Query 019654
Match_columns 337
No_of_seqs 218 out of 1423
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 05:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.2 2.6E+02 0.019 21.8 7.5 64 109-176 4-67 (248)
2 d1p4pa_ b.76.1.1 (A:) Outer su 4.7 63 0.0046 22.9 -0.4 11 2-12 13-23 (140)
3 d1v6ga1 g.39.1.3 (A:1-41) Acti 4.3 1.9E+02 0.014 16.0 1.5 15 14-28 3-17 (41)
4 d1u3em1 d.4.1.3 (M:1-105) Intr 3.2 1.4E+02 0.0098 20.0 0.2 25 1-25 1-25 (105)
5 d1i8ta2 d.16.1.7 (A:245-313) U 2.8 1.3E+02 0.0092 18.7 -0.2 6 2-7 1-6 (69)
6 d1zx3a1 a.43.1.6 (A:10-95) Hyp 2.8 2.7E+02 0.02 16.9 1.4 13 21-33 2-14 (86)
7 d1iwga8 f.35.1.1 (A:513-566,A: 2.7 9.6E+02 0.07 17.4 8.2 27 299-325 96-122 (222)
8 d1ub2a2 a.93.1.3 (A:427-720) C 2.3 2.8E+02 0.02 22.2 1.2 14 8-22 49-62 (294)
9 d2axpa1 c.37.1.1 (A:2-165) Hyp 1.7 2.3E+02 0.017 19.3 -0.3 7 5-11 50-56 (164)
10 d1v54k_ f.23.5.1 (K:) Mitochon 1.6 4.3E+02 0.031 14.9 0.9 16 314-329 10-25 (49)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.20 E-value=2.6e+02 Score=21.83 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654 109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 176 (337)
Q Consensus 109 ~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l 176 (337)
++.+.|++..+.-.+...++..=+...+ ....+.+++..+.++.+|.-+.||+-=.+.+..+.+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 4556666555544444444433333222 233456666778899999999999876666666544
No 2
>d1p4pa_ b.76.1.1 (A:) Outer surface protein B {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=4.71 E-value=63 Score=22.90 Aligned_cols=11 Identities=55% Similarity=0.900 Sum_probs=6.3
Q ss_pred cccccccccCC
Q 019654 2 EYRKIKDEDND 12 (337)
Q Consensus 2 ~~~~~~~~~~~ 12 (337)
||..|||.||.
T Consensus 13 EYtei~~~dgs 23 (140)
T d1p4pa_ 13 EYSQITDADNA 23 (140)
T ss_dssp EEEEESSSSCE
T ss_pred EEEEeecCCCC
Confidence 56666655554
No 3
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=1.9e+02 Score=15.99 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=10.5
Q ss_pred CCCCCCCcccccCCC
Q 019654 14 GGSSSGDLESLRGKP 28 (337)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (337)
.|||++|-.++++.+
T Consensus 3 ~~~~~~DYq~~fG~~ 17 (41)
T d1v6ga1 3 SGSSGLDYQRLYGTR 17 (41)
T ss_dssp CCCCCSCGGGSCCCB
T ss_pred CCcccccHHHHhCcc
Confidence 466888887777643
No 4
>d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=3.16 E-value=1.4e+02 Score=19.96 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=16.9
Q ss_pred CcccccccccCCCCCCCCCCccccc
Q 019654 1 MEYRKIKDEDNDGGGSSSGDLESLR 25 (337)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (337)
||++.|++-++.-.=|+-+++.+..
T Consensus 1 meWk~i~~~~~~Y~vS~~Grv~~~~ 25 (105)
T d1u3em1 1 MEWKDIKGYEGHYQVSNTGEVYSIK 25 (105)
T ss_dssp CCEEECTTSTTTEEEETTSCEEESS
T ss_pred CCCeECCCCCCeeEEcCCCCEEEcc
Confidence 8999998755433334777887654
No 5
>d1i8ta2 d.16.1.7 (A:245-313) UDP-galactopyranose mutase {Escherichia coli [TaxId: 562]}
Probab=2.85 E-value=1.3e+02 Score=18.74 Aligned_cols=6 Identities=67% Similarity=1.232 Sum_probs=3.1
Q ss_pred cccccc
Q 019654 2 EYRKIK 7 (337)
Q Consensus 2 ~~~~~~ 7 (337)
|||+|+
T Consensus 1 eYRSL~ 6 (69)
T d1i8ta2 1 EYRSLK 6 (69)
T ss_dssp CEEEEE
T ss_pred CccceE
Confidence 455554
No 6
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
Probab=2.77 E-value=2.7e+02 Score=16.85 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=8.6
Q ss_pred cccccCCCCCCch
Q 019654 21 LESLRGKPMNWPT 33 (337)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (337)
+.++-|++++|.-
T Consensus 2 vqqpdpmrknwim 14 (86)
T d1zx3a1 2 VQQPDPMRKNWIM 14 (86)
T ss_dssp CCCCCCSCCCCCC
T ss_pred CCCCChhHHhHHH
Confidence 4566677777763
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.66 E-value=9.6e+02 Score=17.35 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHH
Q 019654 299 LTAVVSVFLFGFHLSLAFFLGSIVVSV 325 (337)
Q Consensus 299 ~~~lls~~lfge~~t~~~~~G~~lV~~ 325 (337)
..++.+..+.+.+++....+|..+.++
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 455667778899999998888777554
No 8
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}
Probab=2.26 E-value=2.8e+02 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=9.4
Q ss_pred cccCCCCCCCCCCcc
Q 019654 8 DEDNDGGGSSSGDLE 22 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (337)
+.||+||+ .+++||
T Consensus 49 ~~d~~GG~-ngg~iR 62 (294)
T d1ub2a2 49 NSDKRGGA-NGARIR 62 (294)
T ss_dssp TTTTBCSS-TBTGGG
T ss_pred CcCCCCCc-chhhhc
Confidence 57888776 666643
No 9
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=1.68 E-value=2.3e+02 Score=19.27 Aligned_cols=7 Identities=71% Similarity=1.066 Sum_probs=3.0
Q ss_pred ccccccC
Q 019654 5 KIKDEDN 11 (337)
Q Consensus 5 ~~~~~~~ 11 (337)
|+.||||
T Consensus 50 kladedn 56 (164)
T d2axpa1 50 KLADEDN 56 (164)
T ss_dssp HHTTCCS
T ss_pred hhccccc
Confidence 3444444
No 10
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.63 E-value=4.3e+02 Score=14.88 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 019654 314 LAFFLGSIVVSVSVYL 329 (337)
Q Consensus 314 ~~~~~G~~lV~~gv~l 329 (337)
-..++|......+++-
T Consensus 10 n~vL~~Ga~fc~avW~ 25 (49)
T d1v54k_ 10 NAVLASGATFCVAVWV 25 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cEEEecccchhhhhhh
Confidence 3344444444444443
Done!