Query 019656
Match_columns 337
No_of_seqs 320 out of 1852
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 3.1E-48 1.1E-52 364.9 22.3 264 3-288 5-272 (306)
2 2f2c_A Cyclin homolog, V-cycli 100.0 3.8E-45 1.3E-49 335.7 20.9 226 51-284 21-249 (254)
3 2w96_A G1/S-specific cyclin-D1 100.0 1.3E-45 4.3E-50 341.9 17.6 235 50-291 24-265 (271)
4 1f5q_B Gamma herpesvirus cycli 100.0 6.1E-45 2.1E-49 333.3 18.9 221 50-284 21-243 (252)
5 1g3n_C V-cyclin; cyclin-depend 100.0 1.3E-44 4.3E-49 332.7 18.9 227 50-284 19-249 (257)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 8E-44 2.7E-48 327.9 17.9 224 48-285 5-230 (260)
7 1w98_B Cyclin E, G1/S-specific 100.0 7.2E-43 2.5E-47 325.2 23.0 225 38-283 8-242 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 7.8E-43 2.7E-47 322.8 16.6 221 48-284 5-226 (269)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.7E-34 5.8E-39 265.1 17.9 201 82-286 36-254 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 8E-34 2.7E-38 264.4 19.2 188 84-283 40-242 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 9.9E-34 3.4E-38 260.0 18.6 192 84-284 28-241 (257)
12 1zp2_A RNA polymerase II holoe 100.0 1.3E-33 4.4E-38 256.0 17.8 186 87-284 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 6.9E-33 2.3E-37 265.5 9.9 193 84-285 35-249 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 3.6E-31 1.2E-35 250.5 17.7 194 84-284 54-262 (323)
15 1c9b_A General transcription f 99.9 5E-26 1.7E-30 202.1 17.0 185 86-283 4-189 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 8.6E-22 2.9E-26 173.8 17.7 186 85-283 7-195 (200)
17 3k7a_M Transcription initiatio 99.7 1.9E-18 6.5E-23 164.7 5.0 183 87-282 126-321 (345)
18 4bbr_M Transcription initiatio 99.4 3.5E-13 1.2E-17 128.0 7.5 182 88-282 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.2 4E-06 1.4E-10 76.9 9.3 106 90-199 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.9 0.0025 8.4E-08 55.1 8.1 89 91-185 109-198 (200)
21 1c9b_A General transcription f 95.0 0.045 1.5E-06 47.3 6.7 85 91-181 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 89.9 2.1 7E-05 37.9 10.2 86 92-180 148-238 (257)
23 2i53_A Cyclin K; cell cycle, t 89.9 1.3 4.4E-05 39.2 8.9 87 92-181 153-250 (258)
24 3rgf_B Cyclin-C; protein kinas 86.4 1.5 5.1E-05 39.7 7.1 80 92-178 159-238 (285)
25 2pk2_A Cyclin-T1, protein TAT; 86.0 1.8 6.3E-05 40.5 7.7 85 93-180 156-245 (358)
26 1zp2_A RNA polymerase II holoe 85.5 1.4 4.9E-05 38.4 6.3 80 93-179 137-217 (235)
27 4bbr_M Transcription initiatio 85.1 1.7 5.9E-05 40.5 6.9 89 188-283 128-216 (345)
28 3k7a_M Transcription initiatio 83.5 0.76 2.6E-05 42.9 3.7 87 189-282 129-215 (345)
29 2f2c_A Cyclin homolog, V-cycli 76.3 6.4 0.00022 34.6 7.2 84 92-180 154-246 (254)
30 2cch_B Cyclin A2, cyclin-A; co 75.1 5.9 0.0002 35.0 6.7 84 91-180 140-226 (260)
31 3h4c_A Transcription factor TF 73.2 13 0.00044 31.9 7.8 108 89-202 14-129 (260)
32 1jkw_A Cyclin H; cell cycle, c 72.3 9.1 0.00031 35.1 7.4 88 192-280 63-153 (323)
33 2b9r_A Human cyclin B1; cell c 71.1 6.9 0.00024 34.8 6.1 55 92-149 140-194 (269)
34 1g3n_C V-cyclin; cyclin-depend 68.0 9.6 0.00033 33.5 6.4 83 92-179 153-245 (257)
35 3g33_B CCND3 protein; Ser/Thr 62.2 11 0.00037 34.3 5.6 84 93-181 174-266 (306)
36 2w96_A G1/S-specific cyclin-D1 61.6 27 0.00091 30.9 8.1 73 208-282 76-149 (271)
37 1w98_B Cyclin E, G1/S-specific 56.2 52 0.0018 29.2 9.1 72 207-282 68-143 (283)
38 3m03_A ORC6, origin recognitio 56.0 48 0.0017 24.7 7.2 77 94-177 6-88 (95)
39 1f5q_B Gamma herpesvirus cycli 36.9 79 0.0027 27.6 6.9 73 208-282 68-141 (252)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-48 Score=364.94 Aligned_cols=264 Identities=20% Similarity=0.293 Sum_probs=199.8
Q ss_pred CCCCCCCccC-ccccccCccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCCccccccc
Q 019656 3 DSDDGSFSVS-SLMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQS 81 (337)
Q Consensus 3 ~~~~~~~~~~-~L~c~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~ 81 (337)
|+||.+.+-. .|+|.|+.... .....||.++. ++|++++|+++|.++.|+++|+... +.+
T Consensus 5 ~~~~~~~~~~~~l~~~e~~~~~-----------~~a~~dp~l~~----~~~i~~~l~~~E~~~~p~~~y~~~~----q~~ 65 (306)
T 3g33_B 5 DDDDKSPGGSMELLCCEGTRHA-----------PRAGPDPRLLG----DQRVLQSLLRLEERYVPRASYFQCV----QRE 65 (306)
T ss_dssp -------------------------------------------C----HHHHHHHHHHHGGGGSCSSCCTTTS----TTT
T ss_pred cccccCCCCCcceeeecccccc-----------cccCCCCcccc----hHHHHHHHHHHHHHhCCCcHHHhhc----Ccc
Confidence 4445444433 79999941100 01123455444 7899999999999999998887531 234
Q ss_pred chHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec
Q 019656 82 WLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD 160 (337)
Q Consensus 82 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~ 160 (337)
++..||..+|+||++|+.+|+++++|+++||+|||||+++..+.+.++ ||+|+||||||+|+||..+|.+.+|+ ++
T Consensus 66 i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~l---qLv~~tcL~lAsK~eE~~p~~~~~l~~~~ 142 (306)
T 3g33_B 66 IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQL---QLLGAVCMLLASKLRETTPLTIEKLCIYT 142 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGH---HHHHHHHHHHHHHHHCSSCCCTTHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHHHHHhccCCCCCHHHHHHHh
Confidence 677999999999999999999999999999999999999999988876 99999999999999999999999999 89
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHH-HHHHHHHHHhhhhccCCcHHHHHHHHH
Q 019656 161 DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSR-AVELIMTITKVINLMNHRPSAIAAAAV 239 (337)
Q Consensus 161 ~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~l~~~PS~IAaAal 239 (337)
++.|++++|++||+.||++|+|+++.|||++||.+|++.++........+.. +..++..++.++.|+.|+||+||||||
T Consensus 143 ~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai 222 (306)
T 3g33_B 143 DHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSI 222 (306)
T ss_dssp TTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776554444443 445677789999999999999999999
Q ss_pred HHHHcCCCCchhh-hhhhcccccCCCCCHhHHHHHHHHHHHhHhccCCCC
Q 019656 240 LAASDGQLTRETI-ELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGKLNTP 288 (337)
Q Consensus 240 ~lA~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~~~~~ 288 (337)
++|+........| ..|...+..++|++.++|++|++.|.+++.+..+..
T Consensus 223 ~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~~ 272 (306)
T 3g33_B 223 GAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREA 272 (306)
T ss_dssp HHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998765544344 344556667789999999999999999998865544
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3.8e-45 Score=335.66 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhh
Q 019656 51 EEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLW 130 (337)
Q Consensus 51 ~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w 130 (337)
+|+++ |+++|.++.|+++|+... +.+++.++|..+|+||++|+.+|+++++|+++||+|+|||+++..+++.++
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~----q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~l- 94 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI----QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL- 94 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT----CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTH-
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc----CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHc-
Confidence 89999 999999999998887521 234677999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHH
Q 019656 131 AIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKEL 209 (337)
Q Consensus 131 ~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~ 209 (337)
||+|+||||||||+||..+|.+++|+ ++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++.+......
T Consensus 95 --qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~ 172 (254)
T 2f2c_A 95 --QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQ 172 (254)
T ss_dssp --HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHH
T ss_pred --cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHH
Confidence 99999999999999999999999999 899999999999999999999999999999999999999998775544333
Q ss_pred HHH-HHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCch-hhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 210 VSR-AVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRE-TIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 210 ~~~-~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
+.. +..++..++.++.|++|+||.|||||+++|+....... .|..+...+...+||+.++|++|++.|.+++.+.
T Consensus 173 ~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 173 LYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLY 249 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhC
Confidence 333 45566678899999999999999999999987631111 2433345566778999999999999999998653
No 3
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.3e-45 Score=341.87 Aligned_cols=235 Identities=19% Similarity=0.319 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchh
Q 019656 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (337)
Q Consensus 50 ~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~ 129 (337)
++|++++|+++|.++.|+++|+.. .+.+++..+|..+|+||++|+.+|+++++|+++||+|+|||+++..+++.++
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~----~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 99 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKC----VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 99 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHH----TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTH
T ss_pred HHHHHHHHHHHHHHhCCCchHHHh----cCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHH
Confidence 469999999999999998876531 1235678999999999999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHH
Q 019656 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE 208 (337)
Q Consensus 130 w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~ 208 (337)
|++|+||||||||+||..||.+++++ ++++.|++++|++||+.||++|+|++++|||++||.+|++.++.......
T Consensus 100 ---qlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~ 176 (271)
T 2w96_A 100 ---QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQ 176 (271)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999998866433223
Q ss_pred HHH-HHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCC----Cchhhh-hhhcccccCCCCCHhHHHHHHHHHHHhHh
Q 019656 209 LVS-RAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQL----TRETIE-LKMNVFPSCGSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 209 ~~~-~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~----~~~~~~-~~~~~l~~~~~~~~~~l~~C~~~i~~l~~ 282 (337)
.+. .+..++..++.++.|++|+||.||||||++|..... ....|. .+...+...+|++.++|++|++.|.+++.
T Consensus 177 ~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 177 IIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 333 345567777889999999999999999999975321 111222 23344556689999999999999999998
Q ss_pred ccCCCCCcc
Q 019656 283 GKLNTPNSV 291 (337)
Q Consensus 283 ~~~~~~~~~ 291 (337)
...+..++.
T Consensus 257 ~~~~~~~~~ 265 (271)
T 2w96_A 257 SSLRQAQQN 265 (271)
T ss_dssp TTTTSSSCC
T ss_pred HHHHHHhhc
Confidence 776554433
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.1e-45 Score=333.29 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchh
Q 019656 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (337)
Q Consensus 50 ~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~ 129 (337)
.|+++++|+++|.++.|. ..+.++++.||..+|+||++|+.+|+++++|+|+||+|+|||+++..+++.++
T Consensus 21 ~d~i~~~l~~~E~~~~p~---------~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVGV---------NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENY 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSSS---------SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred HHHHHHHHHHHHHHhCcC---------ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 459999999999998771 12345667899999999999999999999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHH
Q 019656 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE 208 (337)
Q Consensus 130 w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~ 208 (337)
||+|+|||+||+|+||..||.+.+++ ++++.|++++|++||+.||++|+|+++.|||++||++|++.++.......
T Consensus 92 ---qLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~ 168 (252)
T 1f5q_B 92 ---QSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYL 168 (252)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999998865432222
Q ss_pred HH-HHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 209 LV-SRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 209 ~~-~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
.+ ..+..++..++.++.|+.|+||+|||||+.+++.... ..+..+...+...+|+++++|.+|++.|.+++...
T Consensus 169 ~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~--~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 169 NIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKY--DYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCC--CchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 22 3344456677999999999999999999888764221 11222234455678999999999999999987553
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-44 Score=332.72 Aligned_cols=227 Identities=16% Similarity=0.187 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchh
Q 019656 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (337)
Q Consensus 50 ~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~ 129 (337)
++|++ +|+++|.++.|+++|+.. .+.+++.++|..+|+||++|+.+|+++++|+++||+|+|||+++..+++.++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~----~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGT----FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHH----HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHh----cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHH
Confidence 48999 999999999998776531 2235678999999999999999999999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHH
Q 019656 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE 208 (337)
Q Consensus 130 w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~ 208 (337)
||+|+||||||||+||..+|.+.+|+ ++++.|++++|++||+.||++|+|+++.|||++||.+|++.++.+.....
T Consensus 94 ---qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~ 170 (257)
T 1g3n_C 94 ---QKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLD 170 (257)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHH
T ss_pred ---HHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999987655433
Q ss_pred HHHH-HHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCch--hhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 209 LVSR-AVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRE--TIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 209 ~~~~-~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
.+.. +..++..++.++.|++|+||.|||||+++|........ ..+.|...+...+|++.++|.+|++.|.+++.+.
T Consensus 171 ~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~ 249 (257)
T 1g3n_C 171 FWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDF 249 (257)
T ss_dssp HHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHC
Confidence 3333 45567778899999999999999999999975432110 1123445555667999999999999999998764
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=8e-44 Score=327.90 Aligned_cols=224 Identities=24% Similarity=0.267 Sum_probs=195.1
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccc
Q 019656 48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDG 127 (337)
Q Consensus 48 ~~~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~ 127 (337)
+..+|++++|++.|.++.|+++|+..+ .+++..+|..+|+||++|+.+|+++++|+++||+|+|||+++..+++.
T Consensus 5 eY~~di~~~l~~~E~~~~p~~~y~~~q-----~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 79 (260)
T 2cch_B 5 DYHEDIHTYLREMEVKCKPKVGYMKKQ-----PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 79 (260)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTTGGGGC-----SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred hHHHHHHHHHHHHHhhcCCCchhhhcC-----CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence 578999999999999999998887654 346779999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCCh
Q 019656 128 KLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP 206 (337)
Q Consensus 128 ~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~ 206 (337)
++ |++|+|||+||||+||..+|.+.+|+ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.
T Consensus 80 ~l---qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~-- 154 (260)
T 2cch_B 80 KL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN-- 154 (260)
T ss_dssp HH---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC--
T ss_pred HH---hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh--
Confidence 87 99999999999999999999999999 9999999999999999999999999999999999999999887543
Q ss_pred HHHHHHHHHHHHHHHhhhh-ccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhccC
Q 019656 207 KELVSRAVELIMTITKVIN-LMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGKL 285 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~-~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~~ 285 (337)
..+...+..++..++.+.. |++|+||.|||||+++|...... .. |...+..++|++.++|++|++.|.+++....
T Consensus 155 ~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~---w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~ 230 (260)
T 2cch_B 155 CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QS---WPESLIRKTGYTLESLKPCLMDLHQTYLKAP 230 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CC---SCHHHHHHHCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-Cc---chHHHHHHhCcCHHHHHHHHHHHHHHHHhcC
Confidence 2344444556666688888 99999999999999999753221 22 3344556679999999999999999987653
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.2e-43 Score=325.22 Aligned_cols=225 Identities=21% Similarity=0.326 Sum_probs=193.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHh
Q 019656 38 YCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDR 117 (337)
Q Consensus 38 ~~~~~~~~~~~~~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DR 117 (337)
..+|.+++ ++++|++++|+++|.++.|+++|+..+ .+++.++|..+|+||++|+.+|+++++|+++||+||||
T Consensus 8 ~~~p~l~~--~y~~~i~~~l~~~E~~~~~~~~y~~~q-----~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDR 80 (283)
T 1w98_B 8 SPLPVLSW--ANREEVWKIMLNKEKTYLRDQHFLEQH-----PLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDR 80 (283)
T ss_dssp CCSCCCSS--SCHHHHHHHHHHHTTTSCCCTTGGGGC-----TTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHH
T ss_pred CCCcchhh--cCHHHHHHHHHHHHHHhCCCchhhccC-----CCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566666 678999999999999999988887643 34677999999999999999999999999999999999
Q ss_pred hhcc-cccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHH
Q 019656 118 FLSK-RSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHY 195 (337)
Q Consensus 118 fls~-~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~ 195 (337)
|++. ..+++.++ ||+|+|||+||||+||..+|.+++|+ ++++.|++++|.+||+.||++|+|++++|||++||.+
T Consensus 81 fls~~~~v~~~~l---qlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 81 YMATQENVVKTLL---QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp HHHHCCCCCGGGH---HHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHhCCCCCHHHH---HHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 9998 57877766 99999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHhhCCCC--------hHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCH
Q 019656 196 FMIKLCGECR--------PKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEI 267 (337)
Q Consensus 196 f~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (337)
|++.++.... .......+.+++..++.++.|++|+||.||||||++|.. . ..+...+|+++
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~---~~l~~~tg~~~ 226 (283)
T 1w98_B 158 YMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS--------S---ELMQKVSGYQW 226 (283)
T ss_dssp HHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------H---HHHHHHSCCCH
T ss_pred HHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------h---HHHHHHhCCCH
Confidence 9998865432 122333455677778889999999999999999999841 1 22335679999
Q ss_pred hHHHHHHHHHHHhHhc
Q 019656 268 EHIYSCYSLMQGIEMG 283 (337)
Q Consensus 268 ~~l~~C~~~i~~l~~~ 283 (337)
++|++|++.|..++..
T Consensus 227 ~~i~~c~~~l~~~~~~ 242 (283)
T 1w98_B 227 CDIENCVKWMVPFAMV 242 (283)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988753
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=7.8e-43 Score=322.81 Aligned_cols=221 Identities=20% Similarity=0.223 Sum_probs=193.3
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccc
Q 019656 48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDG 127 (337)
Q Consensus 48 ~~~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~ 127 (337)
+..+|++++|+++|.++.|+++|+..+ +++.++|..+++||.+|+.+|+++++|+++||+|+|||++...+++.
T Consensus 5 eY~~di~~~l~~~E~~~~~~~~y~~~q------~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~ 78 (269)
T 2b9r_A 5 EYVKDIYAYLRQLEAAQAVRPKYLLGR------EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK 78 (269)
T ss_dssp --CCTTTTTHHHHHHTTCCCTTTTSSS------SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred HHHHHHHHHHHHHHHhhCCCcccccCC------CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH
Confidence 456789999999999999998887643 56779999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCCh
Q 019656 128 KLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP 206 (337)
Q Consensus 128 ~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~ 206 (337)
++ |++|+||||||||+||..+|.+++|+ ++++.|++++|.+||+.||++|+|+++.|||++||.+|.+..+.+
T Consensus 79 ~l---qlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~--- 152 (269)
T 2b9r_A 79 ML---QLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD--- 152 (269)
T ss_dssp GH---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC---
T ss_pred Hh---hHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC---
Confidence 87 99999999999999999999999999 999999999999999999999999999999999999998876532
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 207 KELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
......+..++..++.+..|++|+||.||||||++|....... .| ...+..++|+++++|++|++.|.+++...
T Consensus 153 ~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w---~~~l~~~tg~~~~~l~~~~~~l~~~~~~~ 226 (269)
T 2b9r_A 153 VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EW---TPTLQHYLSYTEESLLPVMQHLAKNVVMV 226 (269)
T ss_dssp HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CS---CTTHHHHSCCCSSTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CC---CHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3444556667777889999999999999999999997543222 23 34555678999999999999999987654
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.7e-34 Score=265.11 Aligned_cols=201 Identities=17% Similarity=0.195 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec
Q 019656 82 WLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD 160 (337)
Q Consensus 82 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~ 160 (337)
....+|..+++||.+++.+|+++++|+++|++|||||++++.+.+.++ |++|+||||||||+||. ++.+++++ ++
T Consensus 36 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~---qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 36 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPR---YVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCH---HHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 445899999999999999999999999999999999999999999887 99999999999999996 78899987 43
Q ss_pred -----cCCC------CHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHhhhhccC
Q 019656 161 -----DFDF------ENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP-KELVSRAVELIMTITKVINLMN 228 (337)
Q Consensus 161 -----~~~~------~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~l~ 228 (337)
++.| ++++|++||+.||++|+|+++++||++||.+|++.++.+... ..+...+..++..++.+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 2233 488999999999999999999999999999999987654211 2466677778888899999999
Q ss_pred CcHHHHHHHHHHHHHcCCC-CchhhhhhhcccccC----CCCCHhHHHHHHHHHHHhHhccCC
Q 019656 229 HRPSAIAAAAVLAASDGQL-TRETIELKMNVFPSC----GSPEIEHIYSCYSLMQGIEMGKLN 286 (337)
Q Consensus 229 ~~PS~IAaAal~lA~~~~~-~~~~~~~~~~~l~~~----~~~~~~~l~~C~~~i~~l~~~~~~ 286 (337)
|+||.||+|||++|..... ....|......-.|| ++++.++|.+|++.|.++|....+
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~~ 254 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ 254 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSCC
T ss_pred cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999975322 122232111111222 489999999999999999876543
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=264.43 Aligned_cols=188 Identities=16% Similarity=0.141 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec--
Q 019656 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD-- 160 (337)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~-- 160 (337)
.++|..+++||.+++.+|+|+++|+++|++|||||++++.+.+.++ |++|+||||||||+||+.+|.+.+++ ++
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~---~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP---VLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCH---HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCH---HHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999887 99999999999999999877788876 43
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccC
Q 019656 161 ------------DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMN 228 (337)
Q Consensus 161 ------------~~~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~ 228 (337)
++.+++++|++||+.||++|+|+++++||++||.+|++.++. ...+...++.++..++.+..++.
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~---~~~~~~~A~~~l~~sl~t~~~l~ 193 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ---EDMLLPLAWRIVNDTYRTDLCLL 193 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHccChhhc
Confidence 245899999999999999999999999999999999999875 35667778888989999999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhc
Q 019656 229 HRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMG 283 (337)
Q Consensus 229 ~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~ 283 (337)
|+||.||+|||++|....... ...|... .+++.++|.+|++.|.++|..
T Consensus 194 ~~Ps~IAaAaiylA~~~~~~~--~~~W~~~----~~~~~~~l~~~~~~il~ly~~ 242 (285)
T 3rgf_B 194 YPPFMIALACLHVACVVQQKD--ARQWFAE----LSVDMEKILEIIRVILKLYEQ 242 (285)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC--CHHHHHT----SCSCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcCCC--hhhHHHH----HCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999997533221 1233332 379999999999999999864
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=9.9e-34 Score=260.00 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec--
Q 019656 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD-- 160 (337)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~-- 160 (337)
..+|..+++||.+++.+|+++++|+++|++|||||++++.+.+.++ |++|+||||||||+||. +|.+.+++ ++
T Consensus 28 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~---qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNK---NIISSTALFLAAKVEEQ-ARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCH---HHHHHHHHHHHhccccC-CcCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999887 99999999999999999 88899986 43
Q ss_pred ------------cCCCC--HHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh-hhh
Q 019656 161 ------------DFDFE--NKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITK-VIN 225 (337)
Q Consensus 161 ------------~~~~~--~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 225 (337)
+..|+ +++|++||+.||++|+|+++++||+.||.+|++.++.. .++...++.++..++. +..
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~---~~~~~~A~~~~~~sl~~~~~ 180 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS---KDLAQTSYFMATNSLHLTTF 180 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHCCG
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC---cHHHHHHHHHHHhhhhcccH
Confidence 33444 89999999999999999999999999999999988653 4566666777767664 455
Q ss_pred ccCCcHHHHHHHHHHHHHcCCC---Cch-hhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 226 LMNHRPSAIAAAAVLAASDGQL---TRE-TIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 226 ~l~~~PS~IAaAal~lA~~~~~---~~~-~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
++.|+||.||+|||++|..... +.. .-..|...+ ..+++.++|.+|++.|.+++...
T Consensus 181 ~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 181 CLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp GGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999975321 110 001122221 24799999999999999998654
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=256.01 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhccccccc-chhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccC--
Q 019656 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDD-GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDF-- 162 (337)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~-~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~-- 162 (337)
|..+++||.+++..|+++++|+++|++|||||+++..+.+ .++ |++|+||||||||+||. ++.+++++ ++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~---~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSL---EALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCH---HHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998 777 99999999999999996 77899998 6643
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHH
Q 019656 163 ----DFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAA 238 (337)
Q Consensus 163 ----~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAa 238 (337)
.+++++|++||+.||++|+|++.++||+.||.+|++.++. ..++...+..++..++.+..++.|+||.||+||
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~---~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAa 180 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII---NQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCchhccCHHHHHHHH
Confidence 6899999999999999999999999999999999987643 356777788899899999999999999999999
Q ss_pred HHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 239 VLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 239 l~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
|++|...... ..+.+.. ++.+++.++|.+|++.|.++|...
T Consensus 181 i~lA~~~~~~--~~~~~~~---~~~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 181 LLISCCNDEN--TIPKLLD---LIKSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHTSCTT--HHHHHHH---HCCHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhcCC--CCCCCcc---hhhcCCHHHHHHHHHHHHHHHhhC
Confidence 9999754322 1111111 233899999999999999998764
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.98 E-value=6.9e-33 Score=265.49 Aligned_cols=193 Identities=15% Similarity=0.069 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec--
Q 019656 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD-- 160 (337)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~-- 160 (337)
..+|..+++||.+|+.+|+|+++|+++|++|||||++++.+.+.++ |++|+||||||||+||. ++.+.+|+ ++
T Consensus 35 ~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~---qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPG---NSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccH---HHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999887 99999999999999999 78899987 43
Q ss_pred ------------cCCCC--HHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh-hhh
Q 019656 161 ------------DFDFE--NKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITK-VIN 225 (337)
Q Consensus 161 ------------~~~~~--~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 225 (337)
+..|+ +++|++||+.||++|+|+|+++||+.||..|++.++. ..++...++.++...+. ...
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~---~~~l~~~A~~ll~~sl~~t~l 187 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA---SKDLAQTSYFMATNSLHLTTF 187 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTTSCG
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHhcCcc
Confidence 22343 8899999999999999999999999999999998865 25566667777777764 445
Q ss_pred ccCCcHHHHHHHHHHHHHcCCCCc---h-hhhhhhcccccCCCCCHhHHHHHHHHHHHhHhccC
Q 019656 226 LMNHRPSAIAAAAVLAASDGQLTR---E-TIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMGKL 285 (337)
Q Consensus 226 ~l~~~PS~IAaAal~lA~~~~~~~---~-~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~~~ 285 (337)
++.|+||.||+|||++|....... . .-..|+..+ ..+++.++|.+|++.|.+++....
T Consensus 188 ~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~ 249 (358)
T 2pk2_A 188 SLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTP 249 (358)
T ss_dssp GGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCT
T ss_pred hhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCc
Confidence 899999999999999997533211 0 001122221 136899999999999999986543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=3.6e-31 Score=250.54 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHhHHHhC--CChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec
Q 019656 84 KCARLDAIEWIFNKRAMFG--FQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD 160 (337)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~ 160 (337)
..+|...++||.+++..|+ ++++|+++|++|||||++.+.+.+.++ |++|+||||||||+||. ++.+.+|+ +.
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~---~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHP---RIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCH---HHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4789999999999999999 999999999999999999999999887 99999999999999999 67789987 44
Q ss_pred cC-----CCCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhC----CCChHHHHHHHHHHHHHHHhhhhccCCcH
Q 019656 161 DF-----DFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG----ECRPKELVSRAVELIMTITKVINLMNHRP 231 (337)
Q Consensus 161 ~~-----~~~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~l~~~P 231 (337)
.. .+++++|++||+.||++|+|++.++||+.||..|+..+.. ......+...++.++..++.+..++.|+|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~P 209 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTP 209 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCH
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCH
Confidence 32 3678999999999999999999999999999999987631 22234566777888888888899999999
Q ss_pred HHHHHHHHHHHHcCCCC-chhhhhhhcccccC--CCCCHhHHHHHHHHHHHhHhcc
Q 019656 232 SAIAAAAVLAASDGQLT-RETIELKMNVFPSC--GSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 232 S~IAaAal~lA~~~~~~-~~~~~~~~~~l~~~--~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
|+||+|||++|...... ...|. ..+... .+++.++|.+|++.|..++...
T Consensus 210 s~IAaAai~lA~~~~~~~~~~w~---~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 210 SQIALTAILSSASRAGITMESYL---SESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHH---HHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCChHHHH---HHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 99999999999743221 12333 322222 5688999999999999998764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=5e-26 Score=202.10 Aligned_cols=185 Identities=19% Similarity=0.217 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCC
Q 019656 86 ARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDF 164 (337)
Q Consensus 86 ~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~ 164 (337)
......+||.+++..+++++.|+.+|+.||+||+....+...+. +++++||||||||+||. +++++++. +.+ +
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~---~~v~aaclylAcK~ee~-p~~l~di~~~~~--~ 77 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRAN---DAIASACLYIACRQEGV-PRTFKEICAVSR--I 77 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--S
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCH---HHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--C
Confidence 46678999999999999999999999999999999999988887 99999999999999998 78899998 665 8
Q ss_pred CHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHc
Q 019656 165 ENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASD 244 (337)
Q Consensus 165 ~~~~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~ 244 (337)
+.++|.++|+.||++|+|++..++|+.|+.+|.+.++.+ .++...+..++..+..+..+++|+|+.||+||||+|..
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~---~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~ 154 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 154 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998763 44556667777777777788899999999999999975
Q ss_pred CCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhc
Q 019656 245 GQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMG 283 (337)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~ 283 (337)
...... +...+....+++..+|++|++.|.+....
T Consensus 155 ~~~~~~----~~~~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 155 ASAEKR----TQKEIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp TSSSCC----CHHHHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred HHCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 432221 12234455689999999999999886554
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=8.6e-22 Score=173.78 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCC
Q 019656 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFD 163 (337)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~ 163 (337)
+....+.++|.+++..+++++.+..+|..|++||+....+..... +.++++|||+|||.||. |.++.|+. +.+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~---~~vaaAclylAcr~~~~-p~~l~di~~~~~-- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSI---ESVMAACVYAACRLLKV-PRTLDEIADIAR-- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCH---HHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCH---HHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--
Confidence 345689999999999999999999999999999999988876666 99999999999999996 78899988 664
Q ss_pred CCHHHHHHHHHHHHHHcCCcccc--CChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH
Q 019656 164 FENKVIQRMELLVLSTLDWKMGS--ITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLA 241 (337)
Q Consensus 164 ~~~~~I~~mE~~IL~~L~~~l~~--~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~l 241 (337)
++.++|.++++.|++.|+|++.. ++|+.|+.+|...++.. .++...++.++.....+..+.+++|+.|||||||+
T Consensus 81 v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~---~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~ 157 (200)
T 1ais_B 81 VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS---EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYI 157 (200)
T ss_dssp SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC---HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHH
Confidence 78999999999999999999999 99999999999999764 45667778888888888888999999999999999
Q ss_pred HHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHhc
Q 019656 242 ASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEMG 283 (337)
Q Consensus 242 A~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~~ 283 (337)
|....... .+...+....++++.+|+.|++.|.+.+..
T Consensus 158 A~~~~~~~----~t~~ei~~~~~vs~~ti~~~~~~l~~~l~~ 195 (200)
T 1ais_B 158 ASLLEGEK----RTQREVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHHHTTCC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 97433221 122344556789999999999999987653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.9e-18 Score=164.67 Aligned_cols=183 Identities=10% Similarity=0.044 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCC
Q 019656 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFE 165 (337)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~ 165 (337)
...+...|..++..++++..+.-.|..||.|++....+..... +.+++||||||||.|+. |.++.++. +.+ ++
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~---~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~ 199 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSM---ESIMAASILIGCRRAEV-ARTFKEIQSLIH--VK 199 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCS---HHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcH---HHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CC
Confidence 3467899999999999999999999999999999988877776 99999999999999998 78899988 664 78
Q ss_pred HHHHHHHHHHHHHHcC------------CccccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHH
Q 019656 166 NKVIQRMELLVLSTLD------------WKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSA 233 (337)
Q Consensus 166 ~~~I~~mE~~IL~~L~------------~~l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~ 233 (337)
.++|.++++.|++.|+ +.+.+++|..|+.+|...++.. ..+...++.++..+..+..+.+++|+.
T Consensus 200 ~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~---~~v~~~A~~i~~~~~~~~l~~Gr~P~~ 276 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP---MQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp SHHHHHHHHHHHHHHTCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHhchhcCCCHHH
Confidence 8999999999999999 9999999999999999998774 345666777777777777788999999
Q ss_pred HHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHh
Q 019656 234 IAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 234 IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~ 282 (337)
|||||||+|..... ...+...+....+++...|+.+++.|.+...
T Consensus 277 IAaAaIylAa~~~~----~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 277 IAVVSIYLNILLFQ----IPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHC----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999964321 1222345666789999999999999987653
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.39 E-value=3.5e-13 Score=128.05 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCH
Q 019656 88 LDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFEN 166 (337)
Q Consensus 88 ~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~ 166 (337)
..+...|.+++..++++..+.-.|..++.+++....+..... ..++++|||+|||.++. |.++.++. +.+ .++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~---e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~ 200 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSM---ESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKT 200 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCH---HHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCH---HHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCH
Confidence 446778899999999999999999999999999877766555 89999999999999987 67788887 654 678
Q ss_pred HHHHHHHHHHHHHcCCc------------cccCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHH
Q 019656 167 KVIQRMELLVLSTLDWK------------MGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAI 234 (337)
Q Consensus 167 ~~I~~mE~~IL~~L~~~------------l~~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~I 234 (337)
++|.+..+.|.+.|+.. +...+|..|+.+|...++... ++...+.+++..+.......+.+|+.|
T Consensus 201 keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~---~v~~~A~~i~~~~~~~~i~~GR~P~~I 277 (345)
T 4bbr_M 201 KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM---QVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp THHHHHHHHHHHCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHhcccccCCChHHH
Confidence 99999999999999974 778899999999999987743 344555556555555555678999999
Q ss_pred HHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHHhHh
Q 019656 235 AAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 235 AaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~ 282 (337)
||||||+|..... . ......+....+++...|+..++.|.+...
T Consensus 278 AAAaIylAa~l~g--~--~~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 278 AVVSIYLNILLFQ--I--PITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHhC--C--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999964221 1 222345666778999999999988876543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.22 E-value=4e-06 Score=76.85 Aligned_cols=106 Identities=7% Similarity=0.053 Sum_probs=81.9
Q ss_pred HHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccc-cccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHH
Q 019656 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRS-IDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENK 167 (337)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~-v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~ 167 (337)
+-+|+.++..+-++++.++..|+.|+||+..... +... .+..+-+-++||.+|+|+-+-....-+.+. ++ .++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~-~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLN-SLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCS-TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccC-CchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 5578899999999999999999999999987532 2211 223488889999999999555455556665 54 47999
Q ss_pred HHHHHHHHHHHHcCCccccCChHHHHHHHHHH
Q 019656 168 VIQRMELLVLSTLDWKMGSITPFAFLHYFMIK 199 (337)
Q Consensus 168 ~I~~mE~~IL~~L~~~l~~~Tp~~fl~~f~~~ 199 (337)
++-+||+..|..|+|++.+. +..|..+++..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 99999999999999999755 55666655544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.93 E-value=0.0025 Score=55.11 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=73.3
Q ss_pred HHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHH
Q 019656 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (337)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I 169 (337)
-++|.+.+..++++.++.-.|..++.+.....-+....+ ..+|+||+++|+++... +.+.+++. +++ .+..+|
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P---~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti 182 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP---AGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTV 182 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCH---HHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHH
Confidence 357778888999999999999999999997766666667 99999999999999775 34567766 554 688999
Q ss_pred HHHHHHHHHHcCCccc
Q 019656 170 QRMELLVLSTLDWKMG 185 (337)
Q Consensus 170 ~~mE~~IL~~L~~~l~ 185 (337)
.+.-..+.+.|+..+.
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 183 RNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.01 E-value=0.045 Score=47.31 Aligned_cols=85 Identities=6% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHH
Q 019656 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (337)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I 169 (337)
.++|.+.+..++++.++.-+|..++..-+...-.....+ ..+|+||+++|+++.+.. ....++. +. .++..+|
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P---~~IAaAaiylA~~~~~~~-~~~~~i~~~~--~v~~~tI 176 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSP---ISVAAAAIYMASQASAEK-RTQKEIGDIA--GVADVTI 176 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCH---HHHHHHHHHHHHHTSSSC-CCHHHHHHHH--TCCHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCCh---HHHHHHHHHHHHHHHCCC-CCHHHHHHHh--CCCHHHH
Confidence 356667888999999999999999998887555555666 999999999999997653 3455554 33 4578888
Q ss_pred HHHHHHHHHHcC
Q 019656 170 QRMELLVLSTLD 181 (337)
Q Consensus 170 ~~mE~~IL~~L~ 181 (337)
.+.-+.++..++
T Consensus 177 ~~~~~~l~~~l~ 188 (207)
T 1c9b_A 177 RQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHGGGHH
T ss_pred HHHHHHHHHHHH
Confidence 888777777654
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.86 E-value=2.1 Score=37.92 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHhHHHhCCChHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHhhhhccCCCCccc---ee-eccCCCCH
Q 019656 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLS-KRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSE---FQ-VDDFDFEN 166 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~~DRfls-~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~d---l~-i~~~~~~~ 166 (337)
+++......++.+.++..+|..++..-+. ....-...+ ..+|+||+++|+++-+...|.-.+ .- .-+..++.
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKP---TVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCH---HHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCH---HHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 35556666778888888888888755442 222344556 899999999999996655443221 11 11234789
Q ss_pred HHHHHHHHHHHHHc
Q 019656 167 KVIQRMELLVLSTL 180 (337)
Q Consensus 167 ~~I~~mE~~IL~~L 180 (337)
++|..+-..|+..+
T Consensus 225 ~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 225 ELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888888754
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.86 E-value=1.3 Score=39.20 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHhHHHhCCCh----HHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCccc----ee-ecc-
Q 019656 92 EWIFNKRAMFGFQF----RTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSE----FQ-VDD- 161 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~----~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~d----l~-i~~- 161 (337)
+|+......++.+. ++..+|..+++.-+.....-...+ ..+|+||+++|+++-+..+|.... -. ...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEP---EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCH---HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccCh---HHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46667777777776 577788888888776655556667 899999999999986653332111 01 111
Q ss_pred -CCCCHHHHHHHHHHHHHHcC
Q 019656 162 -FDFENKVIQRMELLVLSTLD 181 (337)
Q Consensus 162 -~~~~~~~I~~mE~~IL~~L~ 181 (337)
..++.++|..+-..|++...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 25789999999888887654
No 24
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=86.42 E-value=1.5 Score=39.69 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCccceeeccCCCCHHHHHH
Q 019656 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQR 171 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~i~~~~~~~~~I~~ 171 (337)
++|......++.+..+..+|..++..-+.....-...+ ..||++|+++|+++..... ... .....++.++|..
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~P---s~IAaAaiylA~~~~~~~~---~~W-~~~~~~~~~~l~~ 231 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPP---FMIALACLHVACVVQQKDA---RQW-FAELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCH---HHHHHHHHHHHHHHTTCCC---HHH-HHTSCSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCH---HHHHHHHHHHHHHHcCCCh---hhH-HHHHCCCHHHHHH
Confidence 45666667778888889999999888775554555566 8999999999999855321 111 1112355555555
Q ss_pred HHHHHHH
Q 019656 172 MELLVLS 178 (337)
Q Consensus 172 mE~~IL~ 178 (337)
+-..|++
T Consensus 232 ~~~~il~ 238 (285)
T 3rgf_B 232 IIRVILK 238 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 25
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=86.03 E-value=1.8 Score=40.53 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=58.0
Q ss_pred HHHHhHHHhCCChHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHhhhhccCCCCcc---cee-eccCCCCHH
Q 019656 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLS-KRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALS---EFQ-VDDFDFENK 167 (337)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~~DRfls-~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~---dl~-i~~~~~~~~ 167 (337)
||......++.+.++..+|..++..-+. ..-.-...+ ..||+||+++|+++-+..+|.-. ... .-+..++.+
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~P---s~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~ 232 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTP---PVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLE 232 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCH---HHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCH---HHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHH
Confidence 5555566677888888889888865553 222344556 89999999999999765444321 111 112346889
Q ss_pred HHHHHHHHHHHHc
Q 019656 168 VIQRMELLVLSTL 180 (337)
Q Consensus 168 ~I~~mE~~IL~~L 180 (337)
+|..+-..|+..+
T Consensus 233 ~l~~i~~~il~~y 245 (358)
T 2pk2_A 233 LLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888766
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=85.50 E-value=1.4 Score=38.44 Aligned_cols=80 Identities=8% Similarity=-0.035 Sum_probs=52.4
Q ss_pred HHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHH
Q 019656 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQR 171 (337)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~ 171 (337)
+|......++++.++..+|..++..-+.....-...+ ..||+||+++|+++-....|. +-. +. .++.++|..
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~~~--~~~~~~--~~~~~~i~~ 209 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHP---HQLAYAALLISCCNDENTIPK--LLDLIK--STDAFKVIL 209 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCH---HHHHHHHHHHHHTSCTTHHHH--HHHHCC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCH---HHHHHHHHHHHHHhcCCCCCC--Ccchhh--cCCHHHHHH
Confidence 4444555678899999999999998876655556677 999999999999975432110 000 11 345555555
Q ss_pred HHHHHHHH
Q 019656 172 MELLVLST 179 (337)
Q Consensus 172 mE~~IL~~ 179 (337)
+-..|++.
T Consensus 210 ~~~~i~~l 217 (235)
T 1zp2_A 210 CVQRIISI 217 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 27
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=85.11 E-value=1.7 Score=40.54 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCH
Q 019656 188 TPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEI 267 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (337)
..+..|..+...++.. ..+...+..++..+.....+-+.+...|||||||+|.........+ ..+...++++.
T Consensus 128 ~a~~~I~~~~~~L~Lp---~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl----~eI~~~~~v~~ 200 (345)
T 4bbr_M 128 AAFAKITMLCDAAELP---KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF----KEIQSLIHVKT 200 (345)
T ss_dssp HHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH----HHHHHHHTCCT
T ss_pred HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH----HHHHHHhCCCH
Confidence 4566667777777663 4556666666655554444556789999999999997544333222 33344557999
Q ss_pred hHHHHHHHHHHHhHhc
Q 019656 268 EHIYSCYSLMQGIEMG 283 (337)
Q Consensus 268 ~~l~~C~~~i~~l~~~ 283 (337)
.+|..++..|.+.+..
T Consensus 201 keigr~~k~l~~~L~l 216 (345)
T 4bbr_M 201 KEFGKTLNIMKNILRG 216 (345)
T ss_dssp THHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999886653
No 28
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=83.49 E-value=0.76 Score=42.94 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHh
Q 019656 189 PFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIE 268 (337)
Q Consensus 189 p~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (337)
.+.+|..+...++.. +.++..+..++..+.....+-+.+...|||||||+|.+.... +..+..+...++++..
T Consensus 129 a~~~I~~~~~~L~Lp---~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~----prtl~ei~~~~~v~~k 201 (345)
T 3k7a_M 129 AFAKITMLCDAAELP---KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV----ARTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHTTCC---HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS----SCCHHHHHHSSSCCSH
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC----CccHHHHHHHHCCCHH
Confidence 456677777777653 456666666666655555566788999999999999654332 2233444556679999
Q ss_pred HHHHHHHHHHHhHh
Q 019656 269 HIYSCYSLMQGIEM 282 (337)
Q Consensus 269 ~l~~C~~~i~~l~~ 282 (337)
+|..|+..|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=76.29 E-value=6.4 Score=34.64 Aligned_cols=84 Identities=8% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHhHHHhCCChHHH----HHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCC----cccee-eccC
Q 019656 92 EWIFNKRAMFGFQFRTA----YLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPA----LSEFQ-VDDF 162 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~----~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~----l~dl~-i~~~ 162 (337)
+|+......++.+.++. ..|..+++.-+....+-...+ ..+|+||+++|.+.....+.. ...+. ++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~P---S~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t-- 228 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSP---GLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL-- 228 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCH---HHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCH---HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH--
Confidence 34555555666666553 346666665555555556667 899999999999985221111 22333 33
Q ss_pred CCCHHHHHHHHHHHHHHc
Q 019656 163 DFENKVIQRMELLVLSTL 180 (337)
Q Consensus 163 ~~~~~~I~~mE~~IL~~L 180 (337)
.++.++|...-..|.+.+
T Consensus 229 g~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 229 NFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 467888887777666543
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=75.08 E-value=5.9 Score=35.01 Aligned_cols=84 Identities=7% Similarity=-0.100 Sum_probs=55.4
Q ss_pred HHHHHHhHHHhCCCh-HHHHHHHHHHHhhhcccc-cccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHH
Q 019656 91 IEWIFNKRAMFGFQF-RTAYLSVDFLDRFLSKRS-IDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENK 167 (337)
Q Consensus 91 v~Wi~~v~~~~~l~~-~T~~lAv~~~DRfls~~~-v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~ 167 (337)
.+|+......++.+. .+..+|-.+++.-+.... +-...+ ..+|+||+++|++.-+. ++-...+. ++ .++.+
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~P---s~iAaAai~lA~~~~~~-~~w~~~l~~~~--g~~~~ 213 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP---SVIAGAAFHLALYTVTG-QSWPESLIRKT--GYTLE 213 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCH---HHHHHHHHHHHHHHHHS-CCSCHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCH---HHHHHHHHHHHHHHhCC-CcchHHHHHHh--CcCHH
Confidence 456667777777765 666777777776554444 455566 89999999999998554 22223333 33 36788
Q ss_pred HHHHHHHHHHHHc
Q 019656 168 VIQRMELLVLSTL 180 (337)
Q Consensus 168 ~I~~mE~~IL~~L 180 (337)
+|...=..|...+
T Consensus 214 ~i~~~~~~l~~~~ 226 (260)
T 2cch_B 214 SLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877766666543
No 31
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=73.18 E-value=13 Score=31.93 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcc---cccccchhhHHHHHHHHHHHHHhhhhccCCCCccceeeccCCCC
Q 019656 89 DAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSK---RSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFE 165 (337)
Q Consensus 89 ~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~---~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~i~~~~~~ 165 (337)
.+.+-|+.++.+-+++..++--||.+-..|... ++..-.+. |-+|+||+.||+---.. |.++.++..-|....
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q---~dVAAAc~miAae~~~~-PiplaE~r~lD~sL~ 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQ---PDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSLG 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccccccc---HHHHHHHHHHHHHHcCC-CccHHHHHHHhhhhh
Confidence 456677889999999999999999999999864 34444566 99999999999965444 444666653333333
Q ss_pred HHHHHHHHHHHHHHcCC-----ccccCChHHHHHHHHHHhhC
Q 019656 166 NKVIQRMELLVLSTLDW-----KMGSITPFAFLHYFMIKLCG 202 (337)
Q Consensus 166 ~~~I~~mE~~IL~~L~~-----~l~~~Tp~~fl~~f~~~~~~ 202 (337)
.-+..+ ..|+..|+- +|...-.-..|.+|+.+++.
T Consensus 90 Dvelrr--~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~L 129 (260)
T 3h4c_A 90 DVELRR--ADIVRELHLEDSERRLRDTFADNLLVKYILKLGL 129 (260)
T ss_dssp CHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH--HHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 333333 346666654 22222333456666666655
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=72.32 E-value=9.1 Score=35.11 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccC---CCCCHh
Q 019656 192 FLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSC---GSPEIE 268 (337)
Q Consensus 192 fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~---~~~~~~ 268 (337)
+|..+...++.. -....+..+..++...+....+..+.|-.||+||+++|.+.......+......+..- ..+..+
T Consensus 63 ~I~ev~~~l~~~-Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 63 RLLEFCSVFKPA-MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHHCTTT-CCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHH
Confidence 344444444410 1256677778888888888889999999999999999986443322222211111000 002246
Q ss_pred HHHHHHHHHHHh
Q 019656 269 HIYSCYSLMQGI 280 (337)
Q Consensus 269 ~l~~C~~~i~~l 280 (337)
+|..+-..|.+-
T Consensus 142 ~Il~~E~~iL~~ 153 (323)
T 1jkw_A 142 QILEYELLLIQQ 153 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677776666654
No 33
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=71.08 E-value=6.9 Score=34.83 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=43.8
Q ss_pred HHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhcc
Q 019656 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEEC 149 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~ 149 (337)
+|+.......+++.++..+|-.+++.-+....+-...+ ..+|+||+++|++.-+.
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~P---s~iAaAai~lA~~~l~~ 194 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPP---SQIAAGAFSLALKILDN 194 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCT---THHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCH---HHHHHHHHHHHHHHhCC
Confidence 56666677778888888888888888776666666677 89999999999998554
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=68.04 E-value=9.6 Score=33.54 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=50.7
Q ss_pred HHHHHhHHHhCCChHH----HHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCC----C-Ccccee-ecc
Q 019656 92 EWIFNKRAMFGFQFRT----AYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQV----P-ALSEFQ-VDD 161 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T----~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~----p-~l~dl~-i~~ 161 (337)
+|+......++.+.++ ..+|..+++.-+....+-...+ ..+|+||+++|.+.-+..+ + -...+. +
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~P---S~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~-- 227 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPA---SIISAAGCALLVPANVIPQDTHSGGVVPQLASI-- 227 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCH---HHHHHHHHHHHCCGGGSCC-----CHHHHHHHH--
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCH---HHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH--
Confidence 4566666666666554 2446666665555455555666 8999999999999865421 1 112222 2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 019656 162 FDFENKVIQRMELLVLST 179 (337)
Q Consensus 162 ~~~~~~~I~~mE~~IL~~ 179 (337)
..++.++|..+=..|.+.
T Consensus 228 t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 228 LGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 246777777766666554
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=62.18 E-value=11 Score=34.34 Aligned_cols=84 Identities=6% Similarity=-0.020 Sum_probs=45.2
Q ss_pred HHHHhHHHhCCChHH----HHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCc----ccee-eccCC
Q 019656 93 WIFNKRAMFGFQFRT----AYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPAL----SEFQ-VDDFD 163 (337)
Q Consensus 93 Wi~~v~~~~~l~~~T----~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l----~dl~-i~~~~ 163 (337)
|+......++.+.+. ...|-.+++.-+....+-...+ ..+|++|+++|.+.-+..++.. ..+. ++ .
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~P---S~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g 248 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPP---SMIATGSIGAAVQGLGACSMSGDELTELLAGIT--G 248 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCH---HHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--T
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCH---HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--C
Confidence 444444444444332 2344555554444444555666 8899999999999755433211 1111 22 3
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 019656 164 FENKVIQRMELLVLSTLD 181 (337)
Q Consensus 164 ~~~~~I~~mE~~IL~~L~ 181 (337)
++.++|..+-..|+..+.
T Consensus 249 ~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 249 TEVDCLRACQEQIEAALR 266 (306)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 567777766666655543
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=61.59 E-value=27 Score=30.86 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCC-chhhhhhhcccccCCCCCHhHHHHHHHHHHHhHh
Q 019656 208 ELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLT-RETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 208 ~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~ 282 (337)
+.+..+..++...+....+....+-.||+||+++|.+.... ....... ..+.. ..++.++|.++-..|.+...
T Consensus 76 ~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~-~~~~~-~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 76 EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKL-CIYTD-NSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTT-TSSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHH-HHHhc-CCCCHHHHHHHHHHHHHHCC
Confidence 34555666777776666777788999999999999854322 1111111 11111 24889999999888877654
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=56.19 E-value=52 Score=29.23 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhh-hhccCCcHHHHHHHHHHHHHcCCCC-chhhhhhhcccccC--CCCCHhHHHHHHHHHHHhHh
Q 019656 207 KELVSRAVELIMTITKV-INLMNHRPSAIAAAAVLAASDGQLT-RETIELKMNVFPSC--GSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~-~~~l~~~PS~IAaAal~lA~~~~~~-~~~~~~~~~~l~~~--~~~~~~~l~~C~~~i~~l~~ 282 (337)
.+.+..+..++...+.. ........-.+|+||+++|.+.... ...+. .+... ..++.++|.++-..|.+...
T Consensus 68 ~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~----~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 68 RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH----QFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH----HHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHH----HHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 55666667777776655 3556678899999999999754321 11111 12122 24889999999888887654
No 38
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=56.03 E-value=48 Score=24.69 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=52.0
Q ss_pred HHHhHHHhCCChHHHHHHHHHHHhhhccc------ccccchhhHHHHHHHHHHHHHhhhhccCCCCccceeeccCCCCHH
Q 019656 94 IFNKRAMFGFQFRTAYLSVDFLDRFLSKR------SIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENK 167 (337)
Q Consensus 94 i~~v~~~~~l~~~T~~lAv~~~DRfls~~------~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~i~~~~~~~~ 167 (337)
|.+++..||+.. ..-.|-.++++|=..- .++-+++ ..+++|+|.|||.--..+++.+=+..+ ...+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P----~f~aaA~~~acr~~K~kVdK~KL~~~s--~lk~~ 78 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRP----LFTSAALLSACKILKLKVDKNKMVATS--GVKKA 78 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSH----HHHHHHHHHHHHHTTCCCCHHHHHHTT--CBCHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccccc----HHHHHHHHHHHHHHccCCCHHHHHHHH--CCCHH
Confidence 457888888776 6777889999998542 3445564 667889999999987766643322223 34566
Q ss_pred HHHHHHHHHH
Q 019656 168 VIQRMELLVL 177 (337)
Q Consensus 168 ~I~~mE~~IL 177 (337)
++.+.+..+-
T Consensus 79 ~f~~l~~~~e 88 (95)
T 3m03_A 79 IFDRLCKQLE 88 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=36.88 E-value=79 Score=27.61 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCc-hhhhhhhcccccCCCCCHhHHHHHHHHHHHhHh
Q 019656 208 ELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTR-ETIELKMNVFPSCGSPEIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 208 ~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l~~ 282 (337)
+.+..++.+++..+..........-.+|++|+++|.+..... ..... +..+.. ..++.++|.+.=..|.+...
T Consensus 68 eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~-l~~~~~-~~yt~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 68 NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQ-LAYLCG-GATTADKLLTLEVKSLDTLS 141 (252)
T ss_dssp THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHH-HHHHHC-TTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHhC-CCCCHHHHHHHHHHHHHHCC
Confidence 345556667777666666666778899999999998632211 11111 111111 24888888887777766543
Done!