BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019662
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 160 PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTP-ESEILTIDVKPGWKKGTKITFP 218
PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKITFP
Sbjct: 12 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 71
Query: 219 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 278
+G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDGR +
Sbjct: 72 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 131
Query: 279 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 335
+ D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 132 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 160 PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTP-ESEILTIDVKPGWKKGTKITFP 218
PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKITFP
Sbjct: 5 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 64
Query: 219 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 278
+G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDGR +
Sbjct: 65 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 124
Query: 279 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 335
+ D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 125 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 160 PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTP-ESEILTIDVKPGWKKGTKITFP 218
PPV L SLEE+YSG T+KMKIS ++ +G+ E +ILTI+VK GWK+GTKITFP
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 219 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 278
+G++ N +PAD+VFV+ +KPH+++KRD +D+I ++SL EAL G +V++ TLDGR +
Sbjct: 63 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 279 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 335
+ D+I PG +PGEG+P+ + P RGDL I+FEV FP ++ R L++ L
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 163 ESKLPCSLEELYSGSTRKMKISRT-VVDANGRQTPESEILTIDVKPGWKKGTKITFPDKG 221
E L +LEELY G +K+K++R ++ R E I+ +++KPGWK GTK+T+ +G
Sbjct: 7 EVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRN--EENIVEVEIKPGWKDGTKLTYSGEG 64
Query: 222 N-EQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 280
+ E P P DLV +I K H + RD LI + L AL G + + TLD R+L I
Sbjct: 65 DQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI 124
Query: 281 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 335
+ +I++P +P EG PI +PG +GDL ++F++ FP LTPEQ+ +K AL
Sbjct: 125 PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 5/171 (2%)
Query: 162 VESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKG 221
V+ LP SLE+L+ G + KI R +T + I +KPGWK GTKIT+ ++G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQ----IDIQLKPGWKAGTKITYKNQG 58
Query: 222 NEQPNQ-LPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 280
+ P L FVI EK H +KRD +DLI +S E+L G S ++ T+DGR L +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 281 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGL 331
+ + P PG+GMP + P RG+L +K++V +P L Q+ +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 5/171 (2%)
Query: 162 VESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKG 221
V+ LP SLE+L+ G + KI R +T + I +KPGWK GTKIT+ ++G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQ----IDIQLKPGWKAGTKITYKNQG 58
Query: 222 NEQPNQ-LPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 280
+ P L FVI EK H +KRD +DLI +S E+L G S ++ T+DGR L +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 281 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGL 331
+ + P PG+GMP + P RG+L +K++V +P L Q+ +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 58/68 (85%)
Query: 3 MDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQK 62
+DYY +L V + A+ + +KK+YRKLA+KWHPDKNP +K+EAE RFKQ++EAYEVLSD +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 63 RAIYDQYG 70
R IYD+YG
Sbjct: 69 RDIYDRYG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 59/70 (84%)
Query: 5 YYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRA 64
YY IL V ++A+ DD+KK+YR+ A++WHPDKNP++K+ AE +FK+++EAYEVLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 65 IYDQYGEEGL 74
IYD+YG EGL
Sbjct: 64 IYDRYGREGL 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 3 MDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQK 62
DYY IL V+K A E +++K+Y++LAMK+HPD+N DK EAEA+FK+I EAYEVL+D QK
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQK 61
Query: 63 RAIYDQYGEEGLK 75
RA YDQYG +
Sbjct: 62 RAAYDQYGHAAFE 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 3 MDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQK 62
DYY IL V+K A E +++K+Y++LAMK+HPD+N DK EAEA+FK+I EAYEVL+D QK
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQK 61
Query: 63 RAIYDQYG 70
RA YDQYG
Sbjct: 62 RAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
DYY IL V+K A E +++K+Y++LAMK+HPD+N DK EAEA+FK+I EAYEVL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AIYDQYGEEGLK 75
A YDQYG +
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 2 GM-DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDP 60
GM +YY +L V +A+ +D+KK+YRKLA++WHPDKNP++K+EAE +FK +SEAYEVLSD
Sbjct: 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 61 QKRAIYDQYG 70
+KR++YD+ G
Sbjct: 67 KKRSLYDRAG 76
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 190 ANGRQTP-ESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDS 248
NG++ E +IL + V+PG K G +I F + ++ P+ +P D+VF++ E+PH +KRD
Sbjct: 102 CNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDG 161
Query: 249 NDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVT--DIISPGFELGIPGEGMPIAREPG 306
+DL+ ++ L A+ G +L + G L + + ++I+PG I G+GMPI + G
Sbjct: 162 DDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-G 220
Query: 307 NRGDLRIKFEVKFP 320
G+L IKF +K P
Sbjct: 221 GYGNLIIKFTIKDP 234
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 2 GMDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQ 61
G Y++L ++KNAT DD+KKSYRKLA+K+HPDKNP D EA +FK+I+ A+ +L+D
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNP-DNPEAADKFKEINNAHAILTDAT 74
Query: 62 KRAIYDQYGEEGL 74
KR IYD+YG GL
Sbjct: 75 KRNIYDKYGSLGL 87
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 5 YYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRA 64
YY++L V NAT+++LKK+YRKLA+K+HPDKNPN+ + +FKQIS+AYEVLSD +KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 63
Query: 65 IYDQYGEE 72
+YD+ GE+
Sbjct: 64 LYDKGGEQ 71
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 2 GMDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQ 61
G DYY L + + A+++++K++YR+ A+++HPDKN AE +FK+I+EAY+VLSDP+
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPR 59
Query: 62 KRAIYDQYGEEGLK 75
KR I+D+YGEEGLK
Sbjct: 60 KREIFDRYGEEGLK 73
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 55/68 (80%), Gaps = 4/68 (5%)
Query: 5 YYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRA 64
YY++L V +A++++LKK+YRK+A+K+HPDKNP+ +FKQIS+AYEVLSD +KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEKKRQ 65
Query: 65 IYDQYGEE 72
IYDQ GEE
Sbjct: 66 IYDQGGEE 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 6 YNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRAI 65
Y++L V+ +A E +LKK YRK A+K+HPDK D + +FK+ISEA+E+L+DPQKR I
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQKREI 66
Query: 66 YDQYGEEGLK 75
YDQYG E +
Sbjct: 67 YDQYGLEAAR 76
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
DYY IL V++ A+++DLKK+YR+LA+K+HPDK N A FK I AY VLS+P+KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK--NHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 64 AIYDQYG 70
YDQ+G
Sbjct: 66 KQYDQFG 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 1 MGMDYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDP 60
+ D Y +L V++ A++ D+KK+Y+KLA +WHPDKN + AE RF QIS+AYE+LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNE 72
Query: 61 QKRAIYDQYG 70
+KR YD YG
Sbjct: 73 EKRTNYDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
DYY IL V +NA++ ++KK+Y +LA K+HPD N +D K A+ +F Q++EAYEVLSD KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKR 66
Query: 64 AIYDQYG 70
YD YG
Sbjct: 67 KQYDAYG 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 5 YYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRA 64
YY+IL V K+A+E +KK++ KLAMK+HPDKN + +AEA+F++I+EAYE LSD +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK 66
Query: 65 IYDQYGEEGL 74
YD G
Sbjct: 67 EYDTLGHSAF 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
++Y++L V+K A+ +++++++KLA+K HPDKNPN+ A F +I+ AYEVL D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLR 80
Query: 64 AIYDQYGEEGLKD 76
YD+YGE+GL+D
Sbjct: 81 KKYDKYGEKGLED 93
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
++Y++L V+K A+ +++++++KLA+K HPDKNPN+ A F +I+ AYEVL D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLR 61
Query: 64 AIYDQYGEEGLKD 76
YD+YGE+GL+D
Sbjct: 62 KKYDKYGEKGLED 74
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPD--KNPNDKKEAEARFKQISEAYEVLSDPQ 61
DYY I+ V +K +YR+LA K+HPD K P+ AEARFK+++EA+EVLSD Q
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVLSDEQ 61
Query: 62 KRAIYDQ 68
+RA YDQ
Sbjct: 62 RRAEYDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
DYY IL V +K +YR+LA K+HPD + + +AEA+FK ++EA+EVL D Q+R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRR 86
Query: 64 AIYDQ 68
A YDQ
Sbjct: 87 AEYDQ 91
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPD--KNPNDKKEAEARFKQISEAYEVLSDPQ 61
DYY IL V +NA + ++ K+YRKLA++WHPD +N +KK+AE +F I+ A EVLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAIYD 67
R +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPD--KNPNDKKEAEARFKQISEAYEVLSDPQ 61
DYY IL V +NA + ++ K+YRKLA++WHPD +N +KK+AE +F I+ A EVLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAIYD 67
R +D
Sbjct: 443 MRKKFD 448
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 244 YKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVT--DIISPGFELGIPGEGMPI 301
+KRD +DL+ ++ L A+ G +L + G L + + ++I+PG I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 302 AREPGNRGDLRIKFEVKFP 320
+ G G+L IKF +KFP
Sbjct: 62 PKY-GGYGNLIIKFTIKFP 79
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 6 YNILKVNKNA-TEDDLKKSYRKLAMKWHPD--KNPNDKKEAEARFKQISEAYEVLSDPQK 62
Y++L+VN+ + L K+YR LA K HPD KN +K AE RF+ I+ AYE L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 63 RAIYDQY 69
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPND-----KKEAEARFKQISEAYEVLS 58
D+Y+IL + +A DLK+ Y+KL + +HPDK D +E +F +I +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 59 DPQKRAIYD-QYGEEGLKDMPP 79
+ + + YD Q E+ L+++ P
Sbjct: 71 NEETKREYDLQRCEDDLRNVGP 92
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPND-----KKEAEARFKQISEAYEVLS 58
D+Y+IL + +A DLK+ Y+KL + +HPDK D +E +F +I +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 59 DPQKRAIYD 67
+ + + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 6 YNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRAI 65
Y++L V AT+ +K +Y + +HPD+N + AE RF +IS+AY VL R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSATLRRK 78
Query: 66 YDQ 68
YD+
Sbjct: 79 YDR 81
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKR 63
DYY +L ++ ++ + + ++ A++ HPDK+P + K E F+++ +A E+L++ + R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNEESR 79
Query: 64 AIYDQY 69
A YD +
Sbjct: 80 ARYDHW 85
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 17 EDDLKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRAIYDQYGEEG 73
E + KK R+L +KWHPDKNP + A FK + L +K+A DQ +
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNADRA 83
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 4 DYYNILKVNKNATEDDLKKSYRKLAMKWHPDK 35
D +++L V A+ D++ K+YRKLA+ HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 20 LKKSYRKLAMKWHPDK----NPNDKKEAEARFKQISEAYEVLSDPQKRAIY 66
L +R L ++HPD + D+ A + QI++AY+ L DP +RA Y
Sbjct: 23 LSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEY 73
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 20 LKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRAIY 66
L+K YR+L + HPD +++ +++AY L DP +R+ Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 20 LKKSYRKLAMKWHPDKNPNDKKEAEARFKQISEAYEVLSDPQKRAIY 66
L+K YR+L + HPD +++ +++AY L DP +R+ Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 69
>pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
pdb|3U6U|C Chain C, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
Length = 269
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 187 VVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVF------------ 234
VV G + E + D WK+G K+ G+ + N++ L
Sbjct: 3 VVKVGGAEGINYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQV 62
Query: 235 --VIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGR 276
+ D K ++++ L+ V L + G ++ L LDGR
Sbjct: 63 SRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGR 106
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 187 VVDANGRQTPESEILTIDVKPGWKKG-----TKITFPDKGN 222
+DA GRQ E TI+V+PG K G T F D G+
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGS 63
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 187 VVDANGRQTPESEILTIDVKPGWKKG-----TKITFPDKG 221
+DA GRQ E TI+V+PG K G T F D G
Sbjct: 23 ALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,398,769
Number of Sequences: 62578
Number of extensions: 381510
Number of successful extensions: 772
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 52
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)