.++.+..+...++-++.-+.+.-... + ++++ . -....++|+++..+|..+...
T Consensus 61 gG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 61 GGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred hhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 5577899999999999999999999999987777765442 2 3332 2 234577888888888876543
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=66.99 E-value=17 Score=28.14 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=33.8
Q ss_pred HHhcCChhHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 127 IFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 127 al~~l~~~~~~ll~~-~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
|.+..+++.-.++.- .....-+.++.+++||++++.+..|-+....+|..+
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 444444444333332 233445678999999999999999988887776543
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=63.83 E-value=24 Score=32.42 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
+++...+.+..+..-...-...++|+.+++.-+++.+++..+|+|...|..|+...
T Consensus 101 slm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 101 SLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred HHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 33333444444444444444567899999999999999999999999999998654
No 112
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=60.84 E-value=2.8 Score=38.18 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHhhhHHHH-HHHHHHHHhcCCCc-HHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHH
Q 019654 125 YYIFAYVDAPGYQILKNLNIIS-TGVLYRIILKKKLS-EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL 202 (337)
Q Consensus 125 f~al~~l~~~~~~ll~~~~pl~-talla~~~Lkekls-~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~ 202 (337)
|+-++-.+-+...++++...+. +.++-.+++|||+= +.-.+++++.++-.++...-.-.. +..+.|+++.++++.
T Consensus 41 ~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtG---Q~LF~Gi~~l~l~~l 117 (381)
T PF05297_consen 41 FIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTG---QTLFVGIVILFLCCL 117 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHH
Confidence 3344445545555555554444 33444566676653 445666666655444433211111 245678887777666
Q ss_pred HHHHHHHHHHHHhhhCCCCchHH
Q 019654 203 LSGFAGVYTEAIMKKRPSRNINV 225 (337)
Q Consensus 203 ~~a~~~v~~e~~~k~~~~~~~~~ 225 (337)
+.=.-..|.+ +++++.. ++|.
T Consensus 118 LaL~vW~Ym~-lLr~~GA-s~Wt 138 (381)
T PF05297_consen 118 LALGVWFYMW-LLRELGA-SFWT 138 (381)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHH-HHHHhhh-HHHH
Confidence 5554566654 7777776 5543
No 113
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.20 E-value=20 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654 148 GVLYRIILKKKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 148 alla~~~Lkekls~~qw~~l~l~~~Gv~lv 177 (337)
..+|.+.+||.+++.++.|-.+...|+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 458999999999999999988888887655
No 114
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=58.25 E-value=28 Score=31.83 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-cccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhH
Q 019654 65 SVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLN 143 (337)
Q Consensus 65 ~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~ 143 (337)
+..+.+|.+..+++.+.+..+. ...+-.+.+. ...+++|..-...+-++...+.......=.+.-.+.++..+....
T Consensus 219 ss~EmvfySy~iG~vflf~~mv--lTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMV--LTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CcceEEEeeecccHHHHHHHHH--hcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 3577788888887776655442 2221111111 112445443222333333222222222223456777788888888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 144 IISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 144 pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
=..|.++|++++.++++-...-+..+.+.|+.+-..+.
T Consensus 297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 88999999999999999999999999999998876654
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=56.32 E-value=20 Score=27.77 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654 285 DNIVKVYSTSVA--MLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 332 (337)
Q Consensus 285 ~~~~~~~~~~~~--~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~ 332 (337)
++.-+.++.|-. ++.+.+.++.+-|++||..-++|+.+++.|+.+...
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 344455555544 356778889999999999999999999999865443
No 116
>PRK02237 hypothetical protein; Provisional
Probab=53.73 E-value=85 Score=24.44 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 287 IVKVYSTSVAM--LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 287 ~~~~~~~~~~~--~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
.-+.++.|-.. +.+.+.++.+-|++||..-++|+++++.|+.+..
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 34555555443 4566888999999999999999999999986543
No 117
>PRK15087 hemolysin; Provisional
Probab=49.87 E-value=1.8e+02 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhccCC
Q 019654 317 FLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 317 ~~G~~lV~~gv~ly~~~ 333 (337)
..|.++-..|..+|..+
T Consensus 172 ~~GG~~Y~~G~~fY~~~ 188 (219)
T PRK15087 172 AVGGVVYSLGVIFYVCK 188 (219)
T ss_pred HHHhHHHHhhHHHHccC
Confidence 47777777777777754
No 118
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=46.75 E-value=27 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654 291 YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330 (337)
Q Consensus 291 ~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly 330 (337)
+.+..+..++++.|..+-.|...-..++|..+++.|+++.
T Consensus 84 v~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 84 VTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred ecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4566778899999998877778888899999999998764
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=45.17 E-value=1.4e+02 Score=23.05 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 135 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 135 ~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
.+..--...++...+..++.=|.+..+.+|.|-.+..+|+.++...+
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 34444444555555556667788999999999999999999887654
No 120
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=44.00 E-value=2.9e+02 Score=26.23 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=71.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChh-HHHHHhhhHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHhhhhcc
Q 019654 106 EVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILK-------KKLSEIQWAAFILLCCGCTTA 177 (337)
Q Consensus 106 ~~~~~~i~all~~~~~~l~f~al~~l~~~-~~~ll~~~~pl~talla~~~Lk-------ekls~~qw~~l~l~~~Gv~lv 177 (337)
.+....+-|++.-+.+..+=.+++|+..+ .+++...+...+-+++--++.+ ++-...-.+|+++..+|+.++
T Consensus 72 ~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~ 151 (344)
T PF06379_consen 72 TLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAIC 151 (344)
T ss_pred HHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHH
Confidence 33344556666667777777888888777 4455556666666655444433 344567889999999999998
Q ss_pred cccCC-------CCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 019654 178 QLNSN-------SDRVLQTPLQGWIMAIVMALLSGFAGVYTE 212 (337)
Q Consensus 178 ~~~~~-------~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e 212 (337)
...+. .+.++.+.-.|++.++.+.+++|+-+.=.+
T Consensus 152 g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 152 GKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 65421 111122345799999999999998877655
No 121
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=43.95 E-value=66 Score=24.96 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=37.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 135 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 135 ~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
.+..--..-++...+-.+.+=|+|.++..|+|..+..+|+.++...|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 44444455566666777888899999999999999999999987654
No 122
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=43.35 E-value=3e+02 Score=26.18 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 273 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 273 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
.+-+....+.+.|+..-.......+..+++++.++++++++..||...++-..|+.+..
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33355556677888877788888899999999999999999999999999999998766
No 123
>PRK02237 hypothetical protein; Provisional
Probab=40.48 E-value=1.8e+02 Score=22.73 Aligned_cols=46 Identities=7% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654 136 YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 181 (337)
Q Consensus 136 ~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~ 181 (337)
+..--..-++...+..+..=|+|.+++.|+|..+..+|+.++...|
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3333444555555777888899999999999999999999887654
No 124
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=38.28 E-value=2.6e+02 Score=24.13 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCC
Q 019654 314 LAFFLGSIVVSVSVYLHSAGKLQR 337 (337)
Q Consensus 314 ~~~~~G~~lV~~gv~ly~~~~~~~ 337 (337)
.....|+++=..|..+|..+.|+|
T Consensus 155 ~~l~~gg~~Y~~G~~fY~~~~p~~ 178 (204)
T TIGR01065 155 SLLAAGGLLYTVGAIFYALKWPIP 178 (204)
T ss_pred HHHHHHhHHHHcchHheeecCCCC
Confidence 344566666677777777665655
No 125
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.31 E-value=23 Score=32.47 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=84.6
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHHHHHhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc--cc
Q 019654 28 PMNWPTGSAIVTLALTVLTSSQAILIVWSKR-AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST--TL 104 (337)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~~i~~k~~~~-~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~--~~ 104 (337)
...|... ++-+...+.-+.+++-.|..-. .++ .-....+..++.+++..+|.+. ...+- .+.....+ .+
T Consensus 181 ~ls~~Gv--ifGVlaSl~vAlnaiytkk~l~~v~~---~iw~lt~ynnv~a~lLflpll~--lnge~-~~v~~~~~l~a~ 252 (347)
T KOG1442|consen 181 TLSWIGV--IFGVLASLAVALNAIYTKKVLPPVGD---CIWRLTAYNNVNALLLFLPLLI--LNGEF-QAVVGFPHLPAI 252 (347)
T ss_pred ccchhhh--HHHHHHHHHHHHHHHhhheecccccC---eehhhHHHHHHHHHHHHHHHHH--HcchH-HHHcCcccchHH
Confidence 4566654 5556666667777777763221 111 1344556677778877778663 11111 01011111 22
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Q 019654 105 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCG 173 (337)
Q Consensus 105 ~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~G 173 (337)
+-+..+.+.|++.+.-|+...+=+|.++|-+..+-...+-..=++++..+++|..+...|-+-++...|
T Consensus 253 ~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvg 321 (347)
T KOG1442|consen 253 KFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVG 321 (347)
T ss_pred HHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEeh
Confidence 333345666666666666666667788888888888888888889999999999999988765444333
No 126
>PF03373 Octapeptide: Octapeptide repeat; InterPro: IPR005038 This octapeptide repeat is found in several bacterial proteins. The function of this repeat is unknown.; GO: 0019865 immunoglobulin binding
Probab=36.96 E-value=17 Score=14.62 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=4.2
Q ss_pred ccccCC
Q 019654 7 KDEDND 12 (337)
Q Consensus 7 ~~~~~~ 12 (337)
++|||.
T Consensus 2 gkeDnn 7 (8)
T PF03373_consen 2 GKEDNN 7 (8)
T ss_pred cccccc
Confidence 578875
No 127
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=31.96 E-value=5.1e+02 Score=25.51 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhhh--hcccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 019654 149 VLYRIILKKKLSEIQWAAFILLCCGC--TTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 219 (337)
Q Consensus 149 lla~~~Lkekls~~qw~~l~l~~~Gv--~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~ 219 (337)
.+.=.+-|.|+.+.|++=++++.+=- +++..++ +...+....+.++.|-++-+.|...++|..+
T Consensus 313 flfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSE-------hi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 313 FLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSE-------HIGFNLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33445567899999997655444332 2333322 2334666788888999999999999998765
No 128
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=30.51 E-value=1e+02 Score=26.98 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=39.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654 280 VMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331 (337)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~ 331 (337)
.+|..++...+-...+...+..++++.++||.+....++.+.+-+.|+.+..
T Consensus 73 AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 73 ALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred HHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 3444444444444456667888999999999999999999999999986554
No 129
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.83 E-value=93 Score=18.12 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=13.2
Q ss_pred cchHHHHHHHHHHHHHhhhccCC
Q 019654 311 HLSLAFFLGSIVVSVSVYLHSAG 333 (337)
Q Consensus 311 ~~t~~~~~G~~lV~~gv~ly~~~ 333 (337)
.-++..++|.+++..+.+++.+.
T Consensus 9 ~~~~~~~~G~~l~~~~~~~~~~r 31 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGGLLLRKR 31 (34)
T ss_pred ccHHHHHHHHHHHHHHHHHheec
Confidence 34556677776666655554443
No 130
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=2.8e+02 Score=21.51 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHH--HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 284 ADNIVKVYSTSVAM--LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 284 ~~~~~~~~~~~~~~--~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
..+.-+.++.+=.. +.+.+..+++=+..||.+-++|+.+.+.|+.+....|
T Consensus 54 ~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 54 AAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred chhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 33344555555443 4556667777899999999999999999976554443
No 131
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=26.47 E-value=2.1e+02 Score=19.26 Aligned_cols=45 Identities=9% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019654 163 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK 217 (337)
Q Consensus 163 qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~ 217 (337)
..+|..+..+|+++...|+ +|.+.++++-...|......+|.++.
T Consensus 5 ~v~G~~lv~~Gii~~~lPG----------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG----------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC----------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567788888888876653 25666677777777777777777654
No 132
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.58 E-value=4.6e+02 Score=22.62 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCCc
Q 019654 146 STGVLYRIILKKKLS 160 (337)
Q Consensus 146 ~talla~~~Lkekls 160 (337)
.+++...+++|+|++
T Consensus 188 ~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 188 VIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344445666776664
No 133
>PRK11715 inner membrane protein; Provisional
Probab=21.16 E-value=8e+02 Score=24.18 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=39.6
Q ss_pred HhcCCCcHHHHHHHHHHHhh--hhcccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 019654 154 ILKKKLSEIQWAAFILLCCG--CTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220 (337)
Q Consensus 154 ~Lkekls~~qw~~l~l~~~G--v~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~ 220 (337)
+-|.|+.+.|++=++++.+= .+++..++ +...+..+++.|+.|.++-+.|....+|....
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlSE-------HigF~~AYliAa~a~v~li~~Y~~~vl~~~k~ 385 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLSE-------HIGFTLAYLIAALACVLLIGFYLSAVLRSWKR 385 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34678888888655444432 23333322 23346677888889999999999999887653
No 134
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.79 E-value=94 Score=24.95 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHH
Q 019654 27 KPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAAL 85 (337)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~-~~~~vf~re~~~l~i~l~~~ 85 (337)
+|+.+.+++..+.....++.+...+..-...-. +.+.+ .....|....+.++.++...
T Consensus 57 rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~-~~~~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 57 RRARLIRRAITLATLSALLVCLVILLLFLSALL-SIDLSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555555555554444433322111 11222 44556666666666666555
Done!