BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019656
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 44 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 100
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 101 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 160
Query: 205 RPKEL 209
+ + L
Sbjct: 161 KVESL 165
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 97
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 98 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 157
Query: 205 RPKEL 209
+ + L
Sbjct: 158 KVESL 162
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 95
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 96 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 155
Query: 205 RPKEL 209
+ + L
Sbjct: 156 KVESL 160
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 93
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 94 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 153
Query: 205 RPKEL 209
+ + L
Sbjct: 154 KVESL 158
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 40 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 96
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 97 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 156
Query: 205 RPKEL 209
+ + L
Sbjct: 157 KVESL 161
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 95
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 96 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 155
Query: 205 RPKEL 209
+ + L
Sbjct: 156 KVESL 160
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 93
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 94 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 153
Query: 205 RPKEL 209
+ + L
Sbjct: 154 KVESL 158
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 38 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 94
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 95 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 154
Query: 205 RPKEL 209
+ + L
Sbjct: 155 KVESL 159
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R ++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K
Sbjct: 35 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 91
Query: 147 EECQVPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGEC 204
EE P ++EF + D + K + RME LVL L + + + T FL YF+ + C
Sbjct: 92 EEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 151
Query: 205 RPKEL 209
+ + L
Sbjct: 152 KVESL 156
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 101
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ + C+ +
Sbjct: 102 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVES 161
Query: 209 L 209
L
Sbjct: 162 L 162
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 44 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 100
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ C+ +
Sbjct: 101 PPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVES 160
Query: 209 L 209
L
Sbjct: 161 L 161
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 97
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ C+ +
Sbjct: 98 PPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVES 157
Query: 209 L 209
L
Sbjct: 158 L 158
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ + Q T +L+V+++DRFLS S+ GKL +L+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 97
Query: 151 VPALSEF-QVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL-HYFMIKLCGECRPKE 208
P ++EF + D + K + RME LVL L + + + T FL YF+ C+ +
Sbjct: 98 PPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVES 157
Query: 209 L 209
L
Sbjct: 158 L 158
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
I+W+ + F T Y++V +DRF+ S+ L +L+ V + +A+K EE
Sbjct: 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKML---QLVGVTAMFIASKYEEMY 98
Query: 151 VPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL 193
P + +F V D + I++ME+ +L L++ +G P FL
Sbjct: 99 PPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFL 142
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQ 150
++W+ ++ T YL+ DF DR+++ + L ++L+ ++ L +AAK+EE
Sbjct: 54 LDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTL--LQLIGISSLFIAAKLEEIY 111
Query: 151 VPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFM 197
P L +F V D I MEL+++ L W++ +T ++L+ +M
Sbjct: 112 PPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYM 159
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146
R I+W+ + F T Y++V +DRF+ + L +L+ V + +A+K
Sbjct: 36 RAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKML---QLVGVTAMFIASKY 92
Query: 147 EECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFL 193
EE P + +F V D + I++ME+ +L L++ +G P FL
Sbjct: 93 EEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFL 140
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ--VDDFDFENK 167
L++++LDRFLS + +L +LL C+ +A+KM+E +P +E D +
Sbjct: 66 LAMNYLDRFLSLEPVKKSRL---QLLGATCMFVASKMKET-IPLTAEKLCIYTDNSIRPE 121
Query: 168 VIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTI 220
+ +MELL+++ L W + ++TP F+ +F+ K+ K+++ + + + +
Sbjct: 122 ELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVAL 174
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ--VDDFDFENK 167
L++++LDRFLS + +L +LL C+ +A+KM+E +P +E D +
Sbjct: 80 LAMNYLDRFLSLEPVKKSRL---QLLGATCMFVASKMKE-TIPLTAEKLCIYTDNSIRPE 135
Query: 168 VIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKV-INL 226
+ +MELL+++ L W + ++TP F+ +F+ K+ K+++ + + + + +
Sbjct: 136 ELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKF 195
Query: 227 MNHRPS 232
+++ PS
Sbjct: 196 ISNPPS 201
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQV-DDFDFENKV 168
L++++LDR+LS +L +LL C+ LA+K+ E + + + D +
Sbjct: 94 LAMNYLDRYLSCVPTRKAQL---QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQ 150
Query: 169 IQRMELLVLSTLDWKMGSITPFAFLHYFMIKL 200
++ E+LVL L W + ++ FL + + +L
Sbjct: 151 LRDWEVLVLGKLKWDLAAVIAHDFLAFILHRL 182
>pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 52 EFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTA 108
+F+EKL D +TD+GS G+ +D +T++WLK + +E +F F +RTA
Sbjct: 197 QFVEKLQDLDTDYGS---GYPND--PKTKAWLK----EHVEPVFGFPQFVRFSWRTA 244
>pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 52 EFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTA 108
+F+EKL D +TD+GS G+ +D +T++WLK + +E +F F +RTA
Sbjct: 194 QFVEKLQDLDTDYGS---GYPND--PKTKAWLK----EHVEPVFGFPQFVRFSWRTA 241
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFD-FENKV 168
LSV LDR+L K+ G ++ + AC+ + +K+ + +S+ D F N
Sbjct: 75 LSVSILDRYLCKKQ---GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131
Query: 169 IQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR-PKELVSRAVE 215
+ E +L L W ++ F+I LC + P++L + E
Sbjct: 132 LINQEKDILEALKWDTEAV----LATDFLIPLCNALKIPEDLWPQLYE 175
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 33 CDGSYYCDPCCFVLGNGD---EE--FIEKLVDKET 62
CDG+++ + FV+G GD EE F+ K DK T
Sbjct: 138 CDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVT 172
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFD-FENKV 168
LSV LDR+L K+ G ++ + AC+ + +K+ + +S+ D F N
Sbjct: 54 LSVSILDRYLCKK---QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 110
Query: 169 IQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR-PKELVSRAVE 215
+ E +L L W ++ FL I LC + P++L + E
Sbjct: 111 LINQEKDILEALKWDTEAVLATDFL----IPLCNALKIPEDLWPQLYE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,897,196
Number of Sequences: 62578
Number of extensions: 321372
Number of successful extensions: 617
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 33
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)