Query 019659
Match_columns 337
No_of_seqs 296 out of 1171
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2997 F-box protein FBX9 [Ge 100.0 1.5E-64 3.2E-69 481.9 11.7 286 6-311 45-362 (366)
2 PF12937 F-box-like: F-box-lik 99.3 1.8E-12 3.9E-17 91.7 2.9 46 61-106 2-47 (47)
3 PF00646 F-box: F-box domain; 98.7 5.6E-09 1.2E-13 73.5 1.5 46 60-105 3-48 (48)
4 smart00256 FBOX A Receptor for 98.6 2.5E-08 5.5E-13 67.2 2.1 40 63-102 1-40 (41)
5 KOG3926 F-box proteins [Amino 97.9 8.3E-06 1.8E-10 78.1 3.2 78 57-135 199-277 (332)
6 KOG2120 SCF ubiquitin ligase, 97.8 6.6E-06 1.4E-10 80.4 0.9 52 55-106 93-144 (419)
7 KOG0281 Beta-TrCP (transducin 96.7 0.00099 2.2E-08 66.1 2.7 48 60-107 75-126 (499)
8 PF06881 Elongin_A: RNA polyme 96.4 0.0029 6.3E-08 52.7 3.2 69 60-135 4-72 (109)
9 KOG0274 Cdc4 and related F-box 95.4 0.0056 1.2E-07 64.2 1.0 48 60-107 108-155 (537)
10 KOG4341 F-box protein containi 95.2 0.0063 1.4E-07 61.9 0.6 51 60-110 72-122 (483)
11 KOG4408 Putative Mg2+ and Co2+ 94.5 0.006 1.3E-07 60.3 -1.7 55 58-112 6-60 (386)
12 PF13013 F-box-like_2: F-box-l 87.8 0.42 9E-06 40.3 2.5 34 59-92 21-54 (109)
13 PLN03215 ascorbic acid mannose 86.3 0.44 9.4E-06 48.2 2.1 37 60-96 4-41 (373)
14 KOG2997 F-box protein FBX9 [Ge 67.2 6.8 0.00015 39.2 3.9 30 77-107 148-187 (366)
15 PHA02123 hypothetical protein 51.2 11 0.00024 32.1 2.0 43 135-188 95-139 (146)
16 PF09372 PRANC: PRANC domain; 41.9 14 0.00031 29.6 1.3 24 60-83 72-95 (97)
17 PF13924 Lipocalin_5: Lipocali 31.3 3.3E+02 0.0072 23.2 10.4 57 161-223 25-89 (140)
18 PF11794 HpaB_N: 4-hydroxyphen 25.5 32 0.0007 33.3 1.0 13 233-245 206-218 (264)
19 TIGR03067 Planc_TIGR03067 Plan 24.8 3.3E+02 0.0071 22.5 6.8 66 167-233 35-106 (107)
20 PHA03100 ankyrin repeat protei 20.5 49 0.0011 33.2 1.2 28 61-88 449-476 (480)
No 1
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=100.00 E-value=1.5e-64 Score=481.94 Aligned_cols=286 Identities=34% Similarity=0.542 Sum_probs=259.6
Q ss_pred cccccccchhhhc-cccccceecccccccccCCccccCCC---CCCCCC-CCCCC--cchhc-ccCCHHHHHHHcc----
Q 019659 6 AMTIPAELESSLR-LKTVHHFVTQRPWLDLYGINVRPVAP---FGSVSR-KPYVD--TALIH-RCLPDELLFEVFA---- 73 (337)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~r~wL~~~gl~i~~~~p---~~~~~~-~~~~~--pc~iL-~~LPdEILl~Ils---- 73 (337)
|++|+|++|+.-+ +++++++.++++||++.+-..+++++ |+.... ++.++ ||+++ +.||+|||+.||.
T Consensus 45 AlqI~~diEs~~r~l~~~~~~~~k~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~ 124 (366)
T KOG2997|consen 45 ALQIVPDIESKYRYLRSPQGDGVKNSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVS 124 (366)
T ss_pred hhcCCchHHHHHHHHhhhhhcccCcchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHh
Confidence 8999999999988 99999999999999999999999998 766655 55555 99987 8999999999995
Q ss_pred -CCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCccccCcEEeeccceee
Q 019659 74 -RMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIR 152 (337)
Q Consensus 74 -~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~RPrIRf~G~YIS~v~YiR 152 (337)
.||.+||.++|+|||+|+.+|+++++||..|.+.|+......+.++.++.+.++||+||++|||+||||||||+++|+|
T Consensus 125 ~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR 204 (366)
T KOG2997|consen 125 SLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIR 204 (366)
T ss_pred hhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEee
Confidence 5789999999999999999999999999999999998776666666667888999999999999999999999999999
Q ss_pred CCcccc-cccCceeEEEeeeeeeEcCCCceEEeecCccccceeecccccccCCCceEEEEEEEeCCEEEEEEecCC----
Q 019659 153 AGVAEW-KITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPG---- 227 (337)
Q Consensus 153 ~G~~~~-~~~~Pvh~VtYYRYLRF~pDGt~l~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~g---- 227 (337)
+|++++ +|++|||+||||||+||||||+||+++|++||++||++|+.++.+...++.|+|+++++.|++++..++
T Consensus 205 ~G~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~p 284 (366)
T KOG2997|consen 205 QGENSLDSFYRPVHLVEYYRYIRFYPDGHVLMLTSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTP 284 (366)
T ss_pred cCchhhhhhcCcceeeEEEEEEEecCCCcEEEEeCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCc
Confidence 999999 999999999999999999999999999999999999999999988899999999999988888776321
Q ss_pred --------------CcceEEEEEEEEecCCCCCcceeEEeEeEEecCCCCCCCCCCCcccccccccccCCCCCCCCCccc
Q 019659 228 --------------LRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVS 293 (337)
Q Consensus 228 --------------~~~~~f~~~L~lr~~~~g~~nkL~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (337)
...++|.++|+|++++..+.|+|+|.++. +++|+++|++.++.|++.
T Consensus 285 s~~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~ 345 (366)
T KOG2997|consen 285 SDYKYRRGRRVPVQEASQTFLVELQLCGSGHRRFNKLKWIHHS-------------------ITYKSDKETAVSEFPLTK 345 (366)
T ss_pred hhhhhhcccccccccccceeEEEEEEecccchhhhhheeeeee-------------------eeEeecccccccCCcccc
Confidence 12367899999999999999999998875 247888899999999999
Q ss_pred ccCCCCceeeeecccccc
Q 019659 294 HKRGLTPFVFVPFEEVCD 311 (337)
Q Consensus 294 ~~rg~~~~~fv~~e~~~~ 311 (337)
|++| .-|++||+++++.
T Consensus 346 ~k~~-~~FsrV~Sy~~d~ 362 (366)
T KOG2997|consen 346 MKTP-LFFSRVKSYTADS 362 (366)
T ss_pred ccCc-ceEEEeeeeeccc
Confidence 9999 8899999998863
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.28 E-value=1.8e-12 Score=91.75 Aligned_cols=46 Identities=41% Similarity=0.956 Sum_probs=40.8
Q ss_pred ccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659 61 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (337)
Q Consensus 61 ~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~ 106 (337)
..||+||+.+||++|++.|+.++++|||+|+.++.++.+|+++|.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 5899999999999999999999999999999999999999999864
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.70 E-value=5.6e-09 Score=73.47 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=40.4
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHH
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACL 105 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~ 105 (337)
+..||+|++.+||++|++.|+.++++|||+|+.++.+..+|+..|+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 5789999999999999999999999999999999999999999874
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.58 E-value=2.5e-08 Score=67.16 Aligned_cols=40 Identities=38% Similarity=0.757 Sum_probs=38.6
Q ss_pred CCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHH
Q 019659 63 LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN 102 (337)
Q Consensus 63 LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~ 102 (337)
||+|++.+|+++|++.|+.++++|||+|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=97.88 E-value=8.3e-06 Score=78.08 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=62.5
Q ss_pred chhcccCCHHHHHHHccCC-CcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 019659 57 ALIHRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 135 (337)
Q Consensus 57 c~iL~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~R 135 (337)
.+.+..||.|+++.|+..| |..||..+|++--.++.++++..|||.+|+..|+.-.+.. ..........+||+||..-
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~-~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHT-ILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhhccccchhHHHHHHHH
Confidence 3457899999999999887 7999999999999999999999999999999886533322 1223344447899999864
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=6.6e-06 Score=80.41 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=46.8
Q ss_pred CcchhcccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659 55 DTALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (337)
Q Consensus 55 ~pc~iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~ 106 (337)
.|......|||||++.||+.|.-.+|.+++.|||+|+.++.++.+|..+-+.
T Consensus 93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 4444468999999999999999999999999999999999999999987654
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.70 E-value=0.00099 Score=66.15 Aligned_cols=48 Identities=19% Similarity=0.546 Sum_probs=45.2
Q ss_pred cccCC----HHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659 60 HRCLP----DELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 107 (337)
Q Consensus 60 L~~LP----dEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~ 107 (337)
.+.|| ++|...||+|||..||..|-+|||+|+.+..+..+||.+..+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~ 126 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERM 126 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 47899 9999999999999999999999999999999999999998763
No 8
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.38 E-value=0.0029 Score=52.69 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=52.0
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 135 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~R 135 (337)
+..+|.+++..||..++++.|.++-..|..+. -.++.||+.+|.+.|+..... . .+....+||++|...
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~---~--~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKR---Q--KPKEPESWRELYEKL 72 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhc---c--cccccchHHHHHHHH
Confidence 35789999999999999999999999885332 346799999999999862211 0 122236999999863
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.42 E-value=0.0056 Score=64.24 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=45.3
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 107 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~ 107 (337)
+..||.|+..+|+.+||++++.++++||+.|+.++.++..|.+.|...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~ 155 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL 155 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence 589999999999999999999999999999999999999999888775
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.21 E-value=0.0063 Score=61.93 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=47.5
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccC
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL 110 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~ 110 (337)
--.||.|++++||++||..++.+++++|+.|+.++.|-.-|..+-+.+++.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r 122 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR 122 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence 357999999999999999999999999999999999999999998887764
No 11
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=94.46 E-value=0.006 Score=60.31 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=50.4
Q ss_pred hhcccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCc
Q 019659 58 LIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSG 112 (337)
Q Consensus 58 ~iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~ 112 (337)
+.+..+|+.+++.|++++..+++.++|+|++++..+...+.+|.+.|.+.|....
T Consensus 6 ~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~is~ 60 (386)
T KOG4408|consen 6 LGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLISE 60 (386)
T ss_pred cchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccccc
Confidence 3468899999999999999999999999999999999999999999999887644
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=87.78 E-value=0.42 Score=40.31 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=29.2
Q ss_pred hcccCCHHHHHHHccCCCcccchhhhhccHHHHH
Q 019659 59 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKY 92 (337)
Q Consensus 59 iL~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~ 92 (337)
.+.+||+||+..|+.+.+..++..+..+|+..+.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~ 54 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRS 54 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999985443
No 13
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=86.29 E-value=0.44 Score=48.16 Aligned_cols=37 Identities=30% Similarity=0.688 Sum_probs=32.6
Q ss_pred cccCCHHHHHHHccCC-CcccchhhhhccHHHHHhcCC
Q 019659 60 HRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRN 96 (337)
Q Consensus 60 L~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L~~d 96 (337)
.+.||+|+|..|...| ...|+.+++.||+.|+..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3689999999999999 567999999999999987653
No 14
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=67.15 E-value=6.8 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=18.8
Q ss_pred cccchhhhhccHHHHHhcCC----------CchhHHHHHhh
Q 019659 77 PYDLGKASCVCRKWKYTIRN----------PVFWRNACLKA 107 (337)
Q Consensus 77 ~~sL~~ls~VCr~f~~L~~d----------d~LWR~lC~~~ 107 (337)
..++-+++|+ |-|..-+.+ ...||.+.++.
T Consensus 148 ~~~lwR~aC~-KvW~~s~~~ln~~~~~sky~~SWR~Mfl~R 187 (366)
T KOG2997|consen 148 DPELWRLACL-KVWQRSCIKLNPKILQSKYYTSWREMFLER 187 (366)
T ss_pred ChHHHHHHHH-HHHHHhhhccchhhhhhHHHhHHHHHHhhC
Confidence 4456677776 667655432 35688887764
No 15
>PHA02123 hypothetical protein
Probab=51.16 E-value=11 Score=32.13 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=33.3
Q ss_pred CCccccCcEEeeccceeeCCccc--ccccCceeEEEeeeeeeEcCCCceEEeecCc
Q 019659 135 RPRIRIDGLYVSRNTYIRAGVAE--WKITNPVHIVCYYRYMRFFPSGRFIYKNSSQ 188 (337)
Q Consensus 135 RPrIRf~G~YIS~v~YiR~G~~~--~~~~~Pvh~VtYYRYLRF~pDGt~l~llS~~ 188 (337)
|-.|-+||+ +-.+.|+|.|.+. |+..||. |.|-|.+++.+|+.
T Consensus 95 rvmis~~gi-vqnv~yirsgsaivi~r~dnp~----------fnp~g~v~sitt~~ 139 (146)
T PHA02123 95 RVMISLNGI-VQNVDYIRSGSAIVIRRMDNPT----------FNPIGDVLSITTSS 139 (146)
T ss_pred EEEEEecce-EeeeEEEecCcEEEEEecCCCC----------CCcccceEEEecCC
Confidence 344778887 4568899999874 4668885 88999999998765
No 16
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=41.85 E-value=14 Score=29.65 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.1
Q ss_pred cccCCHHHHHHHccCCCcccchhh
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKA 83 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~l 83 (337)
+..||.||-..|+++|+-.||..+
T Consensus 72 w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 72 WNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHH
Confidence 468999999999999999988654
No 17
>PF13924 Lipocalin_5: Lipocalin-like domain
Probab=31.26 E-value=3.3e+02 Score=23.21 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=33.2
Q ss_pred cCceeEEEeeeeeeEcCCCceEEeecCccccceeeccccc--------ccCCCceEEEEEEEeCCEEEEEE
Q 019659 161 TNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFR--------AAKADCVFTGHYTLSEEKVEAAV 223 (337)
Q Consensus 161 ~~Pvh~VtYYRYLRF~pDGt~l~llS~~~P~~VV~~l~~~--------~~~~~~~~~G~~~l~~d~v~~~~ 223 (337)
.+|...+.| -+||.+-..++...+..+...-... ..+.--++.|+|+++++.|+-.+
T Consensus 25 ~~p~G~l~Y------t~dG~ms~~i~~~~r~~~~~~~~~~~t~~e~~~~~~~~~aY~G~y~v~~~~v~h~v 89 (140)
T PF13924_consen 25 PDPSGLLIY------TPDGYMSAQIMRPDRPPFASPDKWNATDAEWAAAARGYLAYSGRYEVDEDTVTHHV 89 (140)
T ss_pred CCCcEEEEE------CCCCeEEEEEecCCCCCcCcCccccCCHHHHHHHhhhheEEEEEEEEcCcEEEEEE
Confidence 367777655 7999875555544443322111111 11334688999999999655444
No 18
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=25.50 E-value=32 Score=33.26 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=7.9
Q ss_pred EEEEEEEecCCCC
Q 019659 233 LRIRLRLRGTTAG 245 (337)
Q Consensus 233 f~~~L~lr~~~~g 245 (337)
|-+-+.+-...+|
T Consensus 206 yAv~FavP~~tpG 218 (264)
T PF11794_consen 206 YAVAFAVPMNTPG 218 (264)
T ss_dssp G-EEEEEETT-TT
T ss_pred eEEEEEccCCCCC
Confidence 4567777777777
No 19
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=24.83 E-value=3.3e+02 Score=22.48 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=35.9
Q ss_pred EEeeeeeeEcCCCce----EEeecCccccceeecccccccCCCceEEEEEEEeCCEEEEEEecCCC--cceEE
Q 019659 167 VCYYRYMRFFPSGRF----IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGL--RPTVL 233 (337)
Q Consensus 167 VtYYRYLRF~pDGt~----l~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~g~--~~~~f 233 (337)
++-=+|---..++.. +.+-++.+|+.+=-.... .+.....+.|-|+|++|+..+-...+|. +++.|
T Consensus 35 ~~g~~~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~~~~-g~~~g~~~~gIY~l~gd~L~vC~~~~g~~~RPt~F 106 (107)
T TIGR03067 35 FKGDKLTVKDGEGDQGKGTFKLDPAANPKTIDLTSPD-GPDKGKTIKGIYKLDGDTLTVCFSGGGDKPRPTEF 106 (107)
T ss_pred EeCCEEEEEcCCCcceeEEEEECCCCCccEEEEEccC-CCCCCCEEEEEEEEcCCEEEEEECCCCCCCCCCCC
Confidence 444444444566643 233345556544322111 1122358999999999977766555554 66654
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.49 E-value=49 Score=33.15 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.6
Q ss_pred ccCCHHHHHHHccCCCcccchhhhhccH
Q 019659 61 RCLPDELLFEVFARMSPYDLGKASCVCR 88 (337)
Q Consensus 61 ~~LPdEILl~Ils~Ld~~sL~~ls~VCr 88 (337)
..||.||...|+++|+-.||..+..-|+
T Consensus 449 ~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 449 NILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred hhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 5899999999999999999877655443
Done!