Query 019657
Match_columns 337
No_of_seqs 72 out of 74
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14802 TMEM192: TMEM192 fami 100.0 5E-60 1.1E-64 438.5 21.9 196 38-233 23-236 (236)
2 COG2433 Uncharacterized conser 88.0 4.9 0.00011 43.5 10.9 87 207-324 423-509 (652)
3 PF15619 Lebercilin: Ciliary p 87.2 14 0.0003 34.3 12.3 69 232-306 45-113 (194)
4 KOG4552 Vitamin-D-receptor int 86.9 5.5 0.00012 38.4 9.6 85 218-304 16-103 (272)
5 PF14802 TMEM192: TMEM192 fami 85.2 9.5 0.00021 36.5 10.4 33 207-239 203-235 (236)
6 PRK09039 hypothetical protein; 85.1 9.5 0.00021 37.9 10.7 61 266-326 114-181 (343)
7 PF00038 Filament: Intermediat 84.6 15 0.00033 34.8 11.5 102 215-324 20-131 (312)
8 PRK09039 hypothetical protein; 83.4 16 0.00035 36.4 11.5 7 301-307 181-187 (343)
9 TIGR01010 BexC_CtrB_KpsE polys 83.2 8.8 0.00019 37.4 9.5 89 213-305 170-258 (362)
10 PRK10884 SH3 domain-containing 82.7 6.4 0.00014 36.8 8.0 69 255-323 94-166 (206)
11 KOG0288 WD40 repeat protein Ti 79.9 4.1 8.8E-05 42.4 6.0 52 250-301 16-67 (459)
12 PF14362 DUF4407: Domain of un 77.1 70 0.0015 30.6 16.0 59 37-101 15-75 (301)
13 PF07106 TBPIP: Tat binding pr 76.9 13 0.00028 32.8 7.7 67 260-326 71-139 (169)
14 TIGR01843 type_I_hlyD type I s 76.5 58 0.0013 31.4 12.6 47 243-293 189-235 (423)
15 TIGR03752 conj_TIGR03752 integ 74.7 12 0.00026 39.4 7.8 56 243-309 52-111 (472)
16 PRK09841 cryptic autophosphory 74.4 31 0.00068 37.3 11.1 37 214-250 268-304 (726)
17 KOG0999 Microtubule-associated 73.9 37 0.00081 37.0 11.2 107 226-335 63-202 (772)
18 PF09726 Macoilin: Transmembra 73.8 21 0.00046 39.0 9.7 27 301-327 493-519 (697)
19 PF09755 DUF2046: Uncharacteri 73.8 73 0.0016 32.1 12.6 90 215-323 98-200 (310)
20 PF09730 BicD: Microtubule-ass 70.8 7.2 0.00016 42.9 5.4 82 244-331 13-125 (717)
21 PRK11519 tyrosine kinase; Prov 70.3 49 0.0011 35.8 11.4 33 212-244 266-298 (719)
22 PF08826 DMPK_coil: DMPK coile 68.2 23 0.0005 27.6 6.3 51 272-326 5-55 (61)
23 KOG0977 Nuclear envelope prote 68.2 45 0.00098 35.9 10.4 58 267-324 147-211 (546)
24 PF07111 HCR: Alpha helical co 67.8 51 0.0011 36.6 10.8 67 260-326 477-551 (739)
25 PRK11637 AmiB activator; Provi 67.1 87 0.0019 31.6 11.8 83 207-302 164-246 (428)
26 PF14197 Cep57_CLD_2: Centroso 65.6 43 0.00093 26.4 7.4 62 265-326 2-63 (69)
27 PF12325 TMF_TATA_bd: TATA ele 65.0 25 0.00054 30.5 6.5 80 217-296 20-103 (120)
28 TIGR02808 short_TIGR02808 cons 63.9 4.4 9.6E-05 29.6 1.5 23 46-68 19-41 (42)
29 TIGR01843 type_I_hlyD type I s 63.0 86 0.0019 30.3 10.6 30 264-293 154-183 (423)
30 PF12711 Kinesin-relat_1: Kine 63.0 58 0.0013 27.1 8.0 58 217-295 21-80 (86)
31 PF11368 DUF3169: Protein of u 62.7 1.4E+02 0.003 28.1 12.4 48 84-131 64-115 (248)
32 TIGR03007 pepcterm_ChnLen poly 61.1 1.1E+02 0.0024 31.0 11.4 33 212-244 160-192 (498)
33 PF10498 IFT57: Intra-flagella 60.3 1.1E+02 0.0024 31.0 11.1 64 261-324 273-342 (359)
34 PF15035 Rootletin: Ciliary ro 59.9 1E+02 0.0022 28.4 9.9 27 210-236 13-39 (182)
35 PF11559 ADIP: Afadin- and alp 58.7 72 0.0016 27.5 8.4 60 263-322 61-120 (151)
36 PF09574 DUF2374: Protein of 58.3 7 0.00015 28.6 1.7 22 46-67 19-40 (42)
37 KOG1029 Endocytic adaptor prot 57.3 1.1E+02 0.0024 34.9 11.1 26 213-238 430-455 (1118)
38 PF05961 Chordopox_A13L: Chord 57.2 17 0.00037 29.2 3.8 48 151-204 5-52 (68)
39 PF10186 Atg14: UV radiation r 56.3 74 0.0016 29.4 8.5 42 265-306 67-108 (302)
40 PF04111 APG6: Autophagy prote 55.8 53 0.0012 32.4 7.9 45 261-305 64-108 (314)
41 KOG0993 Rab5 GTPase effector R 55.6 98 0.0021 32.8 9.9 88 207-300 289-388 (542)
42 KOG3088 Secretory carrier memb 55.6 16 0.00035 36.6 4.2 37 257-293 56-92 (313)
43 PF14817 HAUS5: HAUS augmin-li 55.5 82 0.0018 34.4 9.8 76 208-292 32-110 (632)
44 PF15619 Lebercilin: Ciliary p 55.3 1.4E+02 0.0031 27.7 10.1 57 268-324 118-178 (194)
45 PF08614 ATG16: Autophagy prot 54.7 58 0.0013 29.5 7.4 43 255-297 110-152 (194)
46 PF05701 WEMBL: Weak chloropla 53.3 1.4E+02 0.0031 31.4 10.9 53 265-317 278-330 (522)
47 PF09726 Macoilin: Transmembra 53.0 47 0.001 36.5 7.6 38 289-326 460-504 (697)
48 PF12761 End3: Actin cytoskele 53.0 96 0.0021 29.3 8.7 78 217-295 100-194 (195)
49 TIGR03495 phage_LysB phage lys 52.9 1.5E+02 0.0032 26.5 9.4 32 271-302 64-95 (135)
50 TIGR01005 eps_transp_fam exopo 52.7 1.9E+02 0.004 31.3 11.9 32 214-245 195-226 (754)
51 PRK11637 AmiB activator; Provi 51.6 2.2E+02 0.0048 28.8 11.6 16 284-299 214-229 (428)
52 PF00038 Filament: Intermediat 51.6 43 0.00093 31.8 6.3 42 265-306 206-247 (312)
53 COG4942 Membrane-bound metallo 51.5 3E+02 0.0066 28.9 12.7 63 262-324 172-238 (420)
54 PF08614 ATG16: Autophagy prot 50.2 36 0.00078 30.9 5.3 60 265-324 99-158 (194)
55 TIGR03017 EpsF chain length de 49.6 1.8E+02 0.0039 28.9 10.5 34 213-246 171-204 (444)
56 PF04156 IncA: IncA protein; 49.1 1.9E+02 0.0041 25.6 9.7 12 225-236 100-111 (191)
57 PRK10884 SH3 domain-containing 49.1 92 0.002 29.2 7.9 82 207-290 80-161 (206)
58 KOG4403 Cell surface glycoprot 48.9 1.7E+02 0.0036 31.4 10.4 72 216-287 238-328 (575)
59 COG4942 Membrane-bound metallo 48.7 77 0.0017 33.2 8.0 67 256-322 33-99 (420)
60 PF10805 DUF2730: Protein of u 48.6 81 0.0018 26.4 6.8 54 252-308 47-102 (106)
61 PF14662 CCDC155: Coiled-coil 47.9 2.4E+02 0.0052 26.8 10.4 96 218-326 93-188 (193)
62 KOG0250 DNA repair protein RAD 47.9 2.9E+02 0.0063 32.3 12.8 107 167-275 608-724 (1074)
63 PLN03188 kinesin-12 family pro 47.8 55 0.0012 38.5 7.4 92 221-326 1115-1241(1320)
64 PF04156 IncA: IncA protein; 46.8 2.1E+02 0.0045 25.3 16.2 16 223-238 91-106 (191)
65 PF10186 Atg14: UV radiation r 46.4 1.4E+02 0.003 27.6 8.7 85 207-297 22-106 (302)
66 PF07888 CALCOCO1: Calcium bin 46.1 1.7E+02 0.0037 31.6 10.2 26 301-326 383-408 (546)
67 PF11932 DUF3450: Protein of u 45.2 1.4E+02 0.003 28.0 8.6 59 265-323 39-97 (251)
68 TIGR01005 eps_transp_fam exopo 44.7 2.4E+02 0.0051 30.5 11.2 24 301-324 381-404 (754)
69 PHA03049 IMV membrane protein; 44.6 31 0.00067 27.7 3.5 47 152-204 6-52 (68)
70 COG1579 Zn-ribbon protein, pos 44.0 3E+02 0.0066 26.7 10.7 38 257-294 85-122 (239)
71 PF00669 Flagellin_N: Bacteria 43.8 1.9E+02 0.0041 24.0 9.5 79 218-296 10-90 (139)
72 PRK15396 murein lipoprotein; P 43.4 64 0.0014 26.3 5.2 32 262-293 33-64 (78)
73 KOG4673 Transcription factor T 43.4 2.2E+02 0.0048 32.2 10.7 83 211-300 472-562 (961)
74 PF06638 Strabismus: Strabismu 43.0 50 0.0011 35.2 5.7 26 195-220 239-267 (505)
75 KOG0977 Nuclear envelope prote 42.8 3.3E+02 0.0072 29.6 11.7 112 215-326 58-192 (546)
76 TIGR02559 HrpB7 type III secre 42.2 1.6E+02 0.0035 27.1 8.1 56 254-309 86-141 (158)
77 PRK15178 Vi polysaccharide exp 41.9 1.3E+02 0.0029 31.5 8.5 43 211-253 240-282 (434)
78 PF06818 Fez1: Fez1; InterPro 41.3 83 0.0018 29.9 6.4 33 267-299 9-41 (202)
79 PF04977 DivIC: Septum formati 40.9 86 0.0019 23.5 5.4 32 264-295 20-51 (80)
80 PF04849 HAP1_N: HAP1 N-termin 40.7 2.6E+02 0.0056 28.2 10.0 110 208-324 162-283 (306)
81 TIGR03017 EpsF chain length de 40.4 3.9E+02 0.0083 26.6 11.4 27 224-250 258-284 (444)
82 PF12325 TMF_TATA_bd: TATA ele 40.3 1.7E+02 0.0037 25.4 7.7 20 245-264 10-33 (120)
83 KOG1962 B-cell receptor-associ 40.0 3.5E+02 0.0076 26.0 17.9 72 151-241 47-128 (216)
84 PF15254 CCDC14: Coiled-coil d 39.3 1.4E+02 0.003 33.8 8.5 79 215-293 389-487 (861)
85 PF04859 DUF641: Plant protein 39.2 1.6E+02 0.0034 26.2 7.4 59 228-296 53-115 (131)
86 PF08317 Spc7: Spc7 kinetochor 39.1 3.9E+02 0.0084 26.3 12.6 88 217-309 181-271 (325)
87 PF03268 DUF267: Caenorhabditi 38.7 2.4E+02 0.0052 29.0 9.5 187 27-227 11-230 (353)
88 KOG4643 Uncharacterized coiled 38.0 3.7E+02 0.008 31.6 11.6 87 214-300 126-223 (1195)
89 PF08618 Opi1: Transcription f 37.6 75 0.0016 33.2 5.9 30 213-242 235-264 (427)
90 PF05392 COX7B: Cytochrome C o 37.5 28 0.00061 28.7 2.3 33 39-71 42-74 (80)
91 COG3851 UhpB Signal transducti 37.5 71 0.0015 33.6 5.7 69 61-131 69-140 (497)
92 PRK06342 transcription elongat 37.0 50 0.0011 29.8 4.1 27 262-288 35-61 (160)
93 TIGR03007 pepcterm_ChnLen poly 36.6 3.6E+02 0.0077 27.4 10.5 21 301-321 360-380 (498)
94 PF05266 DUF724: Protein of un 36.6 1.2E+02 0.0025 28.2 6.5 56 255-310 125-180 (190)
95 PF06008 Laminin_I: Laminin Do 36.5 3.7E+02 0.008 25.3 11.9 80 220-300 94-178 (264)
96 PHA02562 46 endonuclease subun 36.4 4.9E+02 0.011 26.6 12.0 70 216-291 258-329 (562)
97 PHA02702 ORF033 IMV membrane p 36.4 1.1E+02 0.0023 25.3 5.5 29 148-176 43-75 (78)
98 KOG2264 Exostosin EXT1L [Signa 36.2 3.6E+02 0.0077 30.1 10.7 51 259-312 101-151 (907)
99 smart00787 Spc7 Spc7 kinetocho 35.7 4.4E+02 0.0096 26.2 10.8 56 254-309 211-266 (312)
100 PF06818 Fez1: Fez1; InterPro 34.7 1.3E+02 0.0029 28.5 6.6 70 228-297 32-102 (202)
101 PF04094 DUF390: Protein of un 33.8 1.6E+02 0.0034 33.3 7.8 75 253-327 536-634 (828)
102 COG2433 Uncharacterized conser 33.7 2.9E+02 0.0062 30.6 9.6 85 205-299 428-512 (652)
103 PF05130 FlgN: FlgN protein; 33.6 2.1E+02 0.0046 23.0 7.0 33 273-305 82-115 (143)
104 PF07099 DUF1361: Protein of u 33.4 93 0.002 28.0 5.2 32 152-183 108-141 (168)
105 PF02990 EMP70: Endomembrane p 33.2 4.1E+02 0.0088 27.9 10.5 91 69-169 293-392 (521)
106 KOG0250 DNA repair protein RAD 33.1 6.7E+02 0.015 29.5 12.7 82 208-291 283-374 (1074)
107 PF09738 DUF2051: Double stran 32.2 3.1E+02 0.0068 27.4 9.0 83 207-290 135-248 (302)
108 TIGR03495 phage_LysB phage lys 32.0 2.6E+02 0.0056 25.0 7.6 35 261-295 19-53 (135)
109 PF09971 DUF2206: Predicted me 32.0 4.4E+02 0.0095 26.8 10.2 69 79-165 124-193 (367)
110 KOG3402 Predicted membrane pro 31.8 30 0.00066 29.4 1.7 32 24-55 40-77 (101)
111 PF02932 Neur_chan_memb: Neuro 31.2 1.8E+02 0.004 23.5 6.2 18 122-139 27-44 (237)
112 PF07856 Orai-1: Mediator of C 31.2 1.8E+02 0.0038 26.8 6.7 22 154-175 144-165 (175)
113 PF11833 DUF3353: Protein of u 31.1 84 0.0018 29.2 4.7 55 32-86 132-192 (194)
114 PF14966 DNA_repr_REX1B: DNA r 31.1 2.2E+02 0.0048 23.7 6.7 69 225-293 4-81 (97)
115 PF06703 SPC25: Microsomal sig 31.0 60 0.0013 28.5 3.5 77 22-103 11-88 (162)
116 KOG0249 LAR-interacting protei 30.7 3.7E+02 0.0081 30.6 10.0 126 208-335 100-269 (916)
117 PRK10361 DNA recombination pro 29.6 2.3E+02 0.005 30.1 8.0 9 228-236 44-52 (475)
118 PF07782 DC_STAMP: DC-STAMP-li 29.6 4.2E+02 0.0092 23.9 10.0 31 143-173 143-173 (191)
119 PLN03188 kinesin-12 family pro 29.3 2.7E+02 0.0059 33.2 9.1 83 207-296 885-1000(1320)
120 PRK13411 molecular chaperone D 29.0 1.8E+02 0.004 31.3 7.4 68 257-324 518-590 (653)
121 PF05667 DUF812: Protein of un 28.9 1.9E+02 0.0041 31.4 7.4 56 265-320 325-380 (594)
122 PF11241 DUF3043: Protein of u 28.8 2.6E+02 0.0055 26.0 7.3 68 36-112 73-154 (170)
123 PF07106 TBPIP: Tat binding pr 28.3 2.1E+02 0.0046 25.2 6.5 54 256-309 81-136 (169)
124 PF08397 IMD: IRSp53/MIM homol 28.3 1.2E+02 0.0026 28.0 5.2 35 207-241 63-98 (219)
125 PF08317 Spc7: Spc7 kinetochor 28.2 2.3E+02 0.0049 27.9 7.3 48 276-323 217-264 (325)
126 PRK10476 multidrug resistance 28.2 5.6E+02 0.012 24.8 10.6 48 243-294 145-192 (346)
127 PHA02246 hypothetical protein 28.2 54 0.0012 30.6 2.8 82 106-188 51-146 (192)
128 PF01763 Herpes_UL6: Herpesvir 28.1 73 0.0016 34.4 4.2 39 208-246 372-410 (557)
129 PF14584 DUF4446: Protein of u 28.1 1.3E+02 0.0027 27.1 5.1 52 231-283 24-75 (151)
130 PF09789 DUF2353: Uncharacteri 28.0 2.3E+02 0.0051 28.6 7.4 117 164-301 164-305 (319)
131 TIGR03185 DNA_S_dndD DNA sulfu 28.0 3.6E+02 0.0077 28.9 9.3 65 231-295 186-250 (650)
132 PF09486 HrpB7: Bacterial type 27.5 4.8E+02 0.01 23.8 9.5 48 262-309 87-141 (158)
133 PF10654 DUF2481: Protein of u 27.2 60 0.0013 28.7 2.8 34 208-242 9-42 (126)
134 PF10251 PEN-2: Presenilin enh 27.1 41 0.00089 28.4 1.7 21 36-56 53-73 (94)
135 PF09787 Golgin_A5: Golgin sub 27.1 1.9E+02 0.0041 30.3 6.9 81 217-297 285-377 (511)
136 PF13870 DUF4201: Domain of un 26.9 4.5E+02 0.0097 23.3 12.5 53 211-263 4-65 (177)
137 smart00787 Spc7 Spc7 kinetocho 26.7 6.5E+02 0.014 25.1 11.6 64 263-326 191-262 (312)
138 PF14142 YrzO: YrzO-like prote 26.6 56 0.0012 24.2 2.1 16 207-222 27-42 (46)
139 PRK14127 cell division protein 26.6 1.3E+02 0.0028 25.9 4.7 74 250-324 26-99 (109)
140 PF09304 Cortex-I_coil: Cortex 26.1 4.4E+02 0.0095 22.9 8.5 53 266-321 35-90 (107)
141 PF09789 DUF2353: Uncharacteri 25.8 6.7E+02 0.014 25.5 10.1 85 213-301 72-177 (319)
142 TIGR02680 conserved hypothetic 25.5 5.9E+02 0.013 30.2 11.1 27 216-242 233-259 (1353)
143 PF08657 DASH_Spc34: DASH comp 25.3 2.2E+02 0.0048 27.7 6.6 65 210-274 178-259 (259)
144 PRK11281 hypothetical protein; 25.3 9.5E+02 0.021 28.3 12.4 67 224-290 91-164 (1113)
145 PRK10929 putative mechanosensi 25.3 8.8E+02 0.019 28.6 12.2 69 211-279 43-134 (1109)
146 KOG4324 Guanine nucleotide exc 25.1 2.3E+02 0.0049 30.2 6.9 111 206-323 93-235 (476)
147 PF14182 YgaB: YgaB-like prote 25.1 2.2E+02 0.0047 23.6 5.5 16 227-242 14-29 (79)
148 TIGR00540 hemY_coli hemY prote 25.0 4E+02 0.0087 26.3 8.5 44 49-92 8-62 (409)
149 PRK09973 putative outer membra 24.7 4E+02 0.0087 22.2 7.0 46 262-319 32-77 (85)
150 PF05667 DUF812: Protein of un 24.7 3E+02 0.0065 29.9 8.0 46 255-300 322-367 (594)
151 PRK10803 tol-pal system protei 24.3 2.4E+02 0.0053 27.0 6.6 48 253-300 46-93 (263)
152 COG4252 Predicted transmembran 24.2 1.4E+02 0.0031 30.9 5.3 44 39-88 352-395 (400)
153 COG3879 Uncharacterized protei 24.2 2.2E+02 0.0048 27.9 6.3 46 262-310 58-103 (247)
154 PF03245 Phage_lysis: Bacterio 24.2 3.4E+02 0.0074 23.4 6.9 55 267-321 6-60 (125)
155 PF12795 MscS_porin: Mechanose 23.9 5.2E+02 0.011 24.0 8.6 52 227-278 52-109 (240)
156 PF13815 Dzip-like_N: Iguana/D 23.6 1.8E+02 0.0038 24.6 5.0 24 213-236 66-89 (118)
157 PF04849 HAP1_N: HAP1 N-termin 23.3 7.9E+02 0.017 24.9 10.1 33 265-297 273-305 (306)
158 PF12896 Apc4: Anaphase-promot 23.2 1.5E+02 0.0033 26.5 4.8 49 211-259 29-85 (210)
159 PF06548 Kinesin-related: Kine 23.1 3E+02 0.0065 29.5 7.4 93 220-326 344-471 (488)
160 COG5102 SFT2 Membrane protein 22.9 6.6E+02 0.014 23.9 9.5 37 101-137 117-153 (201)
161 PF12128 DUF3584: Protein of u 22.9 1.3E+03 0.027 27.1 13.1 65 263-327 471-535 (1201)
162 TIGR01730 RND_mfp RND family e 22.9 3.2E+02 0.0069 25.3 6.9 22 262-283 72-93 (322)
163 PF14931 IFT20: Intraflagellar 22.6 4.2E+02 0.0092 23.0 7.1 81 218-301 18-106 (120)
164 PRK04863 mukB cell division pr 22.6 6.8E+02 0.015 30.4 10.9 35 207-242 302-336 (1486)
165 PF06210 DUF1003: Protein of u 22.5 3.9E+02 0.0085 22.8 6.8 62 41-102 2-69 (108)
166 PF11932 DUF3450: Protein of u 22.5 6.4E+02 0.014 23.6 8.9 36 265-300 102-142 (251)
167 PRK10747 putative protoheme IX 22.3 4.8E+02 0.01 25.8 8.4 16 49-64 8-23 (398)
168 PF15070 GOLGA2L5: Putative go 22.0 4.2E+02 0.009 29.0 8.4 51 250-300 184-234 (617)
169 PF10856 DUF2678: Protein of u 22.0 1.1E+02 0.0024 27.0 3.5 30 28-57 17-51 (118)
170 TIGR02350 prok_dnaK chaperone 21.4 3.2E+02 0.007 28.7 7.4 67 257-325 514-585 (595)
171 COG5346 Predicted membrane pro 21.4 2.1E+02 0.0046 25.7 5.1 60 159-235 23-82 (136)
172 PF06785 UPF0242: Uncharacteri 21.4 3.7E+02 0.0079 28.0 7.4 41 253-293 91-131 (401)
173 PF03980 Nnf1: Nnf1 ; InterPr 21.3 1.6E+02 0.0034 24.2 4.1 34 247-280 65-99 (109)
174 PF11003 DUF2842: Protein of u 21.2 2.4E+02 0.0053 21.9 4.9 26 37-62 1-27 (62)
175 PHA02562 46 endonuclease subun 21.2 6.3E+02 0.014 25.8 9.3 23 217-239 303-325 (562)
176 TIGR00914 2A0601 heavy metal e 20.9 1.2E+03 0.027 26.6 12.2 60 118-178 980-1046(1051)
177 KOG0288 WD40 repeat protein Ti 20.7 8.7E+02 0.019 26.0 10.0 58 253-310 47-121 (459)
178 COG1033 Predicted exporters of 20.7 5.9E+02 0.013 28.6 9.4 90 83-177 258-361 (727)
179 PRK12438 hypothetical protein; 20.6 6E+02 0.013 29.6 9.6 60 68-133 210-273 (991)
180 KOG0612 Rho-associated, coiled 20.6 4.3E+02 0.0094 31.6 8.5 87 217-309 746-838 (1317)
181 PHA03055 Hypothetical protein; 20.5 2.3E+02 0.005 23.5 4.8 52 121-172 8-74 (79)
182 TIGR01010 BexC_CtrB_KpsE polys 20.5 8.1E+02 0.018 24.0 10.5 44 207-250 186-244 (362)
183 KOG1029 Endocytic adaptor prot 20.3 1.4E+03 0.03 26.7 12.6 40 286-325 557-610 (1118)
184 COG4792 EscU Type III secretor 20.3 6.2E+02 0.013 26.1 8.6 134 42-218 151-298 (349)
No 1
>PF14802 TMEM192: TMEM192 family
Probab=100.00 E-value=5e-60 Score=438.55 Aligned_cols=196 Identities=33% Similarity=0.471 Sum_probs=183.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccc
Q 019657 38 SIFGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIV 115 (337)
Q Consensus 38 ~~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~--~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lk 115 (337)
-+..+++.+++.++.++++++.||++-+..+ -..+++||+||+||++|+++|+|+|+||+|+|++||++|||+|+++|
T Consensus 23 Tv~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~r 102 (236)
T PF14802_consen 23 TVPIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLR 102 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677888888999999999999876665 34679999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHhhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q 019657 116 RLPFAITAYGTAAMLLVIVWRPHIS-----------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184 (337)
Q Consensus 116 RlPl~IvSlGna~LLLI~~~~~~~~-----------~Ls~~~ilriil~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~ 184 (337)
|+||+|||+||++||++++|.+++. +|++..++++++++|++|++||++.||+||+||||+||+|||++
T Consensus 103 r~Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~ 182 (236)
T PF14802_consen 103 RLPLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLR 182 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence 9999999999999999999999882 49999999999999999999999999999999999999999999
Q ss_pred cccC--CCCCCCCCCCccccCCCc---hhHhHHHHHHHHHHHhHHhhHHHHHHH
Q 019657 185 SLYS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ 233 (337)
Q Consensus 185 ee~s--~~~ps~s~~E~Gfrd~g~---LlEKQADLIrYLkdhNa~LSkrIL~Lq 233 (337)
++++ +.+|+++++|+||+++++ ++|||||||+||||||++||+|||+||
T Consensus 183 ~~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~ 236 (236)
T PF14802_consen 183 EEYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT 236 (236)
T ss_pred hhhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999 889999999999998887 999999999999999999999999985
No 2
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.96 E-value=4.9 Score=43.51 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=64.3
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (337)
-..+....+.-|+++|..|..++.+|+....+++.. ++++..|++ .=..
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~---------------------------l~~~~r~~~----~~~~ 471 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESE---------------------------LERFRREVR----DKVR 471 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHH----HHHh
Confidence 567788888999999999999999998666555433 333333333 1123
Q ss_pred hHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 287 REAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 287 r~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
++.||......++.||+.|+.++..--+|.+++..+|.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777888899999888888888888888884
No 3
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.23 E-value=14 Score=34.27 Aligned_cols=69 Identities=23% Similarity=0.458 Sum_probs=58.4
Q ss_pred HHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHH
Q 019657 232 LQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALE 306 (337)
Q Consensus 232 Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale 306 (337)
-...+++|+.+ +-|+.-+++.-..|+|++-..+...+...+.+-.-|-+.|.|+.+.+..+..|+...+
T Consensus 45 q~kAL~k~e~~------e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 45 QEKALQKYEDT------EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999987 4477788999999999999999999999999999999999999999888887554443
No 4
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=86.91 E-value=5.5 Score=38.44 Aligned_cols=85 Identities=18% Similarity=0.326 Sum_probs=60.4
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (337)
Q Consensus 218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (337)
.-|..-.++|+|...-....+-+-...| --||+-.||.+|+.|.+ .++-|-...+.+.+.-++....||++||++
T Consensus 16 ~~dDlE~i~kelie~l~~~~~qk~l~~g--E~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 16 SADDLEHIVKELIETLINRDKQKMLKNG--ETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHhcc--hHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455566777777655444333333334 45799999999999998 566777778889999999999999999998
Q ss_pred HhccHHHHHH
Q 019657 295 RNTNNQLERA 304 (337)
Q Consensus 295 r~~n~qle~a 304 (337)
-..=..-|.+
T Consensus 94 qk~LK~aE~i 103 (272)
T KOG4552|consen 94 QKNLKSAEVI 103 (272)
T ss_pred HHHHHHHHHH
Confidence 6543333333
No 5
>PF14802 TMEM192: TMEM192 family
Probab=85.22 E-value=9.5 Score=36.49 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.0
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY 239 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~ky 239 (337)
-.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus 203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445999999999999999999999999998765
No 6
>PRK09039 hypothetical protein; Validated
Probab=85.10 E-value=9.5 Score=37.93 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=43.5
Q ss_pred hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH-------HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ-------LERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q-------le~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
+.+...+++.+|...+.+..|-.+++++++.-=.. +|-+|++-.-..-|.+.+|.++....
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888888888888776644333 67777776666688888888886543
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.60 E-value=15 Score=34.78 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=59.1
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch-h--hh-Hhhhhhc------hhHHhhhHHHHHhHHHHHHHHHhhh
Q 019657 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ-V--DL-AHLLAAR------DQELRTLSAEMNQLQSELRLARSFV 284 (337)
Q Consensus 215 IrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpq-v--dl-~h~la~r------~qelRa~~Ae~~q~~~el~~ar~li 284 (337)
.++|.+.|..|..+|-.+.... |..+. + .. ..+=+.| -.|-..+-.+.+.++.|+...|.-+
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~--------~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~ 91 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKK--------GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcc--------cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 5788888888887777666553 11111 1 11 1222222 1222344444555555555555555
Q ss_pred HHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 285 AEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 285 ~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
.+-.+....+....+.+...++.+.+...+|+.++..+..
T Consensus 92 e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 92 EEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 5566666667777777888999999999999988887765
No 8
>PRK09039 hypothetical protein; Validated
Probab=83.43 E-value=16 Score=36.36 Aligned_cols=7 Identities=43% Similarity=0.373 Sum_probs=4.2
Q ss_pred HHHHHHH
Q 019657 301 LERALEV 307 (337)
Q Consensus 301 le~ale~ 307 (337)
|+.||..
T Consensus 181 L~~a~~~ 187 (343)
T PRK09039 181 LNVALAQ 187 (343)
T ss_pred HHHHHHH
Confidence 6666644
No 9
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.25 E-value=8.8 Score=37.43 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHH
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (337)
+-+.|+.+....+.+++-..+..+..|++......|+-... +=.+.+..+.+++.+++.|+...++-..+.-.+++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~----~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~ 245 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSS----AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence 55678888888888899999999999998855444443211 11112334455555555555555544444444444
Q ss_pred HHHhccHHHHHHH
Q 019657 293 RVRNTNNQLERAL 305 (337)
Q Consensus 293 ~~r~~n~qle~al 305 (337)
.++..=.++++.+
T Consensus 246 ~l~~~i~~l~~~i 258 (362)
T TIGR01010 246 SLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHH
Confidence 4443333333333
No 10
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.71 E-value=6.4 Score=36.82 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=35.9
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHh----hhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhh
Q 019657 255 LLAARDQELRTLSAEMNQLQSELRLARS----FVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRR 323 (337)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~----li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r 323 (337)
.+..=++|+-.+.+++++++++...-.+ .+++++..+..+...|.+|...|+.-+-.+-+|+.+...+.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444554555555555444332222 22334555555888888887777665555555544444443
No 11
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.88 E-value=4.1 Score=42.39 Aligned_cols=52 Identities=33% Similarity=0.433 Sum_probs=46.5
Q ss_pred hhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH
Q 019657 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql 301 (337)
.|+.|-||-=++---.++|++.-+..|-+.-++-+.+++.|++++.+.|.|+
T Consensus 16 ~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 16 IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888877777778999999999999999999999999999999999994
No 12
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.12 E-value=70 Score=30.57 Aligned_cols=59 Identities=15% Similarity=0.018 Sum_probs=33.4
Q ss_pred ccchhhH-HHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 019657 37 HSIFGSV-VYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLA-LTGIFQQYFVYQVQKIRL 101 (337)
Q Consensus 37 ~~~~g~~-~y~~lL~~~A~~~~~~~wi~~~~~~~~~~lL~~~~v~LWl-lt~l~d~yv~~qH~KlRl 101 (337)
-...|++ +...+++++++.++..... +. ++..+..=.++|. +.+.+|+++.-...|.+.
T Consensus 15 ~~~~G~~vl~ta~la~~s~~~a~~~~~-----~~-~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~ 75 (301)
T PF14362_consen 15 YAGIGAAVLFTALLAGLSGGYALYTVF-----GG-PVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDG 75 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cc-chHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3345555 4444555555555544333 11 1144444446775 567799999998777665
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.93 E-value=13 Score=32.76 Aligned_cols=67 Identities=30% Similarity=0.360 Sum_probs=43.5
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh--ccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN--TNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~--~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
+.|+.++.+|..+++.|+..-+..+..-.+|+..++. +|.+|....+.-+-.+-++..++..+|+..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456666666666666666666666666666666654 456666666666666777777777777644
No 14
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.49 E-value=58 Score=31.44 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=24.6
Q ss_pred CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 243 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 243 ~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
+.|..++.++. .-+.++..+.++.+.+++++..+++.+++-.+++..
T Consensus 189 ~~g~is~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 189 EKGLVSRLELL----ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HcCCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555553 123344455555555555665555555555555443
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.68 E-value=12 Score=39.39 Aligned_cols=56 Identities=32% Similarity=0.389 Sum_probs=34.5
Q ss_pred CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh----ccHHHHHHHHHhh
Q 019657 243 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN----TNNQLERALEVER 309 (337)
Q Consensus 243 ~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~----~n~qle~ale~er 309 (337)
.+|.||..- ||+|.|++.+++.|+....+.=..=.+|-.++|. .+.|...|++.||
T Consensus 52 iegDTP~DT-----------lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~ 111 (472)
T TIGR03752 52 IEGDTPADT-----------LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSET 111 (472)
T ss_pred CCCCCccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 469999865 4666677777777766665533333333444444 4555777887766
No 16
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.40 E-value=31 Score=37.31 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh
Q 019657 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV 250 (337)
Q Consensus 214 LIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv 250 (337)
-++|+.+....+.+++-..+.++.+|++..+-..+..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ 304 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNL 304 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 4789999999999999999999999999854334333
No 17
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.88 E-value=37 Score=37.03 Aligned_cols=107 Identities=28% Similarity=0.371 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhhhhcccC-----CCCCchhhhHhhhhhchhHH--h--hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh
Q 019657 226 SEEILRLQECLSKYEQSD-----DGSTPQVDLAHLLAARDQEL--R--TLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (337)
Q Consensus 226 SkrIL~Lq~~l~kye~~~-----~gstpqvdl~h~la~r~qel--R--a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (337)
-.+|=.+++.+.+|.+.. ||-+---.|-.==|+++++. + .+.+|+.|++.||...+++.+.=.+..+.+..
T Consensus 63 R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 63 RTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357888899999998763 34444444544457888876 2 78888899988888888877666555555555
Q ss_pred ccHHHH------------------------HHHHHhhhccHHHHHHHHHhhhcCCCCCccccc
Q 019657 297 TNNQLE------------------------RALEVERMSNIELQKKISTRRNQHGPAESNEHD 335 (337)
Q Consensus 297 ~n~qle------------------------~ale~er~~~~~~~~~~~~~r~~~~~~~~~~~~ 335 (337)
.|..+| --||+| |+-|||+++.+|+++.+-|.-.|+
T Consensus 143 ~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE---NIsLQKqVs~LR~sQVEyEglkhe 202 (772)
T KOG0999|consen 143 SNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE---NISLQKQVSNLRQSQVEYEGLKHE 202 (772)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHhhhhhhhhHHHHH
Confidence 444310 124554 778999999999998776655544
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.77 E-value=21 Score=39.05 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.3
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhhcCC
Q 019657 301 LERALEVERMSNIELQKKISTRRNQHG 327 (337)
Q Consensus 301 le~ale~er~~~~~~~~~~~~~r~~~~ 327 (337)
|||=|.+||..-.++.|++.+.|.+.+
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999998887663
No 19
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.76 E-value=73 Score=32.08 Aligned_cols=90 Identities=28% Similarity=0.402 Sum_probs=56.5
Q ss_pred HHHHHHH---hHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHH
Q 019657 215 LQYQREN---LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEV 291 (337)
Q Consensus 215 IrYLkdh---Na~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~ 291 (337)
..|.++- .-.|+++|-+|+.+. +||++.|.+. || ..+|.++..+...+........+.
T Consensus 98 ~~~e~EEE~ltn~L~rkl~qLr~EK-------------~~lE~~Le~E-qE-----~~V~kL~k~i~~Le~e~~~~q~~l 158 (310)
T PF09755_consen 98 LKYEQEEEFLTNDLSRKLNQLRQEK-------------VELENQLEQE-QE-----YLVNKLQKKIERLEKEKSAKQEEL 158 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHh-HH-----HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3555532 234666666666554 5666666542 22 456777777777766666667777
Q ss_pred HHHHhccHHHHHHHHHh----------hhccHHHHHHHHHhh
Q 019657 292 LRVRNTNNQLERALEVE----------RMSNIELQKKISTRR 323 (337)
Q Consensus 292 ~~~r~~n~qle~ale~e----------r~~~~~~~~~~~~~r 323 (337)
.++|..--.||.+||.| ||+.++-.|...+-+
T Consensus 159 e~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 159 ERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888777799999987 556665555544433
No 20
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.85 E-value=7.2 Score=42.88 Aligned_cols=82 Identities=30% Similarity=0.392 Sum_probs=47.8
Q ss_pred CCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH---------H------------
Q 019657 244 DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL---------E------------ 302 (337)
Q Consensus 244 ~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql---------e------------ 302 (337)
||-+---+|-.==|+||.++. ..+.-++.|++.+|..+..-.+|..|+-..|+.+ |
T Consensus 13 ~g~~~Ee~Ll~esa~~E~~~~---~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 13 DGEEREESLLQESASKEAYLQ---QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred cchhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444466777664 2223345556666666666666666665555551 0
Q ss_pred ----------HHHHHhhhccHHHHHHHHHhhhcCCCCCc
Q 019657 303 ----------RALEVERMSNIELQKKISTRRNQHGPAES 331 (337)
Q Consensus 303 ----------~ale~er~~~~~~~~~~~~~r~~~~~~~~ 331 (337)
--||+| |+-|||+++.+|+++.+-|.
T Consensus 90 ~rE~rll~dyselEeE---NislQKqvs~Lk~sQvefE~ 125 (717)
T PF09730_consen 90 FREARLLQDYSELEEE---NISLQKQVSVLKQSQVEFEG 125 (717)
T ss_pred HHHHHHhhhhHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence 124554 88899999999998755443
No 21
>PRK11519 tyrosine kinase; Provisional
Probab=70.31 E-value=49 Score=35.85 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC
Q 019657 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDD 244 (337)
Q Consensus 212 ADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~ 244 (337)
..-+.|+.+....+.+++=..+..+.+|++..+
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367889999999999999999999999998743
No 22
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.18 E-value=23 Score=27.58 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 272 QLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 272 q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.|++|+++=.++= .|+.++++.|...|.=|.+...-|-+|..+|..++.+.
T Consensus 5 aL~~EirakQ~~~----eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 5 ALEAEIRAKQAIQ----EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666544442 36788999999999999999999999999999888653
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.17 E-value=45 Score=35.87 Aligned_cols=58 Identities=21% Similarity=0.407 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH-------HHHHHHhhhccHHHHHHHHHhhh
Q 019657 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL-------ERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql-------e~ale~er~~~~~~~~~~~~~r~ 324 (337)
-.-++++++|+..+.+.|.-=+.|..+|+..|.+| .-.|++|.+.-.+++-++.+|+.
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455566666666666666666666676666663 33456666666666666665554
No 24
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.81 E-value=51 Score=36.60 Aligned_cols=67 Identities=28% Similarity=0.437 Sum_probs=55.2
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhHHh--------HHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 260 DQELRTLSAEMNQLQSELRLARSFVAER--------EAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er--------~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.-||+-+-.|.|.+-+||++.=.+|..+ ++|.+.+...++|||+.|..-+=+-.++.-++...|.+.
T Consensus 477 ~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5689999999999999999999999665 689999999999999888776666666666666666654
No 25
>PRK11637 AmiB activator; Provisional
Probab=67.06 E-value=87 Score=31.58 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=45.5
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (337)
+.+.+.++|..+++.-..|....-.|...+. ++.-+++..+++...|.+++++-+.++..-.+.+.+
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~-------------~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELEEKQS-------------QQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666555555544442 344455555555555555555555555555555555
Q ss_pred hHHHHHHHHhccHHHH
Q 019657 287 REAEVLRVRNTNNQLE 302 (337)
Q Consensus 287 r~~e~~~~r~~n~qle 302 (337)
+++++..++..-.+|+
T Consensus 231 ~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 231 DQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444443
No 26
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.60 E-value=43 Score=26.45 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=46.7
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
++.||...||..+..+-.-++-=+.+...|+..|+..++.|-.-...|.+|+.++..++.+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777778888777777777777777888888887777653
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.96 E-value=25 Score=30.52 Aligned_cols=80 Identities=28% Similarity=0.357 Sum_probs=45.9
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch-hhh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ-VDL---AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpq-vdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (337)
.|.-..+.+--++-.++.++++-+..-|.-... |.+ ..-+.+-..++..+.+++..++.....+--+++||.-++.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 555555566666666666665555543322211 122 1112333345556777777777777788888888887776
Q ss_pred HHHh
Q 019657 293 RVRN 296 (337)
Q Consensus 293 ~~r~ 296 (337)
-+|.
T Consensus 100 EL~~ 103 (120)
T PF12325_consen 100 ELRA 103 (120)
T ss_pred HHHH
Confidence 6553
No 28
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=63.87 E-value=4.4 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhhcccccc
Q 019657 46 CFVLAGYAILAAGTTWIFHPIHY 68 (337)
Q Consensus 46 ~~lL~~~A~~~~~~~wi~~~~~~ 68 (337)
.|+|.||+++++++.|++....|
T Consensus 19 vIil~GF~~Va~~si~lLs~~~d 41 (42)
T TIGR02808 19 FIILSGFVAVAVTSILLLNAFGD 41 (42)
T ss_pred hHHhhhhHHHHHHHHHHHHhhcC
Confidence 47899999999999999765443
No 29
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.04 E-value=86 Score=30.31 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=13.3
Q ss_pred hhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 264 RTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
..+.+++.++++++..++..++.-+.++.+
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~ 183 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQLEVISEELEA 183 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 30
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=63.01 E-value=58 Score=27.08 Aligned_cols=58 Identities=34% Similarity=0.434 Sum_probs=44.7
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH--hHHHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE--REAEVLRV 294 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e--r~~e~~~~ 294 (337)
|+.+.|..|.++|-.|+.++ ++. .|+=-.+.|-.+++.|++.-+++-.+ |+..++.|
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv---e~n------------------Pevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~ei 79 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV---EHN------------------PEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEI 79 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HhC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788899999999999988 443 35556778999999999999999984 44444444
Q ss_pred H
Q 019657 295 R 295 (337)
Q Consensus 295 r 295 (337)
-
T Consensus 80 s 80 (86)
T PF12711_consen 80 S 80 (86)
T ss_pred H
Confidence 3
No 31
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=62.73 E-value=1.4e+02 Score=28.08 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhh----hhHHHHHHHhhcccccchhhhhHHHHHHHH
Q 019657 84 LTGIFQQYFVYQVQKIRL----QGYYSFSQKLKHIVRLPFAITAYGTAAMLL 131 (337)
Q Consensus 84 lt~l~d~yv~~qH~KlRl----~GYl~FYr~Tr~lkRlPl~IvSlGna~LLL 131 (337)
+++.+-...++.|++... ..-.++|+++.+--..+..+........++
T Consensus 64 ~~~~~~~~~~k~~~~~~~~~deD~~~~~~~~~~r~~~~~~i~~~i~~i~~~~ 115 (248)
T PF11368_consen 64 LTFYFIYKSRKYKKLYEEEEDEDENEEYYRKMNRKLEYATIFFNISIIISFL 115 (248)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666554 356678888877655544444444333333
No 32
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.13 E-value=1.1e+02 Score=30.97 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC
Q 019657 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDD 244 (337)
Q Consensus 212 ADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~ 244 (337)
.+.+.|+.+.+..+.+++-..+..+.+|++...
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357889999999999999999999999987643
No 33
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.32 E-value=1.1e+02 Score=31.01 Aligned_cols=64 Identities=20% Similarity=0.407 Sum_probs=51.4
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHh--hhcc----HHHHHHHHHhhh
Q 019657 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVE--RMSN----IELQKKISTRRN 324 (337)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~e--r~~~----~~~~~~~~~~r~ 324 (337)
||.|+..++++.++.+.+.+-.-+.+|..++.+|-....+.-.-+|+. +||+ +..++-+.++|.
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 377999999999999999999999999999999988887776666654 4544 355666666665
No 34
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=59.91 E-value=1e+02 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHh
Q 019657 210 EQMALLQYQRENLHFLSEEILRLQECL 236 (337)
Q Consensus 210 KQADLIrYLkdhNa~LSkrIL~Lq~~l 236 (337)
+||+|+.-|+.=....=+++=.|..++
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777666655555555555555555
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.74 E-value=72 Score=27.52 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=34.5
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHh
Q 019657 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTR 322 (337)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~ 322 (337)
++.+.+++..++..+.....-+++-+.++..+..--++++..+..+.-.+-..+.++.++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777776666655555555444444444444444433333
No 36
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=58.27 E-value=7 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.677 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhhhccccc
Q 019657 46 CFVLAGYAILAAGTTWIFHPIH 67 (337)
Q Consensus 46 ~~lL~~~A~~~~~~~wi~~~~~ 67 (337)
.|+|.||+++++.+.|+.....
T Consensus 19 vI~L~GF~~Vav~~~~lL~~~~ 40 (42)
T PF09574_consen 19 VIILSGFAAVAVASIWLLSLTK 40 (42)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc
Confidence 4889999999999999976544
No 37
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.30 E-value=1.1e+02 Score=34.88 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhh
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSK 238 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~k 238 (337)
+=|.|++.|+..|..|+-.|+..+-.
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998887743
No 38
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=57.22 E-value=17 Score=29.19 Aligned_cols=48 Identities=19% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcccCCCCCCCCCCCccccCC
Q 019657 151 IMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDG 204 (337)
Q Consensus 151 il~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~ 204 (337)
++.+=+|+++..+++|.++-++=+.+.++|+-.+.++. -.-.+||.|.
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~------~~~kT~yVd~ 52 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTTQNTNPSTENYEKM------ENLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhcCCc------cccchhHHhc
Confidence 33444566778889999999999999999987222222 3335788873
No 39
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.34 E-value=74 Score=29.38 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=22.8
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHH
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALE 306 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale 306 (337)
......+.++.++...+..|.++..++..+|..+.+.+..|+
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555566666655554444
No 40
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=55.76 E-value=53 Score=32.39 Aligned_cols=45 Identities=29% Similarity=0.291 Sum_probs=32.0
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHH
Q 019657 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERAL 305 (337)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~al 305 (337)
+||+.+..|..++..|++......++-+.+..+.-...|++...+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778888888888887777777777766666666654433
No 41
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.58 E-value=98 Score=32.84 Aligned_cols=88 Identities=32% Similarity=0.308 Sum_probs=47.6
Q ss_pred hhHhHHHHHHHHHHHhHHhh---HHHHHHHHHhhhhc-ccCCCCCchhh-hHhhhhhchhHHhhhHHHHHhHHHHHHH--
Q 019657 207 LSDEQMALLQYQRENLHFLS---EEILRLQECLSKYE-QSDDGSTPQVD-LAHLLAARDQELRTLSAEMNQLQSELRL-- 279 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LS---krIL~Lq~~l~kye-~~~~gstpqvd-l~h~la~r~qelRa~~Ae~~q~~~el~~-- 279 (337)
++|.+-.++..= -+.|. +++++=...+..++ ++.+.+|-|.. |..--+.+++-++++.++++|+|+|+..
T Consensus 289 v~dt~w~~lqke---grqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qm 365 (542)
T KOG0993|consen 289 VLDTLWFILQKE---GRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQM 365 (542)
T ss_pred ChHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677666554322 12222 23333333333332 33444444442 2333456778889999999999998764
Q ss_pred -----HHhhhHHhHHHHHHHHhccHH
Q 019657 280 -----ARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 280 -----ar~li~er~~e~~~~r~~n~q 300 (337)
++--|++ |..|+|..|+-
T Consensus 366 a~lv~a~e~i~~---e~~rl~q~nd~ 388 (542)
T KOG0993|consen 366 ARLVVASETIAD---EDSRLRQINDL 388 (542)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHh
Confidence 3334444 44566666654
No 42
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.57 E-value=16 Score=36.60 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=29.8
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
.+-.+|+..-.+|+-.-|.||++=-.+||+|++|+|+
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3344566667777777888899999999999999998
No 43
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=55.53 E-value=82 Score=34.41 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=40.3
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhh
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFV 284 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li 284 (337)
+=..+++-.|+-+|.+.-- .+=.....+-=|.-.+++..++ +++.+++ .+.+|+.+|++|++.-+.-|
T Consensus 32 ~G~~~~IWkfli~~V~s~r-tV~~iRgNl~~~~~~~~~~~~~--------~~e~~~~~r~~L~~everLraei~~l~~~I 102 (632)
T PF14817_consen 32 RGNMAPIWKFLIQHVRSQR-TVRKIRGNLLWYGHQQSKERKK--------SRENEARRRRELEKEVERLRAEIQELDKEI 102 (632)
T ss_pred ccCChHHHHHHHHHcCcHh-HHHHHHcceeeccccccccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999988542 2323333343454444443444 4454442 44455555555555555555
Q ss_pred HHhHHHHH
Q 019657 285 AEREAEVL 292 (337)
Q Consensus 285 ~er~~e~~ 292 (337)
..++.|+.
T Consensus 103 ~~~e~e~~ 110 (632)
T PF14817_consen 103 ESREREVS 110 (632)
T ss_pred HHHHHHHH
Confidence 44444443
No 44
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.28 E-value=1.4e+02 Score=27.70 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=45.8
Q ss_pred HHHHhHHHHHHHHHhhhHHhHHHHHHH----HhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 268 AEMNQLQSELRLARSFVAEREAEVLRV----RNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~----r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
+|.+.++.+|..+..-+++.|..|+.+ +.+|+...|-|-.|+-+..+++.++..+..
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ 178 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQE 178 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999998854 556666888888999888888887776543
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.74 E-value=58 Score=29.51 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=27.2
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhc
Q 019657 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (337)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (337)
-+...+.+++.+.+|..+++.+++.-...|.|++..++.++..
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777777777777777766665543
No 46
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=53.26 E-value=1.4e+02 Score=31.37 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=37.4
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHH
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQK 317 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~ 317 (337)
.+...+..+..||.-++..|..-..|+..+|....-|+.=|+.++-.--.+++
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777778888888888888888888888877766655555544444443
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.02 E-value=47 Score=36.53 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=32.3
Q ss_pred HHHHHHHhccHH-------HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 289 AEVLRVRNTNNQ-------LERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 289 ~e~~~~r~~n~q-------le~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.|++++|..|++ |.++.+.||-+-..|.|++...|.+.
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R 504 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQR 504 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988 68899999999889999998887754
No 48
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.01 E-value=96 Score=29.33 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=60.4
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCC-chh--hhHhhhhhchhHHhh--------------hHHHHHhHHHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGST-PQV--DLAHLLAARDQELRT--------------LSAEMNQLQSELRL 279 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gst-pqv--dl~h~la~r~qelRa--------------~~Ae~~q~~~el~~ 279 (337)
=||...+.|-.+|.+.+....+.... +.+. ..| .+.-||+-.+++||. +...++-+.+++..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~-~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSD-TDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 48889999999999999998765222 2222 222 778899977777654 56788888999999
Q ss_pred HHhhhHHhHHHHHHHH
Q 019657 280 ARSFVAEREAEVLRVR 295 (337)
Q Consensus 280 ar~li~er~~e~~~~r 295 (337)
-.+-+..|..|++.+|
T Consensus 179 Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 179 LESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999886
No 49
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=52.87 E-value=1.5e+02 Score=26.49 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHhhhHHhHHHHHHHHhccHHHH
Q 019657 271 NQLQSELRLARSFVAEREAEVLRVRNTNNQLE 302 (337)
Q Consensus 271 ~q~~~el~~ar~li~er~~e~~~~r~~n~qle 302 (337)
-+|..++..+.+++..|+..|.++...|..|+
T Consensus 64 ~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 64 AQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34555566677777778888877777776643
No 50
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.74 E-value=1.9e+02 Score=31.29 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCC
Q 019657 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDG 245 (337)
Q Consensus 214 LIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~g 245 (337)
-++||.+....+.+++-.-..++.+|++..+-
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999987443
No 51
>PRK11637 AmiB activator; Provisional
Probab=51.64 E-value=2.2e+02 Score=28.76 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=7.0
Q ss_pred hHHhHHHHHHHHhccH
Q 019657 284 VAEREAEVLRVRNTNN 299 (337)
Q Consensus 284 i~er~~e~~~~r~~n~ 299 (337)
..||+.++..++..-.
T Consensus 214 k~e~~~~l~~L~~~~~ 229 (428)
T PRK11637 214 RNERKKTLTGLESSLQ 229 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.56 E-value=43 Score=31.76 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=35.1
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHH
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALE 306 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale 306 (337)
.-+.+...++.|++..|.-|..-..++..++..|..||+.+.
T Consensus 206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 345667788899999999999999999999999999877664
No 53
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.50 E-value=3e+02 Score=28.92 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHH----HHHHhhhccHHHHHHHHHhhh
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLER----ALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~----ale~er~~~~~~~~~~~~~r~ 324 (337)
+|.+..+++..-+.|+..+++...++...+++.+..+.+++. -+++++-+.-||+.|=+.+++
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~ 238 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444555666666788888888889999999999888777444 444455555555555555444
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.20 E-value=36 Score=30.86 Aligned_cols=60 Identities=27% Similarity=0.329 Sum_probs=27.3
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
.+..++..+..++..-...|++=.+++..++....+++..+++-.-.+..|+..+.++.-
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555667777777666666666666543
No 55
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.57 E-value=1.8e+02 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCC
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGS 246 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gs 246 (337)
..+.|+.+....+.+++-..+..+.+|++..+-.
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3478999999999999999999999999985543
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.06 E-value=1.9e+02 Score=25.56 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHh
Q 019657 225 LSEEILRLQECL 236 (337)
Q Consensus 225 LSkrIL~Lq~~l 236 (337)
+.+++-.++.++
T Consensus 100 l~~~~~~~~~~l 111 (191)
T PF04156_consen 100 LQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.05 E-value=92 Score=29.23 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (337)
+-.+|-.--.=.++-+..|.+++-.|+.++++-+.+-+ +-.-++...++.++++.-.|..|-.+++.|+..++..+++
T Consensus 80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444566667777888888888866443311 1222555666666666655666666666666655554444
Q ss_pred hHHH
Q 019657 287 REAE 290 (337)
Q Consensus 287 r~~e 290 (337)
=+++
T Consensus 158 l~~~ 161 (206)
T PRK10884 158 ANLQ 161 (206)
T ss_pred HHHH
Confidence 3333
No 58
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.92 E-value=1.7e+02 Score=31.38 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=49.1
Q ss_pred HHHHHHhHHhhH----------HHHHHHHHhhhhcccCCCC-CchhhhHhhhh--hchhHHh------hhHHHHHhHHHH
Q 019657 216 QYQRENLHFLSE----------EILRLQECLSKYEQSDDGS-TPQVDLAHLLA--ARDQELR------TLSAEMNQLQSE 276 (337)
Q Consensus 216 rYLkdhNa~LSk----------rIL~Lq~~l~kye~~~~gs-tpqvdl~h~la--~r~qelR------a~~Ae~~q~~~e 276 (337)
+|-|+|..++.+ .+..||++|.|-...++.. +-.+||..-+. -|=.|+| ..-.|+.||+-+
T Consensus 238 k~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 477888888887 5677888887765554433 77788877776 3333554 333577888888
Q ss_pred HHHHHhhhHHh
Q 019657 277 LRLARSFVAER 287 (337)
Q Consensus 277 l~~ar~li~er 287 (337)
|+.|.-.+.-+
T Consensus 318 L~kAEkele~n 328 (575)
T KOG4403|consen 318 LEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHhc
Confidence 88876666554
No 59
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.74 E-value=77 Score=33.16 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=35.2
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHh
Q 019657 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTR 322 (337)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~ 322 (337)
.+++++.+.....|..++.++++..+-..+.=+++|..+.+..+++|.+|-+--...-+++|+|+.+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3344455555555555555555555555555555555555555555555544444444444444443
No 60
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.56 E-value=81 Score=26.40 Aligned_cols=54 Identities=31% Similarity=0.325 Sum_probs=39.0
Q ss_pred hHhhhhhchhHHhhh--HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHh
Q 019657 252 LAHLLAARDQELRTL--SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVE 308 (337)
Q Consensus 252 l~h~la~r~qelRa~--~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~e 308 (337)
.+..+.+=|++++.+ ..++++++-++..-++.+++=.+.++.| |.|++.-||.|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v---~~~~~lLlE~~ 102 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV---SHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 355566667777777 6778888888888888887777666544 77877777764
No 61
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.88 E-value=2.4e+02 Score=26.77 Aligned_cols=96 Identities=28% Similarity=0.275 Sum_probs=72.2
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhc
Q 019657 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (337)
Q Consensus 218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (337)
+..-+..|..+|-.||++-.|-...-|| +..|-.+|- .+..-+|..+--.-++|..||+.++..-.-
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~----------lk~~~~eL~---~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~ 159 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDG----------LKKRSKELA---TEKATLQRQLCEFESLICQRDAILSERTQQ 159 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhh----------HHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677888888888887655444332 333444443 356668888889999999999999887655
Q ss_pred cHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 298 NNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 298 n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
=+.|..++|+=|.-+-|||-+++.+=.|.
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999886654
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=47.88 E-value=2.9e+02 Score=32.33 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCCCCchhhcccCC----CCCCC---CCCCccccCC--CchhHhHHHHHHHHHHHhHHhhHHHHHHHHHhh
Q 019657 167 IGYVHQYNSLNSQPDVMKSLYSP----LQPSS---SLEGLRYHDG--GRLSDEQMALLQYQRENLHFLSEEILRLQECLS 237 (337)
Q Consensus 167 IvkV~rFNk~kp~PDVl~ee~s~----~~ps~---s~~E~Gfrd~--g~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~ 237 (337)
+.++.++|+ |||-|..-.-.. .++.+ -.+..|.+.+ +.+-.-=.|-|++|+.-...|-++++.++.+++
T Consensus 608 a~~~m~s~~--~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 608 AREFMQSDK--PPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred HHHHHhcCC--CCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788887 666665432111 11111 0122233222 323333346799999999999999999999999
Q ss_pred hhcccCCCCCchhh-hHhhhhhchhHHhhhHHHHHhHHH
Q 019657 238 KYEQSDDGSTPQVD-LAHLLAARDQELRTLSAEMNQLQS 275 (337)
Q Consensus 238 kye~~~~gstpqvd-l~h~la~r~qelRa~~Ae~~q~~~ 275 (337)
+++..-+..--.++ +.--.-..+..++..-+||++++.
T Consensus 686 ~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 686 EAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887433221111 122222333455566666666655
No 63
>PLN03188 kinesin-12 family protein; Provisional
Probab=47.82 E-value=55 Score=38.53 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=51.3
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhc
Q 019657 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (337)
Q Consensus 221 hNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (337)
|-+.|-++=..|-+ |-++..+|-..-=-.|.--..|+.|.| ||+||+.-|.. ||+.|-..+|..
T Consensus 1115 ~ya~l~ek~~~ll~---~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~----------ereker~~~~~e 1181 (1320)
T PLN03188 1115 QYADLEEKHIQLLA---RHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKV----------EREKERRYLRDE 1181 (1320)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHh
Confidence 33444444444432 234444453321122444445666887 89999876664 466666666666
Q ss_pred cHH--------------------------------HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 298 NNQ--------------------------------LERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 298 n~q--------------------------------le~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
|.- -|||.++|- -|-++.|+|.+|+...
T Consensus 1182 nk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eq-e~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1182 NKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQ-EAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 654 155555553 3566778788887644
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.75 E-value=2.1e+02 Score=25.33 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=6.9
Q ss_pred HHhhHHHHHHHHHhhh
Q 019657 223 HFLSEEILRLQECLSK 238 (337)
Q Consensus 223 a~LSkrIL~Lq~~l~k 238 (337)
..|.+++-.+++..+.
T Consensus 91 ~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 91 QQLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.43 E-value=1.4e+02 Score=27.60 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=45.1
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (337)
+.+++.++.+= +..+..|.++|-..=+.-+.+ .-.+-..+..-.......+..+..++.+++.++...|..|++
T Consensus 22 L~~~~~~l~~~-~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 22 LLELRSELQQL-KEENEELRRRIEEILESDSNG-----QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777666653 344455555544432211000 001111223333333445557777777777777777777777
Q ss_pred hHHHHHHHHhc
Q 019657 287 REAEVLRVRNT 297 (337)
Q Consensus 287 r~~e~~~~r~~ 297 (337)
+..+++.-|..
T Consensus 96 ~~~~l~~~~~~ 106 (302)
T PF10186_consen 96 LRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.10 E-value=1.7e+02 Score=31.64 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=20.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 301 LERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 301 le~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
+|..|-.||+.+.-|++++.+.+.+.
T Consensus 383 ~e~~lqEer~E~qkL~~ql~ke~D~n 408 (546)
T PF07888_consen 383 LEEHLQEERMERQKLEKQLGKEKDCN 408 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57788889999999999888766544
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.19 E-value=1.4e+02 Score=28.01 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.9
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhh
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRR 323 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r 323 (337)
....+.|+...|-..-...+..=.+|+..++.-|+++++-++..+-.-.+|++++.+..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666777777777777777766666555556665555443
No 68
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.67 E-value=2.4e+02 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=11.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhh
Q 019657 301 LERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 301 le~ale~er~~~~~~~~~~~~~r~ 324 (337)
|+|-.|.-|-.=..+.+++.+.+-
T Consensus 381 L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 381 LQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444443
No 69
>PHA03049 IMV membrane protein; Provisional
Probab=44.61 E-value=31 Score=27.71 Aligned_cols=47 Identities=17% Similarity=0.049 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcccCCCCCCCCCCCccccCC
Q 019657 152 MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDG 204 (337)
Q Consensus 152 l~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~ 204 (337)
+.+=+|+++..+++|.++-++=+-+.++|-.-+.|+. -.-.+||+|.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~------e~~kT~yvD~ 52 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKM------EDLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCc------hhhhhhHHhh
Confidence 3344566777889999999998888888864333333 3335788873
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=43.99 E-value=3e+02 Score=26.71 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=22.3
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (337)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (337)
++++.|+++|.-|++.++......+..|++=+-++..+
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666776676666666666666555544444443
No 71
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=43.83 E-value=1.9e+02 Score=24.03 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=53.7
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh--HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ--ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~q--elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (337)
++.+...+.+++-.++.+++-.++.+.++...++....+.-+.+ .+.....-.+.+.+-|..+-.-+.+=..-++++|
T Consensus 10 ~~~~l~~~~~~l~~~~~qlsTG~k~~~~sd~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~ 89 (139)
T PF00669_consen 10 ALNNLNKLQSNLNKLQEQLSTGKKINSPSDDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRAR 89 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--TTTCGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999998888888888777665554 3334445555566666666666666666666665
Q ss_pred h
Q 019657 296 N 296 (337)
Q Consensus 296 ~ 296 (337)
+
T Consensus 90 ~ 90 (139)
T PF00669_consen 90 E 90 (139)
T ss_dssp H
T ss_pred H
Confidence 5
No 72
>PRK15396 murein lipoprotein; Provisional
Probab=43.44 E-value=64 Score=26.29 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=24.7
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
++-+|.++.+|+.++...+|+-+..=..|..|
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888888888888888877766665554
No 73
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=43.42 E-value=2.2e+02 Score=32.16 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=53.4
Q ss_pred HHHHHHHHHHH-------hHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhH-HhhhHHHHHhHHHHHHHHHh
Q 019657 211 QMALLQYQREN-------LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQE-LRTLSAEMNQLQSELRLARS 282 (337)
Q Consensus 211 QADLIrYLkdh-------Na~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qe-lRa~~Ae~~q~~~el~~ar~ 282 (337)
|..+|+.||-. ..++|+.|-.|+.+.++-++.-+|-+.- ..--+| +-.+.||+.-...+...-|+
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~-------Ek~~~E~I~k~~ae~~rq~~~~~~sr~ 544 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEET-------EKLLQETIEKHQAELTRQKDYYSNSRA 544 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34577777632 4567777777777777777664433210 000112 13677777777777778888
Q ss_pred hhHHhHHHHHHHHhccHH
Q 019657 283 FVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 283 li~er~~e~~~~r~~n~q 300 (337)
++++.++....+-++||-
T Consensus 545 ~~~~le~~~~a~qat~d~ 562 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDE 562 (961)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 888888888888888776
No 74
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=43.03 E-value=50 Score=35.24 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.3
Q ss_pred CCCCccccCCCchhHhHHHHH---HHHHH
Q 019657 195 SLEGLRYHDGGRLSDEQMALL---QYQRE 220 (337)
Q Consensus 195 s~~E~Gfrd~g~LlEKQADLI---rYLkd 220 (337)
.-||.+|..-|.++=|.|++- .|.+|
T Consensus 239 pDGesR~Y~iG~lSIQrAAv~vLe~Yy~d 267 (505)
T PF06638_consen 239 PDGESRFYNIGQLSIQRAAVWVLEKYYKD 267 (505)
T ss_pred CCCceeeeecCchhHHHHHHHHHHHHhhc
Confidence 456778887777777777653 35555
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.81 E-value=3.3e+02 Score=29.56 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=57.8
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCC--CCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh--------
Q 019657 215 LQYQRENLHFLSEEILRLQECLSKYEQSDD--GSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV-------- 284 (337)
Q Consensus 215 IrYLkdhNa~LSkrIL~Lq~~l~kye~~~~--gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li-------- 284 (337)
.|||...|+.|...|=-|+...++--..-. =.++-.++-.+++.-..+.=.+-.|.+.++.|+.-+|...
T Consensus 58 VR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 58 VRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 478888888888887777666532111100 0012224455555443333333344444444444444443
Q ss_pred -------------HHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 285 -------------AEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 285 -------------~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
++-++|+..+..-.+.+|-.+..=+-.|.-|+..+...|.+.
T Consensus 138 ~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 138 GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444444444456555555666666777776666543
No 76
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=42.18 E-value=1.6e+02 Score=27.10 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=35.2
Q ss_pred hhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhh
Q 019657 254 HLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVER 309 (337)
Q Consensus 254 h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er 309 (337)
.-++..++++=++.+.+.-...+|...+--|+.=++-|+..+..=+.|.|+.|.++
T Consensus 86 ~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~ 141 (158)
T TIGR02559 86 AHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAR 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555665555566666666666666666666666666666666777777654
No 77
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.90 E-value=1.3e+02 Score=31.48 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhH
Q 019657 211 QMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLA 253 (337)
Q Consensus 211 QADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~ 253 (337)
+.|.++|-++-...--+|+-.-+..|..|.....--.|+-+.+
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~ 282 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETIT 282 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHH
Confidence 6789999999999999999999999999987744446666543
No 78
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.27 E-value=83 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccH
Q 019657 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (337)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (337)
+.|+..+.+.|+-+.+.+.-|++||..+|+..+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~ 41 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLR 41 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445666666666666666666666666655433
No 79
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.86 E-value=86 Score=23.53 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=16.5
Q ss_pred hhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (337)
..+.+|+++++.++...+...++-+.++++++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555543
No 80
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.68 E-value=2.6e+02 Score=28.22 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=68.2
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC------------CCCchhhhHhhhhhchhHHhhhHHHHHhHHH
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDD------------GSTPQVDLAHLLAARDQELRTLSAEMNQLQS 275 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~------------gstpqvdl~h~la~r~qelRa~~Ae~~q~~~ 275 (337)
+|.=..=++.|.+.|..|=.+.-.|...-..||.-+. .+.-=.+|..-||.+-.|.+.--.|..++.+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344788999999999999888877777765422 3333346677777777777666666666655
Q ss_pred HHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 276 ELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
++ ...+...+.+=..|..|-.-|.+.+-+...|+.++..++.
T Consensus 242 qi-------vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 242 QI-------VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4445555555556666655555555555555555444443
No 81
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.36 E-value=3.9e+02 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=14.1
Q ss_pred HhhHHHHHHHHHhhhhcccCCCCCchh
Q 019657 224 FLSEEILRLQECLSKYEQSDDGSTPQV 250 (337)
Q Consensus 224 ~LSkrIL~Lq~~l~kye~~~~gstpqv 250 (337)
.|-.++..++.+++.....-....|.|
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v 284 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQY 284 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 344555555555555544333446665
No 82
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.34 E-value=1.7e+02 Score=25.42 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=9.2
Q ss_pred CCCchhhh----HhhhhhchhHHh
Q 019657 245 GSTPQVDL----AHLLAARDQELR 264 (337)
Q Consensus 245 gstpqvdl----~h~la~r~qelR 264 (337)
|.+|.+-+ ..-+-.+|.|+-
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~ 33 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELA 33 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH
Confidence 44455533 444444555443
No 83
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.04 E-value=3.5e+02 Score=26.05 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcccCCCCCCCCCCCccccCCCchhHhHHHHHHHHHHHhHHhhH---
Q 019657 151 IMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSE--- 227 (337)
Q Consensus 151 il~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~LlEKQADLIrYLkdhNa~LSk--- 227 (337)
++..=++|++...+-=+.+|+++++.- .+...|++ +.....|..+--|..+.|.++|=
T Consensus 47 ~i~~~~~villlfiDsvr~i~~~~~~~---------~~~~n~~~----------~~~a~~~~~~~l~raqrn~YisGf~L 107 (216)
T KOG1962|consen 47 TIATTMIVILLLFIDSVRRIQKYVSEY---------GSMANPTD----------QPLARTHLLEALFRAQRNLYISGFVL 107 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh---------hcccCCcc----------chHHHHHHHHHHHHHHhhhHHhHHHH
Confidence 344444444444444566777777621 11122221 12566777777777877777775
Q ss_pred -------HHHHHHHHhhhhcc
Q 019657 228 -------EILRLQECLSKYEQ 241 (337)
Q Consensus 228 -------rIL~Lq~~l~kye~ 241 (337)
|++.+=.++.+++.
T Consensus 108 FL~lvI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 108 FLSLVIRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 56666666655554
No 84
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.30 E-value=1.4e+02 Score=33.80 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=51.1
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch-hhh--Hh------hhhh------chhHH-h----hhHHHHHhHH
Q 019657 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ-VDL--AH------LLAA------RDQEL-R----TLSAEMNQLQ 274 (337)
Q Consensus 215 IrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpq-vdl--~h------~la~------r~qel-R----a~~Ae~~q~~ 274 (337)
.+=||--|+.|-+++=-|..++.+-|+++..+.++ .++ .. .|.. +.||+ . .+...++...
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 45678889999999999999999989887777533 332 11 1111 22333 2 2333444555
Q ss_pred HHHHHHHhhhHHhHHHHHH
Q 019657 275 SELRLARSFVAEREAEVLR 293 (337)
Q Consensus 275 ~el~~ar~li~er~~e~~~ 293 (337)
.|=+..+.+|.|+|-++..
T Consensus 469 ~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777888888888877654
No 85
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.22 E-value=1.6e+02 Score=26.18 Aligned_cols=59 Identities=31% Similarity=0.495 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhh----hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh
Q 019657 228 EILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRT----LSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (337)
Q Consensus 228 rIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa----~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (337)
++=+|++-...|.+..-+..|++-. +++.-+|.|. .-+-++.+++| +..||+||..+|.
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~---l~a~~~e~qsli~~yE~~~~kLe~e-------~~~Kdsei~~Lr~ 115 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVAR---LAAEIQEQQSLIKTYEIVVKKLEAE-------LRAKDSEIDRLRE 115 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccc---cccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3445556666677775444566533 5555566654 44444455544 5668888877764
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.13 E-value=3.9e+02 Score=26.28 Aligned_cols=88 Identities=25% Similarity=0.236 Sum_probs=51.3
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDL---AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
=+++....|-+++=.|++.... -+..++..| -.-|+.-+.++.+..+++++++.|+..-..-|++...+++.
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e-----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEE-----IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666533 133344433 22344444455566666667777777777777777777776
Q ss_pred HHhccHHHHHHHHHhh
Q 019657 294 VRNTNNQLERALEVER 309 (337)
Q Consensus 294 ~r~~n~qle~ale~er 309 (337)
+...=.++++-+|.-|
T Consensus 256 l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 256 LLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666666777776554
No 87
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=38.66 E-value=2.4e+02 Score=29.02 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=101.3
Q ss_pred cCcccCccCcccchhhHHHHHHHHHHHHHHhhhhhhcccccccch----------------hHHHHHHHHHHHHHHHHHH
Q 019657 27 EAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP----------------PLLCSCGVILLALTGIFQQ 90 (337)
Q Consensus 27 e~p~~~~r~~~~~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~----------------~lL~~~~v~LWllt~l~d~ 90 (337)
=.||-++.+. ++.| ++=+++.+..-++.+...|+|.-++.... ++.|..-+.-|-=.+.+.+
T Consensus 11 ~s~ldCs~~~-~~~~-~~t~~~ai~ii~~~f~r~~~l~~~~g~~lSf~WAEsn~fgF~~~~s~~c~~cl~~wT~~~fi~~ 88 (353)
T PF03268_consen 11 FSGLDCSAKA-KIRG-IFTRLIAIIIIALIFRRCWMLMQIEGKSLSFGWAESNMFGFMAMQSFVCAICLFGWTKNGFIPK 88 (353)
T ss_pred cCCcCcCccc-chHh-HHHHHHHHHHHHHHHHHHHHHHhcCCceeeeehhhcchhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3466665543 4443 44455555555666666677653332222 2677777888999999999
Q ss_pred HHHH--HHHHhhhhhHHH--HHHHhhc---ccccchhhhhHHHHHHHHHHHHhh-cc-ccccHHHHH-HHHHHHHHHHHH
Q 019657 91 YFVY--QVQKIRLQGYYS--FSQKLKH---IVRLPFAITAYGTAAMLLVIVWRP-HI-SILSISTLL-RIIMLIEAICAA 160 (337)
Q Consensus 91 yv~~--qH~KlRl~GYl~--FYr~Tr~---lkRlPl~IvSlGna~LLLI~~~~~-~~-~~Ls~~~il-riil~lElv~~l 160 (337)
+.+. +.+++|...+.+ =|++.+. +-.+|-.++-.++++.+.+.--.. .- .+-++.+++ =++..+=..++.
T Consensus 89 f~~~L~~lR~LRv~~n~~~D~Y~~lh~kafi~s~pw~v~~~s~aiy~~~~~ki~~~g~~~~~~~~~~~~~i~~l~~~is~ 168 (353)
T PF03268_consen 89 FEKKLARLRTLRVEPNQEIDDYRILHRKAFIFSIPWFVAFMSTAIYNAVHGKIIYGGAETSSWYYILDPFINFLCWYISF 168 (353)
T ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 9998 788888877654 2333332 223455555555555444441110 00 111222222 123334445566
Q ss_pred HHHHHHHHH-------HHHhcCCCCCCchhhcccCCCCCCCCCCCccccCCCchhHhHHHHHHHHHHHhHHhhH
Q 019657 161 SFMSVYIGY-------VHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSE 227 (337)
Q Consensus 161 ~~li~YIvk-------V~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~LlEKQADLIrYLkdhNa~LSk 227 (337)
.|+.+|.-- +..||.+=-. +.++... ..|+ .. ......|.+|+++-+.=|..||.
T Consensus 169 i~L~~y~lv~~al~REi~yFN~ELe~--A~keK~L-~n~~-vL--------~~F~~RQ~eL~~lv~~~ne~L~~ 230 (353)
T PF03268_consen 169 ICLAIYFLVNSALNREIEYFNEELEK--ASKEKKL-KNPQ-VL--------EKFSHRQIELFELVNFANESLSS 230 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccc-cChH-HH--------HHHhHHHHHHHHHHHHHHHhhhh
Confidence 677777543 6678762110 1111111 1111 11 12677899999999988888887
No 88
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=37.97 E-value=3.7e+02 Score=31.63 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=63.4
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh-----------hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 019657 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-----------DLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (337)
Q Consensus 214 LIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv-----------dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (337)
.|.-+++|+-..-...+.+--.=.+|..+.+|++|.- .|+--||.-+.-+|.|-+||..--+-+..+|.
T Consensus 126 ~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~ 205 (1195)
T KOG4643|consen 126 VIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRN 205 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655554444444444457888877765432 45556777777889999999999999999999
Q ss_pred hhHHhHHHHHHHHhccHH
Q 019657 283 FVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 283 li~er~~e~~~~r~~n~q 300 (337)
.|+-.++|+.++|..|-.
T Consensus 206 eLddleae~~klrqe~~e 223 (1195)
T KOG4643|consen 206 ELDDLEAEISKLRQEIEE 223 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999976644
No 89
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=37.56 E-value=75 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
=.|++||--|.+|+.+|..||..+.+|++.
T Consensus 235 yCL~~Lr~AN~~i~~~i~~Lq~~l~e~e~~ 264 (427)
T PF08618_consen 235 YCLHWLRLANAHIDSKINFLQDVLEEYERD 264 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999954
No 90
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=37.53 E-value=28 Score=28.71 Aligned_cols=33 Identities=18% Similarity=0.561 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~ 71 (337)
++||..||+..=+|.++=++.-|=+.|+-..+|
T Consensus 42 L~~Ga~FC~~~W~y~~TQ~GIeWNlSPVGRVtP 74 (80)
T PF05392_consen 42 LASGATFCVAVWTYVATQIGIEWNLSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSS------STTTS--
T ss_pred eecccchhhhhHhhhheecceeecCCcccccCc
Confidence 579999999999999999999999999887766
No 91
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=37.47 E-value=71 Score=33.58 Aligned_cols=69 Identities=26% Similarity=0.241 Sum_probs=49.5
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHhhcccccchhhh--hHHHHHHHH
Q 019657 61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVY-QVQKIRLQGYYSFSQKLKHIVRLPFAIT--AYGTAAMLL 131 (337)
Q Consensus 61 wi~~~~~~~~~~lL~~~~v~LWllt~l~d~yv~~-qH~KlRl~GYl~FYr~Tr~lkRlPl~Iv--SlGna~LLL 131 (337)
|+-...++.+-|++..+-++-|+.+.+.++|++. +-+|++++|-+--.-+.- ..+|...+ +.||++++-
T Consensus 69 ~l~~~~~~~~y~llll~~~vs~~~vllaq~y~~~~~wqkL~L~~alv~a~slL--ngl~~l~~ga~~~~a~l~s 140 (497)
T COG3851 69 WLTQAVGLAHYPLLLLGSVVSLLPVLLAQRYWHQRYWQKLLLQGALVTAASLL--NGLPPLWHGAESWNALLLS 140 (497)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--ccCChhhcCcHHHHHHHHH
Confidence 3344667888889999999999999999999976 778999999876655442 23444443 466665443
No 92
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=36.95 E-value=50 Score=29.76 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.2
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhH
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAERE 288 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~ 288 (337)
-+..|.+|+++|..+++.||+.=|..+
T Consensus 35 G~~~L~~El~~L~~~i~~Ar~~GDlsE 61 (160)
T PRK06342 35 GLKALEDQLAQARAAYEAAQAIEDVNE 61 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChhH
Confidence 356899999999999999988744443
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.65 E-value=3.6e+02 Score=27.42 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=8.2
Q ss_pred HHHHHHHhhhccHHHHHHHHH
Q 019657 301 LERALEVERMSNIELQKKIST 321 (337)
Q Consensus 301 le~ale~er~~~~~~~~~~~~ 321 (337)
|+|-.|..+--=..+.+++.+
T Consensus 360 L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 360 LNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333334333
No 94
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.62 E-value=1.2e+02 Score=28.20 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=44.1
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhh
Q 019657 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERM 310 (337)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~ 310 (337)
.....|.++..+...+-+++.+.......-.+.|+||.++-+-.++++.+++.-++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777888888888888888889999999999998888877765543
No 95
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.53 E-value=3.7e+02 Score=25.33 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=53.9
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchh---HH--hhhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ---EL--RTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (337)
Q Consensus 220 dhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~q---el--Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (337)
.-...+...|-.+-+++..|.. .+..+|.-|+...|+-=+. |+ |.+.-....+..|++.|..|+.+=+.+.+..
T Consensus 94 ~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~ 172 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKP 172 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344566677777888888877 4566888888877765544 44 3556666667788888888887777776554
Q ss_pred HhccHH
Q 019657 295 RNTNNQ 300 (337)
Q Consensus 295 r~~n~q 300 (337)
...|.-
T Consensus 173 ~~~~~~ 178 (264)
T PF06008_consen 173 QQENES 178 (264)
T ss_pred HHhhHH
Confidence 444443
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.42 E-value=4.9e+02 Score=26.64 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHH
Q 019657 216 QYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEV 291 (337)
Q Consensus 216 rYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~ 291 (337)
.=+++....+..++-.++.....|+. .+.-|.. ++... ++++=.+..+++.+++|++.....+++.+..+
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~~~--~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777888888877753 2332322 22222 44444455555555555555555555433333
No 97
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=36.40 E-value=1.1e+02 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhcCC
Q 019657 148 LRIIMLIEAICAASFM----SVYIGYVHQYNSL 176 (337)
Q Consensus 148 lriil~lElv~~l~~l----i~YIvkV~rFNk~ 176 (337)
.|++..+|.+..+.++ +.|..+|++-|+.
T Consensus 43 ~Rvltvle~va~l~~IPgtIiLY~aYir~L~~~ 75 (78)
T PHA02702 43 LRVLTVLDFVSLLTTIPCTIILYFLCMQALNSR 75 (78)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHHHHHhccc
Confidence 4677777877766543 7899999999873
No 98
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.17 E-value=3.6e+02 Score=30.13 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=36.7
Q ss_pred chhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhcc
Q 019657 259 RDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSN 312 (337)
Q Consensus 259 r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~ 312 (337)
+.|||-+=-+|.|+.+.|++ .+|-.++-|+.++...=.|-++++|+-|-.|
T Consensus 101 krqel~seI~~~n~kiEelk---~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELK---RLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHH---HHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 44677766677888777775 4677888888888877777777777655443
No 99
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.70 E-value=4.4e+02 Score=26.22 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=30.7
Q ss_pred hhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhh
Q 019657 254 HLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVER 309 (337)
Q Consensus 254 h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er 309 (337)
.-|+..++|+.....+.++++.|+..-.+-|.+-..+++.++..=+.+|+-+|.-|
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445555555556666666666666666666555555555555555444433
No 100
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.72 E-value=1.3e+02 Score=28.54 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhcccCCCCCchh-hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhc
Q 019657 228 EILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (337)
Q Consensus 228 rIL~Lq~~l~kye~~~~gstpqv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (337)
+|+.|..++..-...-+++.++. ++...+-++..|+-....|+.+..+|..+=|-=++..++|++.+|..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 68889888876666655665555 56777777777777777777777777776666677777777776653
No 101
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=33.85 E-value=1.6e+02 Score=33.26 Aligned_cols=75 Identities=29% Similarity=0.353 Sum_probs=57.1
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH------------------------HHHHHHHh
Q 019657 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ------------------------LERALEVE 308 (337)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q------------------------le~ale~e 308 (337)
++.++.|++.|.++.+......+.||+=-.-++|||+...+--..-+. -|||-=+.
T Consensus 536 e~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~aEaaa~Rlae~L~lREeA~~~~~~r~le~araeraa~~~ 615 (828)
T PF04094_consen 536 ERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRAEAAAQRLAEQLALREEAVEERERRHLESARAERAAMAA 615 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 788888999998887777778888988888888888776432222211 37777788
Q ss_pred hhccHHHHHHHHHhhhcCC
Q 019657 309 RMSNIELQKKISTRRNQHG 327 (337)
Q Consensus 309 r~~~~~~~~~~~~~r~~~~ 327 (337)
|.+.+|-|.|-..-|.+..
T Consensus 616 ra~eleArekel~a~~~~g 634 (828)
T PF04094_consen 616 RASELEAREKELAARGQSG 634 (828)
T ss_pred HHHHHHHHHHhhccccccC
Confidence 8999999998888888763
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=2.9e+02 Score=30.63 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=69.5
Q ss_pred CchhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 019657 205 GRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (337)
Q Consensus 205 g~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (337)
+.-+|++..=|+-|+.-+-.|-++|..|..++.++.+..+ .=...+.|+|+.--+.+-|.-+|.-....+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----------~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVR----------DKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4489999999999999999999999999999999998833 223456788888888888888888888877
Q ss_pred HHhHHHHHHHHhccH
Q 019657 285 AEREAEVLRVRNTNN 299 (337)
Q Consensus 285 ~er~~e~~~~r~~n~ 299 (337)
++=..++.++|.++.
T Consensus 498 e~L~~~l~~l~k~~~ 512 (652)
T COG2433 498 EELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777765554
No 103
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=33.56 E-value=2.1e+02 Score=22.97 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHhccHH-HHHHH
Q 019657 273 LQSELRLARSFVAEREAEVLRVRNTNNQ-LERAL 305 (337)
Q Consensus 273 ~~~el~~ar~li~er~~e~~~~r~~n~q-le~al 305 (337)
.+.+++..+..|.+.-.+++++-..|.+ ++.++
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~ 115 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQAL 115 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888777777 34443
No 104
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=33.36 E-value=93 Score=28.01 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCchh
Q 019657 152 MLIEAICAASFMSVYIGYVHQYNSLNS--QPDVM 183 (337)
Q Consensus 152 l~lElv~~l~~li~YIvkV~rFNk~kp--~PDVl 183 (337)
+.+=.++.+++.++|++|.-|+|+=+- +|+..
T Consensus 108 ~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l 141 (168)
T PF07099_consen 108 LFIILISFLSSFGIYLGRFLRLNSWDILTNPQSL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHH
Confidence 334456777889999999999999654 45443
No 105
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=33.19 E-value=4.1e+02 Score=27.90 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=48.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccchhhhhHHHHHHHHHH------HHhhcc-cc
Q 019657 69 LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVI------VWRPHI-SI 141 (337)
Q Consensus 69 ~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lkRlPl~IvSlGna~LLLI~------~~~~~~-~~ 141 (337)
...+-+..+=+++|++++++-.|+--.. ++.....+.. +.-+...++--+.++++. +|..+- +.
T Consensus 293 ~~rg~l~t~~i~~y~~~~~iaGy~S~~~--------yk~~~g~~W~-~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~a 363 (521)
T PF02990_consen 293 NNRGSLLTAAIILYALTSFIAGYVSARL--------YKSFGGKKWK-KNSILTSLLFPGILFSIFFILNFIAWSYGSSSA 363 (521)
T ss_pred cCcchHHHHHHHHHHHHhhHHHHHHHHH--------HHHcCCCcee-ehhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344677788999999999999987642 2222222222 212222222222222222 222221 34
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 019657 142 LSISTLLRIIMLIEAICAASFM--SVYIGY 169 (337)
Q Consensus 142 Ls~~~ilriil~lElv~~l~~l--i~YIvk 169 (337)
++...++ .++++=+++++|+. +.|++.
T Consensus 364 ipf~t~~-~l~~lw~~v~~PL~~lG~~~g~ 392 (521)
T PF02990_consen 364 IPFGTIL-FLIALWFFVSIPLTFLGGYFGF 392 (521)
T ss_pred cchHHHH-HHHHHHHHHhhhhhhcchhhhc
Confidence 6666666 56666677776654 667775
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=33.11 E-value=6.7e+02 Score=29.54 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=45.6
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhh---hhchhHH-------hhhHHHHHhHHHHH
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLL---AARDQEL-------RTLSAEMNQLQSEL 277 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~l---a~r~qel-------Ra~~Ae~~q~~~el 277 (337)
+..|-+.|.-.++-...|.+++=..+...+.+... +++-+--+..+. .+++.|+ +++.-|+|++..|.
T Consensus 283 l~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k--~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~ 360 (1074)
T KOG0250|consen 283 LNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK--LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI 360 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777666644 554444333332 3444444 34455555555555
Q ss_pred HHHHhhhHHhHHHH
Q 019657 278 RLARSFVAEREAEV 291 (337)
Q Consensus 278 ~~ar~li~er~~e~ 291 (337)
+.+-+-|.+-.+++
T Consensus 361 ~~~~n~i~~~k~~~ 374 (1074)
T KOG0250|consen 361 REIENSIRKLKKEV 374 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
No 107
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.15 E-value=3.1e+02 Score=27.37 Aligned_cols=83 Identities=28% Similarity=0.385 Sum_probs=49.4
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhh--------------cccCCCC-Cch-----------hhhHhhhhhc-
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------------EQSDDGS-TPQ-----------VDLAHLLAAR- 259 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~ky--------------e~~~~gs-tpq-----------vdl~h~la~r- 259 (337)
+-||+.+ +..+|+....|..++-.|++++..- ..+.|++ +|. ..-+++|.+=
T Consensus 135 ~~eK~~e-lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG 213 (302)
T PF09738_consen 135 YREKIRE-LERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAG 213 (302)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccC
Confidence 3445555 4777777777888888888888544 1222222 111 2446666666
Q ss_pred hh----HHhhhHHHHHhHHHHHHHHHhhhHHhHHH
Q 019657 260 DQ----ELRTLSAEMNQLQSELRLARSFVAEREAE 290 (337)
Q Consensus 260 ~q----elRa~~Ae~~q~~~el~~ar~li~er~~e 290 (337)
++ -||-+.-|.+.+.+|++-.+.-+.++.++
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 23577777777777777776666665443
No 108
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=32.02 E-value=2.6e+02 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=20.7
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (337)
.+++.+.+++++.+.+++..+.-|.++++.|-++.
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~ 53 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLL 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555666666666666666666666666654443
No 109
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=32.01 E-value=4.4e+02 Score=26.83 Aligned_cols=69 Identities=14% Similarity=0.328 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHHHH
Q 019657 79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHIS-ILSISTLLRIIMLIEAI 157 (337)
Q Consensus 79 v~LWllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lkRlPl~IvSlGna~LLLI~~~~~~~~-~Ls~~~ilriil~lElv 157 (337)
+.+.++.|++-..++..+.|.+-+ .-..+.|..+.++|+.....|-|+ .+.+..+.++ -++
T Consensus 124 ~~~~i~IG~l~~~~~~~~~k~~~~--------------~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~i----tli 185 (367)
T PF09971_consen 124 IQFFIIIGFLALILKRIYKKIKFN--------------IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQI----TLI 185 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHH----HHH
Confidence 346667778888888887777622 345667777777777777788884 7776665522 234
Q ss_pred HHHHHHHH
Q 019657 158 CAASFMSV 165 (337)
Q Consensus 158 ~~l~~li~ 165 (337)
..+|++++
T Consensus 186 ~LAPf~ii 193 (367)
T PF09971_consen 186 FLAPFFII 193 (367)
T ss_pred HHHHHHHH
Confidence 44555544
No 110
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=31.81 E-value=30 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=25.7
Q ss_pred hhccCcccCccCc------ccchhhHHHHHHHHHHHHH
Q 019657 24 ILHEAPLLGHRKS------HSIFGSVVYCFVLAGYAIL 55 (337)
Q Consensus 24 ~~~e~p~~~~r~~------~~~~g~~~y~~lL~~~A~~ 55 (337)
.+--.|-+.||.. ||++|..++.|+|-+|++.
T Consensus 40 ~af~~pa~~~r~QIr~YVvrSavGf~fw~ivLsaW~~~ 77 (101)
T KOG3402|consen 40 VAFHSPAFPHRRQIRNYVVRSAVGFSFWTIVLSAWALT 77 (101)
T ss_pred HHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888753 8999999999999999875
No 111
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=31.21 E-value=1.8e+02 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHhhcc
Q 019657 122 TAYGTAAMLLVIVWRPHI 139 (337)
Q Consensus 122 vSlGna~LLLI~~~~~~~ 139 (337)
+++|-+++|.+.+.....
T Consensus 27 v~l~it~lL~~~~~~~~~ 44 (237)
T PF02932_consen 27 VTLGITTLLAMTVFLLMV 44 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhhh
Confidence 567777777776655444
No 112
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=31.20 E-value=1.8e+02 Score=26.85 Aligned_cols=22 Identities=0% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 019657 154 IEAICAASFMSVYIGYVHQYNS 175 (337)
Q Consensus 154 lElv~~l~~li~YIvkV~rFNk 175 (337)
+=.++++|..++|++.+..|.+
T Consensus 144 ~~t~i~~~~~li~~~~~~~~wr 165 (175)
T PF07856_consen 144 AITAILVPVLLIFVVFIQHFWR 165 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777766654
No 113
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=31.07 E-value=84 Score=29.23 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.0
Q ss_pred CccCcccchhhHHHHHH--HHHHHHHHhhhhhhcccc-c-ccchhHHH--HHHHHHHHHHH
Q 019657 32 GHRKSHSIFGSVVYCFV--LAGYAILAAGTTWIFHPI-H-YLIPPLLC--SCGVILLALTG 86 (337)
Q Consensus 32 ~~r~~~~~~g~~~y~~l--L~~~A~~~~~~~wi~~~~-~-~~~~~lL~--~~~v~LWllt~ 86 (337)
=+||-++...++++.+. .+||.+-.+..+|++..+ | ...|..+. ..-+.||+...
T Consensus 132 l~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~ 192 (194)
T PF11833_consen 132 LNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSL 192 (194)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36788888888888765 779999999999997744 2 34444444 33467777654
No 114
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=31.06 E-value=2.2e+02 Score=23.72 Aligned_cols=69 Identities=29% Similarity=0.390 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHhhh-hcccCCC------CCchhhhHhhhhhchhHHhhhHHHHHhHHHHHH--HHHhhhHHhHHHHHH
Q 019657 225 LSEEILRLQECLSK-YEQSDDG------STPQVDLAHLLAARDQELRTLSAEMNQLQSELR--LARSFVAEREAEVLR 293 (337)
Q Consensus 225 LSkrIL~Lq~~l~k-ye~~~~g------stpqvdl~h~la~r~qelRa~~Ae~~q~~~el~--~ar~li~er~~e~~~ 293 (337)
|=++++.+|+++.. |.+-++| ++|--.--.+...=.++..++|.|+..++++|+ ..|..+++-=.++|.
T Consensus 4 Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~ 81 (97)
T PF14966_consen 4 LLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQE 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 45677777776542 3332221 112222234444445677777777777777777 777777766666664
No 115
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=31.01 E-value=60 Score=28.50 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=46.2
Q ss_pred hhhhccCcccCccCcccchhhH-HHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019657 22 LDILHEAPLLGHRKSHSIFGSV-VYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIR 100 (337)
Q Consensus 22 ~d~~~e~p~~~~r~~~~~~g~~-~y~~lL~~~A~~~~~~~wi~~~~~~~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlR 100 (337)
.+++.+. |..|.....=.= +-|.+-++.|+++...++ ..|+|...+ ++..|=++.+++.+++.-|..+..+..-
T Consensus 11 ~~~l~~~---gy~e~~~l~d~kL~lg~~a~~iA~~a~~~d~-~~~f~~s~~-~~~~~v~~YfiLs~il~~~~~~~ek~~~ 85 (162)
T PF06703_consen 11 PEYLTEL---GYKESHTLTDIKLALGYLAVIIAGFAFFYDY-KYPFPESKP-YLIICVILYFILSGILTLYSYFVEKDIF 85 (162)
T ss_pred HHHHhhC---CceeEEEEEcHHHHHHHHHHHHHHHHHHhhh-cCCCCccHH-HHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 4455555 777776654332 112222333333333333 347777765 8888999999999999988887654443
Q ss_pred hhh
Q 019657 101 LQG 103 (337)
Q Consensus 101 l~G 103 (337)
..|
T Consensus 86 ~~g 88 (162)
T PF06703_consen 86 YVG 88 (162)
T ss_pred EEE
Confidence 333
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.74 E-value=3.7e+02 Score=30.58 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh------hhHhhhhhchh------HHhhhHHHHHhHHH
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV------DLAHLLAARDQ------ELRTLSAEMNQLQS 275 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv------dl~h~la~r~q------elRa~~Ae~~q~~~ 275 (337)
++.|-..++-+.+-|+.|.+++=.....+.---+ .++-|-| |++.+.++++. -+|.+-.+.+.+.+
T Consensus 100 Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 100 LANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred HhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh-----------------------------hHHhHHHHHHHHhccHH---HHHHHHHhhhccHHHHHHHHHhh
Q 019657 276 ELRLARSF-----------------------------VAEREAEVLRVRNTNNQ---LERALEVERMSNIELQKKISTRR 323 (337)
Q Consensus 276 el~~ar~l-----------------------------i~er~~e~~~~r~~n~q---le~ale~er~~~~~~~~~~~~~r 323 (337)
||..||-. +++++.=.+.++..-+| ++++=|--+.-+-.|+.++..+|
T Consensus 178 eL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 178 ELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred hcCCCCCccccc
Q 019657 324 NQHGPAESNEHD 335 (337)
Q Consensus 324 ~~~~~~~~~~~~ 335 (337)
.++..+++.-+|
T Consensus 258 ~~~~~~~~~mrd 269 (916)
T KOG0249|consen 258 RSSLEKEQELRD 269 (916)
T ss_pred HHHHhhhhhhcc
No 117
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.63 E-value=2.3e+02 Score=30.13 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 019657 228 EILRLQECL 236 (337)
Q Consensus 228 rIL~Lq~~l 236 (337)
++-...+++
T Consensus 44 ~~~~~~~~~ 52 (475)
T PRK10361 44 ELSAAKQQI 52 (475)
T ss_pred HHHHHHHHH
Confidence 444444444
No 118
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=29.63 E-value=4.2e+02 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019657 143 SISTLLRIIMLIEAICAASFMSVYIGYVHQY 173 (337)
Q Consensus 143 s~~~ilriil~lElv~~l~~li~YIvkV~rF 173 (337)
+...+..+.+..=+++.+.++-.|+.+.|+-
T Consensus 143 ~~~~~~~i~~l~~l~~ll~~le~Y~~RLR~~ 173 (191)
T PF07782_consen 143 DYSVYIQIGLLYLLLWLLVLLEPYALRLRRV 173 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554677777778888888999998874
No 119
>PLN03188 kinesin-12 family protein; Provisional
Probab=29.32 E-value=2.7e+02 Score=33.21 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=52.8
Q ss_pred hhHhHHHHHHHH----------HHHhHHhhH----HHHHHHHHhhhhcccCCCCCchhhh--Hhhhhhc-hh--------
Q 019657 207 LSDEQMALLQYQ----------RENLHFLSE----EILRLQECLSKYEQSDDGSTPQVDL--AHLLAAR-DQ-------- 261 (337)
Q Consensus 207 LlEKQADLIrYL----------kdhNa~LSk----rIL~Lq~~l~kye~~~~gstpqvdl--~h~la~r-~q-------- 261 (337)
+-.|||+=|.-| ++.|+..++ +|++| ++..||+-|--|. +.++.-. +.
T Consensus 885 ~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l-------~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~ 957 (1320)
T PLN03188 885 FCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRL-------ESLMDGVLSKEDFLEEELASLMHEHKLLKEKYE 957 (1320)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHH-------hhhcccccchhhhhhhhhhhhhhhHHHHHHHhh
Confidence 566888877653 244666665 34444 4556888776654 1111111 11
Q ss_pred ---HHhhhHHHHHhHHHHHHHHHhhh--HHhH---HHHHHHHh
Q 019657 262 ---ELRTLSAEMNQLQSELRLARSFV--AERE---AEVLRVRN 296 (337)
Q Consensus 262 ---elRa~~Ae~~q~~~el~~ar~li--~er~---~e~~~~r~ 296 (337)
|+=...-|+.++|.|+...|-.+ +||+ .|||.+|+
T Consensus 958 ~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~ 1000 (1320)
T PLN03188 958 NHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRS 1000 (1320)
T ss_pred cChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 33234558899999999999988 5887 67999986
No 120
>PRK13411 molecular chaperone DnaK; Provisional
Probab=29.03 E-value=1.8e+02 Score=31.26 Aligned_cols=68 Identities=28% Similarity=0.221 Sum_probs=50.5
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhHH-----hHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 257 AARDQELRTLSAEMNQLQSELRLARSFVAE-----REAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~e-----r~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
+..|++.|.....+|++.+-+..+|..+.+ -+.|-..+...=+++|.+|+..-.+.-++++++.+++.
T Consensus 518 ~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~ 590 (653)
T PRK13411 518 AEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQ 590 (653)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 445556667777889999999999999975 45556677777777888888744445778888888876
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.94 E-value=1.9e+02 Score=31.41 Aligned_cols=56 Identities=30% Similarity=0.399 Sum_probs=40.9
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHH
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKIS 320 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~ 320 (337)
.-..|++.++.++...++-|.+-+.++..+...-.|++.-++..+..+-++.+++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777766655
No 122
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=28.75 E-value=2.6e+02 Score=25.97 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=35.9
Q ss_pred cccchhhHHHHHHHHHHHHHHh-hhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhh
Q 019657 36 SHSIFGSVVYCFVLAGYAILAA-GTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQV-------------QKIRL 101 (337)
Q Consensus 36 ~~~~~g~~~y~~lL~~~A~~~~-~~~wi~~~~~~~~~~lL~~~~v~LWllt~l~d~yv~~qH-------------~KlRl 101 (337)
+|-.+|.++--+.|+-..+..+ ..||+ .+...+.+|+=+ +.+++|-++-..- ..-++
T Consensus 73 sR~~i~e~fmP~alv~lv~~~v~~~~~~-----~~~~~~~~~~~~----~~~iid~~~l~r~vkk~v~~kFp~~~~~~~g 143 (170)
T PF11241_consen 73 SRRNIGEFFMPVALVLLVLSFVVPSPQV-----QLYVTLAMYVLL----LLVIIDGVILGRRVKKRVAEKFPDTTESGRG 143 (170)
T ss_pred cccchHHHHHHHHHHHHHHHHHcccHHH-----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCcCCCcc
Confidence 4667888865555554444444 23333 333444444333 3444555443211 23567
Q ss_pred hhHHHHHHHhh
Q 019657 102 QGYYSFSQKLK 112 (337)
Q Consensus 102 ~GYl~FYr~Tr 112 (337)
-|+|.|.|.+.
T Consensus 144 l~~Ya~~Ra~q 154 (170)
T PF11241_consen 144 LGWYAFMRAMQ 154 (170)
T ss_pred hhhHHHHHHhc
Confidence 78888888764
No 123
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.31 E-value=2.1e+02 Score=25.18 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=39.1
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhh--HHhHHHHHHHHhccHHHHHHHHHhh
Q 019657 256 LAARDQELRTLSAEMNQLQSELRLARSFV--AEREAEVLRVRNTNNQLERALEVER 309 (337)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li--~er~~e~~~~r~~n~qle~ale~er 309 (337)
+..-..|+..+..+...+.+||+.-.+.+ +|....|..+...+.+++-=|+.=|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777788888888887777766 6788888888888888766665433
No 124
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=28.30 E-value=1.2e+02 Score=27.97 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=22.1
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHH-HHHHHhhhhcc
Q 019657 207 LSDEQMALLQYQRENLHFLSEEIL-RLQECLSKYEQ 241 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL-~Lq~~l~kye~ 241 (337)
+++.|..+-.-++.....+..+++ -|+..+..+.+
T Consensus 63 ~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k 98 (219)
T PF08397_consen 63 ISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKK 98 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777666666666666666655 56666644444
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.24 E-value=2.3e+02 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhh
Q 019657 276 ELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRR 323 (337)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r 323 (337)
||......|.++..++..++..-.+++-.+|+-.-.-.+++.+|.++.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334443333344444444444455555555543
No 126
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=28.22 E-value=5.6e+02 Score=24.80 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657 243 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (337)
Q Consensus 243 ~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (337)
+.|..++.|++..- .++....+++++.+.++..++.-+++-+....++
T Consensus 145 ~~g~vS~~~~~~a~----~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~ 192 (346)
T PRK10476 145 AKGYVSAQQVDQAR----TAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQR 192 (346)
T ss_pred HCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 45777777765432 2444555666666667666666555444333333
No 127
>PHA02246 hypothetical protein
Probab=28.18 E-value=54 Score=30.59 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHhhcccccchhhhhHHHHHHHHHHHHhh-cc------c-----cccHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 019657 106 SFSQKLKHIVRLPFAITAYGTAAMLLVIVWRP-HI------S-----ILSISTLL--RIIMLIEAICAASFMSVYIGYVH 171 (337)
Q Consensus 106 ~FYr~Tr~lkRlPl~IvSlGna~LLLI~~~~~-~~------~-----~Ls~~~il--riil~lElv~~l~~li~YIvkV~ 171 (337)
.||.-.+- -...|+|+|.|--..|-+.|..- .| + .+|+-+++ -..-.-|.+.....+..|+-++.
T Consensus 51 SfyNlL~T-~~~~fqi~svg~nl~lgivcLlv~~~rkkd~f~~~fiiifSLllfll~~~~evtQtVat~tIiLaYi~QII 129 (192)
T PHA02246 51 SFYNLLLT-DASVFQIVSVGLNLTLGIVCLLVASYRKKDYFSIPFIIVFSLLLFLLSDFTALTQTVATITIILAYVTQIT 129 (192)
T ss_pred HHHHHHhc-CCceEEEeeeehhhhhhhhheeeehhhccccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45544433 34478999999888877776632 11 1 12221111 00123467778888899999999
Q ss_pred HhcCCCCCCchhhcccC
Q 019657 172 QYNSLNSQPDVMKSLYS 188 (337)
Q Consensus 172 rFNk~kp~PDVl~ee~s 188 (337)
+|=|.|..-|.-...|.
T Consensus 130 qfyKTK~SEg~n~~l~l 146 (192)
T PHA02246 130 TFYKTKSAEGTNRFLFL 146 (192)
T ss_pred HHhhhcccCCCChhHHH
Confidence 99999999988877665
No 128
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.14 E-value=73 Score=34.42 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCC
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGS 246 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gs 246 (337)
+..|.|-|+=||+-|..+-+|+=.+..+|.+|++....+
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~~~~ 410 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREEAQRA 410 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 667999999999999999999999999999999974333
No 129
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=28.11 E-value=1.3e+02 Score=27.09 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhh
Q 019657 231 RLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF 283 (337)
Q Consensus 231 ~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l 283 (337)
+++....+|+.--.|++++ |++.++...-++++.+..+.++++.+++.....
T Consensus 24 kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEK 75 (151)
T ss_pred HHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667666677666 899999988888888888888777777665543
No 130
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.03 E-value=2.3e+02 Score=28.61 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCCCchhhcccCCCCCCCCCCCccccCCCc-hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 164 SVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGR-LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 164 i~YIvkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~-LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
=.|=.|+.|-|..- ++.- .+.+-+.-|-+. +.| ++||+++...+-+|.--+...++||++.
T Consensus 164 D~yk~K~~RLN~EL----------n~~L---~g~~~rivDIDaLi~E-----NRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 164 DAYKCKAHRLNHEL----------NYIL---NGDENRIVDIDALIME-----NRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHH----------HHHh---CCCCCCcccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999988632 1110 111112224344 555 7999999999999999999999999987
Q ss_pred CC----------C---CC--chh----hhHhhhhhchhH--HhhhHHHHHhHHHHHHHHHhh---hHHhHHHHHHHHhcc
Q 019657 243 DD----------G---ST--PQV----DLAHLLAARDQE--LRTLSAEMNQLQSELRLARSF---VAEREAEVLRVRNTN 298 (337)
Q Consensus 243 ~~----------g---st--pqv----dl~h~la~r~qe--lRa~~Ae~~q~~~el~~ar~l---i~er~~e~~~~r~~n 298 (337)
-+ | +. -+| .+-.+|..-.-+ +.+-++-..-+++ +|=+| |-++.=.++|-|.+|
T Consensus 226 le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLks---l~~aLle~indK~~al~Hqr~tN 302 (319)
T PF09789_consen 226 LERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKS---LATALLETINDKNLALQHQRKTN 302 (319)
T ss_pred HHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHH---HHHHHHHHhhhHHHHHHHHHHHH
Confidence 44 2 11 112 455555443322 2222222222221 23333 457888999999999
Q ss_pred HHH
Q 019657 299 NQL 301 (337)
Q Consensus 299 ~ql 301 (337)
.=|
T Consensus 303 kIL 305 (319)
T PF09789_consen 303 KIL 305 (319)
T ss_pred HHH
Confidence 763
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.99 E-value=3.6e+02 Score=28.93 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 231 RLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 231 ~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (337)
+|...+..|.+....+...-++..-++.-+++++.+..+...+..++......+++-+.++..++
T Consensus 186 ~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 186 RLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454544443322222222333333333344444444444444444444444444444444333
No 132
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=27.51 E-value=4.8e+02 Score=23.83 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=30.9
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH-------HHHHHHHhh
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ-------LERALEVER 309 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q-------le~ale~er 309 (337)
+++.+.++..++++.+..+...|+.....|.+.+..-+- |.+++|+.+
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 556777777777777777777777777776665443332 555555543
No 133
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.15 E-value=60 Score=28.74 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.0
Q ss_pred hHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 208 lEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
=|+|..+|.|+-.++-.+|++ ..||.+|+.-...
T Consensus 9 KerQreIIsyl~n~dl~~~~~-k~LqkeLn~Lm~~ 42 (126)
T PF10654_consen 9 KERQREIISYLVNNDLSFSKR-KELQKELNQLMNE 42 (126)
T ss_pred HHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHhc
Confidence 389999999999999999875 5788888766544
No 134
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=27.09 E-value=41 Score=28.36 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=18.1
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 019657 36 SHSIFGSVVYCFVLAGYAILA 56 (337)
Q Consensus 36 ~~~~~g~~~y~~lL~~~A~~~ 56 (337)
.+|.+|.+++.++|++|+++-
T Consensus 53 i~SaiG~~vw~v~l~~W~~~F 73 (94)
T PF10251_consen 53 IRSAIGFLVWTVVLISWILIF 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998764
No 135
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.06 E-value=1.9e+02 Score=30.32 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=45.3
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--------hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhh----h
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--------DLAHLLAARDQELRTLSAEMNQLQSELRLARSF----V 284 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv--------dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l----i 284 (337)
.+++++..|...|-.|..+...-+..-.|..... ...+.+-++|.|++-..-|+.-.+.|+...++. +
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~ 364 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 4457777777766444444433333222211111 122222223666776777776666666655554 5
Q ss_pred HHhHHHHHHHHhc
Q 019657 285 AEREAEVLRVRNT 297 (337)
Q Consensus 285 ~er~~e~~~~r~~ 297 (337)
.+|++|||++|+.
T Consensus 365 ~~ke~E~q~lr~~ 377 (511)
T PF09787_consen 365 KEKESEIQKLRNQ 377 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 6799999999875
No 136
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.88 E-value=4.5e+02 Score=23.29 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh---------hhHhhhhhchhHH
Q 019657 211 QMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV---------DLAHLLAARDQEL 263 (337)
Q Consensus 211 QADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv---------dl~h~la~r~qel 263 (337)
+-+.|.=++--|..|-..+-.++.++.+.+...+|-+.-. .+..-++.|..||
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL 65 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888888889999888888866665322 3444566677766
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.74 E-value=6.5e+02 Score=25.09 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=44.0
Q ss_pred HhhhHHHHHh-HHHHHHHHHhhhHHhHHHHHHHHhccHH-------HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 263 LRTLSAEMNQ-LQSELRLARSFVAEREAEVLRVRNTNNQ-------LERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 263 lRa~~Ae~~q-~~~el~~ar~li~er~~e~~~~r~~n~q-------le~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
||++..|++. =+.||+.+|.-|++-+.+|...+..=.+ ++-.+|+-.-.-.|++.+|.+.+...
T Consensus 191 L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 191 LKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 2568888888888888888766544333 66777777777788888888777643
No 138
>PF14142 YrzO: YrzO-like protein
Probab=26.65 E-value=56 Score=24.21 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.7
Q ss_pred hhHhHHHHHHHHHHHh
Q 019657 207 LSDEQMALLQYQRENL 222 (337)
Q Consensus 207 LlEKQADLIrYLkdhN 222 (337)
=+-|||+||+-|||..
T Consensus 27 ~ikqqaeliqllkel~ 42 (46)
T PF14142_consen 27 KIKQQAELIQLLKELK 42 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999999853
No 139
>PRK14127 cell division protein GpsB; Provisional
Probab=26.60 E-value=1.3e+02 Score=25.90 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred hhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
.+++.-|+.=-++..++.+|...++.|++..+.-|++=.+.+...+..+.+.. +....=.+|.++-|.++.|=.
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~-~~~~~~~tn~DiLKRls~LEk 99 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVAT-TQPSSSATNYDILKRLSNLEK 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-cCCCCCcchHHHHHHHHHHHH
Confidence 35566777666788899999999999999999999988888877665543311 112234688888888877643
No 140
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.15 E-value=4.4e+02 Score=22.94 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=39.2
Q ss_pred hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH---HHHHHHHhhhccHHHHHHHHH
Q 019657 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ---LERALEVERMSNIELQKKIST 321 (337)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q---le~ale~er~~~~~~~~~~~~ 321 (337)
|.++.++|.+-+ ++|=+++++--+|++.++.+ +.+.||.|++--++|+..+++
T Consensus 35 L~kqkd~L~~~l---~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 35 LAKQKDQLRNAL---QSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555443 34556788888888888888 688899999998888877665
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.81 E-value=6.7e+02 Score=25.46 Aligned_cols=85 Identities=26% Similarity=0.349 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHh--------------hhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHH
Q 019657 213 ALLQYQRENLHFLSEEILRLQECL--------------SKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQS 275 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l--------------~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~ 275 (337)
.++.=-|++|..|..++-.|+..+ ++++-...|..+..+. ..|++-++ .+.....|++.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~----~ere~lV~qLEk~~~q~~qLe~ 147 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP----HEREDLVEQLEKLREQIEQLER 147 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888887766666554 4444444444433333 55666444 66777788888
Q ss_pred HHHHHHh----hhHHhHHHHHHHHhccHHH
Q 019657 276 ELRLARS----FVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 276 el~~ar~----li~er~~e~~~~r~~n~ql 301 (337)
+++..=- ++.|||+=--.+.-+|.+|
T Consensus 148 d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 148 DLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776533 4456777666677777774
No 142
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.53 E-value=5.9e+02 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=19.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 216 QYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 216 rYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
.=++++...|.+++=.|..-...|.+-
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y 259 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRY 259 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888887777777665
No 143
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.29 E-value=2.2e+02 Score=27.70 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhH------HhhHHHHHHHHHhhhhcccCCCC-----------CchhhhHhhhhhchhHHhhhHHHHHh
Q 019657 210 EQMALLQYQRENLH------FLSEEILRLQECLSKYEQSDDGS-----------TPQVDLAHLLAARDQELRTLSAEMNQ 272 (337)
Q Consensus 210 KQADLIrYLkdhNa------~LSkrIL~Lq~~l~kye~~~~gs-----------tpqvdl~h~la~r~qelRa~~Ae~~q 272 (337)
-+..+-.|..+|+. +|=.+|-.-+.+|.++.++..-. .+.+|.+.++..=+.|+|.|.+++++
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554 33346666666776665542221 23457788898888899999999887
Q ss_pred HH
Q 019657 273 LQ 274 (337)
Q Consensus 273 ~~ 274 (337)
+|
T Consensus 258 Lq 259 (259)
T PF08657_consen 258 LQ 259 (259)
T ss_pred cC
Confidence 64
No 144
>PRK11281 hypothetical protein; Provisional
Probab=25.29 E-value=9.5e+02 Score=28.32 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHhhhhcccCC-------CCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHH
Q 019657 224 FLSEEILRLQECLSKYEQSDD-------GSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAE 290 (337)
Q Consensus 224 ~LSkrIL~Lq~~l~kye~~~~-------gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e 290 (337)
..-+++=..++++.+.++..+ .+.+..+|+..|+.++++|-+..+.+++..+++...++..++.++.
T Consensus 91 ~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 91 QAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 334455556666666665322 2334457888888888888877777777777666555544444433
No 145
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.25 E-value=8.8e+02 Score=28.60 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhHHhhH--------------------HHHHHHHHhhhhcccCC---CCCchhhhHhhhhhchhHHhhhH
Q 019657 211 QMALLQYQRENLHFLSE--------------------EILRLQECLSKYEQSDD---GSTPQVDLAHLLAARDQELRTLS 267 (337)
Q Consensus 211 QADLIrYLkdhNa~LSk--------------------rIL~Lq~~l~kye~~~~---gstpqvdl~h~la~r~qelRa~~ 267 (337)
|++.++.+++...+|.+ ++-.+++++.+.+.... ++.|.-||+..+.....+|-.+.
T Consensus 43 ~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 43 QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKS 122 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555544 45556666665443321 34556688777777777665555
Q ss_pred HHHHhHHHHHHH
Q 019657 268 AEMNQLQSELRL 279 (337)
Q Consensus 268 Ae~~q~~~el~~ 279 (337)
.+..+.++.++.
T Consensus 123 ~~l~~~~~~~~~ 134 (1109)
T PRK10929 123 RQAQQEQDRARE 134 (1109)
T ss_pred HHHHHHhhhhHH
Confidence 555555555544
No 146
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=2.3e+02 Score=30.18 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=75.6
Q ss_pred chhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhh---HhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 019657 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDL---AHLLAARDQELRTLSAEMNQLQSELRLARS 282 (337)
Q Consensus 206 ~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (337)
++.|-+.-|..-=+..+-.--++..+|.+++..-++..+..++|.|- -|+.--|+ .+-|-++.||+.++.
T Consensus 93 s~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql~~Lkvmhsms~r~-------e~snrl~~eLsrt~t 165 (476)
T KOG4324|consen 93 SLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQLDSLKVMHSMSDRE-------EGSNRLKEELSRTQT 165 (476)
T ss_pred ccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhhhHHHHHhhcchhh-------hhhhhhhHHHHHHHH
Confidence 36677777777777777777789999999999888887776777754 45544443 445667788888999
Q ss_pred hhHHhHHHHHH---HHhccHH--------------------------HHHHHHHhhhccHHHHHHHHHhh
Q 019657 283 FVAEREAEVLR---VRNTNNQ--------------------------LERALEVERMSNIELQKKISTRR 323 (337)
Q Consensus 283 li~er~~e~~~---~r~~n~q--------------------------le~ale~er~~~~~~~~~~~~~r 323 (337)
.++.+|.+..+ ||..=.| .|.-|++-|.+-.-||-++..+.
T Consensus 166 ~la~kd~~~d~lS~i~~~~s~e~~Elt~sLf~Ea~KmV~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk 235 (476)
T KOG4324|consen 166 ELALKDEECDILSGIRAQLSQELEELTASLFEEAHKMVRAANPRQEFIEKQLTESRLKIDVLQAEVNALK 235 (476)
T ss_pred HHhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHHHHHhH
Confidence 99999985433 3333322 35556666666666666665443
No 147
>PF14182 YgaB: YgaB-like protein
Probab=25.08 E-value=2.2e+02 Score=23.62 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhccc
Q 019657 227 EEILRLQECLSKYEQS 242 (337)
Q Consensus 227 krIL~Lq~~l~kye~~ 242 (337)
.++|.||..+-+|...
T Consensus 14 D~LL~LQsElERCqeI 29 (79)
T PF14182_consen 14 DKLLFLQSELERCQEI 29 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888777655
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.03 E-value=4e+02 Score=26.34 Aligned_cols=44 Identities=16% Similarity=-0.068 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhhcc-c----------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 019657 49 LAGYAILAAGTTWIFH-P----------IHYLIPPLLCSCGVILLALTGIFQQYF 92 (337)
Q Consensus 49 L~~~A~~~~~~~wi~~-~----------~~~~~~~lL~~~~v~LWllt~l~d~yv 92 (337)
++..++++++++|+.. | .-+++..+++.+=++++++.+++-+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~ 62 (409)
T TIGR00540 8 FLLLIAGIVAGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGL 62 (409)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566777754 1 234444455544444444444444333
No 149
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=24.72 E-value=4e+02 Score=22.23 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHH
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKI 319 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~ 319 (337)
++-++.+..+|+.++.+.+++-+..=..|+.| --+|+-|++.-.-+
T Consensus 32 ~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R------------AN~RiDN~~~~~~~ 77 (85)
T PRK09973 32 NVQTLNAKIARLEQDMKALRPQIYAAKSEANR------------ANTRLDAQDYFDCL 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhhhhHHHHHHH
Confidence 34455555555555555555544333333322 24677777754433
No 150
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.70 E-value=3e+02 Score=29.93 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=34.5
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH
Q 019657 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (337)
....+++|+..+..+++.+..++....+.++.-..++.++.....+
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788998888888888888888888777777777766655544
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.25 E-value=2.4e+02 Score=27.02 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=37.0
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH
Q 019657 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (337)
+-.+.++.|.+=.+.-.++++|.|++.=|+.|.+-.-+++++..-.+.
T Consensus 46 e~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 46 ERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444556666666778888999999999999999988888887765444
No 152
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=24.24 E-value=1.4e+02 Score=30.87 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIF 88 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~~lL~~~~v~LWllt~l~ 88 (337)
.+|.++-|+++++|+....+- |+ ..+|+++..+..+.|...+..
T Consensus 352 ~~~~~~~~l~~~s~~l~l~gw-wi-----P~ip~ll~l~~~~i~~~~~~~ 395 (400)
T COG4252 352 AVGLALAGLLLISYLLFLAGW-WI-----PLIPPLLALVGSGIWSTLFLK 395 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cc-----cchHHHHHHHHHHHHHHHHHH
Confidence 345556666667777776666 77 557888888888888877655
No 153
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.19 E-value=2.2e+02 Score=27.93 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhh
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERM 310 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~ 310 (337)
|+|.+.++.++|++|.+..-..++-=. .-+-+.++++|+-||.=||
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHH
Confidence 556666777777777666554443211 1112566667775554443
No 154
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=24.18 E-value=3.4e+02 Score=23.36 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHH
Q 019657 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKIST 321 (337)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~ 321 (337)
..+.++++.++..+...|......+++|-.++.++..-|....-+|--|+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 3456777777777777887777777788888888777777776666666665544
No 155
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=23.92 E-value=5.2e+02 Score=24.02 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhhccc------CCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHH
Q 019657 227 EEILRLQECLSKYEQS------DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELR 278 (337)
Q Consensus 227 krIL~Lq~~l~kye~~------~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~ 278 (337)
+++-.++.++.+++.. .....|-.+|.-.|......|-.+.+.+++..+++.
T Consensus 52 ~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~ 109 (240)
T PF12795_consen 52 KEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLI 109 (240)
T ss_pred HHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999998665 123345556766666666666544444444444443
No 156
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.63 E-value=1.8e+02 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHh
Q 019657 213 ALLQYQRENLHFLSEEILRLQECL 236 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l 236 (337)
-.|+||-.-...|+..+-.|++.+
T Consensus 66 l~ieYLl~~q~~L~~~~~~l~~~~ 89 (118)
T PF13815_consen 66 LSIEYLLHCQEYLSSQLEQLEERL 89 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355676666666666665555555
No 157
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.26 E-value=7.9e+02 Score=24.87 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=17.1
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhc
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (337)
.|.||+.-++.--.-+-+++.|-+.|+..+|..
T Consensus 273 ~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 273 QLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345555555555555555555555555555543
No 158
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=23.24 E-value=1.5e+02 Score=26.50 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHhhHHH----HHHHHHhhhhccc----CCCCCchhhhHhhhhhc
Q 019657 211 QMALLQYQRENLHFLSEEI----LRLQECLSKYEQS----DDGSTPQVDLAHLLAAR 259 (337)
Q Consensus 211 QADLIrYLkdhNa~LSkrI----L~Lq~~l~kye~~----~~gstpqvdl~h~la~r 259 (337)
=..+++|+++|...+.++. ..+.+.+++|..+ ..+.+++.|+-|+|..=
T Consensus 29 i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~~~~~~~~~el~~lLltG 85 (210)
T PF12896_consen 29 IQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEKGGEGSLQDELLDLLLTG 85 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhc
Confidence 3468899999999998875 3446667777754 34567788887777653
No 159
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=23.08 E-value=3e+02 Score=29.45 Aligned_cols=93 Identities=28% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh
Q 019657 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (337)
Q Consensus 220 dhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (337)
+|-+.|-++=..|-+.- .+..+|-+.-=-.|.--..|+.+.| +++||+.-+..| |+.|-..+|.
T Consensus 344 EqYadLqEk~~~Ll~~H---r~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~e----------rEkEr~~l~~ 410 (488)
T PF06548_consen 344 EQYADLQEKHNDLLARH---RRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAE----------REKERRFLKD 410 (488)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred ccHHH--------------------------------HHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 297 TNNQL--------------------------------ERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 297 ~n~ql--------------------------------e~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.|.-| +||..+|- -|-.+.|+|.+++...
T Consensus 411 eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eq-e~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 411 ENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQ-ENEKAKKQIEKLKRKH 471 (488)
T ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 160
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=22.95 E-value=6.6e+02 Score=23.89 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=28.5
Q ss_pred hhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 019657 101 LQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRP 137 (337)
Q Consensus 101 l~GYl~FYr~Tr~lkRlPl~IvSlGna~LLLI~~~~~ 137 (337)
++|+..+.+.+---+|+|+-.-=.|+..+-++.++..
T Consensus 117 l~Gf~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~~k~ 153 (201)
T COG5102 117 LLGFRAYLEGLTSKERLPHSSWFFGTTLLTIYVVLKY 153 (201)
T ss_pred HHhHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 4688888888888899998777777777776666654
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.90 E-value=1.3e+03 Score=27.08 Aligned_cols=65 Identities=26% Similarity=0.274 Sum_probs=45.6
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcCC
Q 019657 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQHG 327 (337)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~~ 327 (337)
++++.++.++.+.+...+..-+.+=+.+.+..+...++.+.+|...|..-.+++.++.++-.+..
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556666666666666666666666666777777777777787777777778888888777663
No 162
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.90 E-value=3.2e+02 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=9.7
Q ss_pred HHhhhHHHHHhHHHHHHHHHhh
Q 019657 262 ELRTLSAEMNQLQSELRLARSF 283 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~l 283 (337)
++..+.+++++++.++...+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~r~~~L 93 (322)
T TIGR01730 72 QLAAAEAQLELAQRSFERAERL 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 163
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=22.58 E-value=4.2e+02 Score=23.02 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=49.3
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhc-h-hHHhhhHH------HHHhHHHHHHHHHhhhHHhHH
Q 019657 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAAR-D-QELRTLSA------EMNQLQSELRLARSFVAEREA 289 (337)
Q Consensus 218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r-~-qelRa~~A------e~~q~~~el~~ar~li~er~~ 289 (337)
..++...|..+.-.....++.|.+-..| -++...-+|.+ | .-+||+.+ +..|-.++....-++|+|+..
T Consensus 18 ~~~~t~~Lk~ec~~F~~ki~~F~~iv~~---~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~ 94 (120)
T PF14931_consen 18 KADQTQELKEECKEFVEKISEFQKIVKG---FIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKM 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777666333 33333333333 1 23455543 333444455667789999999
Q ss_pred HHHHHHhccHHH
Q 019657 290 EVLRVRNTNNQL 301 (337)
Q Consensus 290 e~~~~r~~n~ql 301 (337)
|+.|+|..=.-|
T Consensus 95 eLERl~~E~~sL 106 (120)
T PF14931_consen 95 ELERLRSEYESL 106 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999998765544
No 164
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.57 E-value=6.8e+02 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=23.9
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
+-+++..+.+. .+-...|.+++=.|+.+..+++.-
T Consensus 302 Le~tE~nL~rI-~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 302 LAAEQYRLVEM-ARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 555578888888888888777665
No 165
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.53 E-value=3.9e+02 Score=22.78 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=40.6
Q ss_pred hhHHH----HHHHHHHHHHHhhhhhh--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019657 41 GSVVY----CFVLAGYAILAAGTTWI--FHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQ 102 (337)
Q Consensus 41 g~~~y----~~lL~~~A~~~~~~~wi--~~~~~~~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlRl~ 102 (337)
|||-| ++++++|.++-+..+.- |=|.|-...-+..|+-+++-.-..++-+=-+..+.+.|..
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~ 69 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAARDRLRAE 69 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 55544 45566777766655542 3344455555777888888888888887777776666654
No 166
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.46 E-value=6.4e+02 Score=23.62 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=19.5
Q ss_pred hhHHHHHhHHHHHHHHHh-----hhHHhHHHHHHHHhccHH
Q 019657 265 TLSAEMNQLQSELRLARS-----FVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~-----li~er~~e~~~~r~~n~q 300 (337)
.+..-|.+.-.+|..--. +.+||..-+.++|.+.+.
T Consensus 102 ~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 444444444455544333 456677777777666544
No 167
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.26 E-value=4.8e+02 Score=25.85 Aligned_cols=16 Identities=6% Similarity=-0.288 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhhhhcc
Q 019657 49 LAGYAILAAGTTWIFH 64 (337)
Q Consensus 49 L~~~A~~~~~~~wi~~ 64 (337)
++..++.+++++|+..
T Consensus 8 ~~~l~~~~~~~~~~~~ 23 (398)
T PRK10747 8 FVLLIAGIVVGPMIAG 23 (398)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4444445555777743
No 168
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.00 E-value=4.2e+02 Score=29.02 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=44.1
Q ss_pred hhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH
Q 019657 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 250 vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (337)
.+|...|.+-.+=.|.+.+.+++++.++..-+-=++.++.|++.+...|+|
T Consensus 184 ~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 184 MELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 366667777666668999999999999999999999999999999998887
No 169
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=22.00 E-value=1.1e+02 Score=26.95 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=22.4
Q ss_pred CcccCccCccc-----chhhHHHHHHHHHHHHHHh
Q 019657 28 APLLGHRKSHS-----IFGSVVYCFVLAGYAILAA 57 (337)
Q Consensus 28 ~p~~~~r~~~~-----~~g~~~y~~lL~~~A~~~~ 57 (337)
-||||-+.+|- ++|+++-.++|++-+.+.+
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEE
Confidence 59999988875 6788888888776544433
No 170
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.42 E-value=3.2e+02 Score=28.71 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=51.3
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhHH-----hHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 019657 257 AARDQELRTLSAEMNQLQSELRLARSFVAE-----REAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQ 325 (337)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~e-----r~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~ 325 (337)
+..|.+.+.....+|++.+-+-.+|..+.+ -+.|-..++..=+++|..|+.. ...++++++.+++..
T Consensus 514 ~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~--d~~~i~~~~~~l~~~ 585 (595)
T TIGR02350 514 AEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE--DVEEIKAKTEELQQA 585 (595)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 556667777788899999999999999975 3566677777777788888754 556777777777654
No 171
>COG5346 Predicted membrane protein [Function unknown]
Probab=21.41 E-value=2.1e+02 Score=25.69 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhcccCCCCCCCCCCCccccCCCchhHhHHHHHHHHHHHhHHhhHHHHHHHHH
Q 019657 159 AASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQEC 235 (337)
Q Consensus 159 ~l~~li~YIvkV~rFNk~kp~PDVl~ee~s~~~ps~s~~E~Gfrd~g~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~ 235 (337)
=.|-...| .++|..-=||||++.+- ..-+|+ =+|.=+.|-+-=+.|-|..-++.+..|.+
T Consensus 23 ~e~~~n~~---~k~F~~~LPpp~~l~qY-nsI~pn-------------t~~rimaMAekEQahrH~~~~k~~~~q~r 82 (136)
T COG5346 23 NEPDNNFY---RKKFEHILPPPDLLSQY-NSIYPN-------------TLQRIMAMAEKEQAHRHAIDLKNLKIQRR 82 (136)
T ss_pred ccHHHHHH---HHHhcccCCCHHHHHHH-HhhcCC-------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444 46788899999998553 323443 35666777778888999998888888888
No 172
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.37 E-value=3.7e+02 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=21.5
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHH
Q 019657 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (337)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (337)
-..+..|.+|-..|.-.-.++-.||-.+|+.+..-..++|+
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~ 131 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQH 131 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34445555555544444445555666666666555444443
No 173
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.33 E-value=1.6e+02 Score=24.20 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred Cchhhh-HhhhhhchhHHhhhHHHHHhHHHHHHHH
Q 019657 247 TPQVDL-AHLLAARDQELRTLSAEMNQLQSELRLA 280 (337)
Q Consensus 247 tpqvdl-~h~la~r~qelRa~~Ae~~q~~~el~~a 280 (337)
+|..|+ +|+...+.++.-.|.+.++.++.|-..-
T Consensus 65 ~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L 99 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKEREQLNARLQELEEENEAL 99 (109)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 7777777766666666665555554433
No 174
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=21.25 E-value=2.4e+02 Score=21.89 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=18.9
Q ss_pred ccchhhHHHHHHHHHHHHHHhh-hhhh
Q 019657 37 HSIFGSVVYCFVLAGYAILAAG-TTWI 62 (337)
Q Consensus 37 ~~~~g~~~y~~lL~~~A~~~~~-~~wi 62 (337)
|..+|.+.-.+.++-|++++++ +.+.
T Consensus 1 Rk~ig~v~ll~~l~vY~~~a~~l~~~~ 27 (62)
T PF11003_consen 1 RKLIGLVLLLVGLPVYAVLAVTLADWL 27 (62)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHh
Confidence 4457777777888889988887 3444
No 175
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.23 E-value=6.3e+02 Score=25.82 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhh
Q 019657 217 YQRENLHFLSEEILRLQECLSKY 239 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~ky 239 (337)
.+.+....|..++=.+.+.+.++
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 176
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.93 E-value=1.2e+03 Score=26.58 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=33.6
Q ss_pred chhhhhHHHHHHHHHHHHhhcc-----cccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019657 118 PFAITAYGTAAMLLVIVWRPHI-----SILS--ISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNS 178 (337)
Q Consensus 118 Pl~IvSlGna~LLLI~~~~~~~-----~~Ls--~~~ilriil~lElv~~l~~li~YIvkV~rFNk~kp 178 (337)
|...+++-+.+-++=+++.... ..|. +..-+ ++-++-.+..+|++..++.+-++.++...
T Consensus 980 pIl~ttltti~g~lPl~~~~g~~~~~~~pla~~v~~gl-~~s~~~tL~~vP~l~~~~~~~~~~~~~~~ 1046 (1051)
T TIGR00914 980 PVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGI-ITATLLTLFVLPALYRLVHRRRHKGRKEH 1046 (1051)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCChhhhcCceEEEEchH-HHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Confidence 7666665555545544443211 1221 22222 35566677889999888877666665433
No 177
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.75 E-value=8.7e+02 Score=25.96 Aligned_cols=58 Identities=33% Similarity=0.273 Sum_probs=37.6
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHh-----hhHHhHHHHHHHHhccHH------------HHHHHHHhhh
Q 019657 253 AHLLAARDQELRTLSAEMNQLQSELRLARS-----FVAEREAEVLRVRNTNNQ------------LERALEVERM 310 (337)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~-----li~er~~e~~~~r~~n~q------------le~ale~er~ 310 (337)
..-++-+|-||+-|..|..|+..|.-.+++ .-++++.|-.|+|..|.- -|.||+.+|.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~ 121 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRR 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 445677888888888888888766554433 345566666666655543 3667776654
No 178
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=20.68 E-value=5.9e+02 Score=28.57 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcc-cccchhhhhHHHHHHHHHHHHhhcc-----------ccccHHHHHH-
Q 019657 83 ALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHI-VRLPFAITAYGTAAMLLVIVWRPHI-----------SILSISTLLR- 149 (337)
Q Consensus 83 llt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~l-kRlPl~IvSlGna~LLLI~~~~~~~-----------~~Ls~~~ilr- 149 (337)
++.++---|..|-|+ .|.+.+++.+.- ..+.-.|-.+|.++++..++..--| .++.+....=
T Consensus 258 llIgiGidy~vh~~n-----r~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi 332 (727)
T COG1033 258 LLIGIGIDYGVHFHN-----RYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGI 332 (727)
T ss_pred HHhhhhhhHHHHHHH-----HHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344444455555543 477777765222 2233444556666655555443322 2222111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCC
Q 019657 150 IIMLIEAICAASFMSVYIGYVH-QYNSLN 177 (337)
Q Consensus 150 iil~lElv~~l~~li~YIvkV~-rFNk~k 177 (337)
++..+-.+..+|.+++|+-+.+ ++++.|
T Consensus 333 ~la~l~sl~~lp~ll~~~~~~~~~~~~~k 361 (727)
T COG1033 333 ILAFLSSLTVLPALLILIPKGRKKREEKK 361 (727)
T ss_pred HHHHHHHHHHHHHHHHhchHhhhhhhhcc
Confidence 2344555667788899999998 666655
No 179
>PRK12438 hypothetical protein; Provisional
Probab=20.61 E-value=6e+02 Score=29.64 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH--HH--HhhhhhHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 019657 68 YLIPPLLCSCGVILLALTGIFQQYFVYQ--VQ--KIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVI 133 (337)
Q Consensus 68 ~~~~~lL~~~~v~LWllt~l~d~yv~~q--H~--KlRl~GYl~FYr~Tr~lkRlPl~IvSlGna~LLLI~ 133 (337)
..|.++++-+-+++|.+.+.+|+|---. |. .+-+-||.|.+- .+|...+=.+-+++..++
T Consensus 210 r~hL~vl~~~~~ll~A~~ywLdRy~LL~s~~g~~~~~GAgYTDv~a------~LPa~~iL~~ia~i~Av~ 273 (991)
T PRK12438 210 RVQLAVFAGAFVLLKAVAYWLDRYELLSSGRKEPTFTGAGYTDINA------VLPAKLILVAIAVLCAVA 273 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhheecCCCCceEecCChhhhhh------HHHHHHHHHHHHHHHHHH
Confidence 4577788888888888889999995543 33 256999988764 456555444444433333
No 180
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=20.60 E-value=4.3e+02 Score=31.57 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=54.2
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHH--hhhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQEL--RTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qel--Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (337)
-++..+..+..+++.||.++-..... ..+++-+|- .++|++ +-...++.++-.+++.++..+.++.+...-.
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~--r~~~~~eLs----sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~ 819 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISK--RLSLQRELK----SQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGL 819 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH--hhhhHHHhh----hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455556667788888887333222 345554443 667766 4566777777778887777777766544433
Q ss_pred Hhcc----HHHHHHHHHhh
Q 019657 295 RNTN----NQLERALEVER 309 (337)
Q Consensus 295 r~~n----~qle~ale~er 309 (337)
+-.+ .+++-.||+|+
T Consensus 820 ~~~~~~~~k~lq~~leae~ 838 (1317)
T KOG0612|consen 820 NRSAWGQMKELQDQLEAEQ 838 (1317)
T ss_pred cccchhhhHHHHHHHHHHH
Confidence 3322 34888999987
No 181
>PHA03055 Hypothetical protein; Provisional
Probab=20.53 E-value=2.3e+02 Score=23.47 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHhhc---ccccc--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 019657 121 ITAYGTAAMLLVIVWRPH---ISILS--------ISTLLRIIMLIEAICAASFM----SVYIGYVHQ 172 (337)
Q Consensus 121 IvSlGna~LLLI~~~~~~---~~~Ls--------~~~ilriil~lElv~~l~~l----i~YIvkV~r 172 (337)
+.+.|-++|.+++.+.-. +..+. =..-.|++..+|.+..+.++ +.|..+|++
T Consensus 8 ~~~Ig~TlL~llMiisG~ali~k~~~p~r~~~~RS~~~~rVl~~lE~va~lifIPgti~LY~aYvk~ 74 (79)
T PHA03055 8 LTAIGITVLMLLMVISGTAMIVKELNPNDIFTMQSLKFNRAVTIFKYIGLFIYIPGTIILYATYVKS 74 (79)
T ss_pred HHHHHHHHHHHHHHHhccHHHhhhcCccceeeehhhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345677776666654421 11111 12345788888988887665 778888876
No 182
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.49 E-value=8.1e+02 Score=23.95 Aligned_cols=44 Identities=32% Similarity=0.464 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHHh---------------HHhhHHHHHHHHHhhhhcccCCCCCchh
Q 019657 207 LSDEQMALLQYQRENL---------------HFLSEEILRLQECLSKYEQSDDGSTPQV 250 (337)
Q Consensus 207 LlEKQADLIrYLkdhN---------------a~LSkrIL~Lq~~l~kye~~~~gstpqv 250 (337)
+-+-|..|-.|..+|+ ..|..++-.++.++..-...-....|+|
T Consensus 186 l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v 244 (362)
T TIGR01010 186 LNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV 244 (362)
T ss_pred HHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Confidence 5555556666666553 3344455555555554433322226666
No 183
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=1.4e+03 Score=26.68 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=20.4
Q ss_pred HhHHHHHHHHhccHH--------------HHHHHHHhhhccHHHHHHHHHhhhc
Q 019657 286 EREAEVLRVRNTNNQ--------------LERALEVERMSNIELQKKISTRRNQ 325 (337)
Q Consensus 286 er~~e~~~~r~~n~q--------------le~ale~er~~~~~~~~~~~~~r~~ 325 (337)
|.++..+.+-..||| .|.-.+.||..-.|.+.++.++-++
T Consensus 557 E~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 557 ETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556666666 2333444555544444555544443
No 184
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=20.29 E-value=6.2e+02 Score=26.08 Aligned_cols=134 Identities=20% Similarity=0.182 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccchhh
Q 019657 42 SVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAI 121 (337)
Q Consensus 42 ~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lkRlPl~I 121 (337)
+.++.|.+-|||......|.. .+--.+.+.+-...|+..++.-.|+..-.-.---+ |+.|++++|.=|.
T Consensus 151 slif~f~l~~~~~t~~~lp~C-----G~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fq-r~~~~K~lkMSKd----- 219 (349)
T COG4792 151 SLIFWFMLHGYANTFLYLPGC-----GLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQ-RYQILKELKMSKD----- 219 (349)
T ss_pred HHHHHHHHHHHHHHHhhcccc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCHH-----
Confidence 455667777888877776665 33333444455555555554444444432222222 5566666665432
Q ss_pred hhHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCchhhcccCCCCCCCC
Q 019657 122 TAYGTAAMLLVIVWRPHISIL--SISTLLRIIMLIEAICAASFMSVYIGYVHQYNS----LNSQPDVMKSLYSPLQPSSS 195 (337)
Q Consensus 122 vSlGna~LLLI~~~~~~~~~L--s~~~ilriil~lElv~~l~~li~YIvkV~rFNk----~kp~PDVl~ee~s~~~ps~s 195 (337)
-+.-.+.-+ +|..- .|=|+|.. ..++-+|.++.-....|+..
T Consensus 220 ------------EVkRE~Kd~eG~PeiK--------------------skRRq~~~Eiqsgsl~~nVkrStviv~nPThi 267 (349)
T COG4792 220 ------------EVKREYKDMEGDPEIK--------------------SKRRQLHSEIQSGSLANNVKRSTVIVKNPTHI 267 (349)
T ss_pred ------------HHHHHHhcccCCchhh--------------------HHHHHHHHHHhcCChhhccceeeEEEecCceE
Confidence 001111111 12111 13344443 25566777777777888888
Q ss_pred CCCccccCCCc----hhHh----HHHHHHHH
Q 019657 196 LEGLRYHDGGR----LSDE----QMALLQYQ 218 (337)
Q Consensus 196 ~~E~Gfrd~g~----LlEK----QADLIrYL 218 (337)
.-.++|+-|+- ++|| ||..|+-+
T Consensus 268 aI~l~Y~~gETplPlVi~k~~daqA~~i~~i 298 (349)
T COG4792 268 AICLRYKRGETPLPLVIEKGTDAQALQIVKI 298 (349)
T ss_pred EEEEeeccCCCCCCEEEEecCcHHHHHHHHH
Confidence 88888886554 5554 55544443
Done!