Query 019656
Match_columns 337
No_of_seqs 320 out of 1852
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 05:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019656.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019656hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g3nc1 a.74.1.1 (C:16-147) Vi 100.0 4.9E-32 3.6E-36 222.4 11.8 129 50-185 3-132 (132)
2 d1w98b2 a.74.1.1 (B:88-227) G1 100.0 1.5E-31 1.1E-35 221.6 14.6 130 48-185 9-140 (140)
3 d2cchb1 a.74.1.1 (B:181-308) C 100.0 1.5E-31 1.1E-35 218.5 12.0 127 52-186 1-128 (128)
4 d1bu2a1 a.74.1.1 (A:22-148) Vi 100.0 2.2E-29 1.6E-33 205.0 12.6 125 53-185 2-127 (127)
5 d1f5qb1 a.74.1.1 (B:6-146) Vir 99.9 1.1E-28 7.8E-33 204.4 8.6 128 50-185 12-140 (141)
6 d2i53a1 a.74.1.1 (A:14-157) Cy 99.8 2.7E-21 1.9E-25 160.1 10.3 98 85-186 35-144 (144)
7 d1jkwa1 a.74.1.1 (A:11-161) Cy 99.8 7.7E-20 5.6E-24 152.4 10.3 98 85-186 45-150 (151)
8 d2ivxa1 a.74.1.1 (A:7-149) Cyc 99.8 1.7E-19 1.2E-23 148.8 9.0 98 85-186 29-143 (143)
9 d2cchb2 a.74.1.1 (B:309-432) C 99.1 3.7E-11 2.7E-15 95.7 6.1 93 187-285 1-94 (124)
10 d2i53a2 a.74.1.1 (A:158-267) C 98.6 5.4E-08 3.9E-12 75.2 8.8 95 188-284 2-104 (110)
11 d1w98b1 a.74.1.1 (B:228-357) G 98.6 3E-07 2.2E-11 71.7 11.5 110 186-306 1-129 (130)
12 d2ivxa2 a.74.1.1 (A:150-262) C 98.5 1.3E-07 9.4E-12 73.3 8.7 92 188-284 2-98 (113)
13 d1vola1 a.74.1.2 (A:113-207) T 98.1 1.2E-05 8.4E-10 59.9 10.2 89 90-184 5-94 (95)
14 d1aisb1 a.74.1.2 (B:1108-1205) 98.0 2.3E-05 1.6E-09 58.6 9.7 87 90-182 5-92 (98)
15 d1jkwa2 a.74.1.1 (A:162-287) C 97.9 2.5E-05 1.8E-09 61.2 9.2 94 188-283 1-100 (126)
16 d1aisb2 a.74.1.2 (B:1206-1300) 97.7 6.8E-05 5E-09 55.5 7.9 87 92-184 5-92 (95)
17 d1aisb2 a.74.1.2 (B:1206-1300) 97.6 7.2E-05 5.2E-09 55.4 7.3 90 187-283 1-90 (95)
18 d1vola2 a.74.1.2 (A:208-316) T 97.6 8.8E-05 6.4E-09 56.4 7.2 90 186-282 1-90 (109)
19 d1vola2 a.74.1.2 (A:208-316) T 97.1 0.0003 2.2E-08 53.3 5.8 85 91-181 5-90 (109)
20 d1aisb1 a.74.1.2 (B:1108-1205) 96.8 0.0018 1.3E-07 47.8 7.5 88 188-282 4-91 (98)
21 d1vola1 a.74.1.2 (A:113-207) T 96.6 0.0054 3.9E-07 44.7 8.6 88 188-282 4-91 (95)
22 d2ivxa2 a.74.1.1 (A:150-262) C 96.5 0.011 8.2E-07 44.6 10.3 85 93-180 6-95 (113)
23 d2i53a2 a.74.1.1 (A:158-267) C 94.0 0.056 4.1E-06 40.2 6.4 72 106-180 23-101 (110)
24 d2i53a1 a.74.1.1 (A:14-157) Cy 80.9 1.9 0.00014 32.6 6.7 53 191-246 42-94 (144)
25 d1f5qb2 a.74.1.1 (B:147-252) V 80.6 3.6 0.00026 27.9 7.2 62 216-279 31-92 (106)
26 d2ivxa1 a.74.1.1 (A:7-149) Cyc 77.2 2.9 0.00021 31.4 6.7 53 191-246 36-88 (143)
27 d1jkwa1 a.74.1.1 (A:11-161) Cy 75.2 4.1 0.0003 31.0 7.2 40 207-246 67-106 (151)
28 d2cchb1 a.74.1.1 (B:181-308) C 67.9 6.5 0.00048 28.8 6.7 72 207-280 49-121 (128)
29 d1bu2a1 a.74.1.1 (A:22-148) Vi 60.2 17 0.0012 26.5 7.7 85 191-280 36-121 (127)
30 d1f5qb1 a.74.1.1 (B:6-146) Vir 54.8 13 0.00098 27.6 6.4 85 191-280 49-134 (141)
31 d1w98b2 a.74.1.1 (B:88-227) G1 45.2 43 0.0031 24.4 8.0 72 207-280 61-134 (140)
32 d1g3nc1 a.74.1.1 (C:16-147) Vi 43.8 27 0.002 25.4 6.5 72 207-280 54-126 (132)
33 d2cchb2 a.74.1.1 (B:309-432) C 43.4 33 0.0024 24.6 6.9 74 100-179 14-89 (124)
34 d1jkwa2 a.74.1.1 (A:162-287) C 35.9 41 0.003 24.3 6.3 39 108-149 27-65 (126)
No 1
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=99.97 E-value=4.9e-32 Score=222.35 Aligned_cols=129 Identities=19% Similarity=0.307 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchh
Q 019656 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (337)
Q Consensus 50 ~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~ 129 (337)
+++++++|++.|.++.|+++|+.. .+.++++.+|..+|+||.+|+..|+++++|+++||+|||||+++..+++++.
T Consensus 3 ~~~i~~~l~~~E~~~~p~~~y~~~----~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~~l 78 (132)
T d1g3nc1 3 EDRIFYNILEIEPRFLTSDSVFGT----FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHF 78 (132)
T ss_dssp HHHHHHHHHHHGGGGCCCGGGHHH----HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred hHHHHHHHHHHHHHHCCChHHHHh----cCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHHHH
Confidence 678999999999999998776532 2346889999999999999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccc
Q 019656 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185 (337)
Q Consensus 130 w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~ 185 (337)
||+|+|||+||+|+||..+|.+++++ ++++.|++++|.+||+.||++|+|++.
T Consensus 79 ---qLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~ 132 (132)
T d1g3nc1 79 ---QKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE 132 (132)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred ---HHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence 99999999999999999999999999 999999999999999999999999974
No 2
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=1.5e-31 Score=221.61 Aligned_cols=130 Identities=25% Similarity=0.456 Sum_probs=118.8
Q ss_pred CChHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcc-ccccc
Q 019656 48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSK-RSIDD 126 (337)
Q Consensus 48 ~~~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~-~~v~~ 126 (337)
.+.+|++++|+++|.++.++.+|+..+ ..+++++|..+|+||++|+.+|+++++|+++||+|||||++. ..+++
T Consensus 9 ~~~~dI~~~l~~~E~~~~~~~~~l~~q-----~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~~ 83 (140)
T d1w98b2 9 ANREEVWKIMLNKEKTYLRDQHFLEQH-----PLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVK 83 (140)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGGC-----TTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCG
T ss_pred cCHHHHHHHHHHHHHhhCCChHHHhCC-----CCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccccccH
Confidence 468999999999999998877766443 346779999999999999999999999999999999999985 45787
Q ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccc
Q 019656 127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185 (337)
Q Consensus 127 ~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~ 185 (337)
++. ||+|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+|+
T Consensus 84 ~~l---qL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln 140 (140)
T d1w98b2 84 TLL---QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140 (140)
T ss_dssp GGH---HHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHH---hHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 776 99999999999999999999999999 999999999999999999999999985
No 3
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.97 E-value=1.5e-31 Score=218.47 Aligned_cols=127 Identities=29% Similarity=0.446 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhH
Q 019656 52 EFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWA 131 (337)
Q Consensus 52 e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~ 131 (337)
|++++|+++|.++.|+.+|+..| .++++.+|..+|+||++|+.+++++++|+++||+|||||++...++++++
T Consensus 1 dI~~~l~~~E~~~~p~~~~l~~q-----~~i~~~~R~~li~W~~~v~~~~~l~~~t~~lAv~llDr~l~~~~i~~~~~-- 73 (128)
T d2cchb1 1 DIHTYLREMEVKCKPKVGYMKKQ-----PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL-- 73 (128)
T ss_dssp HHHHHHHHHHHHTCCCTTGGGGC-----SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH--
T ss_pred CHHHHHHHHHhhhCCCchhhhCC-----CCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcccCCchHHH--
Confidence 68999999999999988876533 34778999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCcccc
Q 019656 132 IRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGS 186 (337)
Q Consensus 132 lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~~ 186 (337)
||+|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|++.+
T Consensus 74 -qLi~~~cl~iAsK~ee~~~~~l~~l~~~~~~~~t~~~i~~mE~~IL~~L~~~l~a 128 (128)
T d2cchb1 74 -QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAA 128 (128)
T ss_dssp -HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCC
T ss_pred -HHHHHHHHHHHHHHHhccCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCeecC
Confidence 99999999999999999999999999 8999999999999999999999999863
No 4
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=99.96 E-value=2.2e-29 Score=204.98 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=111.1
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHH
Q 019656 53 FIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAI 132 (337)
Q Consensus 53 ~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~l 132 (337)
++++|..+|.. .|+..++.. .+.++++++|..+|+||++|+.+|+++++|+|+||+|||||++...+++++.
T Consensus 2 ~~~~l~~~e~~-~p~~~~~~~----~q~~it~~~R~~lidWl~~v~~~~~l~~eTl~lAv~llDryl~~~~i~~~~l--- 73 (127)
T d1bu2a1 2 VLNNLKLRELL-LPKFTSLWE----IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL--- 73 (127)
T ss_dssp CHHHHHHTTTS-SCCCSSTTT----TCSSSCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTH---
T ss_pred hHHHHHHHHHh-CCCchHHhh----cCCcCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcccccccHHHH---
Confidence 46788777754 455444321 2345788999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccc
Q 019656 133 RLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185 (337)
Q Consensus 133 qLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~ 185 (337)
||+|+|||+||+|+||..+|.+.+++ ++++.|+.++|.+||+.||++|+|++.
T Consensus 74 qLi~~tcL~IAsK~ee~~~~~l~~l~~~~~~~~t~~ei~~mE~~IL~~L~~dl~ 127 (127)
T d1bu2a1 74 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTE 127 (127)
T ss_dssp HHHHHHHHHHHHHHSSSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999 999999999999999999999999974
No 5
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=99.95 E-value=1.1e-28 Score=204.42 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchh
Q 019656 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (337)
Q Consensus 50 ~~e~~~~L~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~ 129 (337)
++++.+.+...|........+. ..++.++.++|..+|+||++|+.+|+++++|+|+||+|||||++...++++++
T Consensus 12 ~~~~~~~i~~~e~~~~~~~~~~-----~~~~~it~~~R~~lvdWm~~v~~~~~l~~etl~lAv~llDrfls~~~i~~~~l 86 (141)
T d1f5qb1 12 EEDCRQMIYRSEREHDARMVGV-----NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENY 86 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-----SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred hHHHHHHHHHHHHHhccccccc-----ccCccCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhhccccHHHH
Confidence 5667776666666543332222 22346778999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHHHHcCCccc
Q 019656 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185 (337)
Q Consensus 130 w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL~~L~~~l~ 185 (337)
||+|+|||+||+|+||..+|.+.++. ++++.|++++|.+||+.||++|+|.++
T Consensus 87 ---qL~a~tcL~IAsK~ee~~~~~~~~l~~~~~~~yt~~ei~~mE~~IL~~L~w~~~ 140 (141)
T d1f5qb1 87 ---QSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVAD 140 (141)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCC
T ss_pred ---HHHHHHHHHHHHHHHhcCcccHHHHHHHhcCCCCHHHHHHHHHHHHHHCCccCC
Confidence 99999999999999999999999999 999999999999999999999999985
No 6
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=2.7e-21 Score=160.07 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-e----
Q 019656 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-V---- 159 (337)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i---- 159 (337)
.+|..+++||.+++.+++++..|+++|+.|||||++++.+.+.++ +++|+||||||+|+||. ++++.+++ +
T Consensus 35 ~~R~~~~~~i~~~~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~---~lva~acl~LA~K~eE~-~~~l~~vi~~~~~~ 110 (144)
T d2i53a1 35 RYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPR---YVTGACCLFLAGKVEET-PKKCKDIIKTARSL 110 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHhhcc-cccHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988 99999999999999998 44566653 2
Q ss_pred -------ccCCCCHHHHHHHHHHHHHHcCCcccc
Q 019656 160 -------DDFDFENKVIQRMELLVLSTLDWKMGS 186 (337)
Q Consensus 160 -------~~~~~~~~~I~~mE~~IL~~L~~~l~~ 186 (337)
..+.+++++|++||+.||++|+|++++
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V 144 (144)
T d2i53a1 111 LNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQV 144 (144)
T ss_dssp SCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHCCCeeeC
Confidence 336678899999999999999999974
No 7
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=7.7e-20 Score=152.37 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhHHHhC--CChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-e--
Q 019656 85 CARLDAIEWIFNKRAMFG--FQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-V-- 159 (337)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i-- 159 (337)
.+|+..++||.+++.+|+ ++++|+++|++|||||+++.++.+.++ |++|+|||+||||+||. ++.+.+++ .
T Consensus 45 ~l~~~~~~~l~~~~~~~k~~l~~~~~~tA~~~~~RF~~~~s~~~~~~---~li~~acl~LA~K~ee~-~~~~~~~~~~~~ 120 (151)
T d1jkwa1 45 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHP---RIIMLTCAFLACKVDEF-NVSSPQFVGNLR 120 (151)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhcCccccccH---HHHHHHHHHHHHHHccc-CCCHHHHHHHHH
Confidence 689999999999999886 889999999999999999999999998 99999999999999997 56677775 2
Q ss_pred ---ccCCCCHHHHHHHHHHHHHHcCCcccc
Q 019656 160 ---DDFDFENKVIQRMELLVLSTLDWKMGS 186 (337)
Q Consensus 160 ---~~~~~~~~~I~~mE~~IL~~L~~~l~~ 186 (337)
+++.+++++|++||..||++|+|+|.+
T Consensus 121 ~~~~~~~~~~~~i~~~E~~iL~~L~f~L~V 150 (151)
T d1jkwa1 121 ESPLGQEKALEQILEYELLLIQQLNFHLIV 150 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hhcccccccHHHHHHHHHHHHHHcCCeeee
Confidence 235578999999999999999999965
No 8
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=1.7e-19 Score=148.77 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-ec---
Q 019656 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD--- 160 (337)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~--- 160 (337)
..|..+++||.+++.+++++++|+++|+.|||||++++++.+.++ +++|+||||||+|+||.. .++.+++ +.
T Consensus 29 ~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~---~~va~acl~LA~K~eE~~-~~~~~ii~~~~~~ 104 (143)
T d2ivxa1 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNK---NIISSTALFLAAKVEEQA-RKLEHVIKVAHAC 104 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCH---HHHHHHHHHHHHHhcccc-ccHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888 999999999999999983 3455543 11
Q ss_pred -------------cCCCCHHHHHHHHHHHHHHcCCcccc
Q 019656 161 -------------DFDFENKVIQRMELLVLSTLDWKMGS 186 (337)
Q Consensus 161 -------------~~~~~~~~I~~mE~~IL~~L~~~l~~ 186 (337)
.+.+.+++|+.||+.||++|+|++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V 143 (143)
T d2ivxa1 105 LHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI 143 (143)
T ss_dssp HCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hcccchhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence 13346789999999999999999874
No 9
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.10 E-value=3.7e-11 Score=95.66 Aligned_cols=93 Identities=16% Similarity=0.021 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhh-hccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCC
Q 019656 187 ITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVI-NLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSP 265 (337)
Q Consensus 187 ~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~ 265 (337)
|||+.||++|.......+ ......+..++..++.++ .|++|+||+||||||++|+.... ...| ...+..++||
T Consensus 1 PT~~~FL~ry~~~~~~~d--~~~~~la~Yl~ElsLl~~~~~l~~~PS~lAaaai~lar~~l~-~~~W---~~~L~~~t~y 74 (124)
T d2cchb2 1 PTVNQFLTQYFLHQQPAN--CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT-GQSW---PESLIRKTGY 74 (124)
T ss_dssp CCHHHHHHHHHTTCSSCC--HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH-SCCS---CHHHHHHHCC
T ss_pred CchhHHHHHHHHHHccCc--HHHHHHHHHHHHHHHHhHHHHHccChHHHHHHHHHHHHHHhC-CCCc---hHHHHHHhCC
Confidence 899999988755443322 333333344555568887 59999999999999999975332 2234 4556678899
Q ss_pred CHhHHHHHHHHHHHhHhccC
Q 019656 266 EIEHIYSCYSLMQGIEMGKL 285 (337)
Q Consensus 266 ~~~~l~~C~~~i~~l~~~~~ 285 (337)
+.++|.+|++.|.+++.+..
T Consensus 75 ~~~~l~~c~~~L~~~~~~~~ 94 (124)
T d2cchb2 75 TLESLKPCLMDLHQTYLKAP 94 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998875543
No 10
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.63 E-value=5.4e-08 Score=75.25 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCC-Cchhh------hhhhccc
Q 019656 188 TPFAFLHYFMIKLCGECRP-KELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQL-TRETI------ELKMNVF 259 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~-~~~~~------~~~~~~l 259 (337)
+|+.+|-.|++.++..... +++.+.++.++.+++.+..++.|+|.+||+|||++|..... ..... ..|+..+
T Consensus 2 HP~~~L~~~~~~l~~~~~~~~~l~q~AW~~lNDs~rT~lcL~~~P~~IA~a~I~lA~~~~~~~ip~~~~~~~~~~W~~~f 81 (110)
T d2i53a2 2 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 81 (110)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred CCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCchhccCcHHHHHHHHHHHHHHhCCCCCCcccCcccccHHHHH
Confidence 7999999999998764322 46778889999999999999999999999999999974321 11111 1122211
Q ss_pred ccCCCCCHhHHHHHHHHHHHhHhcc
Q 019656 260 PSCGSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 260 ~~~~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
..+++.++|.+++..|.++|...
T Consensus 82 --~~dvt~e~i~~i~~~il~lY~~~ 104 (110)
T d2i53a2 82 --VQDVPVDVLEDICHQILDLYSQG 104 (110)
T ss_dssp --SSSCCHHHHHHHHHHHHTTTSSS
T ss_pred --HccCCHHHHHHHHHHHHHHHccc
Confidence 13799999999999999999754
No 11
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.57 E-value=3e-07 Score=71.70 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=79.5
Q ss_pred cCChHHHHHHHHHHhhCCCC--------hHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhc
Q 019656 186 SITPFAFLHYFMIKLCGECR--------PKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMN 257 (337)
Q Consensus 186 ~~Tp~~fl~~f~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~ 257 (337)
++|+..+|..|++....+.. ......+..++++.|+.|..+++|+-|+|||||++.-. .+ ...
T Consensus 1 PiT~~~WLn~YmQl~~~~~~~~~l~Pqys~~~fiq~aqLLDLC~LDi~sl~fsYsvLAAaAl~h~~----~~-e~~---- 71 (130)
T d1w98b1 1 PLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----SS-ELM---- 71 (130)
T ss_dssp CCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----CH-HHH----
T ss_pred CcchhHHHHHHHHHHhcCCccceecCCCCHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHcc----cH-HHH----
Confidence 47999999999998765432 25566778999999999999999999999999999652 11 221
Q ss_pred ccccCCCCCHhHHHHHHHHHHHhHhcc-------CCCCCccc---cCC-CCCCCcccccc
Q 019656 258 VFPSCGSPEIEHIYSCYSLMQGIEMGK-------LNTPNSVI---SHS-LSSTSSIDVLK 306 (337)
Q Consensus 258 ~l~~~~~~~~~~l~~C~~~i~~l~~~~-------~~~~~~~~---~~~-~~~~s~~~v~~ 306 (337)
...+|+++++|.+|+++|.-+...- .++.++++ +|| ++|.+.++.++
T Consensus 72 --~kvSGl~w~~l~~Cv~WM~PF~~vi~~~~~~~lk~f~~i~~dd~HnIQtH~~~l~mld 129 (130)
T d1w98b1 72 --QKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLD 129 (130)
T ss_dssp --HHHSCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCTTSCGGGGGGBCCCCCHHHHHT
T ss_pred --HHccCccHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCccCccceeccChHhhhc
Confidence 1346999999999999998865321 23333333 444 66666665543
No 12
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.54 E-value=1.3e-07 Score=73.28 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh-hhhccCCcHHHHHHHHHHHHHcCC---CCchh-hhhhhcccccC
Q 019656 188 TPFAFLHYFMIKLCGECRPKELVSRAVELIMTITK-VINLMNHRPSAIAAAAVLAASDGQ---LTRET-IELKMNVFPSC 262 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~l~~~PS~IAaAal~lA~~~~---~~~~~-~~~~~~~l~~~ 262 (337)
+|+.||-.|++.++. .+++.+.++.++.+.+. +..++.|+|.+||+|||++|.... .+... -..|+..+ -
T Consensus 2 HPhk~ll~~~k~l~~---~~~l~q~AW~~lnDs~r~T~lcL~~~P~~IA~a~I~LA~~~~~~~~p~~~~~~~Ww~~f--d 76 (113)
T d2ivxa2 2 HPHTDVVKCTQLVRA---SKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--D 76 (113)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--C
T ss_pred CCcHHHHHHHHHhCC---ChHHHHHHHHHHHHHhccCCeeeecCcHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH--c
Confidence 799999999999864 37889999999999986 677899999999999999997422 11110 01222221 1
Q ss_pred CCCCHhHHHHHHHHHHHhHhcc
Q 019656 263 GSPEIEHIYSCYSLMQGIEMGK 284 (337)
Q Consensus 263 ~~~~~~~l~~C~~~i~~l~~~~ 284 (337)
.+++.++|.+.+..|.++|...
T Consensus 77 ~~vt~e~i~~i~~~il~lYe~~ 98 (113)
T d2ivxa2 77 PTVTLELLDELTHEFLQILEKT 98 (113)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHC
Confidence 3688999999999999999764
No 13
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.10 E-value=1.2e-05 Score=59.88 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=76.2
Q ss_pred HHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHH
Q 019656 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKV 168 (337)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~ 168 (337)
+..-|-.++..++++..+.-.|..++.+......+....+ ..+++||+|+||+.++. |.++.++. +. ..+..+
T Consensus 5 a~~~I~~~~~~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~~---~~i~AA~iY~acr~~~~-p~t~~eIa~~~--~i~~~~ 78 (95)
T d1vola1 5 AFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRAN---DAIASACLYIACRQEGV-PRTFKEICAVS--RISKKE 78 (95)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCCCTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHTTT--CSCHHH
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhhhhcCCCh---HHHHHHHHHHHHHHcCC-CCCHHHHHHHh--CCCHHH
Confidence 4466788999999999999999999999998776666666 99999999999998876 66677776 44 478999
Q ss_pred HHHHHHHHHHHcCCcc
Q 019656 169 IQRMELLVLSTLDWKM 184 (337)
Q Consensus 169 I~~mE~~IL~~L~~~l 184 (337)
|.+..+.|.+.|+.++
T Consensus 79 i~k~~k~i~~~L~~~v 94 (95)
T d1vola1 79 IGRCFKLILKALETSV 94 (95)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCcC
Confidence 9999999999998776
No 14
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.97 E-value=2.3e-05 Score=58.57 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred HHHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHH
Q 019656 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKV 168 (337)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~ 168 (337)
+..-|-+++..++++..+...|..++.+...........+ ..++++|+|+||+.++. +.++.|+. +. ..+..+
T Consensus 5 a~~~I~~~~~~L~L~~~i~~~A~~i~k~~~~~~~~~g~~~---~~iaaA~iY~Acr~~~~-~~t~~eIa~~~--~is~~t 78 (98)
T d1aisb1 5 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSI---ESVMAACVYAACRLLKV-PRTLDEIADIA--RVDKKE 78 (98)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCH---HHHHHHHHHHHHHHHTC-CCCHHHHHHHT--TSCHHH
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhhhhcCCCH---HHHHHHHHHHHHHHcCC-CCCHHHHHHHH--CCCHHH
Confidence 4556888999999999999999999999988777666666 99999999999999977 56677876 54 478999
Q ss_pred HHHHHHHHHHHcCC
Q 019656 169 IQRMELLVLSTLDW 182 (337)
Q Consensus 169 I~~mE~~IL~~L~~ 182 (337)
|.+..+.|++.|+-
T Consensus 79 i~k~yk~i~~~L~l 92 (98)
T d1aisb1 79 IGRSYRFIARNLNL 92 (98)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999873
No 15
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.91 E-value=2.5e-05 Score=61.23 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHhhC----CCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhccccc--
Q 019656 188 TPFAFLHYFMIKLCG----ECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPS-- 261 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~-- 261 (337)
+||+.|..|+..+.. ......+...++.++.+++.+-.++.|+||+||+|||++|...... .++.+.....+
T Consensus 1 HPyRpl~g~l~dl~~~~~~~~~~~~l~~~a~~~lnds~~Td~~l~y~P~qIalaal~~a~~~~~~--~l~~y~~~~~~~~ 78 (126)
T d1jkwa2 1 NPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI--TMESYLSESLMLK 78 (126)
T ss_dssp CSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC--CCTTHHHHHTTSC
T ss_pred CCCccHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHHHcCCeeeeeCHHHHHHHHHHHHHHHcCC--CHHHHHHHHhccc
Confidence 689988888766532 2333667788899999998888999999999999999999743221 11211111111
Q ss_pred CCCCCHhHHHHHHHHHHHhHhc
Q 019656 262 CGSPEIEHIYSCYSLMQGIEMG 283 (337)
Q Consensus 262 ~~~~~~~~l~~C~~~i~~l~~~ 283 (337)
-...+..+|.+.++.|..++..
T Consensus 79 ~~~~~~~~l~~~i~~i~~l~~~ 100 (126)
T d1jkwa2 79 ENRTCLSQLLDIMKSMRNLVKK 100 (126)
T ss_dssp SSSCCTHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHc
Confidence 1234456677777777777654
No 16
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.67 E-value=6.8e-05 Score=55.52 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHH
Q 019656 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQ 170 (337)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~ 170 (337)
+||-+++..++++..+.-.|..++.+.....-+....+ ..++++|+|+||+.... +.++.++. ++ ..+..+|.
T Consensus 5 d~I~R~~~~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p---~~vaAA~iY~a~r~~~~-~~t~~eIa~~~--~vs~~tI~ 78 (95)
T d1aisb2 5 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP---AGLVAAALYIASLLEGE-KRTQREVAEVA--RVTEVTVR 78 (95)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHH--TCCHHHHH
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCcH---HhHHHHHHHHHHHHcCC-CcCHHHHHHHH--CCCHHHHH
Confidence 78999999999999999999999999888777766667 99999999999999876 45677766 55 36888999
Q ss_pred HHHHHHHHHcCCcc
Q 019656 171 RMELLVLSTLDWKM 184 (337)
Q Consensus 171 ~mE~~IL~~L~~~l 184 (337)
+.-+.+.+.|+..+
T Consensus 79 ~~yk~l~~~l~~~~ 92 (95)
T d1aisb2 79 NRYKELVEKLKIKV 92 (95)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999998765
No 17
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.61 E-value=7.2e-05 Score=55.41 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCC
Q 019656 187 ITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPE 266 (337)
Q Consensus 187 ~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~ 266 (337)
+.|-+|+.+|...++.. .++...+..++..+.......+.+|..+||||||+|......... ...+....|++
T Consensus 1 i~P~d~I~R~~~~L~L~---~~i~~~A~~i~~~~~~~~~~~Gr~p~~vaAA~iY~a~r~~~~~~t----~~eIa~~~~vs 73 (95)
T d1aisb2 1 VKPTDYVNKFADELGLS---EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRT----QREVAEVARVT 73 (95)
T ss_dssp CCGGGGHHHHHHHHTCC---HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCC----HHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC---HHHHHHHHHHHHHHHHcCCcCCCcHHhHHHHHHHHHHHHcCCCcC----HHHHHHHHCCC
Confidence 47899999999999874 455566666555554444555688999999999999754332221 23345556899
Q ss_pred HhHHHHHHHHHHHhHhc
Q 019656 267 IEHIYSCYSLMQGIEMG 283 (337)
Q Consensus 267 ~~~l~~C~~~i~~l~~~ 283 (337)
...|..|++.|.+...-
T Consensus 74 ~~tI~~~yk~l~~~l~~ 90 (95)
T d1aisb2 74 EVTVRNRYKELVEKLKI 90 (95)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999876653
No 18
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.56 E-value=8.8e-05 Score=56.40 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=64.5
Q ss_pred cCChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCC
Q 019656 186 SITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSP 265 (337)
Q Consensus 186 ~~Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~ 265 (337)
..||.+|+.+|...++.. ..+...+..++..+.......+-.|..|||||+|+|......... ...++...|+
T Consensus 1 ~i~~~d~i~Rf~s~L~L~---~~i~~~A~~i~~~~~~~~~~~Gr~p~~iaAa~iY~a~r~~~~~~t----~~eIa~~~~v 73 (109)
T d1vola2 1 LITTGDFMSRFCSNLCLP---KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRT----QKEIGDIAGV 73 (109)
T ss_dssp CCCGGGTHHHHHHHHTCC---HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCC----HHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcCcC---HHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHcCCCCC----HHHHHHHHCC
Confidence 368999999999999874 345555555555444444556678999999999999754433222 2344556789
Q ss_pred CHhHHHHHHHHHHHhHh
Q 019656 266 EIEHIYSCYSLMQGIEM 282 (337)
Q Consensus 266 ~~~~l~~C~~~i~~l~~ 282 (337)
+..+|..|++.|.....
T Consensus 74 s~~tI~k~yk~l~~~~~ 90 (109)
T d1vola2 74 ADVTIRQSYRLIYPRAP 90 (109)
T ss_dssp CHHHHHHHHHHHGGGHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999876544
No 19
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.13 E-value=0.0003 Score=53.25 Aligned_cols=85 Identities=6% Similarity=0.034 Sum_probs=70.2
Q ss_pred HHHHHHhHHHhCCChHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHH
Q 019656 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (337)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I 169 (337)
.|||-+.+..++++..+.-.|..++.+.....-+....+ ..++++|+|+||+.... +.+++++. ++ ..+..+|
T Consensus 5 ~d~i~Rf~s~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p---~~iaAa~iY~a~r~~~~-~~t~~eIa~~~--~vs~~tI 78 (109)
T d1vola2 5 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSP---ISVAAAAIYMASQASAE-KRTQKEIGDIA--GVADVTI 78 (109)
T ss_dssp GGTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCSTTCCH---HHHHHHHHHHHHHTSSS-CCCHHHHHHHH--TCCHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCCH---HHHHHHHHHHHHHHcCC-CCCHHHHHHHH--CCCHHHH
Confidence 478999999999999999999999999998877776667 99999999999998776 55677776 55 3678888
Q ss_pred HHHHHHHHHHcC
Q 019656 170 QRMELLVLSTLD 181 (337)
Q Consensus 170 ~~mE~~IL~~L~ 181 (337)
.+.-+.|...++
T Consensus 79 ~k~yk~l~~~~~ 90 (109)
T d1vola2 79 RQSYRLIYPRAP 90 (109)
T ss_dssp HHHHHHHGGGHH
T ss_pred HHHHHHHHHHHH
Confidence 888777765543
No 20
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=96.82 E-value=0.0018 Score=47.76 Aligned_cols=88 Identities=13% Similarity=0.056 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCH
Q 019656 188 TPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEI 267 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (337)
+++..|+.|...++.+ ..+...+..++..+......-+.+|..+||||||+|..... ++.....+....+++.
T Consensus 4 ~a~~~I~~~~~~L~L~---~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~----~~~t~~eIa~~~~is~ 76 (98)
T d1aisb1 4 FALSELDRITAQLKLP---RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK----VPRTLDEIADIARVDK 76 (98)
T ss_dssp HHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT----CCCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCcC---HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHCCCH
Confidence 4677889999988773 55666777777666656666678899999999999974332 2222344555678999
Q ss_pred hHHHHHHHHHHHhHh
Q 019656 268 EHIYSCYSLMQGIEM 282 (337)
Q Consensus 268 ~~l~~C~~~i~~l~~ 282 (337)
.+|..+++.|.+.+.
T Consensus 77 ~ti~k~yk~i~~~L~ 91 (98)
T d1aisb1 77 KEIGRSYRFIARNLN 91 (98)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988654
No 21
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.58 E-value=0.0054 Score=44.71 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCH
Q 019656 188 TPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEI 267 (337)
Q Consensus 188 Tp~~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (337)
+++..+..|...++.+ ..+...+..++..+......-+-.|..|||||||+|..... ++.....+....+++.
T Consensus 4 ~a~~~I~~~~~~L~L~---~~i~~~A~~i~~~~~~~~~~~Gr~~~~i~AA~iY~acr~~~----~p~t~~eIa~~~~i~~ 76 (95)
T d1vola1 4 NAFKEITTMADRINLP---RNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG----VPRTFKEICAVSRISK 76 (95)
T ss_dssp HHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHTT----CCCCHHHHHTTTCSCH
T ss_pred HHHHHHHHHHHHcCcC---HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHcC----CCCCHHHHHHHhCCCH
Confidence 4677888888888763 45566666666555555555668899999999999975432 2223345566789999
Q ss_pred hHHHHHHHHHHHhHh
Q 019656 268 EHIYSCYSLMQGIEM 282 (337)
Q Consensus 268 ~~l~~C~~~i~~l~~ 282 (337)
.+|..+++.|.+.+.
T Consensus 77 ~~i~k~~k~i~~~L~ 91 (95)
T d1vola1 77 KEIGRCFKLILKALE 91 (95)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999988653
No 22
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.52 E-value=0.011 Score=44.58 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=61.7
Q ss_pred HHHHhHHHhCCChHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHhhhhccCCCCccc----eeeccCCCCHH
Q 019656 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLS-KRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSE----FQVDDFDFENK 167 (337)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~~DRfls-~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~d----l~i~~~~~~~~ 167 (337)
+|++....++.+++....|-+|+-=.+- ..-.-+..+ +.||++|++||+|+....+|.-.+ +.+-+...+.+
T Consensus 6 ~ll~~~k~l~~~~~l~q~AW~~lnDs~r~T~lcL~~~P---~~IA~a~I~LA~~~~~~~~p~~~~~~~Ww~~fd~~vt~e 82 (113)
T d2ivxa2 6 DVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKP---TVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLE 82 (113)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCH---HHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhccCCeeeecCc---HHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHccCCCHH
Confidence 4566667778899999999999877663 433344566 999999999999998876664332 12223346788
Q ss_pred HHHHHHHHHHHHc
Q 019656 168 VIQRMELLVLSTL 180 (337)
Q Consensus 168 ~I~~mE~~IL~~L 180 (337)
+|.++...||...
T Consensus 83 ~i~~i~~~il~lY 95 (113)
T d2ivxa2 83 LLDELTHEFLQIL 95 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8988888887764
No 23
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.02 E-value=0.056 Score=40.18 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhccCCCCccce-------eeccCCCCHHHHHHHHHHHHH
Q 019656 106 RTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEF-------QVDDFDFENKVIQRMELLVLS 178 (337)
Q Consensus 106 ~T~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl-------~i~~~~~~~~~I~~mE~~IL~ 178 (337)
+..-.|-+++-=.+...-.-...+ +.||++|++||+|.-+..+|..... ..-....+.++|.++-..||+
T Consensus 23 ~l~q~AW~~lNDs~rT~lcL~~~P---~~IA~a~I~lA~~~~~~~ip~~~~~~~~~~W~~~f~~dvt~e~i~~i~~~il~ 99 (110)
T d2i53a2 23 KLVQMAWTFVNDSLCTTLSLQWEP---EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILD 99 (110)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTSCH---HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCchhccCc---HHHHHHHHHHHHHHhCCCCCCcccCcccccHHHHHHccCCHHHHHHHHHHHHH
Confidence 456677777766554444445566 9999999999999987766654332 111224678889888888876
Q ss_pred Hc
Q 019656 179 TL 180 (337)
Q Consensus 179 ~L 180 (337)
.-
T Consensus 100 lY 101 (110)
T d2i53a2 100 LY 101 (110)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 24
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.90 E-value=1.9 Score=32.65 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCC
Q 019656 191 AFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQ 246 (337)
Q Consensus 191 ~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~ 246 (337)
+|+......++.. ......+..++...+....+..+.|-.||+||+++|.+..
T Consensus 42 ~~i~~~~~~l~l~---~~t~~~A~~~~dRf~~~~~~~~~~~~lva~acl~LA~K~e 94 (144)
T d2i53a1 42 RFIFDVGTRLGLH---YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 94 (144)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhh
Confidence 5555555555442 5566677778888888888899999999999999998643
No 25
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=80.64 E-value=3.6 Score=27.85 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=44.9
Q ss_pred HHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCchhhhhhhcccccCCCCCHhHHHHHHHHHHH
Q 019656 216 LIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRETIELKMNVFPSCGSPEIEHIYSCYSLMQG 279 (337)
Q Consensus 216 ~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~ 279 (337)
-+...++|..-.--+|-.|..||+-+.++... ...+....++.....++++++..|+.++.-
T Consensus 31 kifcalcdgrsamkrpvlitlacmhltmnqky--dyyenridgvckslyitkeelhqccdlvdi 92 (106)
T d1f5qb2 31 KIFCALCDGRSAMKRPVLITLACMHLTMNQKY--DYYENRIDGVCKSLYITKEELHQCCDLVDI 92 (106)
T ss_dssp HHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hheeeecCChhhhcCchhhhHHHHHHHHhcch--hHHHhhhhhhhhhheecHHHHHhhhhhhhe
Confidence 34445778888888999999999999986543 233333444444467999999999988754
No 26
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.18 E-value=2.9 Score=31.37 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCC
Q 019656 191 AFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQ 246 (337)
Q Consensus 191 ~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~ 246 (337)
.|+......++. ....+..+..++.....-..+..+.|-.||+||+++|.+..
T Consensus 36 ~~i~~~~~~l~l---~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl~LA~K~e 88 (143)
T d2ivxa1 36 NLIQEMGQRLNV---SQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 (143)
T ss_dssp HHHHHHHHHTTC---CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHhc
Confidence 455555555544 25566777778888877788889999999999999997643
No 27
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.18 E-value=4.1 Score=30.95 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCC
Q 019656 207 KELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQ 246 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~ 246 (337)
...+..+..++...+....+..+.|-.||+||+++|.+..
T Consensus 67 ~~~~~tA~~~~~RF~~~~s~~~~~~~li~~acl~LA~K~e 106 (151)
T d1jkwa1 67 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 106 (151)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHc
Confidence 5566677778888888888999999999999999998643
No 28
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=67.92 E-value=6.5 Score=28.79 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCc-hhhhhhhcccccCCCCCHhHHHHHHHHHHHh
Q 019656 207 KELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTR-ETIELKMNVFPSCGSPEIEHIYSCYSLMQGI 280 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l 280 (337)
.+.+..++.+++.++.......-....+|++|+++|.+..... ..+.. +..+.. ..++.+++.+.=..|.+.
T Consensus 49 ~~t~~lAv~llDr~l~~~~i~~~~~qLi~~~cl~iAsK~ee~~~~~l~~-l~~~~~-~~~t~~~i~~mE~~IL~~ 121 (128)
T d2cchb1 49 NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAE-FVYITD-DTYTKKQVLRMEHLVLKV 121 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHH-HHHHTT-SSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHhccCCCHHH-HHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 5566667777777766555555556789999999998542211 11211 112222 247888888776666554
No 29
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=60.16 E-value=17 Score=26.51 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCch-hhhhhhcccccCCCCCHhH
Q 019656 191 AFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTRE-TIELKMNVFPSCGSPEIEH 269 (337)
Q Consensus 191 ~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 269 (337)
+|+-.....++.. .+.+..++.+++.++.....-.-.--.+|+||+++|.+...... .... +..+.. ..++.++
T Consensus 36 dWl~~v~~~~~l~---~eTl~lAv~llDryl~~~~i~~~~lqLi~~tcL~IAsK~ee~~~~~l~~-l~~~~~-~~~t~~e 110 (127)
T d1bu2a1 36 TWMHLLCESFELD---KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSK-LTYLSC-DCFTNLE 110 (127)
T ss_dssp HHHHHHHHHTTCC---TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHSSSSCCCHHH-HHHTTT-TSSCHHH
T ss_pred HHHHHHHHHHCCC---hHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHc-CCCCHHH
Confidence 3444444444433 33456667777777766666556677899999999986432211 1111 111221 2478888
Q ss_pred HHHHHHHHHHh
Q 019656 270 IYSCYSLMQGI 280 (337)
Q Consensus 270 l~~C~~~i~~l 280 (337)
+.+.=..|.+.
T Consensus 111 i~~mE~~IL~~ 121 (127)
T d1bu2a1 111 LINQEKDILEA 121 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776666543
No 30
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=54.81 E-value=13 Score=27.60 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCCc-hhhhhhhcccccCCCCCHhH
Q 019656 191 AFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLTR-ETIELKMNVFPSCGSPEIEH 269 (337)
Q Consensus 191 ~fl~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 269 (337)
+|+-.....++.. .+.+..++.+++..+..........-.+|++|+++|.+..... ..+.. +..+.. ..++.++
T Consensus 49 dWm~~v~~~~~l~---~etl~lAv~llDrfls~~~i~~~~lqL~a~tcL~IAsK~ee~~~~~~~~-l~~~~~-~~yt~~e 123 (141)
T d1f5qb1 49 TWMFCVCKDLRQD---NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQ-LAYLCG-GATTADK 123 (141)
T ss_dssp HHHHHHHHHTTCC---TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHH-HHHHHC-TTCCHHH
T ss_pred HHHHHHHHHHCCC---hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH-HHHHhc-CCCCHHH
Confidence 3444444444433 3456667777777776666666677899999999998542211 11111 111111 3478888
Q ss_pred HHHHHHHHHHh
Q 019656 270 IYSCYSLMQGI 280 (337)
Q Consensus 270 l~~C~~~i~~l 280 (337)
+...=..|.+.
T Consensus 124 i~~mE~~IL~~ 134 (141)
T d1f5qb1 124 LLTLEVKSLDT 134 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776666543
No 31
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.24 E-value=43 Score=24.37 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhh-ccCCcHHHHHHHHHHHHHcCCC-CchhhhhhhcccccCCCCCHhHHHHHHHHHHHh
Q 019656 207 KELVSRAVELIMTITKVIN-LMNHRPSAIAAAAVLAASDGQL-TRETIELKMNVFPSCGSPEIEHIYSCYSLMQGI 280 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~-~l~~~PS~IAaAal~lA~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l 280 (337)
.+.+..+..+++.++.... ...-.--.+|+||+++|.+... ....+... ..+.. ..++.+++.+.=..|.+.
T Consensus 61 ~et~~lAv~llDryl~~~~~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l-~~~~~-~~~t~~ei~~mE~~IL~~ 134 (140)
T d1w98b2 61 RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQF-AYVTD-GACSGDEILTMELMIMKA 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHH-HHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccccHHHHhHHHHHHHHHHHHHcccCCCCHHHH-HHHHc-CCCCHHHHHHHHHHHHHH
Confidence 5667777777776654333 2223346899999999986421 11112211 11221 347888888776666553
No 32
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=43.77 E-value=27 Score=25.36 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHcCCCC-chhhhhhhcccccCCCCCHhHHHHHHHHHHHh
Q 019656 207 KELVSRAVELIMTITKVINLMNHRPSAIAAAAVLAASDGQLT-RETIELKMNVFPSCGSPEIEHIYSCYSLMQGI 280 (337)
Q Consensus 207 ~~~~~~~~~~l~~~l~~~~~l~~~PS~IAaAal~lA~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~C~~~i~~l 280 (337)
.+.+..+..+++.++....+-.-.=..+|++|+++|.+.... ...+.. +..+.. ..++.+++...=..|.+.
T Consensus 54 ~et~~lAv~llDrfls~~~v~~~~lqLia~tcl~iAsK~ee~~~~~~~~-l~~~~~-~~~t~~ei~~mE~~IL~~ 126 (132)
T d1g3nc1 54 PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSS-LCYAAA-DSFSRQELIDQEKELLEK 126 (132)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHH-HHHHTT-TCSCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHhcccCCCCHHH-HHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 455666677777666544433333457899999999763211 111111 111222 357888887766655543
No 33
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=43.40 E-value=33 Score=24.64 Aligned_cols=74 Identities=9% Similarity=-0.069 Sum_probs=49.3
Q ss_pred HhCCChHHHHHHHHHHHhhhccc-ccccchhhHHHHHHHHHHHHHhhhhccCCCCcccee-eccCCCCHHHHHHHHHHHH
Q 019656 100 MFGFQFRTAYLSVDFLDRFLSKR-SIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVL 177 (337)
Q Consensus 100 ~~~l~~~T~~lAv~~~DRfls~~-~v~~~~~w~lqLla~acL~LAaK~EE~~~p~l~dl~-i~~~~~~~~~I~~mE~~IL 177 (337)
.-+.+.++.++|-.+++--+... .+-+..+ -.+|++|++||-++-...+ -...+. .++ |+.+++..+-..+.
T Consensus 14 ~~~~d~~~~~la~Yl~ElsLl~~~~~l~~~P---S~lAaaai~lar~~l~~~~-W~~~L~~~t~--y~~~~l~~c~~~L~ 87 (124)
T d2cchb2 14 QQPANCKVESLAMFLGELSLIDADPYLKYLP---SVIAGAAFHLALYTVTGQS-WPESLIRKTG--YTLESLKPCLMDLH 87 (124)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHCHHHHTTSCH---HHHHHHHHHHHHHHHHSCC-SCHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHhHHHHHccCh---HHHHHHHHHHHHHHhCCCC-chHHHHHHhC--CCHHHHHHHHHHHH
Confidence 33456677788888888777553 3445566 8899999999999855432 233444 453 67888877666654
Q ss_pred HH
Q 019656 178 ST 179 (337)
Q Consensus 178 ~~ 179 (337)
+.
T Consensus 88 ~~ 89 (124)
T d2cchb2 88 QT 89 (124)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.91 E-value=41 Score=24.31 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHhhhhcc
Q 019656 108 AYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEEC 149 (337)
Q Consensus 108 ~~lAv~~~DRfls~~~v~~~~~w~lqLla~acL~LAaK~EE~ 149 (337)
...|-++++.-+...-.-...+ .-||+|||++|++.-..
T Consensus 27 ~~~a~~~lnds~~Td~~l~y~P---~qIalaal~~a~~~~~~ 65 (126)
T d1jkwa2 27 RKTADDFLNRIALTDAYLLYTP---SQIALTAILSSASRAGI 65 (126)
T ss_dssp HHHHHHHHHHHTTSTHHHHSCH---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCeeeeeCH---HHHHHHHHHHHHHHcCC
Confidence 3445566665554433333455 88999999999998654
Done!