Query 019661
Match_columns 337
No_of_seqs 144 out of 1341
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00139 hypothetical protein; 100.0 2.1E-67 4.6E-72 492.9 32.1 312 5-337 7-320 (320)
2 PRK09553 tauD taurine dioxygen 100.0 1.2E-37 2.5E-42 288.4 15.2 241 41-334 20-268 (277)
3 TIGR02409 carnitine_bodg gamma 100.0 9.5E-34 2.1E-38 272.1 19.4 221 50-336 125-352 (366)
4 TIGR02410 carnitine_TMLD trime 100.0 5.8E-33 1.3E-37 266.0 20.5 240 38-336 105-348 (362)
5 PF02668 TauD: Taurine catabol 100.0 2E-33 4.3E-38 256.7 12.2 227 43-334 19-257 (258)
6 cd00250 CAS_like Clavaminic ac 100.0 5.6E-30 1.2E-34 235.5 22.5 228 38-334 23-256 (262)
7 COG2175 TauD Probable taurine 100.0 2.7E-29 5.8E-34 230.2 16.1 232 47-332 29-271 (286)
8 KOG3888 Gamma-butyrobetaine,2- 99.9 5.3E-24 1.2E-28 194.6 15.6 239 39-337 143-388 (407)
9 KOG3889 Predicted gamma-butyro 99.9 5.1E-24 1.1E-28 188.3 11.7 224 48-335 126-354 (371)
10 PRK02963 carbon starvation ind 99.9 1.5E-20 3.3E-25 172.9 17.0 194 59-327 85-293 (316)
11 PF08943 CsiD: CsiD; InterPro 98.4 3.3E-06 7.2E-11 75.3 10.5 194 59-327 72-281 (297)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 69.0 1.8 3.9E-05 33.0 0.3 32 305-336 66-98 (100)
13 smart00702 P4Hc Prolyl 4-hydro 63.0 7 0.00015 33.2 2.9 36 301-336 139-177 (178)
14 PF12851 Tet_JBP: Oxygenase do 57.0 9.8 0.00021 32.6 2.7 27 300-326 127-153 (171)
15 PF06940 DUF1287: Domain of un 51.3 9 0.00019 32.4 1.5 12 303-314 105-116 (164)
16 COG4340 Uncharacterized protei 45.4 14 0.00029 32.1 1.7 26 301-326 175-200 (226)
17 smart00702 P4Hc Prolyl 4-hydro 44.9 23 0.0005 30.0 3.2 41 113-153 92-134 (178)
18 PRK05467 Fe(II)-dependent oxyg 43.8 25 0.00055 31.6 3.3 41 112-152 88-137 (226)
19 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 40.3 13 0.00028 32.6 0.8 33 301-333 153-192 (195)
20 TIGR00113 queA S-adenosylmethi 38.0 18 0.0004 34.5 1.6 21 304-324 48-68 (344)
21 KOG0464 Elongation factor G [T 37.3 25 0.00053 34.5 2.3 41 128-171 452-492 (753)
22 PRK00147 queA S-adenosylmethio 33.2 25 0.00055 33.6 1.7 21 304-324 49-69 (342)
23 PF02547 Queuosine_synth: Queu 33.0 18 0.0004 34.5 0.7 22 304-325 48-69 (341)
24 PRK01424 S-adenosylmethionine: 32.7 25 0.00054 33.7 1.5 22 304-325 46-67 (366)
25 TIGR02408 ectoine_ThpD ectoine 32.4 67 0.0015 29.6 4.4 31 52-85 20-50 (277)
26 PF05118 Asp_Arg_Hydrox: Aspar 31.7 28 0.00061 29.4 1.6 32 301-333 124-156 (163)
27 PF05721 PhyH: Phytanoyl-CoA d 31.7 37 0.0008 28.7 2.4 31 299-330 178-210 (211)
28 PHA02813 hypothetical protein; 29.2 45 0.00098 31.9 2.6 41 112-152 102-144 (354)
29 COG0809 QueA S-adenosylmethion 28.6 34 0.00073 32.5 1.6 19 304-322 49-67 (348)
30 PF14226 DIOX_N: non-haem diox 28.4 1.9E+02 0.0042 22.1 5.9 30 46-77 13-42 (116)
31 PF13759 2OG-FeII_Oxy_5: Putat 25.7 46 0.001 25.4 1.7 36 299-335 64-100 (101)
32 PF12990 DUF3874: Domain of un 25.4 22 0.00048 26.0 -0.1 35 131-165 7-41 (73)
33 PF13661 2OG-FeII_Oxy_4: 2OG-F 24.3 1E+02 0.0022 21.8 3.2 16 113-128 20-35 (70)
34 PF07892 DUF1667: Protein of u 22.1 68 0.0015 24.0 1.9 35 280-314 36-70 (82)
35 COG5285 Protein involved in bi 21.3 78 0.0017 29.6 2.5 38 47-85 9-46 (299)
36 PF08285 DPM3: Dolichol-phosph 21.2 54 0.0012 25.0 1.3 44 133-176 46-90 (91)
37 PF00877 NLPC_P60: NlpC/P60 fa 21.0 57 0.0012 24.9 1.4 12 304-315 51-62 (105)
38 PRK05467 Fe(II)-dependent oxyg 20.3 75 0.0016 28.5 2.2 34 301-335 141-175 (226)
39 PF10417 1-cysPrx_C: C-termina 20.1 77 0.0017 20.1 1.6 14 300-313 11-24 (40)
40 PF00446 GnRH: Gonadotropin-re 20.1 54 0.0012 14.4 0.6 8 301-308 3-10 (10)
No 1
>PLN00139 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-67 Score=492.89 Aligned_cols=312 Identities=41% Similarity=0.763 Sum_probs=280.1
Q ss_pred ceeecCCCccccCCCCCCCCCCeEEecCCCCCCChHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHh
Q 019661 5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF 84 (337)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~ 84 (337)
|.+-++++++.++ +.++|++|+|......+.+++.+|.+.++++|+++|.+||+|+||||+ +.++++|++|+++|
T Consensus 7 ~~~~~~~~~~~~~----~~~~p~vi~~~~~~~~~~~~l~~~~~~~~~~l~~~L~~hGavlfRG~~-i~~~~~f~~~a~~f 81 (320)
T PLN00139 7 FKVGKCEGQKVVD----GETMPLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAF 81 (320)
T ss_pred eeeccccCcccCC----CCCCCeEEecCcccccchhhHHHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHHHHHh
Confidence 5566788888777 899999999987433456679999999999999999999999999999 87899999999999
Q ss_pred CCCCCCCccCCccceeecCccccCCCCCCCCCcCcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCc
Q 019661 85 GYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYP 164 (337)
Q Consensus 85 G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p 164 (337)
|...+.|.+ ..+|..+.+.|++++++|....|.||+|++|.+.||.+++|||+++|..||+|+|||+++||++|+++.|
T Consensus 82 g~~~~~y~~-~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~GGeT~~aD~~~v~~~L~~~~p 160 (320)
T PLN00139 82 GWDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFP 160 (320)
T ss_pred CccccccCC-CCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCCCCCCeeecHHHHHHHhhhhCH
Confidence 998778877 4678878888998888888888999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEE-eeeCeE
Q 019661 165 DFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIM-GPIPAI 243 (337)
Q Consensus 165 ~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~-~~~P~v 243 (337)
+++++|+++||+|+|+++.+....++.|++|+++|+|+|+++||+ +|++.|++++|.+||. +.+. ...|++
T Consensus 161 ~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~-------~~~~~g~~~eW~~dg~-l~~~~~~~~~~ 232 (320)
T PLN00139 161 EAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAER-------RAKALGMDMEWLPNGG-VKTILGPRSLT 232 (320)
T ss_pred HHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHH-------HHHHcCCeEEEcCCCc-EEEEEeeccce
Confidence 999999999999999887654334567899999999999999999 9999999999999997 4444 566777
Q ss_pred Eec-CCCCceEEeecccccccCCCCCCCCCCccceeCCCCCCCHHHHHHHHHHHhhhccccccCCCCEEEEecccccccC
Q 019661 244 KYD-ESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHAR 322 (337)
Q Consensus 244 ~~h-P~tG~~~~fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDili~DN~~v~HgR 322 (337)
+.| |.||+++|||+++.+|.. .+..++||||++|+.+++++|.+++++.++.++||+||||++||+++||||
T Consensus 233 ~~~~~~tg~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GDvl~iDN~~~~HGR 305 (320)
T PLN00139 233 KVFDGRKGRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGR 305 (320)
T ss_pred eccCCCCCCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCCEEEEeChhhhcCC
Confidence 775 599999999999887753 234679999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeccC
Q 019661 323 RSFNPPRRILASLCK 337 (337)
Q Consensus 323 ~~f~g~R~~~~~~~~ 337 (337)
.+|+|+||++|+|++
T Consensus 306 ~pf~g~Rrvlv~m~~ 320 (320)
T PLN00139 306 RPSLPPRKVLVATCK 320 (320)
T ss_pred CCCCCCceEEEEecC
Confidence 999999999999985
No 2
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=288.42 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=163.6
Q ss_pred HHHHH-HHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccc---cCCCCCCCCC
Q 019661 41 RLAEK-VRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVF---TANESPPDQK 116 (337)
Q Consensus 41 ~l~~~-~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~---~~~~~~~~~~ 116 (337)
+|.++ .++..++|+++|.+||+++||||+ + +++++.+|+++||++...+..+..++. ++|+ +++..+.+..
T Consensus 20 dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~-l-~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~ 94 (277)
T PRK09553 20 DLTRPLSDNQFEQLYHALLRHQVLFFRDQP-I-TPQQQRDLAARFGDLHIHPVYPHAEGV---PEIIVLDTHNDNPPDND 94 (277)
T ss_pred ccCCcCCHHHHHHHHHHHHHCCEEEECCCC-C-CHHHHHHHHHHhCCCccCCCCCCCCCC---CeEEEEeccCCCCCCCC
Confidence 45554 467789999999999999999999 7 699999999999987533332222221 2222 2222222222
Q ss_pred cCcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCcc
Q 019661 117 IPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWK 196 (337)
Q Consensus 117 i~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~ 196 (337)
.||+|++|.+.||.+++|||++.|..||+|.|||+.+||+.|+ ++++++|+...+.+ .+...... -.
T Consensus 95 -~wHtD~sy~~~pp~~~~L~~~~~p~~GG~T~fad~~~ay~~L~---~~~~~~l~~l~~~h--~~~~~~~~-------~~ 161 (277)
T PRK09553 95 -NWHTDVTFIETPPLGAILAAKQLPSTGGDTLWASGIAAYEALS---APFRQLLSGLTAEH--DFRKSFPE-------YK 161 (277)
T ss_pred -CCeecccCeeCCCceeEEEEEecCCCCCccHhhhHHHHHHhCC---HHHHHHhcCcEEEE--cchhhccc-------cc
Confidence 6999999999999999999999999999999999999999999 78999999655554 22110000 00
Q ss_pred cccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEEe-ecccccccCCCCCCCCCCcc
Q 019661 197 STFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWF-NSMVAAYTGWKDDRNDPVKA 275 (337)
Q Consensus 197 ~~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~f-n~~~~~~~~~~~~~~~~~~~ 275 (337)
........ ..|.+... ......||+|++||.||++.+| |......+
T Consensus 162 ~~~~~~~~--------------------~~~~~~~~-~~~~~~hPlVr~hp~tG~k~L~~n~~~~~~i------------ 208 (277)
T PRK09553 162 YRKTEEEH--------------------QRWEEAVA-KNPPLLHPVVRTHPVSGRQALFVNEGFTTRI------------ 208 (277)
T ss_pred cccccccc--------------------cccccccc-cCCCCCCCeEEeCCCCCceeEEeccccccEe------------
Confidence 00000000 00000000 0011269999999999999865 44433333
Q ss_pred ceeCCCCCCCHHHHHHHHHHHhhh--ccccccCCCCEEEEecccccccCCC-CCCCceeeee
Q 019661 276 VTFGNGKPLPADIVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRS-FNPPRRILAS 334 (337)
Q Consensus 276 ~~~gdg~~~~~~~l~~l~~~~~~~--~~~~~W~~GDili~DN~~v~HgR~~-f~g~R~~~~~ 334 (337)
.|-..+.+.++|+.|.+.+.++ .|+|+|++||+|||||++++|+++. |.+.+|++-+
T Consensus 209 --~gl~~~es~~ll~~L~~~~~~p~~~~~~~w~~GD~viwDNr~~~H~a~~~~~~~~R~~~R 268 (277)
T PRK09553 209 --VDLSEKESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHR 268 (277)
T ss_pred --CCCCHHHHHHHHHHHHHHhcCcCeEEEEecCCCCEEEEcCcceeEecccCCCCCceEEEE
Confidence 2222334578888888888765 5999999999999999999999876 4455556544
No 3
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=100.00 E-value=9.5e-34 Score=272.15 Aligned_cols=221 Identities=18% Similarity=0.244 Sum_probs=160.5
Q ss_pred HHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccccCCCCCCCCCcCcccCCCCCCCC
Q 019661 50 KPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEF 129 (337)
Q Consensus 50 ~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~~HtD~sy~~~~ 129 (337)
...+.++|.+||+|+|||++ + +++++.+|+++||++....+|.. ..+..++...+.++++..++||||++|.+.|
T Consensus 125 ~~~~~~~l~~~G~v~~rg~~-~-~~~~~~~~~~~~G~~~~~~~g~~---~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~p 199 (366)
T TIGR02409 125 LLDWLSAVRDVGIAVLKGAP-T-KPGAVEKLGKRIGFIRETNYGLL---FEVRLKADANNLAYTNGGLPFHTDNPYRDHP 199 (366)
T ss_pred HHHHHHHHHhccEEEEeCCC-C-CHHHHHHHHHHhccccccCCCCe---EEEEecCCccccccccccccccccCCccCCC
Confidence 45566679999999999999 6 89999999999999754444421 1111111122334556789999999999999
Q ss_pred CceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhHHHh
Q 019661 130 PSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEE 209 (337)
Q Consensus 130 P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~e~ 209 (337)
|.+++|+|+++|..||+|.|+|+.+||+.|+++.|+.++.|.+..+.|... ...
T Consensus 200 P~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~~~~p~~~~~L~~~~~~~~~~-~~~------------------------- 253 (366)
T TIGR02409 200 PGLQLLHCLESTVEGGDSLFVDGFAVAEALRVENPEAFRILTSTPVEFREE-GDD------------------------- 253 (366)
T ss_pred CceeeeeecccCCCCcceeeeeHHHHHHHHhHhCHHHHHHHhcCccceEEc-CCC-------------------------
Confidence 999999999999999999999999999999999999999998655444321 000
Q ss_pred hchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCc--eEEeecccccccCCCCCCCCCCccceeCCCCCCCHH
Q 019661 210 SSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQR--KIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPAD 287 (337)
Q Consensus 210 ~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~--~~~fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~ 287 (337)
. ......||+|+.|| +|+ .+.||+.....+. .....+..++ .+
T Consensus 254 ---------------------~--~~~~~~~Pvi~~~~-~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~ 298 (366)
T TIGR02409 254 ---------------------V--HDLRARHPVIELDD-DGEVVKIRFNNASRDWFF----------DVPPSRVQDF-YA 298 (366)
T ss_pred ---------------------c--eeeEeccCEEEECC-CCCEEEEEeCCcccCccC----------CCCHHHHHHH-HH
Confidence 0 11123699999999 575 5677753211110 0011111111 35
Q ss_pred HHHHHHHHHhh--hccccccCCCCEEEEecccccccCCCCC---CCceeeeecc
Q 019661 288 IVHDCLNILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFN---PPRRILASLC 336 (337)
Q Consensus 288 ~l~~l~~~~~~--~~~~~~W~~GDili~DN~~v~HgR~~f~---g~R~~~~~~~ 336 (337)
+|+.|.+++.+ +.+.|+|++||+|||||++|+|||++|+ |+|.+..+..
T Consensus 299 al~~l~~~~~~p~~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y~ 352 (366)
T TIGR02409 299 AYRRFTELIEQPRFKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCYA 352 (366)
T ss_pred HHHHHHHHHcCcccEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEEE
Confidence 67777887775 4589999999999999999999999996 6888877654
No 4
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=100.00 E-value=5.8e-33 Score=266.02 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=169.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccccCCCCCCCCCc
Q 019661 38 TVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKI 117 (337)
Q Consensus 38 ~~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i 117 (337)
+.+++.+...+....+.++|.+||+|+|||++ + +++++++|+++||++.....|.. ..+....-..+.++++..+
T Consensus 105 ~~~~~~~~~d~~l~~~l~~l~~~G~v~~~g~~-~-~~~~~~~~a~riG~~r~t~~g~~---~~v~~~~~~~~~ayt~~~l 179 (362)
T TIGR02410 105 HFKTTYDHTDSTLKSFSKNIYKYGFTFVDNVP-V-TPEATEKLCERISIIRPTHYGGF---WDFTSDLSKNDTAYTSLAI 179 (362)
T ss_pred eHHHHhccCHHHHHHHHHHHHhhCEEEEcCCC-C-CHHHHHHHHHHhccceecCCCCe---EEEEecCCCcccccccCCc
Confidence 34444443223455666679999999999999 6 89999999999999754444521 1121111122334566789
Q ss_pred CcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCccc
Q 019661 118 PFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS 197 (337)
Q Consensus 118 ~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~ 197 (337)
+||||++|.+.||++++|+|++++..||+|.|+|+..||+.|+++.|+.++.|.+..+.|.......
T Consensus 180 ~~HtD~~y~~~pp~~~~L~c~~~~~~GG~t~~~d~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~~------------- 246 (362)
T TIGR02410 180 DMHTDGTYWDETPGLQLFHCLTHDGTGGETVLVDGFYCAEQLRKEAPEDFELLTKVPIPHHYSGESD------------- 246 (362)
T ss_pred cccccCCCCCCCCcceeEeeeecCCCCCceeeeeHHHHHHHHhhhChHHHHHHhcCccceEEccCcC-------------
Confidence 9999999999999999999999999999999999999999999999999999987665543210000
Q ss_pred ccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEEeecccccccCCCCCCCCCCccce
Q 019661 198 TFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVT 277 (337)
Q Consensus 198 ~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~fn~~~~~~~~~~~~~~~~~~~~~ 277 (337)
.. . ......||+|+.||.+|+...++........ + ..+.
T Consensus 247 --------~~-----------------------~--~~~~~~~Pvi~~~p~~G~~~~ir~~~~~r~~-~-------~~~~ 285 (362)
T TIGR02410 247 --------SV-----------------------F--IHPDYPQPVLTLDPSTGELTQIRWNNSDRAV-M-------DCLN 285 (362)
T ss_pred --------ce-----------------------e--eeeccCCCEEEecCCCCcEEEEEcCCCcccc-c-------ccCC
Confidence 00 0 1112258999999999987654321111000 0 0011
Q ss_pred eCCCCC--CCHHHHHHHHHHHhh--hccccccCCCCEEEEecccccccCCCCCCCceeeeecc
Q 019661 278 FGNGKP--LPADIVHDCLNILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLC 336 (337)
Q Consensus 278 ~gdg~~--~~~~~l~~l~~~~~~--~~~~~~W~~GDili~DN~~v~HgR~~f~g~R~~~~~~~ 336 (337)
++.-+. ..+++|+.|.+++.+ +.+.|+|+|||++||||+|+||||++|+|.|.+..+..
T Consensus 286 ~~~~~~~~~~~~Al~~l~~~~~~p~~~~~~~l~pGd~vi~DN~rvLHgRtaf~g~R~L~G~Y~ 348 (362)
T TIGR02410 286 WSSPYDVPKFYKAIRRFNKIITDPDNEIEFKLRPGTVLIFDNWRVLHSRTSFTGYRRMCGCYL 348 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcChhcEEEEEcCCccEEEEeeEEEeecCCCcCCceEEEEEEE
Confidence 111111 124788888888876 46999999999999999999999999999999887764
No 5
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=100.00 E-value=2e-33 Score=256.67 Aligned_cols=227 Identities=25% Similarity=0.391 Sum_probs=159.2
Q ss_pred HHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCC----CCccCCc-cceeecCccccCCCCC--CCC
Q 019661 43 AEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEEL----PYVGGAA-PRTNIVGRVFTANESP--PDQ 115 (337)
Q Consensus 43 ~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~----~~~g~~~-~r~~~~~~v~~~~~~~--~~~ 115 (337)
..+.++..++|++.|.++|+|+|||++ + +.+++.+|+++||.+.. ...|... .+... +++......+ +..
T Consensus 19 ~~~~~~~~~~~~~~l~~~G~vvlrg~~-~-~~~~~~~~~~~~G~~~~~~~~~~~g~~~~v~~~~-~~~~~~~~~~~~~~~ 95 (258)
T PF02668_consen 19 LSDEDEELEELREALAEYGFVVLRGFP-L-DPEQFEALASRLGPLMSHPRSTFYGDIWDVRSVI-PEVEDSSYTPSSSNG 95 (258)
T ss_dssp ECHHHCHHHHHHHHHHHHSEEEEESCT-S-SHHHHHHHHHHHSEBEEESSSSECCSCEEEEEEC-TTEETTTTSTTT-SS
T ss_pred CCchHHHHHHHHHHHhcccEEEEcCCC-C-CHHHHHHHHHhhCccccccccccccccccccccc-ccccccccCChhhhc
Confidence 344456788899999999999999999 6 99999999999996521 1122100 01111 1222222211 346
Q ss_pred CcCcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCc
Q 019661 116 KIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGW 195 (337)
Q Consensus 116 ~i~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w 195 (337)
.++||+|++|.+.+|++++|+|+++|..||+|.|+|+..+|++|+ |++++.|+ .++.|.+...... +
T Consensus 96 ~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~---pe~~~~L~-~~~~~~~~~~~~~---------~ 162 (258)
T PF02668_consen 96 ELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADARAVYERLS---PELLERLQ-EPVRYIRRFPSSR---------Y 162 (258)
T ss_dssp GEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEHHHHHHCSH---HHHHHHHC-TTEEEEEECGGSS---------G
T ss_pred ccccccccCcccCCcceeEEEeeccCCCCCccccccHHHHHhhCC---HHHHhhhh-ceeeEeecccccc---------c
Confidence 799999999999999999999999999999999999999999999 99999997 4888887643210 0
Q ss_pred ccccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEEeecccccccCCCCCCCCCCcc
Q 019661 196 KSTFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKA 275 (337)
Q Consensus 196 ~~~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~fn~~~~~~~~~~~~~~~~~~~ 275 (337)
+ . ......+|+|..||.||++++|++........
T Consensus 163 ------~------~------------------------~~~~~~~Piv~~~p~~~~~~~~~~~~~~~~~~---------- 196 (258)
T PF02668_consen 163 ------E------E------------------------LRPSQSHPIVRTHPETGRKILYSSPFASRFQG---------- 196 (258)
T ss_dssp ------S------C------------------------CSEEEEEESEEEETTTTCEEECESTTEEEETT----------
T ss_pred ------c------c------------------------cCCceEeeEEEEcCcccceeEecccceeeecC----------
Confidence 0 0 12233789999999999999987752111100
Q ss_pred ceeCCCCCCCHHHHHHHHHHH--hhhccccccCCCCEEEEecccccccCCCC---CCCceeeee
Q 019661 276 VTFGNGKPLPADIVHDCLNIL--EEESVAIPWQKGDVLLIDNWAVLHARRSF---NPPRRILAS 334 (337)
Q Consensus 276 ~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~W~~GDili~DN~~v~HgR~~f---~g~R~~~~~ 334 (337)
. ...+...++++.|.+.+ .++.+.|.|++||++||||++++|||++| .+.|.++.+
T Consensus 197 ~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R~ 257 (258)
T PF02668_consen 197 P---PDLEESQEALAALDALLKDPEYTYRHRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLRV 257 (258)
T ss_dssp S---CEHHHHHHHHHHHHHHHTSGGGEEEEE--TTEEEEEETTTEEEEE--E-STTSSEEEEEE
T ss_pred c---CChHHHHHHHHHHHHHHhChhhcccccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEEe
Confidence 0 00112356778888877 45579999999999999999999999999 445555443
No 6
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=99.97 E-value=5.6e-30 Score=235.47 Aligned_cols=228 Identities=19% Similarity=0.268 Sum_probs=163.4
Q ss_pred ChHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccccCCCCCCCCCc
Q 019661 38 TVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKI 117 (337)
Q Consensus 38 ~~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i 117 (337)
+..++.+..... .++...+.++|+++|+|++ + +.+++.+++++||.....++|...+ +.......+.++++..+
T Consensus 23 ~~~~~~~~~~~~-~~~l~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~---v~~~~~~~~~~~t~~~l 96 (262)
T cd00250 23 SFLEVLELDSPL-GKLLLASAGVGFAELEGAP-L-DPAALLGLAERIGFIRGTLYGDVVP---VPGKENAQNGAYTNTLL 96 (262)
T ss_pred cHHHHhcCHHHH-HHHHHHHHHhcEEEEeCCC-C-CHHHHHHHHHHhcccccccCCCeEE---eccCCCccccccccCCc
Confidence 445555444433 4455569999999999999 4 8899999999999765555553221 11111123445677899
Q ss_pred CcccCCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCccc
Q 019661 118 PFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS 197 (337)
Q Consensus 118 ~~HtD~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~ 197 (337)
+||||++|.+.||++++|+|++++..||+|.|+|+..+|+.|.++.|++++.|++..+.|.+.-...
T Consensus 97 ~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~~------------- 163 (262)
T cd00250 97 PLHTDLAYHEYRPGLQILHCLRNTATGGATLLVDGFRVALKLLREDPEAFELLSRVPVRHAYPGSSG------------- 163 (262)
T ss_pred CccccCCCCCCCCceEEEEEeccCCCCCcceeeeHHHHHHHHHhhCHHHHHHHhCCCeeEEEcCCCc-------------
Confidence 9999999999999999999999999999999999999999998778999999997777776421100
Q ss_pred ccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceE-EeecccccccCCCCCCCCCCccc
Q 019661 198 TFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI-WFNSMVAAYTGWKDDRNDPVKAV 276 (337)
Q Consensus 198 ~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~-~fn~~~~~~~~~~~~~~~~~~~~ 276 (337)
. . ......+|+|..|| |.++ .|+...... .
T Consensus 164 ---~-------~------------------------~~~~~~~Pii~~~~--~~~~~r~~~~~~~~-------------~ 194 (262)
T cd00250 164 ---T-------M------------------------FSSYQLAPVLELDP--EDPVLRYNNYDNFS-------------V 194 (262)
T ss_pred ---c-------c------------------------eeeecccCEEEeCC--CccEEEEeCCCCCC-------------C
Confidence 0 0 11223689999999 5554 454321000 0
Q ss_pred eeCCCCCCCHHHHHHHHHHHhh--hccccccCCCCEEEEecccccccCCCCCC---Cceeeee
Q 019661 277 TFGNGKPLPADIVHDCLNILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFNP---PRRILAS 334 (337)
Q Consensus 277 ~~gdg~~~~~~~l~~l~~~~~~--~~~~~~W~~GDili~DN~~v~HgR~~f~g---~R~~~~~ 334 (337)
.. ++.+...++|+.|.+++.+ +.++|+|++||+|||||++++|||++|++ .+|+|.+
T Consensus 195 p~-~~~~~~~~al~~l~~~~~~~~~~~~~~l~~Gdivi~DN~r~lHgR~~f~~~~~~~R~L~r 256 (262)
T cd00250 195 PF-DEVKEAYEALAELVALIEDPDNQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLKG 256 (262)
T ss_pred CH-HHHHHHHHHHHHHHHHHcChhhEEEEEcCCCCEEEEechhhhcCCCCCCCCCCCceEEEE
Confidence 00 0001336788999998887 57999999999999999999999999975 3455444
No 7
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.7e-29 Score=230.23 Aligned_cols=232 Identities=19% Similarity=0.232 Sum_probs=156.5
Q ss_pred HhhHHHHHHHHHhcCEEEEeCC-CCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccc---cCC-CCCCCCCcCccc
Q 019661 47 RTQKPFLDSLLLKAGSVLFRGF-DDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVF---TAN-ESPPDQKIPFHH 121 (337)
Q Consensus 47 ~~~~~~L~~~l~~~G~vl~rg~-~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~---~~~-~~~~~~~i~~Ht 121 (337)
....++|+.++.++|+|+||+| . + +++++.+++.+||.....+..... . .....+. +.. .+.++. ..||+
T Consensus 29 ~~~~~~i~~~~~~~~vv~fR~q~~-~-d~a~q~~~~~~fG~~~~~~~~~~~-~-~~~~ei~~~~~~~~~~~p~~-~~wH~ 103 (286)
T COG2175 29 DATVDAIRRAVLEHKVVFFRDQAH-L-DDAEQLALARRFGELHIHPTPAVH-L-EGHPEILVYDNAEGNGMPDN-AVWHT 103 (286)
T ss_pred hhhHHHHHHHHHHcCEEEEcCCCC-C-ChHHHHhhhhhceeeEeeccCccc-c-cCCCceeEecccccCCCCcc-ccCcc
Confidence 4567999999999999999999 6 6 666667799999987533322100 0 0011111 111 111133 67999
Q ss_pred CCCCCCCCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEE--cCCCCCCCCCCCCCccccc
Q 019661 122 EMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV--LGEKDDPSSPIGRGWKSTF 199 (337)
Q Consensus 122 D~sy~~~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~--~~~~~~~~~~~~~~w~~~f 199 (337)
|.+|.+.||.+.+|+|++.|..||+|.|+|+..+|+.|++ .+++.+....+.|+.. +.... .+.+|...
T Consensus 104 D~~f~~~~p~~~~l~~v~~P~~gg~T~f~d~~~A~~~L~~---~~r~~~~gl~~~h~~~~~~~~~~-----~~~~~~p~- 174 (286)
T COG2175 104 DVTFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPE---PLRELLRGLPAHHSNEERFPRER-----PSKTERPH- 174 (286)
T ss_pred cceeecCCCceeEEEEeecCCCCCCceeechHHHHHhccH---HHHHHHhcchhcccccccccccc-----cCcCcCcc-
Confidence 9999999999999999999999999999999999999985 5677777544444410 11110 01111110
Q ss_pred ccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEEe-ecccccccCCCCCCCCCCcccee
Q 019661 200 LTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWF-NSMVAAYTGWKDDRNDPVKAVTF 278 (337)
Q Consensus 200 ~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~f-n~~~~~~~~~~~~~~~~~~~~~~ 278 (337)
..... ..+ ......||+|++||.||++++| |.....++.
T Consensus 175 -----~~~~~---------------~~~------~~~~~~~Pvvr~hP~~g~~~l~~n~~~~~~i~-------------- 214 (286)
T COG2175 175 -----ARFRE---------------IVR------KNPPTEHPVVRTHPETGEKALFVNEGFTTRIV-------------- 214 (286)
T ss_pred -----chhhh---------------hhc------cCCcccCceEEeCCCcCceeeeecCCcceecc--------------
Confidence 00000 000 1222379999999999999876 554555442
Q ss_pred CCCCCCCHHHHHHHHHHHhhh--ccccccCCCCEEEEecccccccCCCCCCC-ceee
Q 019661 279 GNGKPLPADIVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSFNPP-RRIL 332 (337)
Q Consensus 279 gdg~~~~~~~l~~l~~~~~~~--~~~~~W~~GDili~DN~~v~HgR~~f~g~-R~~~ 332 (337)
|.....++++|+.|.+.+.++ +|+++||+||||||||+++||+|+.|.+. ||++
T Consensus 215 g~~~~~~~~ll~~L~~~~~~pe~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l 271 (286)
T COG2175 215 GLPPKESEALLAELQAHLTDPENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRIL 271 (286)
T ss_pred CCCHHHHHHHHHHHHHhhcChhhEEEEecCCCCEEEEeCcceeeccccCCccceEEE
Confidence 222333457899999988875 59999999999999999999999998653 5544
No 8
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.91 E-value=5.3e-24 Score=194.57 Aligned_cols=239 Identities=17% Similarity=0.229 Sum_probs=171.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccccCCCCCCCCCcC
Q 019661 39 VSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIP 118 (337)
Q Consensus 39 ~~~l~~~~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~ 118 (337)
.+++++..+...++|.. |..+|+++++|.+ . +....+++++++|.+..+..|. ...+....-.+|.++....++
T Consensus 143 yee~l~~Ds~l~qwLqa-L~~~GiA~lkGAP-~-~~~~v~kl~~RiG~irrT~yGe---~F~V~ak~~asn~Ay~~~~LP 216 (407)
T KOG3888|consen 143 YEEVLDQDSVLFQWLQA-LAKYGIAFLKGAP-L-DSGVVRKLGERIGFIRRTTYGE---TFEVQAKPDASNYAYLAGPLP 216 (407)
T ss_pred HHHHhCcHHHHHHHHHH-HHhheeEEEecCC-C-CchHHHHHHhhhcceeeeeccc---eEEEeecCCcccceeecCCCC
Confidence 46666666677888887 8999999999999 4 6788999999999987666663 233333334667777778999
Q ss_pred cccCCCCCCCCCceEEeeeeecCCC-CcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCccc
Q 019661 119 FHHEMAQVPEFPSKLFFFCEVEPGS-GGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS 197 (337)
Q Consensus 119 ~HtD~sy~~~~P~~~~l~c~~~~~~-GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~ 197 (337)
+|||+.|...+|++++|+|+....+ ||.+.|+|+..|.+.|.+++||.++.|....|.|.-...++..
T Consensus 217 lHTD~P~le~~PgvqiLH~l~qtes~gg~n~lvDgF~Va~~lr~~~pE~FeiL~~~pVd~~dig~D~~~----------- 285 (407)
T KOG3888|consen 217 LHTDLPYLEYPPGVQILHCLVQTESPGGMNLLVDGFYVAEQLRESHPEAFEILSSVPVDWIDIGSDGDY----------- 285 (407)
T ss_pred cccCCcccccCCcceeeeeehhccCCCCcceehhhHHHHHHHHhhCHHHHHHHhhcceeeEeecCCccc-----------
Confidence 9999999999999999999998876 9999999999999999999999999999888888754322210
Q ss_pred ccccCChhHHHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEEeecccccccCCCCCCCCCCccce
Q 019661 198 TFLTEDKSIAEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVT 277 (337)
Q Consensus 198 ~f~~~~~~~~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~fn~~~~~~~~~~~~~~~~~~~~~ 277 (337)
. .+- ....++|+|. -...|+-+-.|......- .-.+++
T Consensus 286 ~--------~~f-------------------------h~i~r~~vI~-ld~egr~~rIN~s~~~Rd--------s~fdvp 323 (407)
T KOG3888|consen 286 Y--------IEF-------------------------HNIWRAPVIC-LDDEGRVVRINFSNPQRD--------SIFDVP 323 (407)
T ss_pred c--------cch-------------------------hhhhcCceEE-EcccceEEEEecCCcccc--------ccccCC
Confidence 0 000 0001334343 223343332222111110 001111
Q ss_pred eCCCCCCCHHHHHHHHHHHhhhc--cccccCCCCEEEEecccccccCCCCCC----CceeeeeccC
Q 019661 278 FGNGKPLPADIVHDCLNILEEES--VAIPWQKGDVLLIDNWAVLHARRSFNP----PRRILASLCK 337 (337)
Q Consensus 278 ~gdg~~~~~~~l~~l~~~~~~~~--~~~~W~~GDili~DN~~v~HgR~~f~g----~R~~~~~~~~ 337 (337)
...-.+. +++|+.+.+++.++. ++|+.++||+++|||+|.+|||+.|+. .|.+..|.+|
T Consensus 324 ~e~v~~~-y~a~~~F~~~~~~~~n~~~fk~~~gdvv~FnN~RlLHgr~gy~~~~en~R~L~GaY~D 388 (407)
T KOG3888|consen 324 VEQVQPW-YRALKLFVELANSFSNQFRFKTPPGDVVTFNNLRLLHGRTGYEDTPENQRHLVGAYFD 388 (407)
T ss_pred HHHHHHH-HHHHHHHHHHHhCcccceEEECCCCCEEEEcceeeeccccccccCccccceeeeeEee
Confidence 1111222 688899999998876 999999999999999999999999954 6888887764
No 9
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.91 E-value=5.1e-24 Score=188.29 Aligned_cols=224 Identities=19% Similarity=0.259 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCccceeecCccccCCCCCCCCCcCcccCCCCCC
Q 019661 48 TQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVP 127 (337)
Q Consensus 48 ~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~i~~HtD~sy~~ 127 (337)
+.+..++. |.+||++++.|.+ ++.+.-+.+++++-+...+++|.. ....++-.-..-+++...++.|||++|..
T Consensus 126 ~l~sf~~n-lv~YGi~fvd~V~--pT~e~TEkl~~r~~pv~~TffG~m---W~Fsd~p~~~DTAYtkl~lg~HTD~TYF~ 199 (371)
T KOG3889|consen 126 SLQSFSKN-LVKYGIIFVDGVE--PTSEATEKLCQRLVPVHDTFFGQM---WVFSDEPAYEDTAYTKLELGPHTDGTYFD 199 (371)
T ss_pred HHHHHHHH-HHheeEEEEcCCC--chhHHHHHHHHHhhHHHHhhhhee---EEecCCCccccccceeeeecccCCCceec
Confidence 33444444 7899999999999 689999999999887765666632 11112111122245667899999999999
Q ss_pred CCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhHH
Q 019661 128 EFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIA 207 (337)
Q Consensus 128 ~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 207 (337)
.+|++++|+|++.+.+||+|.++|+..+.+.|.++.|+-.+.|++..+. +.+-.+.
T Consensus 200 ~~~GiQvfHCl~h~gtGG~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~--heYiE~~---------------------- 255 (371)
T KOG3889|consen 200 QTPGIQVFHCLTHAGTGGDTVLVDGFYCAEKLRNESPEDFEILCNVKIS--HEYIEGS---------------------- 255 (371)
T ss_pred cCCCceEEEeecccCCCCceEEEehHHHHHHHHhhChHhhhHhhcCccc--hhhhcCC----------------------
Confidence 9999999999999999999999999999999999999999999965443 2222110
Q ss_pred HhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceE--EeecccccccCCCCCCCCCCcc-ceeCCCCCC
Q 019661 208 EESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI--WFNSMVAAYTGWKDDRNDPVKA-VTFGNGKPL 284 (337)
Q Consensus 208 e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~--~fn~~~~~~~~~~~~~~~~~~~-~~~gdg~~~ 284 (337)
++.-......-|+|...|-+|+-+ -||.-.-+ +.+ +.......+
T Consensus 256 ----------------------ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRA-----------vfnt~p~ae~~~f 302 (371)
T KOG3889|consen 256 ----------------------GESHIHSVSLEPPVIERPSFGEITQIRFNPYDRA-----------VFNTLPAAETIKF 302 (371)
T ss_pred ----------------------CcccceeeccCCceEecCCCCceEEEEecccchh-----------hhccCCHHHHHHH
Confidence 000011111347788889888764 35642111 111 111111111
Q ss_pred CHHHHHHHHHHHhhh--ccccccCCCCEEEEecccccccCCCCCCCceeeeec
Q 019661 285 PADIVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASL 335 (337)
Q Consensus 285 ~~~~l~~l~~~~~~~--~~~~~W~~GDili~DN~~v~HgR~~f~g~R~~~~~~ 335 (337)
+++++.|..++.++ ++.++++||-|+++||+||+|||+.|+|.|.+..|.
T Consensus 303 -Y~a~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRvLHgRe~ftGyRqmcGcY 354 (371)
T KOG3889|consen 303 -YEAYRKLSKICRNPDNSIEIKLRPGSVIFIDNWRVLHGRESFTGYRQMCGCY 354 (371)
T ss_pred -HHHHHHHHHHhcCccceEEEEecCceEEEEeceeEecCcccccchhhhccee
Confidence 45666666666543 588999999999999999999999999999987764
No 10
>PRK02963 carbon starvation induced protein; Validated
Probab=99.86 E-value=1.5e-20 Score=172.87 Aligned_cols=194 Identities=16% Similarity=0.203 Sum_probs=130.1
Q ss_pred hcCEEEEeCCCCCC---CHHHHHHHHHHhCC-CCCCCccCCc----cceeecCccccCCCCC-CCCCcCcccCCCCCCCC
Q 019661 59 KAGSVLFRGFDDVK---TAKEFNDVVEAFGY-EELPYVGGAA----PRTNIVGRVFTANESP-PDQKIPFHHEMAQVPEF 129 (337)
Q Consensus 59 ~~G~vl~rg~~~i~---~~~~~~~~~~~~G~-~~~~~~g~~~----~r~~~~~~v~~~~~~~-~~~~i~~HtD~sy~~~~ 129 (337)
++|..+|--.+ ++ ++++++++++++|. +..+.+|+.- .+..+.....+.+... +...+++|||++|...|
T Consensus 85 ~~g~~~~~~~~-~~~~~~~~~~~~l~~~i~~~I~~t~fg~m~g~~ya~F~Vk~~~~~~~ya~~a~t~L~lHTD~pY~e~p 163 (316)
T PRK02963 85 AEGAFLINAVG-IDDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEI 163 (316)
T ss_pred ccCceEeeccc-CCccCCHHHHHHHHHHhhhccCCCCccccccceeeEEEEEecCCccchhhhhccCCCCcCCCCCccCC
Confidence 67877776555 54 78999999999998 5555555432 2333332211111111 12248999999999999
Q ss_pred CceEEeeeeec-CCCCcccccc--cHHHHHHHhhhhCcHHHHHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhH
Q 019661 130 PSKLFFFCEVE-PGSGGETPIV--LSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSI 206 (337)
Q Consensus 130 P~~~~l~c~~~-~~~GGeT~~~--d~~~vy~~L~~~~p~l~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 206 (337)
|++++|+|... ...||+|.|+ |+.++.+.|.+ +| |.+..+.|... ...
T Consensus 164 PGlQlLl~~~~~~~~GGeS~lVhvDGF~vAe~Lr~-~P-----Lt~~pV~~~~~--~~~--------------------- 214 (316)
T PRK02963 164 TDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHFFR-HP-----LARRPMRWAAP--PSK--------------------- 214 (316)
T ss_pred CCceeeeeeccCCCCCcCeeeEcCCcHHHHHHHHh-Cc-----CcCCceeeeec--CCC---------------------
Confidence 99976776665 4789999997 99999999996 77 77777766421 100
Q ss_pred HHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceE-EeecccccccCCCCCCCCCCccceeCCCCCCC
Q 019661 207 AEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI-WFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLP 285 (337)
Q Consensus 207 ~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~-~fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~ 285 (337)
. ......+|+|..++ .|+.. .||.... .| . +...
T Consensus 215 ------------------------~--~~~~~~~PVI~lD~-~G~l~ir~nd~~~-----------~P----~---~~~~ 249 (316)
T PRK02963 215 ------------------------N--VSKDVFHPVFDVDQ-QGRPVMRYIDQFV-----------QP----K---DFEE 249 (316)
T ss_pred ------------------------c--cceeeecceEEECC-CCCEEEEEcCCCC-----------CC----h---HHHH
Confidence 0 01122578888775 68775 3442110 00 0 1112
Q ss_pred HHHHHHHHHHHhhhc--cccccCCCCEEEEecccccccCCCCCC
Q 019661 286 ADIVHDCLNILEEES--VAIPWQKGDVLLIDNWAVLHARRSFNP 327 (337)
Q Consensus 286 ~~~l~~l~~~~~~~~--~~~~W~~GDili~DN~~v~HgR~~f~g 327 (337)
...+..+.+.+.++. +.++++|||++++||+|+||||++|++
T Consensus 250 ~~Y~~~f~~~L~~p~~~~~fkL~pGd~vvfDN~RVLHGR~aF~~ 293 (316)
T PRK02963 250 GVWLSELSDALETSKGILSVPVPVGKFLLINNLFWLHGRDRFTP 293 (316)
T ss_pred HHHHHHHHHHHhCchhEEEEecCCceEEEEeCeEEeeCCCCcCC
Confidence 334778888887654 888999999999999999999999963
No 11
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=98.37 E-value=3.3e-06 Score=75.34 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=87.5
Q ss_pred hcCEEEEeCCCCCC---CHHHHHHHHHHhC----CCCCC-CccCCccceeecCccccCCC--CCCCCCcCcccCCCCCCC
Q 019661 59 KAGSVLFRGFDDVK---TAKEFNDVVEAFG----YEELP-YVGGAAPRTNIVGRVFTANE--SPPDQKIPFHHEMAQVPE 128 (337)
Q Consensus 59 ~~G~vl~rg~~~i~---~~~~~~~~~~~~G----~~~~~-~~g~~~~r~~~~~~v~~~~~--~~~~~~i~~HtD~sy~~~ 128 (337)
++|..+|--.. ++ .++++++|+.+++ .+-++ -.|....|..+... -.|.. ..+...+.+|||++|..+
T Consensus 72 ~~G~f~i~~~g-~~~~~q~d~~Vk~sTAi~HLiG~pNfDaMsGkYYARF~Vkn~-DnSDSYLRqa~r~meLHnDGTyV~E 149 (297)
T PF08943_consen 72 NTGAFLIGPEG-LDQVEQADDMVKFSTAISHLIGRPNFDAMSGKYYARFVVKNT-DNSDSYLRQAYRRMELHNDGTYVDE 149 (297)
T ss_dssp T--EEEEEETT---SGGGHHHHHHHHHHHHHHHEEE---TTTSSSSEEEEEE---------TT-TT--EEEE-S-TTSSS
T ss_pred ccCceEecccc-ccchhchhhhHhHHHHHHHHhCCCchhhcCceeEEEEEEecC-CCchhhhhcccceeeeecCCceecc
Confidence 67888887655 43 4688888888864 33332 23434447666442 12222 234567889999999999
Q ss_pred CCceEEee-eeecCCCCcccccccHHHHHHHhhhhCcHHH-HHHHhcceEEEEEcCCCCCCCCCCCCCcccccccCChhH
Q 019661 129 FPSKLFFF-CEVEPGSGGETPIVLSHIVYERMKHKYPDFV-EQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSI 206 (337)
Q Consensus 129 ~P~~~~l~-c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~-~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 206 (337)
.-++++.. ..+.-..||+|.+-..-. |++|. .+. .-|.++.+.|. .|.+ | .
T Consensus 150 ~TD~vLMmKidEqN~~GG~S~lLHLDD-We~ld----~f~~hplak~~~~w~--aP~S-------------------K-N 202 (297)
T PF08943_consen 150 RTDWVLMMKIDEQNMEGGESLLLHLDD-WEDLD----KFYNHPLAKQPFVWG--APPS-------------------K-N 202 (297)
T ss_dssp ---EEEEEEEEEES--B--EEEEEGGG--TTHH----HHHTSGGGGS-EEE----SS--------------------T-T
T ss_pred ccceeeeeeehhhhccCcceeeeeccc-HHHHH----HHhcCcccccceeec--CCCC-------------------c-c
Confidence 99986665 344556899999864211 33332 222 23444444442 1211 0 0
Q ss_pred HHhhchhhHHHHHHcCCcEEEecCCceEEEEeeeCeEEecCCCCceEE-eecccccccCCCCCCCCCCccceeCCCCCC-
Q 019661 207 AEESSIESFNRAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIW-FNSMVAAYTGWKDDRNDPVKAVTFGNGKPL- 284 (337)
Q Consensus 207 ~e~~~~~~~~~~~~~g~~~~w~~~g~~~~~~~~~P~v~~hP~tG~~~~-fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~- 284 (337)
+ .....||++-.-...|+|+. |.--.. ....+
T Consensus 203 v---------------------------~~~v~hpvFF~~d~~g~P~m~fIDQF~-------------------qP~n~e 236 (297)
T PF08943_consen 203 V---------------------------SYDVEHPVFFEEDSNGKPHMSFIDQFV-------------------QPKNME 236 (297)
T ss_dssp -------------------------------EEE-S-EEE-TTS-EEE---TTTE-------------------E--SHH
T ss_pred c---------------------------cceeeccccccccCCCCeeEEEeeccC-------------------CCCcHH
Confidence 1 11125677443445678864 321100 00111
Q ss_pred CHHHHHHHHHHHhhh--ccccccCCCCEEEEecccccccCCCCCC
Q 019661 285 PADIVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSFNP 327 (337)
Q Consensus 285 ~~~~l~~l~~~~~~~--~~~~~W~~GDili~DN~~v~HgR~~f~g 327 (337)
.-..|..|.+.++.. ...++.-+|++|+++|+..+|||.+|+.
T Consensus 237 eg~~L~~ls~slE~s~~~~~v~vpvG~~lv~NN~fwLHGR~~F~~ 281 (297)
T PF08943_consen 237 EGLYLNELSESLENSKNKFSVPVPVGSFLVINNHFWLHGRDKFEP 281 (297)
T ss_dssp HHHHHHHHHHHHHT-TT-EEE---TT-EEEEETTTEEEEE--B--
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCcEEEEeeEEEEeccCCCCC
Confidence 124678888888754 5888999999999999999999999964
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=69.03 E-value=1.8 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.4
Q ss_pred cCCCCEEEEecccccccCCCC-CCCceeeeecc
Q 019661 305 WQKGDVLLIDNWAVLHARRSF-NPPRRILASLC 336 (337)
Q Consensus 305 W~~GDili~DN~~v~HgR~~f-~g~R~~~~~~~ 336 (337)
-++|+++++++..++|+.++. .+.||+.+..|
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~ 98 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTFW 98 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEEE
Confidence 789999999999999999998 65666655443
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=63.03 E-value=7 Score=33.25 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred cccccCCCCEEEEecc--cccccCCCCC-CCceeeeecc
Q 019661 301 VAIPWQKGDVLLIDNW--AVLHARRSFN-PPRRILASLC 336 (337)
Q Consensus 301 ~~~~W~~GDili~DN~--~v~HgR~~f~-g~R~~~~~~~ 336 (337)
..+.=++|++|+|.|. +.+|+.++.. |.|-.+..|.
T Consensus 139 ~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 139 ATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred eEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEE
Confidence 4556689999999998 7999999985 7877776653
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=57.03 E-value=9.8 Score=32.58 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=25.2
Q ss_pred ccccccCCCCEEEEecccccccCCCCC
Q 019661 300 SVAIPWQKGDVLLIDNWAVLHARRSFN 326 (337)
Q Consensus 300 ~~~~~W~~GDili~DN~~v~HgR~~f~ 326 (337)
.+++..++||||+.+=.+.+||-++.+
T Consensus 127 g~~~~~~~GtVl~~~~~~~~Hgvtpv~ 153 (171)
T PF12851_consen 127 GVAFAYQPGTVLIFCAKRELHGVTPVE 153 (171)
T ss_pred CEEEecCCCcEEEEcccceeeecCccc
Confidence 488899999999999999999999987
No 15
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.25 E-value=9 Score=32.36 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=10.8
Q ss_pred cccCCCCEEEEe
Q 019661 303 IPWQKGDVLLID 314 (337)
Q Consensus 303 ~~W~~GDili~D 314 (337)
=.||+||||.|+
T Consensus 105 ~~~q~GDIVtw~ 116 (164)
T PF06940_consen 105 EDWQPGDIVTWR 116 (164)
T ss_pred hhcCCCCEEEEe
Confidence 489999999996
No 16
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=14 Score=32.12 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.6
Q ss_pred cccccCCCCEEEEecccccccCCCCC
Q 019661 301 VAIPWQKGDVLLIDNWAVLHARRSFN 326 (337)
Q Consensus 301 ~~~~W~~GDili~DN~~v~HgR~~f~ 326 (337)
+.--+.+|++++.|..+++|+.+++.
T Consensus 175 f~kvl~pGe~~~l~Dh~~~H~~tpi~ 200 (226)
T COG4340 175 FFKVLAPGEAVFLDDHRVLHGVTPIV 200 (226)
T ss_pred eEEeccCCcEEEeccchhccccccee
Confidence 44467899999999999999999984
No 17
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=44.93 E-value=23 Score=29.99 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=30.0
Q ss_pred CCCCcCcccCCCCCCC--CCceEEeeeeecCCCCcccccccHH
Q 019661 113 PDQKIPFHHEMAQVPE--FPSKLFFFCEVEPGSGGETPIVLSH 153 (337)
Q Consensus 113 ~~~~i~~HtD~sy~~~--~P~~~~l~c~~~~~~GGeT~~~d~~ 153 (337)
......+|.|...... .-.+++++.+..+..||+|.|-+..
T Consensus 92 ~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 92 PGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred CCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 3456789999886542 2356777777778899999998753
No 18
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=43.83 E-value=25 Score=31.56 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCCCCcCcccCCCCCCCC-------CceEEeeeeecCC--CCcccccccH
Q 019661 112 PPDQKIPFHHEMAQVPEF-------PSKLFFFCEVEPG--SGGETPIVLS 152 (337)
Q Consensus 112 ~~~~~i~~HtD~sy~~~~-------P~~~~l~c~~~~~--~GGeT~~~d~ 152 (337)
.......+|.|.++...+ -.++++..+..|. .||||.|-|.
T Consensus 88 ~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 88 EGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred CCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 345677899999987532 1456666777665 7999998764
No 19
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=40.32 E-value=13 Score=32.59 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=22.5
Q ss_pred cccccCCCCEEEEecccccccCCCCC-------CCceeee
Q 019661 301 VAIPWQKGDVLLIDNWAVLHARRSFN-------PPRRILA 333 (337)
Q Consensus 301 ~~~~W~~GDili~DN~~v~HgR~~f~-------g~R~~~~ 333 (337)
.....++||.+++|-.+++|+.+|-. |.|-+++
T Consensus 153 ~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlv 192 (195)
T PF10014_consen 153 FFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLV 192 (195)
T ss_dssp EE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEE
T ss_pred EEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEE
Confidence 34466899999999999999998852 4577776
No 20
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=38.02 E-value=18 Score=34.52 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred ccCCCCEEEEecccccccCCC
Q 019661 304 PWQKGDVLLIDNWAVLHARRS 324 (337)
Q Consensus 304 ~W~~GDili~DN~~v~HgR~~ 324 (337)
-+++||+|+++|.+|+-+|--
T Consensus 48 ~l~~gDlLV~NdTkVipARL~ 68 (344)
T TIGR00113 48 FFNEGDLLVLNNTKVIPARLF 68 (344)
T ss_pred hcCCCCEEEEeCcEEeeeeEE
Confidence 468999999999999988854
No 21
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=37.34 E-value=25 Score=34.51 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCceEEeeeeecCCCCcccccccHHHHHHHhhhhCcHHHHHHH
Q 019661 128 EFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLE 171 (337)
Q Consensus 128 ~~P~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~l~~~L~ 171 (337)
.-|+.++|||++||. ....-|-..+++.|.+++|.++=+|.
T Consensus 452 e~pd~vffc~iepps---~~k~~d~ehale~lqredpslkir~d 492 (753)
T KOG0464|consen 452 EIPDAVFFCCIEPPS---LRKLNDFEHALECLQREDPSLKIRFD 492 (753)
T ss_pred cCCCceEEEeccCcc---cccchhHHHHHHHHhccCCceeEEec
Confidence 578999999999985 35567788889999988898875554
No 22
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=33.22 E-value=25 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.3
Q ss_pred ccCCCCEEEEecccccccCCC
Q 019661 304 PWQKGDVLLIDNWAVLHARRS 324 (337)
Q Consensus 304 ~W~~GDili~DN~~v~HgR~~ 324 (337)
-+++||+|+++|.+|+-+|--
T Consensus 49 ~l~~gDlLV~NdTkVipARL~ 69 (342)
T PRK00147 49 YLNPGDLLVFNDTRVIPARLF 69 (342)
T ss_pred hcCCCCEEEEEcCeeeeeeEE
Confidence 468999999999999988854
No 23
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=33.02 E-value=18 Score=34.49 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=16.5
Q ss_pred ccCCCCEEEEecccccccCCCC
Q 019661 304 PWQKGDVLLIDNWAVLHARRSF 325 (337)
Q Consensus 304 ~W~~GDili~DN~~v~HgR~~f 325 (337)
-+++||+|+++|.+|+.+|.-.
T Consensus 48 ~L~~GDlLV~NdTkVipARL~g 69 (341)
T PF02547_consen 48 YLRPGDLLVFNDTKVIPARLFG 69 (341)
T ss_dssp G--TTEEEEEEEEEE-SEEEEE
T ss_pred hhCCCCEEEEeCCEEEeeEEEE
Confidence 4679999999999999988543
No 24
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=32.69 E-value=25 Score=33.67 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.2
Q ss_pred ccCCCCEEEEecccccccCCCC
Q 019661 304 PWQKGDVLLIDNWAVLHARRSF 325 (337)
Q Consensus 304 ~W~~GDili~DN~~v~HgR~~f 325 (337)
-+++||+|+++|.+|+-+|--.
T Consensus 46 ~L~~GDlLV~NdTkVipARL~g 67 (366)
T PRK01424 46 YLKEGDLLVFNNSKVIKAKLNL 67 (366)
T ss_pred hcCCCCEEEEeccEEeeeEEEc
Confidence 4689999999999999998653
No 25
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=32.35 E-value=67 Score=29.55 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhC
Q 019661 52 FLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFG 85 (337)
Q Consensus 52 ~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G 85 (337)
+..+.+.+.|+|+++|+= +.++..++-+.+-
T Consensus 20 eqi~~f~~dGyvvl~~vl---s~eev~~lr~~i~ 50 (277)
T TIGR02408 20 KQLQSYERDGFLLLENLF---SDDEVAALLAEVE 50 (277)
T ss_pred HHHHHHHHCCEEECcccC---CHHHHHHHHHHHH
Confidence 344469999999999964 6777777776653
No 26
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=31.75 E-value=28 Score=29.40 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=20.1
Q ss_pred cccccCCCCEEEEecccccccC-CCCCCCceeee
Q 019661 301 VAIPWQKGDVLLIDNWAVLHAR-RSFNPPRRILA 333 (337)
Q Consensus 301 ~~~~W~~GDili~DN~~v~HgR-~~f~g~R~~~~ 333 (337)
-.+.|++|.++++|+. ..|.. +.-+.+|.+|+
T Consensus 124 ~~~~w~~G~~~~fD~s-~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 124 ETRHWREGECWVFDDS-FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEB--CTEEEEE-TT-S-EEEEESSSS-EEEEE
T ss_pred eEEEeccCcEEEEeCC-EEEEEEeCCCCCEEEEE
Confidence 4579999999999997 56755 43456788776
No 27
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=31.70 E-value=37 Score=28.69 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=21.2
Q ss_pred hccccccCCCCEEEEecccccccCCC-CC-CCce
Q 019661 299 ESVAIPWQKGDVLLIDNWAVLHARRS-FN-PPRR 330 (337)
Q Consensus 299 ~~~~~~W~~GDili~DN~~v~HgR~~-f~-g~R~ 330 (337)
..+....++||++|+|.+ ++||..+ -+ +.|+
T Consensus 178 ~~~~~~~~~Gdvl~~~~~-~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSR-LIHGSGPNTSDDPRR 210 (211)
T ss_dssp GCEEE-BSTTEEEEEETT-SEEEEE-B-SSSTEE
T ss_pred ceEEeecCCCeEEEEcCC-ccccCCCCCCcCcCC
Confidence 447788999999999985 6798765 33 3554
No 28
>PHA02813 hypothetical protein; Provisional
Probab=29.25 E-value=45 Score=31.87 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=29.7
Q ss_pred CCCCCcCcccCCCCCCC--CCceEEeeeeecCCCCcccccccH
Q 019661 112 PPDQKIPFHHEMAQVPE--FPSKLFFFCEVEPGSGGETPIVLS 152 (337)
Q Consensus 112 ~~~~~i~~HtD~sy~~~--~P~~~~l~c~~~~~~GGeT~~~d~ 152 (337)
...+.+.+|.|+.|... --.+.+|.=+..+..||+|.|...
T Consensus 102 ~kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 102 EKGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred CCCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcC
Confidence 34567789999988653 233455666677789999999976
No 29
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=34 Score=32.51 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.6
Q ss_pred ccCCCCEEEEecccccccC
Q 019661 304 PWQKGDVLLIDNWAVLHAR 322 (337)
Q Consensus 304 ~W~~GDili~DN~~v~HgR 322 (337)
-+++||+++.+|.+|+=+|
T Consensus 49 yl~~GD~LVfNdTrVIpAR 67 (348)
T COG0809 49 YLNPGDLLVFNDTRVIPAR 67 (348)
T ss_pred hcCCCCEEEEecCeeechh
Confidence 4689999999999998666
No 30
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=28.40 E-value=1.9e+02 Score=22.13 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=23.8
Q ss_pred HHhhHHHHHHHHHhcCEEEEeCCCCCCCHHHH
Q 019661 46 VRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEF 77 (337)
Q Consensus 46 ~~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~ 77 (337)
..+..+.|.+++.++|+..+.+.. + +.+..
T Consensus 13 ~~~~~~~l~~A~~~~GFf~l~nhG-i-~~~l~ 42 (116)
T PF14226_consen 13 REEVAEQLRDACEEWGFFYLVNHG-I-PQELI 42 (116)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESSS-S-SHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEeccc-c-cchhh
Confidence 345678899999999999999998 7 44433
No 31
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=25.72 E-value=46 Score=25.40 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred hccccccCCCCEEEEecccccccCCCCCC-Cceeeeec
Q 019661 299 ESVAIPWQKGDVLLIDNWAVLHARRSFNP-PRRILASL 335 (337)
Q Consensus 299 ~~~~~~W~~GDili~DN~~v~HgR~~f~g-~R~~~~~~ 335 (337)
..+.++=++||++|+-.+ +.|+-.++.+ ..|+-+|+
T Consensus 64 ~~~~~~p~~G~lvlFPs~-l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSW-LWHGVPPNNSDEERISISF 100 (101)
T ss_dssp SEEEE---TTEEEEEETT-SEEEE----SSS-EEEEEE
T ss_pred ceEEeCCCCCEEEEeCCC-CEEeccCcCCCCCEEEEEc
Confidence 347778899999999965 6799999865 47776653
No 32
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=25.38 E-value=22 Score=25.95 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=26.9
Q ss_pred ceEEeeeeecCCCCcccccccHHHHHHHhhhhCcH
Q 019661 131 SKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPD 165 (337)
Q Consensus 131 ~~~~l~c~~~~~~GGeT~~~d~~~vy~~L~~~~p~ 165 (337)
.=++++|-++|..|=+-.+-+..+|++.|.+..|.
T Consensus 7 EqlF~~~FR~a~~~Ee~e~lsa~~If~~L~k~~~~ 41 (73)
T PF12990_consen 7 EQLFHCCFRPAEEGEEGEWLSAAEIFERLQKKSPA 41 (73)
T ss_pred HHHHHHHccCCCCCccceeecHHHHHHHHHHhCcc
Confidence 34566788988877677788899999999876554
No 33
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=24.28 E-value=1e+02 Score=21.82 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=12.1
Q ss_pred CCCCcCcccCCCCCCC
Q 019661 113 PDQKIPFHHEMAQVPE 128 (337)
Q Consensus 113 ~~~~i~~HtD~sy~~~ 128 (337)
....+.||.|......
T Consensus 20 ~g~~~~~H~D~~~~~~ 35 (70)
T PF13661_consen 20 RGDFFGWHVDADPSSS 35 (70)
T ss_pred CCCEeeeeEcCCcccc
Confidence 3567889999987655
No 34
>PF07892 DUF1667: Protein of unknown function (DUF1667); InterPro: IPR012460 Hypothetical archaeal and bacterial proteins make up this family. A few proteins are annotated as being potential metal-binding proteins, and in fact the members of this family have four highly conserved cysteine residues, but no further literature evidence was found in this regard. ; PDB: 2JOV_A.
Probab=22.07 E-value=68 Score=23.99 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhccccccCCCCEEEEe
Q 019661 280 NGKPLPADIVHDCLNILEEESVAIPWQKGDVLLID 314 (337)
Q Consensus 280 dg~~~~~~~l~~l~~~~~~~~~~~~W~~GDili~D 314 (337)
-..++|.+.+.++.+.+.+..+.-+.+.||+++=|
T Consensus 36 T~~pIPk~~i~e~m~~i~~i~v~aPV~~GdVi~~n 70 (82)
T PF07892_consen 36 TSKPIPKEKIFEVMEEIKKIEVKAPVKIGDVIVKN 70 (82)
T ss_dssp EEEEE-HHHHHHHHHHHTT-EE-----SSEEEEES
T ss_pred cCCCCCHHHHHHHHHHHhCCEEcCCccCCCEEEec
Confidence 34688899999888888888899999999998865
No 35
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.32 E-value=78 Score=29.55 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHhcCEEEEeCCCCCCCHHHHHHHHHHhC
Q 019661 47 RTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFG 85 (337)
Q Consensus 47 ~~~~~~L~~~l~~~G~vl~rg~~~i~~~~~~~~~~~~~G 85 (337)
....+.+++.+..+|.++++.+- -.+.+.+..+..+|=
T Consensus 9 ~~~~~q~~~~~~~~Gy~Vve~i~-d~~~~~la~~r~af~ 46 (299)
T COG5285 9 SSSYEQIQDAIDEFGYTVVEDVL-DTSADSLAAFRAAFY 46 (299)
T ss_pred hhhHHHHHHHHhhhhhhhHHhHh-hhhhhHHHHHHHHhh
Confidence 34467888999999999999975 123566666666653
No 36
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.20 E-value=54 Score=24.98 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=33.5
Q ss_pred EEeeeeecCCC-CcccccccHHHHHHHhhhhCcHHHHHHHhcceE
Q 019661 133 LFFFCEVEPGS-GGETPIVLSHIVYERMKHKYPDFVEQLEQHGLI 176 (337)
Q Consensus 133 ~~l~c~~~~~~-GGeT~~~d~~~vy~~L~~~~p~l~~~L~~~~v~ 176 (337)
++|-|-....- .|--+|-|.-++|++|.++--+-++.|+++|+.
T Consensus 46 v~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 46 VSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444433 488899999999999998888888899988864
No 37
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=21.04 E-value=57 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=10.4
Q ss_pred ccCCCCEEEEec
Q 019661 304 PWQKGDVLLIDN 315 (337)
Q Consensus 304 ~W~~GDili~DN 315 (337)
..+||||+++.+
T Consensus 51 ~~~pGDlif~~~ 62 (105)
T PF00877_consen 51 ELQPGDLIFFKG 62 (105)
T ss_dssp G-TTTEEEEEEG
T ss_pred cCCcccEEEEeC
Confidence 789999999998
No 38
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=20.35 E-value=75 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=26.9
Q ss_pred cccccCCCCEEEEecccccccCCCC-CCCceeeeec
Q 019661 301 VAIPWQKGDVLLIDNWAVLHARRSF-NPPRRILASL 335 (337)
Q Consensus 301 ~~~~W~~GDili~DN~~v~HgR~~f-~g~R~~~~~~ 335 (337)
..++...||+|++.+. .+|..+|- .|.|-.++.|
T Consensus 141 ~~Vkp~aG~~vlfps~-~lH~v~pVt~G~R~~~~~W 175 (226)
T PRK05467 141 HRVKLPAGDLVLYPST-SLHRVTPVTRGVRVASFFW 175 (226)
T ss_pred EEEecCCCeEEEECCC-CceeeeeccCccEEEEEec
Confidence 4567789999999985 77999986 5777777665
No 39
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=20.15 E-value=77 Score=20.08 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=11.6
Q ss_pred ccccccCCCCEEEE
Q 019661 300 SVAIPWQKGDVLLI 313 (337)
Q Consensus 300 ~~~~~W~~GDili~ 313 (337)
.....|++||-+|+
T Consensus 11 ~tPanW~pGd~~iv 24 (40)
T PF10417_consen 11 ATPANWKPGDDVIV 24 (40)
T ss_dssp BBCTTTCTTSGEBE
T ss_pred ccCcCCCCCCCeEc
Confidence 47779999998885
No 40
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=20.08 E-value=54 Score=14.39 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=5.2
Q ss_pred cccccCCC
Q 019661 301 VAIPWQKG 308 (337)
Q Consensus 301 ~~~~W~~G 308 (337)
+++.|.||
T Consensus 3 wS~~w~PG 10 (10)
T PF00446_consen 3 WSHGWKPG 10 (10)
T ss_pred cccccCCC
Confidence 45667776
Done!