Query 019657
Match_columns 337
No_of_seqs 72 out of 74
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 82.7 11 0.00038 36.8 11.7 62 265-326 513-574 (597)
2 3kdq_A Uncharacterized conserv 76.7 5.8 0.0002 34.4 6.7 86 223-312 14-112 (154)
3 2v71_A Nuclear distribution pr 75.6 23 0.0008 31.8 10.5 30 213-242 10-39 (189)
4 3hnw_A Uncharacterized protein 69.1 16 0.00054 31.0 7.5 99 216-326 28-126 (138)
5 2e7s_A RAB guanine nucleotide 62.2 10 0.00035 32.6 5.0 21 308-328 94-114 (135)
6 1t6f_A Geminin; coiled-coil, c 61.8 8.2 0.00028 26.6 3.4 27 268-301 7-33 (37)
7 3i00_A HIP-I, huntingtin-inter 61.6 33 0.0011 28.6 7.9 68 256-326 10-84 (120)
8 2dfs_A Myosin-5A; myosin-V, in 53.3 46 0.0016 36.5 9.4 105 217-324 918-1037(1080)
9 3oja_B Anopheles plasmodium-re 51.5 52 0.0018 32.0 8.7 26 275-300 544-569 (597)
10 2dfs_A Myosin-5A; myosin-V, in 51.2 48 0.0016 36.3 9.1 18 263-280 986-1003(1080)
11 1m1j_A Fibrinogen alpha subuni 50.7 87 0.003 32.0 10.1 103 220-323 58-190 (491)
12 1deq_A Fibrinogen (alpha chain 47.2 65 0.0022 32.0 8.5 23 304-326 173-195 (390)
13 2v4h_A NF-kappa-B essential mo 43.5 51 0.0017 27.5 6.1 37 269-305 25-61 (110)
14 3fpp_A Macrolide-specific effl 42.2 77 0.0026 28.6 7.7 34 265-298 73-106 (341)
15 2ksd_A Aerobic respiration con 41.7 2.8 9.5E-05 35.3 -1.8 22 300-321 93-114 (115)
16 3a7p_A Autophagy protein 16; c 40.7 1.5E+02 0.005 26.0 8.8 15 172-186 15-29 (152)
17 4dk0_A Putative MACA; alpha-ha 38.9 56 0.0019 29.8 6.3 31 266-296 75-105 (369)
18 1v54_K IHQ, cytochrome C oxida 35.9 19 0.00064 26.9 2.1 33 39-71 18-50 (56)
19 1i84_S Smooth muscle myosin he 35.6 84 0.0029 34.4 8.0 26 38-63 656-681 (1184)
20 4etp_A Kinesin-like protein KA 33.1 73 0.0025 31.0 6.4 58 267-324 2-59 (403)
21 3na7_A HP0958; flagellar bioge 31.2 2E+02 0.0067 25.8 8.5 6 229-234 10-15 (256)
22 3m9b_A Proteasome-associated A 31.0 50 0.0017 30.9 4.6 41 284-324 56-96 (251)
23 1zxa_A CGMP-dependent protein 30.4 50 0.0017 25.2 3.7 26 251-276 15-40 (67)
24 2w6b_A RHO guanine nucleotide 29.8 58 0.002 24.3 3.8 33 290-322 18-50 (56)
25 3lay_A Zinc resistance-associa 29.4 2E+02 0.0067 25.2 7.9 65 207-284 68-136 (175)
26 1d7m_A Cortexillin I; coiled-c 29.3 2.3E+02 0.008 23.1 8.4 71 252-322 2-79 (101)
27 2v66_B Nuclear distribution pr 28.3 2.5E+02 0.0086 23.1 8.0 58 264-321 31-88 (111)
28 2eqb_B RAB guanine nucleotide 28.2 64 0.0022 26.3 4.2 21 307-327 73-93 (97)
29 3tnu_B Keratin, type II cytosk 28.1 69 0.0024 26.2 4.5 37 270-306 31-67 (129)
30 2y69_K Cytochrome C oxidase po 27.6 30 0.001 27.5 2.1 33 39-71 42-74 (80)
31 3fga_D Shugoshin-like 1; PP2A, 27.1 69 0.0024 23.1 3.7 32 294-325 8-39 (47)
32 2fxo_A Myosin heavy chain, car 27.1 2.6E+02 0.0087 22.8 8.2 58 262-319 42-106 (129)
33 3nmd_A CGMP dependent protein 27.0 1.4E+02 0.0046 23.2 5.7 48 277-324 21-68 (72)
34 1wt6_A Myotonin-protein kinase 26.9 1.5E+02 0.005 23.5 6.0 36 290-325 32-67 (81)
35 3odu_A C-X-C chemokine recepto 26.9 3.5E+02 0.012 24.6 9.5 43 82-132 136-178 (502)
36 3a7p_A Autophagy protein 16; c 26.3 3.2E+02 0.011 23.8 8.7 44 256-299 63-106 (152)
37 1pl5_A Regulatory protein SIR4 25.9 3E+02 0.01 23.2 8.0 36 266-301 100-135 (142)
38 1i84_S Smooth muscle myosin he 25.5 2.5E+02 0.0086 30.7 9.5 11 104-114 726-736 (1184)
39 3ra3_B P2F; coiled coil domain 25.2 59 0.002 20.8 2.7 23 215-237 2-24 (28)
40 1nkp_A C-MYC, MYC proto-oncoge 25.1 61 0.0021 25.2 3.5 34 291-324 54-87 (88)
41 2f1m_A Acriflavine resistance 25.1 1.8E+02 0.0061 25.3 7.0 25 271-295 63-87 (277)
42 1wle_A Seryl-tRNA synthetase; 24.9 3.3E+02 0.011 27.3 9.7 42 262-303 85-134 (501)
43 1nyh_A Regulatory protein SIR4 24.7 3.3E+02 0.011 23.4 8.2 36 266-301 124-159 (166)
44 3he5_A Synzip1; heterodimeric 23.3 57 0.002 23.2 2.7 19 211-229 29-47 (49)
45 3tnu_A Keratin, type I cytoske 21.7 68 0.0023 26.4 3.3 41 267-307 30-70 (131)
46 3hnw_A Uncharacterized protein 21.7 3E+02 0.01 23.1 7.4 43 260-302 88-130 (138)
47 2xdj_A Uncharacterized protein 21.7 2.9E+02 0.0098 21.5 6.9 46 255-300 14-59 (83)
48 3iv1_A Tumor susceptibility ge 21.6 2E+02 0.0067 22.6 5.7 56 256-325 5-68 (78)
49 3tnu_B Keratin, type II cytosk 21.3 1.9E+02 0.0066 23.5 6.0 31 207-237 23-53 (129)
50 1k8k_E P21, ARP2/3 complex 21 21.1 1.4E+02 0.0048 26.7 5.4 68 164-231 72-146 (178)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.66 E-value=11 Score=36.80 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=48.2
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.+..+......++.....-++++..+.+.++..++++|+.+|..+-.-.|++++.+..+.+.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444556666677777888888888888899999999999999999999888887754
No 2
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=76.72 E-value=5.8 Score=34.44 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHH------------hhhHHhHHH
Q 019657 223 HFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR------------SFVAEREAE 290 (337)
Q Consensus 223 a~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar------------~li~er~~e 290 (337)
+-|.+||-.|..++.+.=+-++|.+|.-|...+++ |+..+..+++.+-..+..+- ..|++||.=
T Consensus 14 adl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~----El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L 89 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILT----ELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDAL 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHH----HHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 45889999999999888888999999999999998 78777888888777777765 457788887
Q ss_pred HHHHHhccHHHHHHHHH-hhhcc
Q 019657 291 VLRVRNTNNQLERALEV-ERMSN 312 (337)
Q Consensus 291 ~~~~r~~n~qle~ale~-er~~~ 312 (337)
-.+++..++-..+|-+. .|-|.
T Consensus 90 ~~~~~~l~~~~~~a~~~~~rys~ 112 (154)
T 3kdq_A 90 LKKRTLYSDLADQLTSRQDRYSR 112 (154)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSST
T ss_pred HHHHHHHHHHHHhccccccccch
Confidence 77777777777776644 35554
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.63 E-value=23 Score=31.78 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~~ 242 (337)
|-|.|-|+--...-.++..|+..+..|..+
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqes 39 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEG 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899988888889999999999998876
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.08 E-value=16 Score=30.99 Aligned_cols=99 Identities=8% Similarity=0.122 Sum_probs=63.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 216 QYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 216 rYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (337)
.||+.=-.++.+++-.+... ..| +..+...++-+.| =-++-|+-+++.+...-+..|++.+.|+..++
T Consensus 28 e~L~~vA~~vd~km~ei~~~-~~~-----~~l~~~r~aVLaA------LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKE-ESY-----RRMSAELRTDMMY------LNIADDYFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHH-----HTSCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCC-----CCCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777888877665422 001 1122222222211 13566777788888888888888899998888
Q ss_pred hccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657 296 NTNNQLERALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 296 ~~n~qle~ale~er~~~~~~~~~~~~~r~~~ 326 (337)
.-.-.+...+|.-+-.+-+|++++..+..+-
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766666666666667777776666543
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.19 E-value=10 Score=32.62 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=13.5
Q ss_pred hhhccHHHHHHHHHhhhcCCC
Q 019657 308 ERMSNIELQKKISTRRNQHGP 328 (337)
Q Consensus 308 er~~~~~~~~~~~~~r~~~~~ 328 (337)
+|.....+.++..+++.+.++
T Consensus 94 ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 94 ARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777666543
No 6
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=61.80 E-value=8.2 Score=26.60 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH
Q 019657 268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql 301 (337)
-|-+++|-| |..||.||.+++..|.+|
T Consensus 7 ~ENekLhk~-------ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 7 KENEKLHKE-------IEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Confidence 356677765 578999999999999986
No 7
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.60 E-value=33 Score=28.58 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=54.1
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhc-------cHHHHHHHHHhhhcC
Q 019657 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMS-------NIELQKKISTRRNQH 326 (337)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~-------~~~~~~~~~~~r~~~ 326 (337)
.+-||..+..|.-|++.+++|+.. +..|-...|.+++.-.++||--|+.-|-. |-.|+.+...+|.+.
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~---l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLEN---MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777788889999999999875 47788889999999999999999887743 566777777776655
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.33 E-value=46 Score=36.49 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh------------hh---HhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 019657 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV------------DL---AHLLAARDQELRTLSAEMNQLQSELRLAR 281 (337)
Q Consensus 217 YLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv------------dl---~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (337)
-+++.|..|-.+|-.||.++..-+.....-.... +| -..+..-+.|..++.+++.+++.|+...+
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777776644333311111110 11 01112223344444455555555555555
Q ss_pred hhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 282 SFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 282 ~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
..+.+-..|-..+...+.++.--|+ |.++++ +|...++|+
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~~~L~-~kv~~L--~~e~~~L~q 1037 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYKHETE-QLVSEL--KEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHH
Confidence 5555444444444444444444444 444443 333344444
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.46 E-value=52 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=11.6
Q ss_pred HHHHHHHhhhHHhHHHHHHHHhccHH
Q 019657 275 SELRLARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 275 ~el~~ar~li~er~~e~~~~r~~n~q 300 (337)
.|...-+..+++....+.+++..|.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44444444444444444444444333
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.23 E-value=48 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=6.9
Q ss_pred HhhhHHHHHhHHHHHHHH
Q 019657 263 LRTLSAEMNQLQSELRLA 280 (337)
Q Consensus 263 lRa~~Ae~~q~~~el~~a 280 (337)
+..+..|++.+..|+..+
T Consensus 986 v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 11
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.65 E-value=87 Score=31.95 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=73.5
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHh-HHHHHHHHh
Q 019657 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAER-EAEVLRVRN 296 (337)
Q Consensus 220 dhNa~LSkrIL~Lq~~l~kye~~~~gstpqv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er-~~e~~~~r~ 296 (337)
+++....++|=.|...|..|.++- -++-++ .+-.++.-|-........-.||+.+||+.=-.-|.+| +..|++||.
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~-~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Irv 136 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKY-KTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKA 136 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999998882 122222 5567777777777777777888888888888888777 556777777
Q ss_pred ccHH----------HHHHHHH-----------------hhhccHHHHHHHHHhh
Q 019657 297 TNNQ----------LERALEV-----------------ERMSNIELQKKISTRR 323 (337)
Q Consensus 297 ~n~q----------le~ale~-----------------er~~~~~~~~~~~~~r 323 (337)
+-+. ||.+.-. ..=++.++||++.++=
T Consensus 137 Lq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~ 190 (491)
T 1m1j_A 137 LQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQAS 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhh
Confidence 6554 5555433 3457888999998873
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.16 E-value=65 Score=32.00 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=15.9
Q ss_pred HHHHhhhccHHHHHHHHHhhhcC
Q 019657 304 ALEVERMSNIELQKKISTRRNQH 326 (337)
Q Consensus 304 ale~er~~~~~~~~~~~~~r~~~ 326 (337)
+++...=++.++||++...+.-.
T Consensus 173 ~~~vD~e~ye~qqKQL~qv~a~~ 195 (390)
T 1deq_A 173 EHKVDLEDYKNQQKQLEQVIAIN 195 (390)
T ss_pred hhhccHHHHHHHHHHHHhhhhhc
Confidence 33444667888999988887643
No 13
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.53 E-value=51 Score=27.50 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHH
Q 019657 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERAL 305 (337)
Q Consensus 269 e~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~al 305 (337)
|+|-|...|..|--.+++++.+|..++..-.|++.++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555543333
No 14
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=42.15 E-value=77 Score=28.56 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=16.8
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhcc
Q 019657 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (337)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (337)
.+.+++.++++++..|++.++.-+.+..|.+.+.
T Consensus 73 ~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 106 (341)
T 3fpp_A 73 EVEATLMELRAQRQQAEAELKLARVTYSRQQRLA 106 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555554445555554443
No 15
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=41.72 E-value=2.8 Score=35.29 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccHHHHHHHHH
Q 019657 300 QLERALEVERMSNIELQKKIST 321 (337)
Q Consensus 300 qle~ale~er~~~~~~~~~~~~ 321 (337)
+||++.|.+...|.+|+|||++
T Consensus 93 ~Le~~r~~d~~ln~~L~~Ni~~ 114 (115)
T 2ksd_A 93 KLEEMRERDLSLNVQLKDNIAQ 114 (115)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555443
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.73 E-value=1.5e+02 Score=25.95 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=0.0
Q ss_pred HhcCCCCCCchhhcc
Q 019657 172 QYNSLNSQPDVMKSL 186 (337)
Q Consensus 172 rFNk~kp~PDVl~ee 186 (337)
+--++.|+.|++...
T Consensus 15 ~~~~~~~~~~~md~~ 29 (152)
T 3a7p_A 15 KEERSNPQTDSMDDL 29 (152)
T ss_dssp ---------------
T ss_pred HHhhcCCcchhHHHH
Confidence 344566777776544
No 17
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.91 E-value=56 Score=29.77 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=12.8
Q ss_pred hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHh
Q 019657 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (337)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (337)
..|++.+++.++..|++.++.-+.+.+|.+.
T Consensus 75 ~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~ 105 (369)
T 4dk0_A 75 RKAALASYQAQLVARKTAYDVALSNYQRLSK 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433344444433
No 18
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=35.92 E-value=19 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~ 71 (337)
++||..||+..-+|.+.-++.-|=+.|+-...|
T Consensus 18 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 50 (56)
T 1v54_K 18 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhhhHhhHhhhheeeceeeccCcccccCc
Confidence 579999999999999999999999998877665
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.59 E-value=84 Score=34.39 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=12.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhc
Q 019657 38 SIFGSVVYCFVLAGYAILAAGTTWIF 63 (337)
Q Consensus 38 ~~~g~~~y~~lL~~~A~~~~~~~wi~ 63 (337)
+++|+-+=-=|-.=-..+--+.||.-
T Consensus 656 ~tv~~~f~~~l~~L~~~l~~t~phfv 681 (1184)
T 1i84_S 656 RTVGQLYKEQLTKLMTTLRNTNPNFV 681 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCce
Confidence 46666533323223334455566643
No 20
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.12 E-value=73 Score=30.95 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
+++++++..|++..+....+.+.+|..+...+.+++.-|..|..-.-.|-.++.++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777777777777778888888888777777766666655555566666777776
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.20 E-value=2e+02 Score=25.81 Aligned_cols=6 Identities=0% Similarity=0.523 Sum_probs=2.4
Q ss_pred HHHHHH
Q 019657 229 ILRLQE 234 (337)
Q Consensus 229 IL~Lq~ 234 (337)
|+.||.
T Consensus 10 L~~LQ~ 15 (256)
T 3na7_A 10 LIEISH 15 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 22
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.03 E-value=50 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred hHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 284 VAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 284 i~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
+.+-++++..+-..|..|..+|..-|-....|++++.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556777788788888888888888888888888888775
No 23
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.37 E-value=50 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=11.9
Q ss_pred hhHhhhhhchhHHhhhHHHHHhHHHH
Q 019657 251 DLAHLLAARDQELRTLSAEMNQLQSE 276 (337)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~e 276 (337)
++...+..+|--.+.|.+++++-..|
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~e 40 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEE 40 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554333333
No 24
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.84 E-value=58 Score=24.26 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=25.9
Q ss_pred HHHHHHhccHHHHHHHHHhhhccHHHHHHHHHh
Q 019657 290 EVLRVRNTNNQLERALEVERMSNIELQKKISTR 322 (337)
Q Consensus 290 e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~ 322 (337)
+++-++..|.++-++||.|..+--+|-+-+-+.
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999999999998887777665443
No 25
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.41 E-value=2e+02 Score=25.23 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=37.4
Q ss_pred hhHhHHHHHHHHHH----HhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 019657 207 LSDEQMALLQYQRE----NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (337)
Q Consensus 207 LlEKQADLIrYLkd----hNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (337)
|.+.|-+=++=+++ ....|-+++...+.++..--.. .+|+ +..++++..|+..+++++...|.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a---~~~D----------eakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA---SSPD----------TAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCC----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCC----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544433 2334555666666666432222 2222 24568889999999988887765
Q ss_pred hh
Q 019657 283 FV 284 (337)
Q Consensus 283 li 284 (337)
..
T Consensus 135 k~ 136 (175)
T 3lay_A 135 KR 136 (175)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.28 E-value=2.3e+02 Score=23.06 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=44.4
Q ss_pred hHhhhhhchhHHh-------hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHh
Q 019657 252 LAHLLAARDQELR-------TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTR 322 (337)
Q Consensus 252 l~h~la~r~qelR-------a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~ 322 (337)
++.-||.=+|.|- .+....+++.+-++.-|+.=++|..-|.-+-+-=+.-=+-|+.|||-.+||-..+++.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKt 79 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhh
Confidence 3444555555442 4555566777777777777777776554444333333456788999988887766653
No 27
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.29 E-value=2.5e+02 Score=23.15 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=35.0
Q ss_pred hhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHH
Q 019657 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKIST 321 (337)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~ 321 (337)
+....+++-+|.|+...|.-=++=...|..+=..||-|||+--+--.|=.++..|+..
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455667778877776554433333344444456888999866555555566666653
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.18 E-value=64 Score=26.30 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=14.6
Q ss_pred HhhhccHHHHHHHHHhhhcCC
Q 019657 307 VERMSNIELQKKISTRRNQHG 327 (337)
Q Consensus 307 ~er~~~~~~~~~~~~~r~~~~ 327 (337)
.+|+....+.++..+|+.|..
T Consensus 73 ~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 73 DARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356677777778888777653
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.10 E-value=69 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHH
Q 019657 270 MNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALE 306 (337)
Q Consensus 270 ~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale 306 (337)
+...+.|+.--|.-|..-+.||+.++..|..||.+|.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344455555566666666777777777777766653
No 30
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.59 E-value=30 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~ 71 (337)
++||..||+..-+|.++=++.-|=+.|+-..+|
T Consensus 42 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 74 (80)
T 2y69_K 42 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhHHHhhHHHhheecceeecCCcccccCc
Confidence 579999999999999999999999999876665
No 31
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=27.15 E-value=69 Score=23.09 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHhccHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 019657 294 VRNTNNQLERALEVERMSNIELQKKISTRRNQ 325 (337)
Q Consensus 294 ~r~~n~qle~ale~er~~~~~~~~~~~~~r~~ 325 (337)
+-..|..|-.|||+|+-+--|-|.-|..+|..
T Consensus 8 ~Q~NNr~LalALe~Ek~Kvr~Aq~~ILqLkrE 39 (47)
T 3fga_D 8 YQDNNKMLVLALENEKSKVKEAQDIILQLRKE 39 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567779999999999988888888888763
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.12 E-value=2.6e+02 Score=22.82 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH-------HHHHHHhhhccHHHHHHH
Q 019657 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL-------ERALEVERMSNIELQKKI 319 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql-------e~ale~er~~~~~~~~~~ 319 (337)
..+.+.+|+|.++.+|..-+..+++-+--..++-....+| +.-||.+-=.|.+|..+-
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~k 106 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKK 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999888777777776666553 334444444455544433
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.01 E-value=1.4e+02 Score=23.18 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 277 LRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 277 l~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
++--.-++.+|+.||++-=...+.||..|..-.--..+||.++.++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 34
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.95 E-value=1.5e+02 Score=23.53 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 019657 290 EVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQ 325 (337)
Q Consensus 290 e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~ 325 (337)
|+.+||+.|-..+.=|.+-...|.||.-++.+++.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555555566665555555543
No 35
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=26.92 E-value=3.5e+02 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccchhhhhHHHHHHHHH
Q 019657 82 LALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132 (337)
Q Consensus 82 Wllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lkRlPl~IvSlGna~LLLI 132 (337)
.+...-+|||+.-.|-- + |++....++.-..+...|-..+++.
T Consensus 136 ~l~~is~dRy~ai~~P~-~-------~~~~~~~~~~~~~i~~~W~~~~~~~ 178 (502)
T 3odu_A 136 ILAFISLDRYLAIVHAT-N-------SQRPRKLLAEKVVYVGVWIPALLLT 178 (502)
T ss_dssp HHHHHHHHHHHHHHCTT-S-------CHHHHHHHHHTHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHhheeccc-c-------cccccchhHHHHhhhHHHHHHHHHH
Confidence 34445678877655321 1 1222233344456666666555443
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.32 E-value=3.2e+02 Score=23.77 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=28.9
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccH
Q 019657 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (337)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (337)
++.=.++++.|..|+.++..+++-=.-.|.||...++.|+...-
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~ 106 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567777777777777777777777777766666654443
No 37
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=25.94 E-value=3e+02 Score=23.20 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=23.1
Q ss_pred hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH
Q 019657 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql 301 (337)
+.-.+.--..=|.-|||-|.|+|+.|..+-+-++|.
T Consensus 100 lqgdltftkkclenarsqisekdakinklmekdfqv 135 (142)
T 1pl5_A 100 LQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred eccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Confidence 333333444567789999999999999887777764
No 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.48 E-value=2.5e+02 Score=30.69 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.8
Q ss_pred HHHHHHHhhcc
Q 019657 104 YYSFSQKLKHI 114 (337)
Q Consensus 104 Yl~FYr~Tr~l 114 (337)
|-+|.+.-+.+
T Consensus 726 ~~~F~~ry~~L 736 (1184)
T 1i84_S 726 FQEFRQRYEIL 736 (1184)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHh
Confidence 45666554443
No 39
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.15 E-value=59 Score=20.83 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.2
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhh
Q 019657 215 LQYQRENLHFLSEEILRLQECLS 237 (337)
Q Consensus 215 IrYLkdhNa~LSkrIL~Lq~~l~ 237 (337)
|+-||+.|+.|-++|-.|.-+..
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 67799999999999988865543
No 40
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.15 E-value=61 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657 291 VLRVRNTNNQLERALEVERMSNIELQKKISTRRN 324 (337)
Q Consensus 291 ~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~ 324 (337)
|+.+...|..++.-.+.-+-.|..|++++..+++
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444455555666777777777765
No 41
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.06 E-value=1.8e+02 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHhhhHHhHHHHHHHH
Q 019657 271 NQLQSELRLARSFVAEREAEVLRVR 295 (337)
Q Consensus 271 ~q~~~el~~ar~li~er~~e~~~~r 295 (337)
.++++++..|++.++.-..+..|.+
T Consensus 63 ~~a~a~l~~a~a~l~~a~~~~~r~~ 87 (277)
T 2f1m_A 63 DSAKGDLAKAQAAANIAQLTVNRYQ 87 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 42
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.90 E-value=3.3e+02 Score=27.33 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhh--------HHhHHHHHHHHhccHHHHH
Q 019657 262 ELRTLSAEMNQLQSELRLARSFV--------AEREAEVLRVRNTNNQLER 303 (337)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li--------~er~~e~~~~r~~n~qle~ 303 (337)
++.++.||.|++..|+..+..-= ++.++-+++++...+++..
T Consensus 85 ~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 134 (501)
T 1wle_A 85 QIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTL 134 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHH
Confidence 33466666666666665432111 1333446677777777553
No 43
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=24.74 E-value=3.3e+02 Score=23.45 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=23.2
Q ss_pred hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH
Q 019657 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql 301 (337)
+.-.+.--..=|.-|||-|.|+|+.|..+-+-++|.
T Consensus 124 lqgdltftkkclenarsqisekdakinklmekdfqv 159 (166)
T 1nyh_A 124 LQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred eccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 333344444567789999999999999887777764
No 44
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.30 E-value=57 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHhhHHH
Q 019657 211 QMALLQYQRENLHFLSEEI 229 (337)
Q Consensus 211 QADLIrYLkdhNa~LSkrI 229 (337)
..|+|.||....+.|-++|
T Consensus 29 kkdliaylekeianlrkki 47 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3588999988888887776
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.72 E-value=68 Score=26.35 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHH
Q 019657 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEV 307 (337)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~ 307 (337)
+.++...+.|+.-.|.-|..-+.||+.++..|..||.+|..
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.72 E-value=3e+02 Score=23.09 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=17.4
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHH
Q 019657 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLE 302 (337)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle 302 (337)
+.|+=.+--|+..++-++..+...+.+-..++..+...+-+||
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444333333343
No 47
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.68 E-value=2.9e+02 Score=21.50 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=35.0
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH
Q 019657 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (337)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (337)
.+.++.+.+=.+.-.+++++.|++.-|+.|.+=.-++.++..-...
T Consensus 14 ~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 14 ISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555565677888899999999999999988888887654443
No 48
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.64 E-value=2e+02 Score=22.56 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=28.6
Q ss_pred hhhchhHHh-hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH-------HHHHHHHhhhccHHHHHHHHHhhhc
Q 019657 256 LAARDQELR-TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ-------LERALEVERMSNIELQKKISTRRNQ 325 (337)
Q Consensus 256 la~r~qelR-a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q-------le~ale~er~~~~~~~~~~~~~r~~ 325 (337)
+-|=+.-|| .+..+++|-|+|+. .+|.+.+- |+..++.=---..+++|+|..++..
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~--------------sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELN--------------ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443 55556666665554 44444443 4444333222335677777777664
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.30 E-value=1.9e+02 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=14.3
Q ss_pred hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhh
Q 019657 207 LSDEQMALLQYQRENLHFLSEEILRLQECLS 237 (337)
Q Consensus 207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~ 237 (337)
.+.++.|-++.-|.-+..|.+.|=.|+.++.
T Consensus 23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777777777777763
No 50
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=21.13 E-value=1.4e+02 Score=26.72 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=42.8
Q ss_pred HHHHHH-HHHhcCCCCCCchhhcccCCC-CCCCCCCCccccCCCc----hhHhHHHHHH-HHHHHhHHhhHHHHH
Q 019657 164 SVYIGY-VHQYNSLNSQPDVMKSLYSPL-QPSSSLEGLRYHDGGR----LSDEQMALLQ-YQRENLHFLSEEILR 231 (337)
Q Consensus 164 i~YIvk-V~rFNk~kp~PDVl~ee~s~~-~ps~s~~E~Gfrd~g~----LlEKQADLIr-YLkdhNa~LSkrIL~ 231 (337)
++||-. ..|..+....-|+.++.+..+ -.-+.+||-||-=++- =..+.+|++| ||+|==..++.|++.
T Consensus 72 tlyi~eCLkkl~~~~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~e 146 (178)
T 1k8k_E 72 TLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCE 146 (178)
T ss_dssp HHHHHHHHHHHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 455566555567777664442 3445778889875442 2345677776 999988899987763
Done!