Query 019657
Match_columns 337
No_of_seqs 72 out of 74
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019657.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019657hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 47.6 6.8 0.00049 24.3 2.7 26 39-64 2-27 (32)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 38.7 26 0.0019 23.6 5.1 36 203-238 23-58 (61)
3 d1jb0i_ f.23.17.1 (I:) Subunit 20.7 14 0.001 23.9 0.8 20 56-75 7-26 (38)
4 d1v54k_ f.23.5.1 (K:) Mitochon 20.3 25 0.0018 23.9 2.1 33 39-71 13-45 (49)
5 d1oqya1 a.5.2.1 (A:160-200) DN 18.8 14 0.001 23.8 0.5 21 286-306 17-37 (41)
6 d1st6a5 a.24.9.1 (A:489-646) V 18.7 1.3E+02 0.0094 24.1 6.7 46 218-263 49-95 (158)
7 d2ncda_ c.37.1.9 (A:) Kinesin 17.9 44 0.0032 29.3 3.8 39 260-301 2-40 (368)
8 d1am9a_ a.38.1.1 (A:) SREBP-1a 16.3 86 0.0063 21.7 4.4 36 206-241 43-78 (80)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 15.9 60 0.0044 22.8 3.5 13 224-236 20-32 (88)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 14.3 2.2E+02 0.016 20.7 8.2 29 213-241 8-36 (133)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=47.55 E-value=6.8 Score=24.29 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcc
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFH 64 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~ 64 (337)
+.|+++|++..+-|-+.+++..+...
T Consensus 2 ilgavfyivfialffgiavgiifaik 27 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHhhheeeEE
Confidence 57999999999988888777665533
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.74 E-value=26 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCCchhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhh
Q 019657 203 DGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSK 238 (337)
Q Consensus 203 d~g~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~k 238 (337)
+...++++=.|-|++|+..+..|.++...|+.+..+
T Consensus 23 ~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 23 HKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445599999999999999999999999999988754
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=20.67 E-value=14 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=12.7
Q ss_pred HhhhhhhcccccccchhHHH
Q 019657 56 AAGTTWIFHPIHYLIPPLLC 75 (337)
Q Consensus 56 ~~~~~wi~~~~~~~~~~lL~ 75 (337)
+...||||.|+--...|...
T Consensus 7 AsyLPwI~iPvv~wl~p~vv 26 (38)
T d1jb0i_ 7 ASFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTTHHHHHHHHHHTHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHH
Confidence 45789998876554444433
No 4
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.31 E-value=25 Score=23.85 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhcccccccch
Q 019657 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (337)
Q Consensus 39 ~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~~~~ 71 (337)
++||..+|+-.-+|...-++.-|=+.|+-...|
T Consensus 13 L~~Ga~fc~avW~yv~TQ~gI~WnlSPVGrVtP 45 (49)
T d1v54k_ 13 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred Eecccchhhhhhhheeeeeeeeecccccccccc
Confidence 578999999999999999999999988876655
No 5
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.82 E-value=14 Score=23.76 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=16.7
Q ss_pred HhHHHHHHHHhccHHHHHHHH
Q 019657 286 EREAEVLRVRNTNNQLERALE 306 (337)
Q Consensus 286 er~~e~~~~r~~n~qle~ale 306 (337)
.|+.-+..+|.+|+.+|||+|
T Consensus 17 ~~~~a~~AL~~~~~N~e~A~~ 37 (41)
T d1oqya1 17 ERERVVAALRASYNNPHRAVE 37 (41)
T ss_dssp CSHHHHHHHHHSCSSTTHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHH
Confidence 467777888888888888876
No 6
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.70 E-value=1.3e+02 Score=24.12 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh-hhHhhhhhchhHH
Q 019657 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQEL 263 (337)
Q Consensus 218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqv-dl~h~la~r~qel 263 (337)
.|++.-.+-.+|-+|..+|+...+..-|.||+- +++--+..+=++|
T Consensus 49 ~r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL 95 (158)
T d1st6a5 49 YRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDL 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 367777888889999999999999988999986 4443343333333
No 7
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.85 E-value=44 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=29.5
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHH
Q 019657 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQL 301 (337)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ql 301 (337)
.||.+.+.++++|+.+|+..|+.-+-+.+.+ | |.+.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~~ 40 (368)
T d2ncda_ 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME--R-KELHNTV 40 (368)
T ss_dssp CSSSGGGTHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHhHH
Confidence 4678889999999999999998888666544 3 3455554
No 8
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.34 E-value=86 Score=21.71 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=32.3
Q ss_pred chhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 019657 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (337)
Q Consensus 206 ~LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~ 241 (337)
.++++=.+.|.+|++.+..|.++...|+..+.+.+.
T Consensus 43 ~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~ 78 (80)
T d1am9a_ 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 499999999999999999999999999988876543
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.91 E-value=60 Score=22.82 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.6
Q ss_pred HhhHHHHHHHHHh
Q 019657 224 FLSEEILRLQECL 236 (337)
Q Consensus 224 ~LSkrIL~Lq~~l 236 (337)
.++..+-.|...+
T Consensus 20 ~in~~f~~Lr~ll 32 (88)
T d1nkpa_ 20 ELKRSFFALRDQI 32 (88)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 3444555555555
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.34 E-value=2.2e+02 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 019657 213 ALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (337)
Q Consensus 213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~ 241 (337)
..++.+++....|..++-+++...++|+.
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~ 36 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888887774
Done!