Query 019659
Match_columns 337
No_of_seqs 296 out of 1171
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 3.5E-11 1.2E-15 85.8 3.4 44 60-103 9-52 (53)
2 2e31_A FBS1, F-box only protei 99.0 7.1E-11 2.4E-15 113.0 4.1 75 59-139 50-125 (297)
3 3l2o_B F-box only protein 4; s 98.8 2E-09 6.8E-14 103.2 2.3 48 60-107 5-52 (312)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.7 3.8E-09 1.3E-13 100.8 3.0 77 60-136 19-97 (445)
5 1p22_A F-BOX/WD-repeat protein 98.6 7.4E-09 2.5E-13 98.9 2.1 50 60-109 11-64 (435)
6 3v7d_B Cell division control p 98.6 1.1E-08 3.7E-13 97.6 2.6 49 60-108 15-64 (464)
7 2ast_B S-phase kinase-associat 97.8 6.8E-06 2.3E-10 75.9 2.3 47 60-106 9-55 (336)
8 2p1m_B Transport inhibitor res 96.7 0.00056 1.9E-08 67.7 2.3 34 60-93 6-40 (594)
9 4hfx_A Transcription elongatio 96.1 0.0015 5.3E-08 52.7 1.2 62 62-134 12-73 (97)
10 3ogk_B Coronatine-insensitive 95.9 0.0019 6.7E-08 63.9 1.4 33 61-93 14-47 (592)
11 4gzv_A Hypothetical protein; A 45.7 82 0.0028 26.7 7.9 104 140-268 12-122 (142)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.10 E-value=3.5e-11 Score=85.80 Aligned_cols=44 Identities=32% Similarity=0.655 Sum_probs=40.0
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHH
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNA 103 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~l 103 (337)
+..||+||+.+||++|++.|+.++++|||+|+.++.++.+||.+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 58999999999999999999999999999999999999999975
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.05 E-value=7.1e-11 Score=113.05 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=60.6
Q ss_pred hcccCCHHHHHHHccCCCcccch-hhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCc
Q 019659 59 IHRCLPDELLFEVFARMSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPR 137 (337)
Q Consensus 59 iL~~LPdEILl~Ils~Ld~~sL~-~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~RPr 137 (337)
.+..||+|||.+||++|++.+|+ +|++|||+|+.|+.++.+||.+|.+.+-..... ......+||++|..+++
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKR 123 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheec
Confidence 35899999999999999999999 999999999999999999999999983221111 11235789999999875
Q ss_pred cc
Q 019659 138 IR 139 (337)
Q Consensus 138 IR 139 (337)
-|
T Consensus 124 gR 125 (297)
T 2e31_A 124 RR 125 (297)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.75 E-value=2e-09 Score=103.24 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=46.6
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhh
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 107 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~ 107 (337)
++.||+||+++||+||+|+||+++++|||+|+.++.|+.|||.+|.+.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999975
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.72 E-value=3.8e-09 Score=100.82 Aligned_cols=77 Identities=23% Similarity=0.471 Sum_probs=57.3
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcch-hhhh-hhccCCCccHHHHHHhCC
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYK-ILQSRYEGSWRKMWLLRP 136 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~-~~~~-L~~~~~~~sWR~Mf~~RP 136 (337)
+..||+|++.+||++|++.||.++++|||+|+.++.++.+||.+|++........ .... ........+||..|..+.
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999998763221110 0000 001112367999987654
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.63 E-value=7.4e-09 Score=98.94 Aligned_cols=50 Identities=16% Similarity=0.424 Sum_probs=47.5
Q ss_pred cccCCHH----HHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhcc
Q 019659 60 HRCLPDE----LLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQ 109 (337)
Q Consensus 60 L~~LPdE----ILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~ 109 (337)
+..||+| |+++||++||+.||.++++|||+|+.++.++.+||.+|.+.+.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~ 64 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 5889999 9999999999999999999999999999999999999998753
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.61 E-value=1.1e-08 Score=97.59 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=46.3
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCC-CchhHHHHHhhc
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW 108 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~d-d~LWR~lC~~~w 108 (337)
+..||+||+++||+|||+.+|.++++|||+|+.++.+ +.+||.+|++..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 5899999999999999999999999999999999998 799999998764
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.79 E-value=6.8e-06 Score=75.88 Aligned_cols=47 Identities=32% Similarity=0.620 Sum_probs=43.0
Q ss_pred cccCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHh
Q 019659 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~ 106 (337)
++.||+|++.+||++|+..|+.++++|||+|+.++.++.+|+.+-..
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~ 55 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT 55 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence 58999999999999999999999999999999999889999876544
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.69 E-value=0.00056 Score=67.72 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=29.4
Q ss_pred cccCCHHHHHHHccCCC-cccchhhhhccHHHHHh
Q 019659 60 HRCLPDELLFEVFARMS-PYDLGKASCVCRKWKYT 93 (337)
Q Consensus 60 L~~LPdEILl~Ils~Ld-~~sL~~ls~VCr~f~~L 93 (337)
++.||+|||.+||++|+ .+|+.++++|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 57899999999999999 99999999999999988
No 9
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=96.08 E-value=0.0015 Score=52.67 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=35.4
Q ss_pred cCCHHHHHHHccCCCcccchhhhhccHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHh
Q 019659 62 CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 134 (337)
Q Consensus 62 ~LPdEILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWR~lC~~~w~~~~~~~~~~L~~~~~~~sWR~Mf~~ 134 (337)
..|.++|.-||...+|..|.++-.-|- ..+-.++.||+.+|.+.|+... +....+||+||..
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~---------p~e~esWRelY~r 73 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEER---------PEEYESWREMYLR 73 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---------CCSSSCHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccC---------CCCCCCHHHHHHH
Confidence 468889999999899999988888886 3345667999999999997532 1234799999975
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.93 E-value=0.0019 Score=63.89 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHccCC-CcccchhhhhccHHHHHh
Q 019659 61 RCLPDELLFEVFARM-SPYDLGKASCVCRKWKYT 93 (337)
Q Consensus 61 ~~LPdEILl~Ils~L-d~~sL~~ls~VCr~f~~L 93 (337)
..||+|+|.+||++| +.+|+.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=45.72 E-value=82 Score=26.72 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=59.8
Q ss_pred cCcEEeeccceeeCCcc-ccc-ccCceeEEEeeeeeeEcCCCceEEeecCccccceeecccccccCCCceEEEEEEEeCC
Q 019659 140 IDGLYVSRNTYIRAGVA-EWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 217 (337)
Q Consensus 140 f~G~YIS~v~YiR~G~~-~~~-~~~Pvh~VtYYRYLRF~pDGt~l~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d 217 (337)
+.|+| --|.|+..... ... -..|..-| ..+|||+.-.+.......+ =...|.|.+..|
T Consensus 12 L~GvW-Q~c~y~~~~~~~~~~l~~s~~~KI-------lS~DgtF~N~~m~~~~~ai------------It~yGtY~l~SD 71 (142)
T 4gzv_A 12 LKGIW-QLCHYVSESPDVPGALKPSNTFKV-------LSDDGRIVNFTIIPGADAI------------ITGYGTYKQLTD 71 (142)
T ss_dssp CCEEE-EEEEEEESSTTSCCEEEEEEEEEE-------ECTTSEEEEEECCTTSCCE------------EEEEEEEEEEET
T ss_pred ceEEe-EEeeEeecCCCCCceEeecCceEE-------ECCCCcEEEEEEeCCCCcE------------EEEeEEEEecCC
Confidence 55777 44667665321 111 01233333 6899998777732211221 145799999888
Q ss_pred EEEEEEe-----cCCCcceEEEEEEEEecCCCCCcceeEEeEeEEecCCCCCCCCC
Q 019659 218 KVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGH 268 (337)
Q Consensus 218 ~v~~~~~-----~~g~~~~~f~~~L~lr~~~~g~~nkL~~~~~~s~~~~~~~~~~~ 268 (337)
....+-+ .|-...+.-.+++.+.. +|.|...-+..-+.+++|++.|
T Consensus 72 ~~Y~E~i~kni~~p~~~g~~n~L~fe~~~-----dn~l~lsy~~~~~~~G~e~~~w 122 (142)
T 4gzv_A 72 DSYKESIEKNIHLPMLDNQDNILEFEIKD-----NDYLHLKYFIKSDLNGNELNTW 122 (142)
T ss_dssp TEEEEEEEEESSSGGGTTEEEEEEEEEET-----TTEEEEEEEEEECTTCCEEEEE
T ss_pred CeeeeeecccccCccccCCccEEEEEEcc-----CCEEEEEEEccCCCCCcccCCc
Confidence 4444333 13223333356776665 3778777788888998886655
Done!