Query 019654
Match_columns 337
No_of_seqs 218 out of 1423
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:04:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 1.8E-07 6.2E-12 72.7 9.6 69 112-180 35-104 (110)
2 2i68_A Protein EMRE; transmemb 98.4 2.3E-07 7.9E-12 74.8 6.1 67 114-180 37-104 (137)
3 3b5d_A Multidrug transporter E 98.2 1.3E-05 4.5E-10 62.0 9.8 67 269-335 39-106 (110)
4 2i68_A Protein EMRE; transmemb 98.1 2.3E-06 7.8E-11 68.9 5.5 68 267-334 37-105 (137)
5 2v50_A Multidrug resistance pr 5.9 1.7E+03 0.06 22.8 9.0 25 301-325 379-403 (1052)
6 2hac_A T-cell surface glycopro 5.1 4.1E+02 0.014 15.1 1.9 11 151-161 20-30 (33)
7 4dx5_A Acriflavine resistance 4.9 1.3E+03 0.043 23.9 7.1 27 299-325 910-936 (1057)
8 4dx5_A Acriflavine resistance 4.8 2.3E+03 0.078 21.9 9.1 26 300-325 378-403 (1057)
9 2kfd_A PRE-mRNA-processing pro 4.7 1.6E+02 0.0053 19.9 -0.1 10 2-11 48-57 (69)
10 2xpn_B SPT6, chromatin structu 4.6 1.8E+02 0.0062 15.3 0.2 11 2-12 14-24 (26)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.63 E-value=1.8e-07 Score=72.67 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 112 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 112 i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
...+++.++..+...+++++|.+.+..+ ..+.|+.+++++++++||++++.||+|+.+..+|+.++...
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345578888999999999999999888 89999999999999999999999999999999999988654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.45 E-value=2.3e-07 Score=74.77 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654 114 AVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 180 (337)
Q Consensus 114 all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~ 180 (337)
.+++.++..+...+++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35578889999999999999988887 89999999999999999999999999999999999988654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.16 E-value=1.3e-05 Score=62.00 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654 269 NHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335 (337)
Q Consensus 269 ~~a~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~ 335 (337)
..++...+..+.+|+.+....... ..+.+++++++|+++|||++|+.+++|.++|+.|+.+.+..++
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 334445566778888877776665 7899999999999999999999999999999999988776543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.15 E-value=2.3e-06 Score=68.92 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654 267 ILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334 (337)
Q Consensus 267 i~~~a~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~ 334 (337)
++..++...+..+.+|+.+....... +.+.|++++++|+++|||++|+.+++|+++|+.|+++.+..+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445555667778888887777666 899999999999999999999999999999999998876543
No 5
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=5.87 E-value=1.7e+03 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=17.2
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHH
Q 019654 301 AVVSVFLFGFHLSLAFFLGSIVVSV 325 (337)
Q Consensus 301 ~lls~~lfge~~t~~~~~G~~lV~~ 325 (337)
++....++|.+++....+|.++.++
T Consensus 379 ~~~~l~~~g~~ln~~s~~gl~~~iG 403 (1052)
T 2v50_A 379 TFGVLAAFGFSINTLTMFGMVLAIG 403 (1052)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3445567888999888877665543
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.12 E-value=4.1e+02 Score=15.11 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=5.7
Q ss_pred HHHHhcCCCcH
Q 019654 151 YRIILKKKLSE 161 (337)
Q Consensus 151 a~~~Lkekls~ 161 (337)
..++.+||+++
T Consensus 20 T~Ly~R~K~~~ 30 (33)
T 2hac_A 20 TALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHhhc
Confidence 34456666554
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.93 E-value=1.3e+03 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHH
Q 019654 299 LTAVVSVFLFGFHLSLAFFLGSIVVSV 325 (337)
Q Consensus 299 ~~~lls~~lfge~~t~~~~~G~~lV~~ 325 (337)
+..+.+..++|.+++...++|..++++
T Consensus 910 ~~~~~~l~~~g~~l~~~~~~g~i~l~G 936 (1057)
T 4dx5_A 910 IGALLAATFRGLTNDVYFQVGLLTTIG 936 (1057)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 344556678899999999998877654
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.84 E-value=2.3e+03 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHH
Q 019654 300 TAVVSVFLFGFHLSLAFFLGSIVVSV 325 (337)
Q Consensus 300 ~~lls~~lfge~~t~~~~~G~~lV~~ 325 (337)
.++....++|.+++...++|.++.++
T Consensus 378 ~~~~~l~~~g~~ln~~sl~gl~~~iG 403 (1057)
T 4dx5_A 378 GTFAVLAAFGFSINTLTMFGMVLAIG 403 (1057)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHee
Confidence 33445567889999888887765543
No 9
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=4.73 E-value=1.6e+02 Score=19.89 Aligned_cols=10 Identities=60% Similarity=1.072 Sum_probs=7.3
Q ss_pred cccccccccC
Q 019654 2 EYRKIKDEDN 11 (337)
Q Consensus 2 ~~~~~~~~~~ 11 (337)
||+.+-||||
T Consensus 48 Ey~~l~~E~~ 57 (69)
T 2kfd_A 48 EYKALGDEDN 57 (69)
T ss_dssp TSGGGTTSHH
T ss_pred HHHHhhccHH
Confidence 6778877765
No 10
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=4.63 E-value=1.8e+02 Score=15.32 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=8.4
Q ss_pred cccccccccCC
Q 019654 2 EYRKIKDEDND 12 (337)
Q Consensus 2 ~~~~~~~~~~~ 12 (337)
|||-+-+.||.
T Consensus 14 EYrYile~~~s 24 (26)
T 2xpn_B 14 EYRYVLESDPX 24 (26)
T ss_pred eEEEEeecCCC
Confidence 78888777774
Done!