BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019663
(337 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis]
gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]
Length = 340
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/328 (60%), Positives = 245/328 (74%), Gaps = 12/328 (3%)
Query: 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
H +P W+ P+ TT H ++ + S RL LLHSS KKLS LCH+PRL
Sbjct: 19 HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70
Query: 73 KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
KD WC A +F G++F + +ND AS+ LSFFNGG T K G +G + + +++N F
Sbjct: 71 KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130
Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
VF++RHR ++ GGKEELQH+A+VI+ NM IG+L +GIDNWGH+GGLLGG A SW +GPA
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMVIGILSRGIDNWGHLGGLLGGVATSWFVGPAW 310
Query: 309 KYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
KYE ++DG RIF DR PI +L + K +
Sbjct: 311 KYEALANDGRRIFVDRPPIKYLANIKNR 338
>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera]
gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/323 (60%), Positives = 241/323 (74%), Gaps = 10/323 (3%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
+R PL+ + T H ++ + S RL +H +H L SS K+L+ L H+P LK+ W
Sbjct: 10 SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69
Query: 78 ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
A +F G++F +D+F+++ S FF G TRK S EG S+ + R N GRQW
Sbjct: 70 GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
LNS+GPT+E + GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MR
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMR 246
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFT 313
HR ++G KE LQH+A+VI+ NM IG L KGIDNWGH+GGLLGG SWLLGPA KYE
Sbjct: 247 HRGLVGDSKESLQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESL 306
Query: 314 SDDGFRIFSDRAPIFHLIDWKRK 336
S+DG R+F+DRAPIFHL++ +RK
Sbjct: 307 SNDGRRVFADRAPIFHLVNRRRK 329
>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa]
gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]
Length = 325
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/340 (59%), Positives = 244/340 (71%), Gaps = 25/340 (7%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
SGAIFGLVGS AVF++RHR ++GGGKE+LQ++AKVI NM IGLL KGIDNWGH+GGLLG
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLG 280
Query: 297 GAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
G A SW +GPA +Y S DG R+F D+API +L + K +
Sbjct: 281 GVATSWFVGPAWQYGPQSHDGRRVFVDKAPIRYLTNRKTE 320
>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]
Length = 325
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 201/340 (59%), Positives = 243/340 (71%), Gaps = 25/340 (7%)
Query: 1 MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
M SS S P R P PLNLITT A L L+HSS
Sbjct: 2 MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40
Query: 61 KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
K +S L H+PRLKD W E A + G++ +F+ND FAS+ L FFNGGGTRK +EG
Sbjct: 41 KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100
Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
+ +L+T+ + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
SGAIFGLVGS AVF++RHR ++GG KE+LQ++AKVI NM IGLL KGIDNWGH+GGLLG
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLG 280
Query: 297 GAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
G A SW +GPA +Y S DG R+F D+API +L + K +
Sbjct: 281 GVATSWFVGPAWQYGTQSHDGRRVFVDKAPIRYLTNRKTE 320
>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max]
gi|255640088|gb|ACU20335.1| unknown [Glycine max]
Length = 342
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/317 (58%), Positives = 220/317 (69%), Gaps = 7/317 (2%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL+LI T A L RR HH L LLHS KKL+ L HI RL D+WC+ F+
Sbjct: 22 PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79
Query: 84 NGVNFFRFTNDAFASSLSFFNGGGTRKNSG-----HEGTSHLDTARTNLFIGRQWTNILL 138
NG+N+ + + SS S G G S+ + + F GR+WT ILL
Sbjct: 80 NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139
Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
PT+E GPRR+L VYF SAIASSA SY FC PAVGASGAIFGLVGS AVF++RH++++
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLV 259
Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGF 318
GGGK +LQH+A+VI NM IGLL GIDNWGH+GGL+GG A SW +GPA K+E TS DG
Sbjct: 260 GGGKRDLQHIAQVIALNMVIGLLSTGIDNWGHLGGLVGGVAASWFIGPAWKHESTSSDGR 319
Query: 319 RIFSDRAPIFHLIDWKR 335
R+F D AP++ L KR
Sbjct: 320 RLFIDTAPMYKLFKIKR 336
>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 336
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/315 (53%), Positives = 220/315 (69%), Gaps = 8/315 (2%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GP+R+L VY +SA+ASSAMSY F +P+VGASGAIFGLVGS AVF++RH+ ++ GG
Sbjct: 198 ESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGG 257
Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIF 321
E+L +A++I NMA+GL+ + IDNWGH+GGLLGG A++WLLGP KYE+T+ DG R+F
Sbjct: 258 NEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVF 317
Query: 322 SDRAPIFHLIDWKRK 336
D API L+ W+ +
Sbjct: 318 MDSAPIPLLLRWRNE 332
>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula]
gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]
Length = 327
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 181/316 (57%), Positives = 231/316 (73%), Gaps = 16/316 (5%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D A ++S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
GGK++LQH+A+VI N+AIGL GIDNWGH+GGL+GG A SWL+GPA K+E TS DG R
Sbjct: 246 GGKKDLQHIAQVIALNLAIGLSSTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRR 305
Query: 320 IFSDRAPIFHLIDWKR 335
+F D AP+++L R
Sbjct: 306 LFIDSAPMYNLFKITR 321
>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana]
gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]
Length = 343
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/322 (51%), Positives = 219/322 (68%), Gaps = 15/322 (4%)
Query: 30 TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
+TA + + S HH H R H SS+KKL R+K + F FNG N
Sbjct: 18 STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77
Query: 88 FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
F + D S S FFNGG +R N G EG+S+ +T++ N GR+WTN+LLA+N
Sbjct: 78 FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
V++YIAQ A+ K+L WGAKINSLI++GQ WRLAT++ LHAN HLM+NCYSLNSIGPT
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197
Query: 202 EKICGPRRYLGVYFSSAIAS-------SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
E + GP+R+L VY +SA+A SAMSY F +P+VGASGAIFGLVGS AVF++RH
Sbjct: 198 ESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRH 257
Query: 255 RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTS 314
+ ++ GG E+L +A++I NMA+GL+ + IDNWGH+GGLLGG A++WLLGP KYE+T+
Sbjct: 258 KQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTT 317
Query: 315 DDGFRIFSDRAPIFHLIDWKRK 336
DG R+F D API L+ W+ +
Sbjct: 318 RDGRRVFMDSAPIPLLLRWRNE 339
>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]
Length = 327
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 180/316 (56%), Positives = 230/316 (72%), Gaps = 16/316 (5%)
Query: 24 PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
PL++I T A S +S RL H LL S +KL+ + RLKD+WC+ +
Sbjct: 18 PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68
Query: 84 NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
G+N+ + ++D A ++S SFFNGG +SG+ + +R N F GR+WTNILLA
Sbjct: 69 KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185
Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
T+E GPRRYL +YF+S+IAS+AMSYRFC PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
GG ++LQH+A+VI N+AIGL GIDNWGH+GGL+GG A SWL+GPA K+E TS DG R
Sbjct: 246 GGIKDLQHIAQVIALNLAIGLSPTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRR 305
Query: 320 IFSDRAPIFHLIDWKR 335
+F D AP+++L R
Sbjct: 306 LFIDSAPMYNLFKITR 321
>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]
Length = 369
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/290 (53%), Positives = 206/290 (71%), Gaps = 13/290 (4%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NMA+GL+ + ID
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 315
Query: 287 NWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
NWGH+GGLLGG A++WLLGP KYE+T+ DG R+F D API L+ W+ +
Sbjct: 316 NWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDSAPIPLLLRWRNE 365
>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]
Length = 220
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/210 (72%), Positives = 180/210 (85%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
N F R+WTNILLA NVL +IAQ ATQ KLLLWGAK+NSLIDKGQ WRLATS+FLHANI
Sbjct: 5 NPFNRRKWTNILLAANVLFFIAQLATQGKLLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAMSY FC PAVGASGAIFGLVG
Sbjct: 65 HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMSYWFCKMPAVGASGAIFGLVG 124
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
S AVF++RHR+I+GGGKE+LQH+A+VI+ NM IG+L +GIDNWGH+GGLLGG A SWL+G
Sbjct: 125 SVAVFVLRHRDIVGGGKEDLQHIARVIVLNMVIGILSRGIDNWGHLGGLLGGVAASWLIG 184
Query: 306 PALKYEFTSDDGFRIFSDRAPIFHLIDWKR 335
PA K+E TS DG RIF+D AP++ L+ +R
Sbjct: 185 PAWKHESTSWDGRRIFTDSAPMYTLLKIRR 214
>gi|25518651|pir||F86382 hypothetical protein F4F7.14 - Arabidopsis thaliana
Length = 373
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 198/279 (70%), Gaps = 17/279 (6%)
Query: 60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
++KL R+K + F FNG NF + D S S FFNGG +R N G
Sbjct: 76 LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
EG+S+ +T++ N GR+WTN+LLA+NV++YIAQ A+ K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
LAT++ LHAN HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L +A++I NMA+GL+ + ID
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 315
Query: 287 NWGHVGGLLGGAAISWLLGPALKYEFTS----DDGFRIF 321
NWGH+GGLLGG A++WLLGP KYE+T+ DDG ++F
Sbjct: 316 NWGHIGGLLGGTAMTWLLGPQWKYEYTTRDADDDGVQLF 354
>gi|115479511|ref|NP_001063349.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|51535953|dbj|BAD38035.1| rhomboid-like protein [Oryza sativa Japonica Group]
gi|113631582|dbj|BAF25263.1| Os09g0454100 [Oryza sativa Japonica Group]
gi|218202268|gb|EEC84695.1| hypothetical protein OsI_31626 [Oryza sativa Indica Group]
gi|222641709|gb|EEE69841.1| hypothetical protein OsJ_29608 [Oryza sativa Japonica Group]
Length = 349
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/275 (54%), Positives = 194/275 (70%), Gaps = 8/275 (2%)
Query: 66 LCHIPRLKDQWCENAFRFNGVNFFRFTNDA----FASSLSFFNGGGTRKNSGHEGTSHLD 121
L +PR+ D W E + F + +A +A S FNG G+ + + G L
Sbjct: 74 LGALPRIGDIWFEGSDSFATHSILGVLENALSAPYACSSVLFNGNGSDRR--YIGRGKLP 131
Query: 122 TARTNLFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
+ R + ++ WTNILLAVN+L Y+AQ TQ +LL+WGAKINS+ID+G+ WRLATS+
Sbjct: 132 SRRPSGINSKKRLWTNILLAVNILAYVAQITTQGRLLIWGAKINSMIDRGELWRLATSSL 191
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LHAN+AHL NC+SLNSIGP +E + GPRRYL VYF+SA+A S MSYR+C SPAVGASGA
Sbjct: 192 LHANLAHLAFNCFSLNSIGPMVEMLTGPRRYLAVYFTSALAGSLMSYRYCASPAVGASGA 251
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
IFGLVG++AV+ RHR LG GKE L+H+ +V+I NM +GLL +GIDNWGH+GGLLGG A
Sbjct: 252 IFGLVGAYAVYTWRHRRFLGHGKESLEHIGRVVILNMGMGLLTRGIDNWGHLGGLLGGMA 311
Query: 300 ISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWK 334
++W LGPA +Y++ S DG +F D API L + K
Sbjct: 312 MAWFLGPAWQYQYVSKDGRAVFKDNAPILQLSNGK 346
>gi|357158730|ref|XP_003578222.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 345
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/271 (53%), Positives = 191/271 (70%), Gaps = 4/271 (1%)
Query: 69 IPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG--GGTRKNSGHEGTSHLDTARTN 126
+PR+ + W + F + F++S + GG R N + G +L +R
Sbjct: 73 LPRIGEIWFGGSHPIETNQVFGSLGNVFSASFVCSSALFGGNRSNGRYIGNGNLQPSRPR 132
Query: 127 LFIGRQ--WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
++ WTN+LLAVN+L YIAQ ATQ KLL+WGAK+NSLID+G+FWRLATS+ LH N+
Sbjct: 133 GINSKKRLWTNVLLAVNILAYIAQVATQGKLLMWGAKVNSLIDRGEFWRLATSSLLHGNL 192
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL NC+SLNSIGPT+E + GPRR+L VYF+SA+A S MSY C SP+VGASGAIFGLV
Sbjct: 193 THLAFNCFSLNSIGPTVELVTGPRRFLAVYFTSALAGSLMSYCCCQSPSVGASGAIFGLV 252
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
GS+AV+ RH+ +LG GKE L+H+A+V+I NM +GLL +GIDNWGH+GGLLGG A +W +
Sbjct: 253 GSYAVYTWRHKKLLGRGKESLEHIARVVILNMGMGLLSRGIDNWGHLGGLLGGVATAWFI 312
Query: 305 GPALKYEFTSDDGFRIFSDRAPIFHLIDWKR 335
GP +Y++ + DG +F DRAPI LI+ R
Sbjct: 313 GPDWQYQYVAKDGRVVFKDRAPIHRLINSTR 343
>gi|414589617|tpg|DAA40188.1| TPA: rhomboid-like protein [Zea mays]
Length = 341
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/277 (53%), Positives = 190/277 (68%), Gaps = 16/277 (5%)
Query: 66 LCHIPRLKDQWCENA-----FRFNGVNFFRFTNDAFASSLSFF-NGGGTRKNSGHEGTSH 119
L +P++ W E + F G F+ SS F NG G R S + S
Sbjct: 70 LDALPKMGSFWFEGSESLATFHILGAIGIVFSAPYVCSSALFSGNGSGGRYISNGKLLSR 129
Query: 120 ----LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
+D+ + R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLA
Sbjct: 130 RPRGIDSKK------RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLA 183
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVG 235
TS+ LHAN+ HL NC+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVG
Sbjct: 184 TSSLLHANLTHLAFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVG 243
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
ASGAIFGLVG++AV++ RHR G +E L+H+ +V++ NM +GLL +GIDNWGH+GGLL
Sbjct: 244 ASGAIFGLVGAYAVYMWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRGIDNWGHLGGLL 303
Query: 296 GGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLID 332
GG A++W LGPA +Y++ + DG +F DRAP+ LI
Sbjct: 304 GGVAMAWFLGPAWQYQYVAKDGRAVFKDRAPVLRLIK 340
>gi|226503627|ref|NP_001148641.1| rhomboid-like protein [Zea mays]
gi|195621054|gb|ACG32357.1| rhomboid-like protein [Zea mays]
Length = 346
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/202 (64%), Positives = 163/202 (80%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 144 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 203
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYR SPAVGASGAIFGLVG++AV+
Sbjct: 204 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAYAVY 263
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
+ RHR G +E L+H+ +V++ NM +GLL +GIDNWGH+GGLLGG A++W LGPA +Y
Sbjct: 264 MWRHRRFFGNSRESLEHIGRVVVLNMGMGLLSRGIDNWGHLGGLLGGVAMAWFLGPAWQY 323
Query: 311 EFTSDDGFRIFSDRAPIFHLID 332
++ + DG +F DRAP+ LI
Sbjct: 324 QYVAKDGRAVFKDRAPVLRLIK 345
>gi|242044898|ref|XP_002460320.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
gi|241923697|gb|EER96841.1| hypothetical protein SORBIDRAFT_02g026450 [Sorghum bicolor]
Length = 341
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 197/311 (63%), Gaps = 14/311 (4%)
Query: 26 NLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNG 85
N++ A L SL RR LL S ++ L +P++ D W E + F
Sbjct: 40 NVVAAFAGAQLGRSLRRRFAG--------LLRS--PEVRHLDALPKMGDFWFEGSEPFAT 89
Query: 86 VNFF----RFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
+ + S + F+G G+ G R R WTN+LLA+N
Sbjct: 90 FPILGAIGNVLSAPYVCSSALFSGNGSGGRYISNGKLLSRRPRGIDSKKRLWTNVLLALN 149
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
VL Y+AQ A+Q KLLLWGAKINSLID+GQFWRLATS+ LHA++ HL NC+SLNSIGP +
Sbjct: 150 VLAYVAQVASQGKLLLWGAKINSLIDRGQFWRLATSSLLHADLTHLAFNCFSLNSIGPMV 209
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
E + GPRR+L VYFSSA+A S MSYR SPAVGASGAIFGLVG+ AV++ RHR G
Sbjct: 210 EMLTGPRRFLAVYFSSALAGSLMSYRCSASPAVGASGAIFGLVGAHAVYMWRHRRFFGNS 269
Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIF 321
+E L+H+ +V++ NM +GLL +GIDNWGH+GGLLGG A++W LGPA +Y++ + DG +F
Sbjct: 270 RESLEHIGRVVVLNMGMGLLSRGIDNWGHLGGLLGGVAMAWFLGPAWQYQYVAKDGRAVF 329
Query: 322 SDRAPIFHLID 332
DRAP+ LI
Sbjct: 330 KDRAPVLRLIK 340
>gi|168058279|ref|XP_001781137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667455|gb|EDQ54085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/233 (53%), Positives = 165/233 (70%), Gaps = 4/233 (1%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINS 164
T ++G E + T IG R WTNI+L VN+L++ AQ A+Q +LLL GAK+NS
Sbjct: 155 TAASTGDENDTSSANTITGYGIGSRSRNWTNIILGVNLLMFGAQIASQGQLLLLGAKVNS 214
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LIDKGQ+WR T + LHANI HL+VNCYSLNS+GPT+E + G +R+L +Y SAIASS +
Sbjct: 215 LIDKGQWWRFVTPSVLHANIMHLLVNCYSLNSVGPTVESLSGGKRFLAIYAVSAIASSGL 274
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
SY C +P+VGASGAIFGLVG+ AVF+ RH+ ++ GG + L +A+VI N+ GLL G
Sbjct: 275 SYTLCTAPSVGASGAIFGLVGALAVFLARHKTLMIGGDQSLAQVARVIAINLGFGLLSSG 334
Query: 285 IDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLID-WKRK 336
IDNWGHVGGL GGAA++WLLGPA +E+ G ++ DR PI L+ W ++
Sbjct: 335 IDNWGHVGGLFGGAAVAWLLGPAFSFEYAPKLGKKLLLDRPPIAKLLSPWSKE 387
>gi|147784181|emb|CAN72839.1| hypothetical protein VITISV_008789 [Vitis vinifera]
Length = 246
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 139/193 (72%), Gaps = 27/193 (13%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEK 203
V+I Q ATQ KLLLWGAK VNC+SLNS+GPT+E
Sbjct: 80 VFIGQAATQGKLLLWGAK---------------------------VNCFSLNSVGPTVEN 112
Query: 204 ICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKE 263
+ GPRRYL VYF+SAIASSAMSY C PAVGASGAIFGLVGS AVF+MRHR ++G KE
Sbjct: 113 LSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMRHRGLVGDSKE 172
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSD 323
LQH+A+VI+ NM IG L KGIDNWGH+GGLLGG SWLLGPA KYE S+DG R+F+D
Sbjct: 173 SLQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESLSNDGRRVFAD 232
Query: 324 RAPIFHLIDWKRK 336
RAPIFHL++ +RK
Sbjct: 233 RAPIFHLVNRRRK 245
>gi|414589616|tpg|DAA40187.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 341
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 121/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 139 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 198
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 199 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 258
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 259 MWRHRRFFGNSRESLEHIGRVVVLNM 284
>gi|223943385|gb|ACN25776.1| unknown [Zea mays]
Length = 266
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 121/146 (82%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R WTN+LLA+NVL Y+AQ A+Q KLL+WGAKINSLID+GQFWRLATS+ LHAN+ HL N
Sbjct: 64 RLWTNVLLALNVLAYVAQVASQGKLLMWGAKINSLIDRGQFWRLATSSLLHANLTHLAFN 123
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG++AV+
Sbjct: 124 CFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGAYAVY 183
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNM 276
+ RHR G +E L+H+ +V++ NM
Sbjct: 184 MWRHRRFFGNSRESLEHIGRVVVLNM 209
>gi|388510370|gb|AFK43251.1| unknown [Lotus japonicus]
Length = 154
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 125/148 (84%)
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
M+NC+SLNS+GPT+E+ GPRR+L VYF SAIASSAM Y FC PA GASGAIFGLVGS
Sbjct: 1 MINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMGYWFCKMPAAGASGAIFGLVGSV 60
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
AVF++RHR+I+GGGKE+LQH+A+VI+ NM IG+L +GIDNWG +GGLLGG A SWL+GPA
Sbjct: 61 AVFVLRHRDIVGGGKEDLQHIARVIVLNMVIGILSRGIDNWGPLGGLLGGVAASWLIGPA 120
Query: 308 LKYEFTSDDGFRIFSDRAPIFHLIDWKR 335
K+EFTS DG RIF+D AP++ L+ +R
Sbjct: 121 WKHEFTSWDGRRIFTDSAPMYTLLKIRR 148
>gi|384247206|gb|EIE20693.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 238
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 140/221 (63%), Gaps = 6/221 (2%)
Query: 110 KNSGHEGTSHLDTARTNLFIG--RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID 167
K G + T+ T+ N F R+ T+ILL +N VY+AQ ++DKLLL GAK N LI
Sbjct: 14 KQYGRQATTR--TSSRNEFGAPYRRVTDILLVLNAAVYVAQLVSKDKLLLLGAKDNQLIR 71
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
G++WRL T LHAN+ HL+ N YSLNS+GP +E +CG +R++ VY +SA+ S SY
Sbjct: 72 AGEWWRLLTPVALHANLIHLLTNNYSLNSLGPAVEGLCGRQRFVSVYTASALVGSVASYA 131
Query: 228 FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGID 286
F SP+VGASGAIFGL G+ AV+ RHR ++G G L L + + N+AIGL ID
Sbjct: 132 FNPSPSVGASGAIFGLGGALAVYAARHRKLMGSRGDAILSSLGQSLALNVAIGLTTPRID 191
Query: 287 NWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI 327
WGH GGL+GGA ++LLGP ++ F G R D P+
Sbjct: 192 QWGHFGGLIGGALTAYLLGPNIEV-FQGKGGKRQVRDNPPL 231
>gi|452819642|gb|EME26697.1| rhomboid family protein [Galdieria sulphuraria]
Length = 371
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 133/207 (64%), Gaps = 6/207 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WT ILL N++V++ Q AT ++LLL GAK+N LI GQ +RL T FLH NIAHLMVNCY
Sbjct: 164 WTKILLVTNIVVFLLQMATANQLLLMGAKVNELISSGQLYRLLTPIFLHGNIAHLMVNCY 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
SL S+GP +E+ G R++G+Y S S+ F +P++GASGAIFGLVG FAV++
Sbjct: 224 SLYSLGPVVERCFGSHRFIGLYLFSGFFGCIASFFFSKNPSLGASGAIFGLVGGFAVYLK 283
Query: 253 RHRNILG-GGKEELQHLAKVIIFNMAIGLLIKG--IDNWGHVGGLLGGAAISWLLGPALK 309
RH+ +LG + L +A+ +IFN+ + L +G IDNWGH+GG LGG S+L GP +
Sbjct: 284 RHQYLLGETSRLGLFSIAQSLIFNILMSLQ-RGSRIDNWGHLGGFLGGVFYSYLFGPNFE 342
Query: 310 YEFTSDDGFRIFSDRAPIFH-LIDWKR 335
+ G + DR I + WK+
Sbjct: 343 RKRIGSRGVYL-QDRPMIKRWFLRWKK 368
>gi|302823732|ref|XP_002993515.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
gi|300138646|gb|EFJ05407.1| hypothetical protein SELMODRAFT_431594 [Selaginella moellendorffii]
Length = 280
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T+++L+LWGAK+N+LI KGQ WRL T AFLH N+ HL++NCYS++S+GP +E + G +R+
Sbjct: 74 TENRLILWGAKVNNLIAKGQIWRLLTPAFLHVNLIHLLLNCYSVHSLGPHLESLGGSKRF 133
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
L V+ +A+ +S +S+ C SPAVGASGAI GL+G+ AV+ RHR +L +E L +++
Sbjct: 134 LVVFAVAAVTTSCLSFLMCKSPAVGASGAICGLIGALAVYSFRHRKLLNKAQENLGRISR 193
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ FNM +GL+ +DNWGH+GG +GGA L+GP
Sbjct: 194 TVAFNMVLGLMSHEVDNWGHLGGFVGGAFA--LVGP 227
>gi|145347053|ref|XP_001417993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578221|gb|ABO96286.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R TN ++ + Q + + GAK+N I GQ WRLAT FLH + HLMVN
Sbjct: 49 RACTNAIMIGTASAFALQILSGQAITALGAKVNERIAAGQLWRLATPIFLHGGLPHLMVN 108
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP ME G ++L VYF + +A + SYRFC S +VGASGA+FGL G+ AV+
Sbjct: 109 MYSLNSIGPLMEATFGREQFLAVYFGAGVAGNYASYRFCASNSVGASGAVFGLAGALAVY 168
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ RH+ LG + +LQ L + NM GL + IDNWGH GGL+GGAA+++L GP L
Sbjct: 169 LQRHKRYLGERADMQLQQLGTALAVNMGFGLTSRRIDNWGHAGGLVGGAALAFLTGPNLV 228
Query: 310 YEFTSDDGFR 319
E G R
Sbjct: 229 METDGGYGLR 238
>gi|357128745|ref|XP_003566030.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 267
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 115/182 (63%), Gaps = 12/182 (6%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHL-----------MVNCYSLNSIGPTMEKICGPRRYL 211
N+LI KGQ WRLATS LH + HL +VN SL +GP +E+ GPRR+L
Sbjct: 81 NALIKKGQIWRLATSCLLHGGLIHLAVRVSASVDIAVVNNVSLREVGPEVEEATGPRRFL 140
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y +SA+ S MSY F P++GASGAI GL+G+ AV++ R++ L +E L+H+
Sbjct: 141 AIYCTSAVTGSLMSYWFSARPSIGASGAICGLIGAQAVYVWRNQEYLEKSEETLKHIRYD 200
Query: 272 IIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHL 330
++ N IGL++ + I+NWGH+GGLL GAA+ W +GP +DDG +F DRAP L
Sbjct: 201 VLLNAGIGLILWRFINNWGHLGGLLRGAAVEWFVGPNWDRHHFADDGTVVFMDRAPFAQL 260
Query: 331 ID 332
++
Sbjct: 261 MN 262
>gi|159482562|ref|XP_001699338.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158272974|gb|EDO98768.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 406
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 123/198 (62%), Gaps = 9/198 (4%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N LV++ + ++D +L+WGAK+N+LI GQ+WRL T FLH+N+ HL +N
Sbjct: 90 RRTTDVFLCLNALVFVLNWLSRDVVLIWGAKVNALIAAGQWWRLVTPLFLHSNLFHLAIN 149
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G RR +Y +SA S+ P G + A+FGL + VF
Sbjct: 150 MHALHTLGPQVEVVSGSRRTAAIYMASASCSA-------RCPVWGPAAAMFGLGAALGVF 202
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
RH ++LG + L+ L + N+A L+ K IDNWGH GGL+GGA +S+L+GPA +
Sbjct: 203 YWRHADLLGPASDSGLRSLGLTAVINIAYSLVNKRIDNWGHFGGLVGGALLSYLVGPAFQ 262
Query: 310 YEFTSDDGFRIFSDRAPI 327
T+ G R D P+
Sbjct: 263 V-VTAPGGLRGLQDNPPL 279
>gi|255077864|ref|XP_002502512.1| rhomboid-like protein [Micromonas sp. RCC299]
gi|226517777|gb|ACO63770.1| rhomboid-like protein [Micromonas sp. RCC299]
Length = 336
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 1/179 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ LL Y+ Q + GAK+N+ I +G+ WRL T LH + HLMVN
Sbjct: 115 RALTDALLWATAGGYVLQLLSGHAFTAVGAKVNAKIAQGEVWRLLTPLLLHGSALHLMVN 174
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
C SLN++GP +E+ G +++ VY S + + +SY+ C + AVGAS AIFGLVG+ ++
Sbjct: 175 CMSLNNLGPVVERQFGREQFMAVYLGSGLLGNFLSYKRCPNNAVGASSAIFGLVGALGIY 234
Query: 251 IMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
+ RHR++ G G + Q+L + N GL+ K IDNWGH GG LGGA ++W +GP L
Sbjct: 235 LNRHRDLFGDYGDKVFQNLLGSVGLNAMFGLMSKRIDNWGHFGGFLGGAVVAWTVGPNL 293
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 10/185 (5%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ VNVL YI + + L+ GAK+N LI +G+++RL T FLH I
Sbjct: 141 TYILITVNVLAYIVTAYLSGNFVDSNINVLVFLGAKVNYLIARGEYYRLITCMFLHGGIM 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL++N ++L S+GP +EKI G RYL +YF S I SS SY F + ++GASGAIFGL+G
Sbjct: 201 HLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVSSIFSYMFSTAVSIGASGAIFGLLG 260
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +F M+ ++ +G G + ++ VI N+ +G + +DN+GH+GGL+GG+AI+ LLG
Sbjct: 261 AALIFAMKMKDRIGRGF--ITNIVSVIFINLFMGFSMSNVDNFGHLGGLIGGSAITLLLG 318
Query: 306 PALKY 310
+Y
Sbjct: 319 IGKRY 323
>gi|357128747|ref|XP_003566031.1| PREDICTED: rhomboid protease gluP-like [Brachypodium distachyon]
Length = 214
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N+LI KGQ WRLATS+ LH + HL VN YSL+ +GP +E+ GPRR+L +Y +SA+A S
Sbjct: 45 NALIKKGQIWRLATSSLLHGGLFHLAVNAYSLHVVGPEVEEATGPRRFLAIYCTSALAGS 104
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL-L 281
MSY F G + VG+ AV++ R++ L +E L+ + ++ N+ IGL L
Sbjct: 105 LMSYWF------GMFNLLLDRVGAQAVYVWRNQKYLENAEETLKDIRYDVLINLGIGLFL 158
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLID 332
+ IDNW H+GG LGGAA+ W +GP ++DG +F DRAP L++
Sbjct: 159 FRRIDNWAHLGGFLGGAAVEWFVGPNWNEHHVAEDGTVVFKDRAPFAQLMN 209
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
GR+ T++LL N L++ Q T+ L +WG K+N+L+ GQ+WRL T AFLH N+ HL V
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVNALVVAGQWWRLLTPAFLHGNLMHLAV 94
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
NCYSLN++GP +E GP R+L +Y S+A+A + S F +P ++GASGA+FG+ G+
Sbjct: 95 NCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVAS--FLGAPKSVSLGASGAVFGIGGA 152
Query: 247 FAVFIMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGHV 291
A++ R+R+I G + L+ L + ++ N+ GL IDNWGH+
Sbjct: 153 LAMYFYRNRDIYGKTSDRVLRQLWQTLVLNVVYGLSSTRIDNWGHM 198
>gi|308804015|ref|XP_003079320.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
gi|116057775|emb|CAL53978.1| Predicted inosine-uridine preferring nucleoside hydrolase (ISS)
[Ostreococcus tauri]
Length = 651
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 115/187 (61%), Gaps = 3/187 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R T+ ++ + Q T+ L +G KIN I G+ WRL T FLH + HLMVN
Sbjct: 55 RACTDGIIVATCGAFALQLLTRQTLTGFGVKINEKIAAGELWRLVTPMFLHGGLPHLMVN 114
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YSLNSIGP +E G ++ Y ++ +A + SYRFC +P++GASGA+FGL G+ AV+
Sbjct: 115 MYSLNSIGPLVEATFGREQFCATYLAAGLAGNYASYRFCPTPSLGASGAVFGLAGALAVY 174
Query: 251 IMRHRNILGGGKE-ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ RH+++LG + +L+ + + NMA GL IDNWGH GGLLGGAA ++ GP L
Sbjct: 175 LQRHKHLLGERADMQLKQIGSALAVNMAFGLTSARIDNWGHGGGLLGGAASAYFTGPNLV 234
Query: 310 YEFTSDD 316
E SDD
Sbjct: 235 LE--SDD 239
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 1/204 (0%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL 165
GG +S G D T+ R T+ LL + Y+ Q T GAK+N+
Sbjct: 151 GGGAGSSSPRGGRRYDGGLTSGDPRRAATDALLWTTAIGYVLQVLTGHAFTAMGAKVNAE 210
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ +RL T LH + HL+VNC SL+++GP +E+ G ++G+Y +S I + +S
Sbjct: 211 IAAGQVYRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASGIGGNYLS 270
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKG 284
Y+ C + AVGASGAIFGLVG+ V++ RH ++ G G +LQ L + N G++ +
Sbjct: 271 YKMCPNNAVGASGAIFGLVGAMGVYLHRHSDLFGAVGDRQLQSLLGSVGVNALFGMMSRR 330
Query: 285 IDNWGHVGGLLGGAAISWLLGPAL 308
IDNW H+GG L GA ++ GP L
Sbjct: 331 IDNWAHLGGFLTGAFVAAAFGPNL 354
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 11/186 (5%)
Query: 128 FIGRQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ F ++ + LL GAK N LI +G+ WRL T AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNLGAKYNPLIYQGEVWRLVTCAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFGL+G+ VF ++ R+ + KE + +L VII N+ IG I IDN GH+GG LGG
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLIGVIILNLLIGFNISNIDNLGHIGGFLGGV 310
Query: 299 AISWLL 304
++ +L
Sbjct: 311 IMARIL 316
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 1/173 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T+ LL + Y Q T+ K AK+N + GQ++RL TSAFLH + HL VN
Sbjct: 73 RKATDALLLSLLAGYSLQLLTRQKATAAFAKVNENVSNGQYYRLLTSAFLHGGLVHLFVN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
YS+N+IG +E+I G + SA++ + SY+ PAVGASGAIFGL G+FAV+
Sbjct: 133 MYSVNAIGSAVERIFGKTHTYAAFTLSALSGNIASYKMSKYPAVGASGAIFGLAGAFAVY 192
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+ RH+++LG G EE L L ++ N G +DNW H GGL+GG W
Sbjct: 193 LYRHKDVLGSGAEEQLNALGTSLMINAVYGATSARVDNWAHFGGLVGGCTYLW 245
>gi|397612848|gb|EJK61912.1| hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]
Length = 434
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 9/197 (4%)
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIG 198
VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL S+G
Sbjct: 225 VNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVANSYSLKSMG 283
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+ I
Sbjct: 284 NNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNSEIF 343
Query: 259 G-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL---KYEFTS 314
G G+ + L + I N+ +G+ IDNWGH+GG +GG +SWL+GP L + S
Sbjct: 344 GHSGRAQKGALLETIGINLVLGMTNPVIDNWGHIGGFIGGVGMSWLIGPKLYVARVPLDS 403
Query: 315 DDGF---RIFSDRAPIF 328
D F RI DR ++
Sbjct: 404 DGEFQAGRIVVDRPTLY 420
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 119/186 (63%), Gaps = 11/186 (5%)
Query: 128 FIGRQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAF 179
I ++ T IL+A+NV+V++ F ++ + LL +GAK N LI +G+ WRL AF
Sbjct: 133 LINKKSTLILIAINVIVFLLTVFISRSILTIDINVLLNFGAKYNPLIYQGEVWRLVACAF 192
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH I HL+ N Y+L +GP +EKI G ++YL +YF SAI SS++ N+ +VGASG
Sbjct: 193 LHGGITHLLFNMYALYILGPQVEKIFGIKKYLIIYFVSAITSSSLGVALNKNTISVGASG 252
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFGL+G+ VF ++ R+ + KE + +L VII N+ IG I IDN GH+GG LGG
Sbjct: 253 AIFGLLGAILVFSIKQRHKV--EKEYILNLLGVIILNLLIGFNISNIDNLGHIGGFLGGI 310
Query: 299 AISWLL 304
++ +L
Sbjct: 311 IMARIL 316
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 6/166 (3%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI G +WRL ++ FLH ++ H++ N Y+L ++GP E+I G RR+L +Y
Sbjct: 45 LVFLGAKVNELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALY 104
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVII 273
F + + S SY S +VGASGAIFGL+G +F +R +LG GK ++Q++A V +
Sbjct: 105 FLAGLGGSLASYLLSPSVSVGASGAIFGLIGGLGIFYYLNRAVLGNFGKAQVQNMATVAL 164
Query: 274 FNMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGF 318
N+ IG IDNWGH+GGL+GG W L P F D GF
Sbjct: 165 INLFIGFSAPSIIDNWGHLGGLVGGIVAGWALAP----RFMVDPGF 206
>gi|397576168|gb|EJK50102.1| hypothetical protein THAOC_30966 [Thalassiosira oceanica]
Length = 527
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 9/197 (4%)
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIG 198
VN+ VY Q +L WGAK + L+ +G Q RL T FLH I HL+ N YSL S+G
Sbjct: 214 VNIAVYGLQ-TLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSNSYSLKSMG 272
Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+E GP R L Y S +A + S +PAVGASGAIFGLVG++ F+ R+ I
Sbjct: 273 NNVEGAFGPARTLATYLVSGVAGNIFSAVNSPNPAVGASGAIFGLVGAYYTFLARNSEIF 332
Query: 259 G-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL---KYEFTS 314
G G+ + L + I N+ +G+ IDNWGH+GG +GG +SWL+GP L + S
Sbjct: 333 GHSGRAQKGALLETIGINLVLGMTNPVIDNWGHLGGFIGGVGMSWLIGPKLYVARVPLDS 392
Query: 315 DDGF---RIFSDRAPIF 328
D F RI DR ++
Sbjct: 393 DGEFQAGRIVVDRPTLY 409
>gi|148657883|ref|YP_001278088.1| rhomboid family protein [Roseiflexus sp. RS-1]
gi|148569993|gb|ABQ92138.1| Rhomboid family protein [Roseiflexus sp. RS-1]
Length = 283
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 136 ILLAVNVLVYIAQF-------------ATQDKLLLWGAKINSLID-KGQFWRLATSAFLH 181
ILL +N+LV++ + + + L+WGAK N+ I GQ++R T+ FLH
Sbjct: 50 ILLTINILVFVGPWLLDVIGIRIAGVVSVYELTLIWGAKENAAISIGGQYYRFLTAMFLH 109
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
+IAHL N ++L S+G E+I G +R+L +Y + + MSY F +P+VGASGAIF
Sbjct: 110 GSIAHLFFNSFALYSLGFEAERIFGSQRFLALYLIAGLGGGVMSYAFNPNPSVGASGAIF 169
Query: 242 GLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
GL+G+ F + R++LGG +++L L V++ N+A+G IDN H+GGLL GA I
Sbjct: 170 GLIGALIAFYVVARSVLGGIARQQLGSLIFVVMINLALGFTSPYIDNNAHIGGLLTGAVI 229
Query: 301 SWLLGP 306
WLL P
Sbjct: 230 GWLLAP 235
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 119/183 (65%), Gaps = 11/183 (6%)
Query: 131 RQWTNILLAVNVLVYI-AQFATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
++ T IL+A+NV++++ F ++ + L+ +GAK N LI +G+ WRL T AFLH
Sbjct: 136 KKSTLILIAMNVIIFLLTAFISRRILTIDINVLINFGAKYNPLIYQGEIWRLITCAFLHG 195
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
IAHL+ N YSL +GP +E+I G ++YL +YF+SAI SS +S NS +VGASGAIF
Sbjct: 196 GIAHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITSSLLSVLLNENSVSVGASGAIF 255
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
GL+G+ +F ++ R+ + G + +L +II + G I+GIDN GH+GG LGG +
Sbjct: 256 GLLGAILIFSIKERHRIKKG--YILNLVGIIILILMSGFTIRGIDNLGHIGGFLGGLIMG 313
Query: 302 WLL 304
+L
Sbjct: 314 RIL 316
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 19/211 (9%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQ-------FATQDKLLLW 158
G + N G S + N+ T IL+ +N++V++ F ++L++
Sbjct: 121 GNLQINERKNGQSKKEHKNYNIL-----TFILIGINIVVFLLTAFISGNIFDIDTRVLIY 175
Query: 159 -GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAKIN LID G+ WRL T AFLH+ + H++ N YSL IGP +E+I G R+YL +Y S
Sbjct: 176 FGAKINILIDHGEIWRLLTCAFLHSGLIHIVCNMYSLYIIGPQIEQIYGIRKYLIIYLIS 235
Query: 218 AIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
I +S SY N A+GASG IFGL+G+ F + RN + K+ L L ++I N+
Sbjct: 236 CITASISSYFLNPNGIAIGASGGIFGLMGALLAFALIERNRI--QKKFLSSLLQIIAINL 293
Query: 277 AIGLLIKGIDNWGHVGGLLGGAA---ISWLL 304
IGL IK IDN+ H+GGL+GG IS++L
Sbjct: 294 FIGLSIKNIDNFAHIGGLVGGIVSGYISYIL 324
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 16/210 (7%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILLAVNVLVY----IAQFAT 151
FF+ G ++ + ++ + R F W T I++A+NVL+Y + T
Sbjct: 147 FFSKGLEKRETDYKDIEDIIENRKKDFEIQFKAKTPWLTYIIIAMNVLMYGLLRLVAMKT 206
Query: 152 ----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
+ +L +GAK+N+LI +GQ+WR T FLHA+I HL VNCYS+ IG +EKI G
Sbjct: 207 GTSYEQQLEPFGAKVNNLIMEGQYWRFFTPMFLHADIVHLAVNCYSIYIIGAQVEKIFGR 266
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
R+L +YF + + SA S+ F + +VGASGAIFGLVG+ F +R +L +
Sbjct: 267 GRFLAIYFVAGLIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYG--VN 324
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L +I+ N+A G++ K IDN H+GGL+GG
Sbjct: 325 LITMIVINLAYGVMNKRIDNHAHIGGLVGG 354
>gi|302841472|ref|XP_002952281.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
gi|300262546|gb|EFJ46752.1| hypothetical protein VOLCADRAFT_105418 [Volvox carteri f.
nagariensis]
Length = 399
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
R+ T++ L +N L+Y + ++D LLLWG K+N+LI GQ WRL T FLH+N HL++N
Sbjct: 99 RRATDVFLVLNALIYALNWLSKDVLLLWGCKVNALIAAGQLWRLVTPLFLHSNAFHLLIN 158
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L+++GP +E + G +R VY +S + +S S+ + P+VGASGA+FGL + VF
Sbjct: 159 MHALHTLGPQVEVVSGSKRTSVVYLASGVLASLASFMWSPLPSVGASGAVFGLGAALGVF 218
Query: 251 IMRHRNILGGGKEE-LQHLAKVIIFNMAIGLLIKGIDN 287
RHR++LG E L+ L N+A L+ K IDN
Sbjct: 219 YWRHRDVLGPASESGLRSLGLAAAINIAYSLVSKRIDN 256
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 151/307 (49%), Gaps = 46/307 (14%)
Query: 25 LNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFN 84
++ + +H + ++ +R L L+ S K++ + +P AF
Sbjct: 95 MDKVEIIKQHQMDITSEKRFLKCISLNI------SAKQVEKYFSVP---------AFDAG 139
Query: 85 GVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLF-----IGRQW-TNILL 138
V F+ FF+ G R+ + ++ + R F + W T I++
Sbjct: 140 LVKSFK----------RFFSKGLDRRETDYQDIEGIIEKRKKDFEIQFKVQTPWLTYIII 189
Query: 139 AVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
A+N+++Y + Q A + +L +GAK+N+LI +GQ+WR FLHA+I HL VN
Sbjct: 190 ALNIVMYGLLQLVSMKTGTAYEQQLEPFGAKVNNLIMEGQYWRFFAPMFLHADIVHLAVN 249
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
CYS+ IG +EKI G R+L +YF S SA S+ F + +VGASGAIFGLVG+ F
Sbjct: 250 CYSIYIIGSQVEKIFGRGRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFGLVGAMLYF 309
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
+R +L +L +++ N+A G + K IDN H+GG +GG L A Y
Sbjct: 310 SLRRPALLKSSYG--VNLITMLVINLAYGFMNKRIDNHAHIGGFVGG-----FLTTAAVY 362
Query: 311 EFTSDDG 317
+ +G
Sbjct: 363 SYQERNG 369
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 121/186 (65%), Gaps = 5/186 (2%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMV 189
R T+ L VNV+V++ Q TQ LL GAKI S+I + Q++RL T FLH +++H++V
Sbjct: 142 RAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILV 201
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSF 247
NC+SLN+IGP +E+ G R + Y + IA + S+ F P+VGASGAIFGLVG+
Sbjct: 202 NCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGAL 261
Query: 248 AVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLG 305
VF+ RH++I G + L + + I N+ IGL IDNWGH+GG +GGA +++L+G
Sbjct: 262 GVFLARHQDIFGDRSRYMLNGIIQTCILNLIIGLAPGSNIDNWGHIGGAIGGAVVAYLIG 321
Query: 306 PALKYE 311
P LK +
Sbjct: 322 PNLKVK 327
>gi|187776993|ref|ZP_02993466.1| hypothetical protein CLOSPO_00538 [Clostridium sporogenes ATCC
15579]
gi|187773921|gb|EDU37723.1| peptidase, S54 family [Clostridium sporogenes ATCC 15579]
Length = 344
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A FI+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATFIIAYKNRKRGGKEFLNNIISVIVI 303
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ +G I +DN+GH+GGL+GG ++ LL
Sbjct: 304 NLILGFSIPNVDNFGHIGGLIGGVIVTLLL 333
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 2/163 (1%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T L++ GAK+N I G+ WRL T+ LHAN+ H+ N Y+L+ +GP E+ G R+
Sbjct: 72 TLSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFNGYALSVLGPETERFYGHVRF 131
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLA 269
L +Y S + S SY ++PAVGASGAIFGL+G +F +R +LG G+++++ +
Sbjct: 132 LVLYLLSGVGGSIASYALSSAPAVGASGAIFGLIGGLGMFYYLNRQVLGQFGQDQVRGIV 191
Query: 270 KVIIFNMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGPALKYE 311
+ + N+ IG +G IDNWGH+GGL+ G +S L P L +
Sbjct: 192 AIAVINLLIGFAAQGVIDNWGHLGGLVSGVVVSLALSPRLTID 234
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L + GAKIN I G+ WRL T+ FLHAN+ H+ N Y+L+ +GP E+ G R+L +Y
Sbjct: 76 LAVLGAKINERIADGELWRLLTAVFLHANLIHIFFNGYALSVLGPETERFYGHGRFLALY 135
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVII 273
S + S SY +PAVGASGAIFGL+G VF +R +LG G+ +++ + + +
Sbjct: 136 LISGLGGSIASYALSPAPAVGASGAIFGLIGGLGVFYYLNRRVLGEFGQNQVRGIVAIAL 195
Query: 274 FNMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGPALKYE 311
N+ IG +G IDNWGH+GGLL G I L P L +
Sbjct: 196 INLLIGFAAQGVIDNWGHLGGLLSGIVIGVALAPRLTVD 234
>gi|422293068|gb|EKU20369.1| hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
RHR++ + L+ +A+ ++ N +G+ IDN+GH+GGL+GGA WL GP L
Sbjct: 138 CYRHRHVWNL-EGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVP 196
Query: 311 EFTSDDGFRIFSDRAPIFH 329
T + FR + + +PI
Sbjct: 197 LTTREGVFRGYVN-SPILQ 214
>gi|422294933|gb|EKU22233.1| hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana
CCMP526]
Length = 249
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
WTN LLA+NV ++IAQ + L GAK + LI +G+ +RL T LH +I HLM N Y
Sbjct: 19 WTNRLLALNVAIFIAQ-QVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSY 77
Query: 193 SLNSIGPTMEKI-CGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF 250
++ ++G +E + GP +YL +Y S +A +A+S+ +P ++GAS A+ GL+G+ +F
Sbjct: 78 TMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLF 137
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
RHR++ + L+ +A+ ++ N +G+ IDN+GH+GGL+GGA WL GP L
Sbjct: 138 CYRHRHVWNL-EGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVP 196
Query: 311 EFTSDDGFRIFSDRAPIFH 329
T + FR + + +PI
Sbjct: 197 LTTREGVFRGYVN-SPILQ 214
>gi|424826465|ref|ZP_18251350.1| S54 family peptidase [Clostridium sporogenes PA 3679]
gi|365980910|gb|EHN16927.1| S54 family peptidase [Clostridium sporogenes PA 3679]
Length = 343
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LNSIGP +E G +YL +Y
Sbjct: 186 LIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNSIGPLVEIYFGKVKYLIIY 245
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S I SS SY F +S ++GASGAIFG +G A I+ ++N GGKE L ++ VI+
Sbjct: 246 FISGILSSYFSYLFSSSVSIGASGAIFGTLG--ATLIIAYKNRKKGGKEFLNNIISVIVI 303
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ +G I +DN+GH+GGL+GG ++ LL
Sbjct: 304 NLILGFSIPNVDNFGHIGGLIGGVIVTLLL 333
>gi|223994881|ref|XP_002287124.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976240|gb|EED94567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 866
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 5/184 (2%)
Query: 130 GRQWTNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKG-QFWRLATSAFLHANIA 185
G+ N L L+ IA F Q L WGAK + L+ +G Q RL T FLH I
Sbjct: 527 GQIGKNTLTGNIFLLNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIG 586
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HLM N YSL S+G +E+ G R++ Y S I + +S +PAVGASGAIFGLVG
Sbjct: 587 HLMANSYSLKSMGMNIERSFGRSRFVATYLLSGIMGNVVSAIQSPNPAVGASGAIFGLVG 646
Query: 246 SFAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ F+ R++++ G G+ + L + I FN+ +G+ IDNWGH+GG +GG ++L
Sbjct: 647 AYYTFLSRNQDLFGYSGQRQKSALIETIGFNLLLGMTNPMIDNWGHIGGFIGGVGCAYLF 706
Query: 305 GPAL 308
GP L
Sbjct: 707 GPKL 710
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 41/291 (14%)
Query: 21 TRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENA 80
+ P ++ + +H + ++ +R + ++ S K+ + +P A
Sbjct: 91 STPDMDKVEIIKQHQMDITSEKRFMKCISVNI------SAKQAEKYFSVP---------A 135
Query: 81 FRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ-----W-T 134
F V F+ FF+ G ++ + ++ + R F + W T
Sbjct: 136 FDAGLVKSFK----------RFFSKGLDKRETSYKDIEDVIEKRKKDFEIQSKAETPWLT 185
Query: 135 NILLAVNVLVY-IAQF-------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
I++A N++++ + Q A Q +L +GAK+N+LI +GQ+WR + FLH +I H
Sbjct: 186 YIIIAFNIVMWGLLQLVSMRTGTAYQQQLEPFGAKVNNLIMEGQYWRFISPMFLHGDIVH 245
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L VNCYSL IG +EKI G R+L +YF S SA S+ F + +VGASGAIFGLVG+
Sbjct: 246 LAVNCYSLYIIGSQVEKIFGRGRFLAIYFVSGFIGSAASFAFSLNSSVGASGAIFGLVGA 305
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F +R +L +L ++I N+A G + K IDN H+GG +GG
Sbjct: 306 MLYFSLRRPALLKSSYG--VNLITMLIINLAYGFMNKRIDNHAHIGGFVGG 354
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 11/173 (6%)
Query: 128 FIGRQWTNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAF 179
F + T+ L+ +N+ +++ + F K+LL +GAK N+LIDKGQ WRL T AF
Sbjct: 138 FENKLLTSGLIVINIAIFLITAFLSGSLFDIDTKVLLDYGAKYNALIDKGQVWRLLTCAF 197
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASG 238
LH+ + H+ N YSL IGP +E+I G +YL +Y S+I +SA+SY +S +VGASG
Sbjct: 198 LHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITASALSYFMSPDSISVGASG 257
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
AIFGL+G+ F RN + K+ + L +VII N+ IGL I IDN+ H+
Sbjct: 258 AIFGLMGALLAFAFIERNKI--QKKYMSSLMQVIIINLFIGLSISNIDNFAHI 308
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK+N LI+ G+ +RL TSAFLH I H+ N +LN IG +E + G +RY+ +Y
Sbjct: 168 LIQMGAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIY 227
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S +SY F NS +VGASGAIFGL+G+ +F ++ R+ + GK+ ++++ + I
Sbjct: 228 VISALGGSVVSYLFKPNSISVGASGAIFGLLGAMLIFGLKERDKI--GKQYMKNILETIG 285
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ IG+ I IDN+ H+GGL+ G S++L
Sbjct: 286 LNVIIGITIPNIDNFAHLGGLILGTITSFIL 316
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++ GAK+N LI+ GQ WRL T FLH +AH+ N Y+L IG +E G +Y+ +Y
Sbjct: 169 LVIMGAKVNELINHGQVWRLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIY 228
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
SA+ S SY F NS +VGASGAIFGL G+ VF +++R+ + GK + +L KV+I
Sbjct: 229 LFSALGGSIFSYIFSPNSISVGASGAIFGLFGAMLVFGVKNRHRI--GKNYVINLFKVVI 286
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ IG+ I IDN GH+GGL+ G I+ L+
Sbjct: 287 INIFIGVTISNIDNAGHIGGLVAGGIIALLV 317
>gi|383761642|ref|YP_005440624.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381910|dbj|BAL98726.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 260
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L GAK+N + G+ WRL T FLH+ + HL+ N Y+L +GP +E G R+L V+
Sbjct: 53 LVLMGAKVNERLAAGELWRLVTPIFLHSGVMHLLFNLYALYILGPMLEGYIGHVRFLAVF 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG-GGKEELQHLAKVII 273
S + + SY +VGASGAIFGL+G+ A+F +R+R+ G G+ LQ++ ++
Sbjct: 113 LISGLYGTLFSYALSGPVSVGASGAIFGLLGAIALFFLRYRDNFGPQGRAILQNMLIILA 172
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYE 311
N+ IG IDNWGH+GGL+GGA + +LG +Y
Sbjct: 173 LNLVIGFSSSYIDNWGHIGGLIGGAFV--MLGVMPRYR 208
>gi|28210270|ref|NP_781214.1| rhomboid family membrane protein [Clostridium tetani E88]
gi|28202706|gb|AAO35151.1| conserved membrane protein (rhomboid family) [Clostridium tetani
E88]
Length = 345
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 116/179 (64%), Gaps = 10/179 (5%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+++N+++Y + D L+ GAK+N LID GQ++RL T FLH +
Sbjct: 167 TFILISMNIIMYFITALLSGNIIDSNIDVLIFLGAKVNPLIDIGQYYRLLTCIFLHGGLI 226
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +N Y+L++IGP +EKI G +YL +YF S I SS +SY +S ++GASGAIFGL+G
Sbjct: 227 HLALNMYALSAIGPLVEKIYGKFKYLAIYFLSGICSSLLSYFMSSSISIGASGAIFGLLG 286
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ + +++++ + GK + ++ VI N+ IG I +DN+GH+GGL+GG IS L+
Sbjct: 287 ACLIISLKYKDRV--GKAFVNNIISVIFVNLIIGFSISNVDNFGHIGGLIGGVVISTLI 343
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 12/208 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+LLA+N +VY+ Q ++ +GQ++RL T LH + HL VN S
Sbjct: 60 TNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMS 119
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC----NSPAVGASGAIFGLVGSFAV 249
+S+GP +E++ G +++ VY + IA + +S C +P+VGASGAIFG+VG++
Sbjct: 120 FSSVGPVVERVMGKAKFVTVYTLAGIAGNVLS---CIVNPRTPSVGASGAIFGMVGAWGA 176
Query: 250 FIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
F + + +LG + L+++A+ ++ N+ G+ IDN GH+GG LGGAA+++L+GP
Sbjct: 177 FCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPR 236
Query: 308 LKYEFTSDDGFRIFSDRAPIFHLIDWKR 335
K G D + F L W R
Sbjct: 237 FKRRLNPYTGQPYIVDES--FKL-GWPR 261
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK N+LI GQ++RL T FLH + HL++N Y+L ++GP +EK G +Y+ +Y
Sbjct: 181 LIFLGAKENTLIASGQYYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIY 240
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS SY F N ++GASGAIF L+G+ V ++ R++ GK+ ++++ VI+
Sbjct: 241 LVGGLISSISSYIFSNGVSIGASGAIFSLLGAILVLTIKMRSV--AGKDVIKNVVSVIVI 298
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
N+ IGL I IDN+ H+GGLLGG +S +L +
Sbjct: 299 NIFIGLAIPNIDNFAHIGGLLGGVFLSIILNTKI 332
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 19/199 (9%)
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAK 161
G NSG S T R L T L+ +N+ ++ +A +T L+++GAK
Sbjct: 124 GVPTNSGFSTASEAVTFRPYL------TYSLIFINLFIFAMMTLAGGSTNTGVLIMFGAK 177
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G++WRL TS FLH + HL N Y+L ++GP +E++ G RYL +Y SS +
Sbjct: 178 VNSLILQGEYWRLFTSMFLHIGVIHLAFNLYALWALGPILEELFGRIRYLLIYISSGVMG 237
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL---GGGKEELQHLAKVIIFNMAI 278
SA S+ F ++ + GASGAIFG++G+ V+ R + L G GK +L +++ N++I
Sbjct: 238 SAASFLFTDAISAGASGAIFGILGALVVY-SRSKPFLWKSGFGK----NLVIIVLINLSI 292
Query: 279 GLLIKGIDNWGHVGGLLGG 297
G GID + H+GGLL G
Sbjct: 293 GFFQPGIDVYAHIGGLLSG 311
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 110/175 (62%), Gaps = 7/175 (4%)
Query: 134 TNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+N++V+ +A +T+ L+L+GAK+N+LI +G++WRL TS FLH HL
Sbjct: 99 TYTLIAINLIVFALMTLAGGSTRTGVLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLA 158
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E++ G RY+ VY S I S S+ F ++ + GASGAIFG++G+
Sbjct: 159 FNLYALWALGPIAEELLGRIRYITVYILSGILGSVASFLFTDAISAGASGAIFGILGALV 218
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
V+ R + G + LA VI+ N+++G GID + H+GGL+ G ++W+
Sbjct: 219 VYSRRKPFLWKSGFG--KSLAVVILINLSLGFFQTGIDVYAHMGGLVSGMLLTWI 271
>gi|212275626|ref|NP_001130636.1| uncharacterized protein LOC100191736 [Zea mays]
gi|194689702|gb|ACF78935.1| unknown [Zea mays]
gi|414589614|tpg|DAA40185.1| TPA: hypothetical protein ZEAMMB73_944913 [Zea mays]
Length = 148
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%)
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ NC+SLNSIGP +E + GPRRYL VYFSSA+A S MSYRF SPAVGASGAIFGLVG+
Sbjct: 2 MQFNCFSLNSIGPMVEMLSGPRRYLAVYFSSALAGSLMSYRFSASPAVGASGAIFGLVGA 61
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
+AV++ RHR G +E L+H+ +V++ NM
Sbjct: 62 YAVYMWRHRRFFGNSRESLEHIGRVVVLNM 91
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ IGL I IDN+ HVGGLLGG +S LL
Sbjct: 164 NIFIGLAIPNIDNFAHVGGLLGGVFLSILL 193
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GA N+L+ GQ++RL T FLH + HL++N Y+LN++GP +EK G +Y+ +Y
Sbjct: 46 LIFLGANENTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ SS S+ F N ++GASGAIF L+G+ V ++ R+++ GK+ ++++ VI+
Sbjct: 106 LLGGLISSISSFIFSNGVSIGASGAIFSLLGAILVLTIKMRSVV--GKDTIKNVISVIVV 163
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ IGL I IDN+ HVGGLLGG +S LL
Sbjct: 164 NIFIGLAIPNIDNFAHVGGLLGGVFLSILL 193
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSASVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|168186765|ref|ZP_02621400.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
gi|169295367|gb|EDS77500.1| conserved membrane protein [Clostridium botulinum C str. Eklund]
Length = 202
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ T IL+ +NVLVYI + LL GA N+L+ GQ++RL T FLH
Sbjct: 22 RVTFILITINVLVYIITAILSENILDSDIRVLLFLGANENTLVSSGQYYRLITCMFLHGG 81
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL +N Y+L +IGP +E+I G +Y+ +Y + SS SY F ++GASGAIF L
Sbjct: 82 LVHLALNMYALEAIGPIVERIYGKMKYIIIYLVGGLISSLSSYVFSTGVSIGASGAIFAL 141
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+G+ V ++ R+++ GK ++++ VI N+ IGL I IDN+ H
Sbjct: 142 LGAMFVLTIKMRDVV--GKAVIKNIVSVIGINIFIGLAIPNIDNFAH 186
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 11/177 (6%)
Query: 123 ARTNLFIGRQWTNILLAVNVLVYIA----QFATQDK----LLLWGAKINSLIDKGQFWRL 174
+ N F + T IL+ +NV++++ F D L+ +GAK+N LI++GQ WRL
Sbjct: 136 VKKNFFQYQVLTYILIGINVIIFLLTAFLSFDIYDINTGILIDFGAKVNILINQGQIWRL 195
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA 233
T AFLH+ + H+ N YSL IGP +++I G +YL +Y S + +S +SY NS +
Sbjct: 196 FTCAFLHSGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTASLLSYYMSPNSIS 255
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
VGASGAIFGL+G+ F + RN + K L + +VI N+ IGL IK IDN+ H
Sbjct: 256 VGASGAIFGLMGALLAFAIIERNRI--QKRFLFSIMQVISINLFIGLSIKNIDNFAH 310
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 134 TNILLAVNVLVYIAQF---ATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV+V++ TQ+ L+ +GAK+N+LID GQ+WRL TS F+H HL+
Sbjct: 19 TYLLVLINVVVFLVMELAGGTQNPYVLIFFGAKMNTLIDAGQYWRLLTSMFIHIGFTHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L +G E++ G R+L +Y S +A S +SY + + GASGAIFGL+G+
Sbjct: 79 FNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGPELSAGASGAIFGLLGAII 138
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ R G + +LA V+ N+ G++ GIDN+ H+GGL GGA S LL
Sbjct: 139 IYGCRKPAFWRTGL--ITNLAIVLGINLVFGVVFSGIDNFAHLGGLFGGAVSSALL 192
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 10/211 (4%)
Query: 100 LSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVY----IAQFATQDK 154
LS+ + S +E + +AR+ G + T L+A+N++V+ +A +T+
Sbjct: 118 LSYLEVNSSSSASVYETSESTPSARSGQ--GPPYLTYTLIAINLIVFGLMTLAGGSTRTG 175
Query: 155 -LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+L+GAK+N+LI +G++WRL TS FLH HL N Y+L ++G E++ G RY+ V
Sbjct: 176 VLILFGAKVNALIIQGEYWRLFTSMFLHIGFLHLAFNLYALWALGAIAEELLGRVRYITV 235
Query: 214 YFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
Y S I S S+ F ++ + GASGAIFG++G+ V+ R + G + LA V++
Sbjct: 236 YILSGILGSVASFFFTDAISAGASGAIFGILGALVVYSRRKPFLWKSGFG--KSLAVVVL 293
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ +G GID + H+GGL+ G +WL+
Sbjct: 294 INLGLGFFQTGIDVYAHLGGLVTGMLFTWLI 324
>gi|384251749|gb|EIE25226.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 278
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 17/215 (7%)
Query: 104 NGGGTRKNSG---HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT--------Q 152
+GGG+ + +G G++ D ++ LL +N+ VY A A
Sbjct: 52 DGGGSYQRTGAPMKAGSNKFDIPAVKPYLAYA----LLFLNLAVYGAGIAVALTQGNDAS 107
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++ L AK+N + G+F+RL T FLHA I HL +NC++L SIGP +E + G +
Sbjct: 108 NEWFLSLAKVNEKVASGEFYRLLTCTFLHAGILHLGLNCWALYSIGPEVEGVMGYSTFAA 167
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S +A S S+ F + VGASGAIFGL+G+ A + +R+R L G ++L ++A ++
Sbjct: 168 IYVLSGLAGSTASFLFSDLITVGASGAIFGLLGATAGYFLRNRA-LQGSTQQLTYIAGIV 226
Query: 273 IFNMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGP 306
N+ +G IDN GH+GGL G A+ +++ P
Sbjct: 227 ALNIFLGASPGSMIDNSGHLGGLFTGVALGYIMAP 261
>gi|325289903|ref|YP_004266084.1| rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965304|gb|ADY56083.1| Rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
Length = 189
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN L +N+LV++ Q L+++GAK+N LID GQ+WRL TS F+H I HL+
Sbjct: 12 TNTFLIMNILVFLVMTLAGGTTNQVVLVIFGAKVNQLIDLGQYWRLLTSIFIHIGIVHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N Y+L ++G E + G ++ +Y S I + SY F + + GASGAIFGL+G+
Sbjct: 72 LNSYALIAVGQISEAVFGHLKFALLYLLSGIGGATASYLFSEAISAGASGAIFGLLGALV 131
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ ++ + G + +L VI FN+ GL+ GIDN+ H+GG+L G I
Sbjct: 132 SYGWKNAGMWRSGL--IANLLFVIGFNILFGLITTGIDNYAHIGGMLTGLII 181
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ILL V V VY+ Q ++ D LL GAK N+LI +G+FWRL T FLH ++ H+
Sbjct: 39 TYILLGVTVGVYLLQMLSRPLFGYDLLLAMGAKSNTLIQQGEFWRLITPMFLHVSLPHIA 98
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L + G ++E+ G RR+L +YF + +SY + GAS A+FG+V + A
Sbjct: 99 FNMYALYAFGVSLERHYGRRRFLLLYFIGGLGGVVLSYLLSPENSAGASTALFGVVAAEA 158
Query: 249 VFIMRHRNILGGGKEELQHL---AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
VF+ +R GKE + L +I N+ +G L GIDNWGH+GGL+ G
Sbjct: 159 VFLYYNRRWF--GKEAVSALWNTVFIIGINLVLG-LSPGIDNWGHLGGLIAGGV 209
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 8/174 (4%)
Query: 130 GRQWTNI-LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
G+ + I L +NV ++ + L+ +GAK N LI +G++WRL T FLH
Sbjct: 202 GKPYLTISFLVINVFIFMFLEWVGSSTDPQTLITYGAKWNPLIIEGEYWRLVTPMFLHIG 261
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
I HLM N +L +G +E+I G R+L +Y + I+ + S+ F + A GASGAIFG
Sbjct: 262 IWHLMFNSLALYFLGGAVERIFGSFRFLWIYMFAGISGTLASFAFTPNLAAGASGAIFGC 321
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F ++ RN+ + + ++IFN+AIG +I IDN+GH+GGL+GG
Sbjct: 322 FGALLYFGLKRRNLF--FRTIGMDIIFILIFNLAIGFIIPMIDNYGHIGGLIGG 373
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
IL+ +N +VY A +++L GAK + LID GQ++RL T FLHA I H+
Sbjct: 146 ILIVINFIVYGISAWLSGNPVAISNQVLNFMGAKNSVLIDNGQYYRLITCMFLHAGITHI 205
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
N YSL S+G +E I G RY +YF S I +S SY F S +VGASGAIFGL+G+
Sbjct: 206 GANMYSLYSMGYMLENIYGKLRYTAIYFISGITASFFSYIFSRESLSVGASGAIFGLLGA 265
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
VF + R + GK ++ V N+ I I ID + H GG LGG +S +LG
Sbjct: 266 AIVFGFKLRKRI--GKAFFANMVGVFALNIFISFTIPNIDIFAHFGGFLGGVVVSVILGR 323
Query: 307 AL 308
+
Sbjct: 324 TI 325
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 24/176 (13%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A+N+LVY+A + ++ +GAK+N+LI +G++WR T FLH ++ HL+
Sbjct: 188 LIAINILVYLALVLYERTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHGSLMHLL 247
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
VNCYSL IG +E++ G R++ Y + I + S+ F P+VGASGAIFGL+G
Sbjct: 248 VNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSFLFVPGPSVGASGAIFGLMGILL 307
Query: 249 VFIMRHRNILGGGKEELQ-------HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F G + LQ + I+ N+ G GIDN+ H+GGL+GG
Sbjct: 308 YF---------GLERPLQFKVYFGSSIITTILINLVYGFSSTGIDNFAHLGGLIGG 354
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L +N++V+I Q L+ +GAK+N LI G+ WR TS F+H HL+
Sbjct: 135 TYVLFGINIVVFILMTLAGGSENQSVLIAFGAKVNPLIQAGELWRFLTSVFIHIGFLHLL 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L S+GP E+ G R+L +Y S + S SY F + + GASGAIFGL+G+
Sbjct: 195 FNLYALWSLGPISERNFGHWRFLVIYIMSGLGGSIASYFFSTALSAGASGAIFGLLGALL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++ ++ G +L VII N GL GIDN+ H+GGL+ G + LL
Sbjct: 255 YYSLKRPSLWKSGLG--MNLVIVIIINFGFGLTQPGIDNYAHLGGLIIGFLTTMLL 308
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 137 LLAVNVLVYI------AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++A+N++VY+ + F D +L GAK N+LI+ G+++RL T FLH+ I H+
Sbjct: 142 IIAINIVVYVISAILSSNFFDIDIRVLDFLGAKDNTLINSGEYYRLFTCMFLHSGIVHIA 201
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N YSL SIG +E I G ++Y+ +Y S + +S SY F + +VGASGAIFG++G
Sbjct: 202 SNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIASLFSYVFSSGISVGASGAIFGVLG--G 259
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
V ++ H+ GK +++ VI N+ I I ID H+GGL+ G ISW + P
Sbjct: 260 VLVISHKLKHRIGKGLFRNIIFVIAINLFISFTIPNIDISAHLGGLISGIIISWFIFP 317
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 5/191 (2%)
Query: 109 RKNSGHEGTSHLDTARTNLFIGRQWTNIL--LAVNVLVYIAQFATQDKLLLWGAKINSLI 166
K S H +D + G N+L L +N+ + Q + +GAK NSLI
Sbjct: 169 EKESNHPSARFIDKVPFITY-GLIIINVLMWLVMNIYALVKGTNVQSLFIPFGAKENSLI 227
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226
G++WR T FLHA++ HL++NC SL G +E + G ++++ +YF + I S S+
Sbjct: 228 FAGEYWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGIMGSIASF 287
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
F AVGASGAIFGL+G+ F + + + K + ++I N+ G + GID
Sbjct: 288 MFSPHSAVGASGAIFGLMGALLYFSVENPALF--KKYFGNSILLMVIINLVYGFIRPGID 345
Query: 287 NWGHVGGLLGG 297
N+GH+GGL+GG
Sbjct: 346 NYGHIGGLIGG 356
>gi|153955340|ref|YP_001396105.1| hypothetical protein CKL_2722 [Clostridium kluyveri DSM 555]
gi|219855759|ref|YP_002472881.1| hypothetical protein CKR_2416 [Clostridium kluyveri NBRC 12016]
gi|146348198|gb|EDK34734.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569483|dbj|BAH07467.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 338
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 10/163 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A+NVLVYI + + L+ GAK+N LI KGQ++RL T FLHA I
Sbjct: 154 TYVIIALNVLVYIVTSYLSGSIMDSNVNVLVFMGAKVNFLIAKGQYYRLFTCMFLHAGIV 213
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL VN YSL +G +EK+ G +Y+ +Y S + SS SY F +S +VGASGAIFGL+G
Sbjct: 214 HLGVNMYSLYMMGTFIEKVYGKLKYIIIYIISGLFSSIFSYMFSSSISVGASGAIFGLLG 273
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
+ VF ++ ++ +E + ++ +I+ N+ IG I +DN+
Sbjct: 274 ASLVFALKMKH--SVAREFIMNIVAIIVMNLIIGFSIANVDNF 314
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 8/195 (4%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVY----IAQFATQDK-LLLWGAKINSLIDKG 169
E + + RTN F+ T IL A+N++V+ +A +T K L+L+GAK+N LI +G
Sbjct: 133 ERDKYFEFFRTNKFVPYV-TIILAAINIIVFSLMTLAGGSTNTKNLILFGAKVNELILQG 191
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL TS F+H HL N Y+L +G E+ G R+L +Y S +A S S+ F
Sbjct: 192 QVWRLFTSMFIHIGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGSVTSFLFT 251
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
++ + GASGAIFG++G+ + ++ + G ++L +I N+ IGL+ ID +
Sbjct: 252 DALSAGASGAIFGILGALVPYSWKNPRLWKSGFG--KNLVVIIAINLGIGLIQPQIDIYA 309
Query: 290 HVGGLLGGAAISWLL 304
H+GGLL G AI +L
Sbjct: 310 HLGGLLIGLAIGFLF 324
>gi|295397321|ref|ZP_06807413.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
gi|294974395|gb|EFG50130.1| rhomboid family protein [Aerococcus viridans ATCC 11563]
Length = 223
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 18/182 (9%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL + ++++I +F + LLL+GAK N LI G++WRL T FLH I HL+
Sbjct: 9 TYTLLGIQIILFIMMEFMGSSESSATLLLFGAKFNPLIAAGEYWRLITPMFLHIGIVHLL 68
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RYL +Y +S + + SY+F + + GAS A+FGL FA
Sbjct: 69 INSITLYYLGSMVENIAGHWRYLVIYLASGLMGNLFSYQFSENISAGASTALFGL---FA 125
Query: 249 VFIM------RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
VF+ R+R+I G Q+L V I N+ G++ GID WGHVGGL+GG ++
Sbjct: 126 VFLALKNLFPRNRHIQSIGS---QYLTLVGI-NLVFGMMGSGIDIWGHVGGLVGGFLVTM 181
Query: 303 LL 304
L
Sbjct: 182 AL 183
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VF--IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F + RH + G ++ +I+ N+ G+++ GIDN GH+GGL+GG
Sbjct: 306 YFGTVYRHLFLQTIGT----NIIGLIVINLVFGMIVPGIDNAGHIGGLIGG 352
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 134 TNILLAVNVLVYI-------AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+A+N+ +++ +KLL +G+K N+ I +GQ+WR T FLHANI
Sbjct: 185 TYILIALNLFIFVIMGIYSWETGIDYNKLLFEFGSKENTSIIQGQYWRFITPMFLHANIM 244
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ +NCY+L IG E+I G +++ +YF + I + S+ F ++P VGASGAIFGL G
Sbjct: 245 HVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGNIFSFAFNSNPGVGASGAIFGLFG 304
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ + + G ++ I+ N+ G GIDN+ H+GGL+GG ++ +
Sbjct: 305 AVLFKCIEKPALFKSGLG--PNILGAILINLFYGFSKSGIDNFAHLGGLIGGFTVAGIFN 362
Query: 306 PALK 309
+ K
Sbjct: 363 ESRK 366
>gi|156741085|ref|YP_001431214.1| rhomboid family protein [Roseiflexus castenholzii DSM 13941]
gi|156232413|gb|ABU57196.1| Rhomboid family protein [Roseiflexus castenholzii DSM 13941]
Length = 281
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWT-NILLAVNVLVYIAQ-------------FATQDKLLL 157
+G E + R LF W +LL +N++V++ + D LL+
Sbjct: 30 AGPEPSPAAVQVRFPLF--TPWVARVLLTINIIVFVVPSFLDVIGVRIAGTVSVYDFLLI 87
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGAK N+ I GQ++R T+ FLH +AHL N ++L S+G E++ G +R+L +Y
Sbjct: 88 WGAKDNAAIFVGGQYYRFLTAMFLHGGLAHLFFNSFALYSLGFETERLFGAQRFLAIYML 147
Query: 217 SAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFN 275
+ + SY +P+VGASGAIFGL+G+ F + R +LGG +++L L + + N
Sbjct: 148 AGLGGGVASYALNPNPSVGASGAIFGLIGALIAFYLVARRVLGGIARQQLGSLIFITLIN 207
Query: 276 MAIGLLIKGIDNWGHV 291
+A+G IDN H+
Sbjct: 208 LALGFTTPYIDNNAHI 223
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWSGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F +R++ + ++ +I+ N+ G+++ GIDN GH+GGL+GG
Sbjct: 306 YFGTVYRHLF--WQTIGTNIIGLIVINLVFGMIVPGIDNAGHIGGLIGG 352
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I +A+ V+V++ D L+ +GAK N LI G++WR T FLH HL+
Sbjct: 186 TYIFIALQVIVFLLMEWNGGSTNPDVLIKYGAKFNPLIQAGEWWRFFTPIFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N ++L +G T+E++ G R+ +YF++ + S+ F S + GASGAIFGL G+
Sbjct: 246 MNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLFTASLSAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F +R++ + ++ +I+ N+ G+++ GIDN GH+GGL+GG
Sbjct: 306 YFGTVYRHLF--WQTIGTNIIGLIVINLVFGMIVPGIDNAGHIGGLIGG 352
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 6/205 (2%)
Query: 129 IGR-QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAH 186
IGR W++ ++ N+ + AQ A + WG K++ I +G+ +RL T FLH H
Sbjct: 83 IGRLSWSSRIIWTNIATFAAQ-AWKPSFTQWGIKVSEKILRGEELYRLITPVFLHGGFGH 141
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
+ N SL+ +GP +E++ G R+L Y S + + +S +P +GASGA+FG+VG+
Sbjct: 142 IFTNMISLSRVGPDVERLFGSGRFLTTYMVSGMTGNLLSAYMSPNPGLGASGAVFGVVGA 201
Query: 247 FAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ VF+ R+ +LG G+ + + ++FN+ +G L IDNW H+GG LGGAA+ + G
Sbjct: 202 YYVFLTRNEWLLGPAGQSVTSSITQTMLFNIFLGALNPVIDNWAHLGGALGGAAMGYYFG 261
Query: 306 PALKYEFTSDDGFRIFSDRAPIFHL 330
P L Y +G RI DR PI L
Sbjct: 262 PRL-YLVELPEGGRIVMDR-PIARL 284
>gi|56420981|ref|YP_148299.1| hypothetical protein GK2446 [Geobacillus kaustophilus HTA426]
gi|56380823|dbj|BAD76731.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 390
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 186 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 241
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 242 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 301
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ +II N+ GLL+ GIDN GH+GGL+GG
Sbjct: 302 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGHIGGLVGG 352
>gi|452991452|emb|CCQ97320.1| putative Rhomboid protease [Clostridium ultunense Esp]
Length = 400
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 11/172 (6%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
WT +L+A+N+LV++ + L+ +GAK N I G++WRL TS FLH+ H+
Sbjct: 194 WTYVLVAINLLVFLWLTVNGGSQNPETLIRFGAKYNPAIKAGEWWRLITSIFLHSGFFHV 253
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N +L +G +E++ G R+L +YF + + S S+ + ++ +VG+SGAI+GL G+
Sbjct: 254 ALNSIALYYLGLLVERMYGRARFLLIYFMAGLLGSVASFLYSDTVSVGSSGAIYGLFGAL 313
Query: 248 AVFIMRHRNIL--GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F MR R++ GK+ L +I N+ I +L+ ID + H+GGL+GG
Sbjct: 314 LFFGMRRRDLFFRSFGKD----LLFIIGLNLLISVLVPSIDLYAHLGGLVGG 361
>gi|375009531|ref|YP_004983164.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288380|gb|AEV20064.1| Rhomboid [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 389
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 185 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 241 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ +II N+ GLL+ GIDN GH+GGL+GG
Sbjct: 301 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGHIGGLVGG 351
>gi|297529385|ref|YP_003670660.1| rhomboid family protein [Geobacillus sp. C56-T3]
gi|297252637|gb|ADI26083.1| Rhomboid family protein [Geobacillus sp. C56-T3]
Length = 386
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 182 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 238 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ +II N+ GLL+ GIDN GH+GGL+GG
Sbjct: 298 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGHIGGLVGG 348
>gi|261417690|ref|YP_003251372.1| rhomboid family protein [Geobacillus sp. Y412MC61]
gi|319767503|ref|YP_004133004.1| rhomboid family protein [Geobacillus sp. Y412MC52]
gi|261374147|gb|ACX76890.1| Rhomboid family protein [Geobacillus sp. Y412MC61]
gi|317112369|gb|ADU94861.1| Rhomboid family protein [Geobacillus sp. Y412MC52]
Length = 386
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 182 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 238 LHLLTNTLALYYLGITVERLYGSLRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ +II N+ GLL+ GIDN GH+GGL+GG
Sbjct: 298 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGHIGGLVGG 348
>gi|448238728|ref|YP_007402786.1| rhomboid family protein [Geobacillus sp. GHH01]
gi|445207570|gb|AGE23035.1| rhomboid family protein [Geobacillus sp. GHH01]
Length = 389
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q L VL + D L+ +GAK N LI+ G++WRL T FLH
Sbjct: 185 TRLFIVVQVAMFL----VLEWSGGSTNPDVLIHYGAKFNPLIEAGEWWRLLTPMFLHIGF 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N +L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL
Sbjct: 241 LHLLTNTLALYYLGITVERLYGSFRFLFIYVTAGFFGALASFLFTPSLSAGASGAIFGLF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ +II N+ GLL+ GIDN GH+GGL+GG
Sbjct: 301 GALLYFGTVYRHLF--FRTMGMNVISLIIVNLLFGLLVPGIDNAGHIGGLVGG 351
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 7/169 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 182 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 241
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 242 TNTFALYYLGITVERLYGSLRFLLIYTTAGFFGTLASFLFTPSISAGASGAIFGLFGALL 301
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F +R++ + ++ +I+ N+ GLL+ GIDN GH+GGL+GG
Sbjct: 302 YFGTVYRHLF--FRTMGMNVVSLIVVNLLFGLLVPGIDNAGHIGGLVGG 348
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 7/169 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ V V++++ + +T +L+ +GAK N LI+ G++WR T FLH HL+
Sbjct: 186 TRLLIVVQVVMFLILEWSGGSTDPSVLIRYGAKFNPLIEMGEWWRFLTPMFLHIGFLHLL 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N ++L +G T+E++ G R+L +Y ++ + S+ F S + GASGAIFGL G+
Sbjct: 246 TNTFALYYLGITVERLYGSLRFLLIYATAGFFGTLASFLFTPSISAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F +R++ + ++ +I+ N+ GLL+ GIDN GH+GGL+GG
Sbjct: 306 YFGTVYRHLF--FRTMGMNVISLIVVNLLFGLLVPGIDNAGHIGGLVGG 352
>gi|170756233|ref|YP_001780053.1| membrane associated peptidase [Clostridium botulinum B1 str. Okra]
gi|429244301|ref|ZP_19207768.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
gi|169121445|gb|ACA45281.1| putative membrane associated peptidase [Clostridium botulinum B1
str. Okra]
gi|428758682|gb|EKX81087.1| membrane associated peptidase [Clostridium botulinum CFSAN001628]
Length = 341
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 AKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|153938565|ref|YP_001389769.1| S54 family peptidase [Clostridium botulinum F str. Langeland]
gi|384460841|ref|YP_005673436.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
gi|152934461|gb|ABS39959.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
Langeland]
gi|295317858|gb|ADF98235.1| peptidase, S54 (rhomboid) family [Clostridium botulinum F str.
230613]
Length = 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|168177744|ref|ZP_02612408.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|387816637|ref|YP_005676981.1| membrane protein [Clostridium botulinum H04402 065]
gi|182671461|gb|EDT83435.1| putative membrane associated peptidase [Clostridium botulinum NCTC
2916]
gi|322804678|emb|CBZ02230.1| conserved membrane protein [Clostridium botulinum H04402 065]
Length = 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|226947631|ref|YP_002802722.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
gi|226842288|gb|ACO84954.1| peptidase, S54 [Clostridium botulinum A2 str. Kyoto]
Length = 340
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S I SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGILSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYANRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|410725976|ref|ZP_11364264.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410601611|gb|EKQ56119.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 512
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 14/186 (7%)
Query: 134 TNILLAVNVLVYI----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A+N+L++ + T LL +G+K N I +G++WR FLH N
Sbjct: 185 TYILIALNLLIFALMGLYSWKSGTDYNTL--LLEFGSKENEHILQGEYWRFIAPIFLHVN 242
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
I H+ +NCYSL +G EKI G +++ +YF++ I + S+ F +P GASGAIFGL
Sbjct: 243 IVHVALNCYSLYLVGILAEKIFGKGKFIAIYFAAGILGNIFSFAFNMNPGAGASGAIFGL 302
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G+ + + G ++ +I N+ G GIDN+ H+GGL+GG + +
Sbjct: 303 FGAILFICIEKPALFKSGLG--YNIVGIICINLFYGFTKSGIDNFAHLGGLIGGLTFAGI 360
Query: 304 LGPALK 309
+ K
Sbjct: 361 FNESKK 366
>gi|148378401|ref|YP_001252942.1| membrane associated peptidase [Clostridium botulinum A str. ATCC
3502]
gi|148287885|emb|CAL81951.1| putative membrane associated peptidase [Clostridium botulinum A
str. ATCC 3502]
Length = 337
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
+YL +YF S + SS SY F +S ++GASGAIFG++G A I+ + N GGKE L +
Sbjct: 239 VKYLIIYFISGVLSSYFSYLFSSSVSIGASGAIFGILG--ATLIIAYTNRKKGGKEFLNN 296
Query: 268 LAKVIIFNMAIGLLIKGIDNW 288
+ VI+ N+ +G I +DN+
Sbjct: 297 IISVIVVNLILGFSIPNVDNF 317
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 107/193 (55%), Gaps = 18/193 (9%)
Query: 132 QWTNILLAVNVLVYI---AQFATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
Q T ILLAVN+L+++ +Q +T L+ +GAK N I +G++WR+ +S FLH + H
Sbjct: 183 QMTYILLAVNILLFMFVESQGSTTSVSTLIEFGAKYNPAIMEGEWWRIGSSMFLHIGLLH 242
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N +L IG +E+I G R+ +Y + I S+ A GASGAIFGL G+
Sbjct: 243 LLMNMLALYYIGIAVERIYGTWRFSVIYLLAGIFGGVASFMLNPHVAAGASGAIFGLFGA 302
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS----- 301
F +RHR + K +L VI N+A G+++ +DN H+GGL+GG S
Sbjct: 303 LLYFGVRHRQLF--FKTMGWNLIFVIALNIAFGIMVPQVDNGAHMGGLIGGFIASAGFNL 360
Query: 302 ------WLLGPAL 308
WL G AL
Sbjct: 361 PKRNDKWLQGIAL 373
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 115 EGTSHLDTARTNLFIGRQW-----TNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
EG ++ ++ + W T I++ +N++ ++ LL +G K
Sbjct: 120 EGVLQVNKNKSTYYEKEYWKYKNLTFIIMGINIVTFLLTALLSGNIFNIDYWVLLKYGGK 179
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N LI++GQ+WRL T AFLH + H++ N YSL +GP +++I G +Y +Y S + S
Sbjct: 180 VNELINQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTS 239
Query: 222 SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
S +SY +VGASG IFGL+G+ VF + R + K L L + + N+ IG
Sbjct: 240 SLLSYFMSPYLSVGASGGIFGLMGALVVFAIIERKRI--NKRYLSSLLQAMGVNLFIGFS 297
Query: 282 IKGIDNWGH 290
I IDN+ H
Sbjct: 298 ISNIDNFAH 306
>gi|344175988|emb|CCA87141.1| putative rhomboid protease [Ralstonia syzygii R24]
Length = 543
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATPGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL++N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLVINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G++ V I R+R + K L L +++++ GL G+DN H+GGL+GG ++
Sbjct: 302 AGAWLVAICRYRGQMPATLSKRLLTQLGMFVLYSLVQGLTKPGVDNAAHIGGLVGGCMLA 361
Query: 302 WLLGPALKYEFTSDDGFRIFSDR 324
+L PA F D R+ R
Sbjct: 362 LIL-PA---RFDMDRYRRLLPGR 380
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
K+L W GAK N++I G+++RL TS FLH+ I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 KILYWMGAKHNNAIIFHGEYYRLVTSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 VIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
I+ N+ IGL + ID H GG + GA +
Sbjct: 302 ILLNVFIGLSMSNIDISAHFGGFIAGAIL 330
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 19/184 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---------------KLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ + ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVANALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I +S S F VGA
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFSLYFSPVMGVGA 268
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
SGAIFGL+G+ VF ++ + GK + ++ +I+ N+ IGL + ID H GG +
Sbjct: 269 SGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVIILLNVFIGLSMSNIDISAHFGGFIA 326
Query: 297 GAAI 300
GA +
Sbjct: 327 GAIL 330
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 16/206 (7%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVLV++A D L G + G++WRL ++ FLHA +
Sbjct: 182 THALIALNVLVWLATLGLGGNLLQTPIDVLFKLGGNAAFEVQHGEWWRLLSATFLHAGVL 241
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL +N L + G +E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 242 HLAINVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G++ + I R+R + K L L +++++ GL G+DN H+GGL+GG ++
Sbjct: 302 AGAWLMAICRYRGQMPETLSKRLLTQLGVFVLYSLVQGLTKPGVDNAAHIGGLVGGCMLA 361
Query: 302 WLLGPALKYEFTSDDGFRIFSDRAPI 327
+L PA F D R+ RA +
Sbjct: 362 LIL-PA---RFDMDRYRRLLPGRAAM 383
>gi|149181994|ref|ZP_01860480.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
gi|148850259|gb|EDL64423.1| hypothetical protein BSG1_06322 [Bacillus sp. SG-1]
Length = 485
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 133 WTNILLAVNVLVY-IAQFA--TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I +A+ +LV+ + + A TQD L+ +GAK N LI G++WR T +H H+
Sbjct: 158 FTYIFIALQLLVFFVMEMAGGTQDTENLIRFGAKYNPLIVDGEWWRFFTPIVIHIGFLHM 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +GP +E+I G R+L +Y + + + S+ F +S + GASGAIFG G+
Sbjct: 218 LMNTFALYFLGPAVERIFGSARFLFIYLFAGFSGTLASFVFNDSLSAGASGAIFGCFGAL 277
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
F H I + ++ VI N+A G I GIDN GH+GGL GGA
Sbjct: 278 LYFGTAHPKIF--FRTMGTNILVVIGINLAFGFTIPGIDNAGHIGGLAGGA 326
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
I+ N+ IGL + ID H GG + GA +
Sbjct: 302 ILLNVFIGLSMSNIDISAHFGGFIAGAIL 330
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
I+ N+ IGL + ID H GG + GA +
Sbjct: 302 ILLNVFIGLSMSNIDISAHFGGFIAGAIL 330
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 10/178 (5%)
Query: 134 TNILLAVNVLVYI----AQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLAVNV +++ A +T + L+ +GAK N I +G++WRL TS FLH + HLM
Sbjct: 184 TYLLLAVNVALFLLLEWAGGSTNVETLIEYGAKFNPAIMEGEWWRLVTSMFLHIGLIHLM 243
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E+I G RY+ +Y + + S S+ + GASGAIFGL G+
Sbjct: 244 MNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSVASFMLNPQVSAGASGAIFGLFGALL 303
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG---AAISWL 303
F + +R + + +L +I N+A GL + IDN H+GGL+GG AAIS L
Sbjct: 304 YFGVWNRRLF--FQTMGWNLLFIIGLNIAFGLFVPQIDNGAHMGGLIGGFIAAAISQL 359
>gi|159900030|ref|YP_001546277.1| rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893069|gb|ABX06149.1| Rhomboid family protein [Herpetosiphon aurantiacus DSM 785]
Length = 286
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK + L+D G++WRL T+ LH I H+ N Y+L ++GPT+E+ G R+ +Y +
Sbjct: 69 GAKWSPLMDIGGEWWRLFTATVLHGGIVHIGFNMYALYALGPTVERFYGSLRFSVIYLIA 128
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIF 274
I + SY F P++GASGAIFGL+G F + R++LG ++ L+ +
Sbjct: 129 GIGGAWASYSFGSLTGPSIGASGAIFGLIGCLIGFFLSARSVLGDFARQNLRQMVGTAAI 188
Query: 275 NMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGPALKY 310
N+ IGL IDN+ H+GG+L G A+ + L P L Y
Sbjct: 189 NLIIGLSFSSVIDNYAHIGGMLMGLAVGYGLAPRLVY 225
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T ++A N+L + QFATQD L G L+ GQ+WR+ +S FLH +I H+ N Y
Sbjct: 11 TLTIMAANILFFAGQFATQDMLTNMGLLYGPLVQDGQYWRMISSGFLHGSILHIAFNMYL 70
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
L +GP +E G R+ +YF + I + +S+ F P +GASGA+ GL G A+FI
Sbjct: 71 LYMLGPQLESALGSVRFSLMYFGALIGGTLAVLSFGFMQ-PTLGASGAVLGLAG--AMFI 127
Query: 252 -MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ R I + +++ N+ + LLI GI WGH GG++ G A+++++
Sbjct: 128 TLWGRGI----SPTKSPVFGLVVLNLGLPLLIPGISFWGHFGGVVAGGALAYVM 177
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ L+A+NVL ++A D L G + +G++WRL ++ FLHA +
Sbjct: 208 THALIALNVLAWLATLVLGGNPLQTPTDVLFNLGGNAAFEVQQGEWWRLLSATFLHAGVL 267
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGL 243
HL VN L + G T+E+I GP YL +Y + + SA+S F A VGASGA+FG+
Sbjct: 268 HLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 327
Query: 244 VGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G++ V I ++R + K L + +++++ GL G+DN HVGGL+GG ++
Sbjct: 328 AGAWLVAIRQYRGRMPETLSKRLLTQIGLFVLYSLVQGLTKPGVDNAAHVGGLIGGCLLA 387
Query: 302 WLL 304
+L
Sbjct: 388 CIL 390
>gi|421896459|ref|ZP_16326856.1| membrane protein [Ralstonia solanacearum MolK2]
gi|206587624|emb|CAQ18206.1| membrane protein [Ralstonia solanacearum MolK2]
Length = 458
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 24/191 (12%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 95 RFTYALIALNVLAWLV------TLLLGGNPLQTPISILFNLGGNAAFEVQHGEWWRLLSA 148
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G T+E+I GP YL +Y + + SA+S F A VG
Sbjct: 149 TFLHAGVLHLAINMVGLYATGITVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 208
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H+GG
Sbjct: 209 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAHIGG 268
Query: 294 LLGGAAISWLL 304
L+GG ++ +L
Sbjct: 269 LVGGCVLAMIL 279
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T + +N+LV++ QD L+ +GAK+NSLI GQ WRL TS F+H HL
Sbjct: 135 TYAFIGINLLVFLLMTLAGGSENQDVLIAFGAKVNSLIQAGQVWRLLTSMFIHIGYFHLA 194
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L ++GP E G +Y +Y S + + S+ F + GASGAI GL+G+
Sbjct: 195 FNLYALWALGPLTELSYGHGKYFAIYMLSGLGGAMASFLFSPFLSAGASGAIMGLLGAQL 254
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG----GAAISW 302
FI + + G +L VI+ N+ G GIDN+ H+GGL GA +SW
Sbjct: 255 FFIYKRPYLWKSGLG--MNLVIVILVNLGFGFWQPGIDNFAHLGGLFTGMFMGALLSW 310
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T+ L A+ +L ++ Q ++ GAK+N+ I G+++RL T FLH N HL+VN S
Sbjct: 254 TDWLAAITILSFLLQLWAGPAYVMAGAKVNAAIRTGEWYRLFTPLFLHGNTLHLIVNLSS 313
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
L S+GP +E G RRY +Y S + + S+ F +P+VGAS AIFGL+G+ A F +
Sbjct: 314 LKSLGPQIEATYGHRRYAALYLLSGLTGNLFSFFFNTAPSVGASSAIFGLIGAMAAFYVS 373
Query: 254 HRNILGGGKEE--LQHLAKVIIFNMAIGLLIKG-IDNWGHVGGLLGGAAISWLLGPAL 308
+ + G L+++A V + N+ GL IDN+GH+GGLLGGA L GP L
Sbjct: 374 NTDWFGREHSHRVLRNIAWVTLLNLGQGLAPASRIDNFGHLGGLLGGAVFGVLFGPRL 431
>gi|365851709|ref|ZP_09392132.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
gi|363716222|gb|EHL99633.1| peptidase, S54 family [Lactobacillus parafarraginis F0439]
Length = 211
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 14/178 (7%)
Query: 137 LLAVNVLVY-IAQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LL + V+VY I F+ LL +GAK N LI G++WRL + F+H H+++N
Sbjct: 5 LLGIMVIVYVIMTFSGGTENTTTLLTFGAKFNPLIRAGEYWRLVSPIFIHIGFTHILMNG 64
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L IG +E + G R+LG++ +S I + S+ F +S + GAS AIFGL G+F +
Sbjct: 65 ITLYFIGQYVEMLFGHWRFLGIFLTSGIVGNLASFAFSDSLSAGASTAIFGLFGAFMMLG 124
Query: 252 MRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N + + +AK I+ N+A L + GID GH+GGL+GG ++++ G
Sbjct: 125 ESFSN-----NQAIVSMAKTFLLFIVLNIATDLFVSGIDIAGHIGGLIGGFLVAYVAG 177
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 90/149 (60%), Gaps = 7/149 (4%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+++ G +N L+ G+++RL T+ FLHA++ HL +N +LN+IG +EK+ G +++ VY
Sbjct: 53 IIVLGGMVNLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVY 112
Query: 215 FSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
S I +S SY N +VGASGAIFGL+GS + + ++ + GK L+ +
Sbjct: 113 ILSLIFASYGSYVVANVKLGIGISVGASGAIFGLLGSLLIIVFLNKKVF--GKTVLRGIT 170
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
+VI+ N+ IG + ID HV G + GA
Sbjct: 171 EVIVVNLLIGFFVPNIDITAHVTGGIAGA 199
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
I+ N+ I L + ID H GG + GA +
Sbjct: 302 ILLNVFISLSMSNIDISAHFGGFIAGAIL 330
>gi|83745575|ref|ZP_00942633.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
gi|83727652|gb|EAP74772.1| transmembrane hypothetical [Ralstonia solanacearum UW551]
Length = 569
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H+GG
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAHIGG 379
Query: 294 LLGGAAISWLL 304
L+GG ++ +L
Sbjct: 380 LVGGCMLAMIL 390
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Query: 154 KLLLW-GAK-INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
++L W GAK N++I G+++RL TS FLH I HL+ N Y+L +G +E+I G ++YL
Sbjct: 184 QILYWMGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYL 243
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+YF S I +S S F VGASGAIFGL+G+ VF ++ + GK + ++ +
Sbjct: 244 AIYFVSGIVASIFSLYFSPVMGVGASGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVI 301
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
I+ N+ IGL + ID GG + GA +
Sbjct: 302 ILLNVFIGLSMSNIDISARFGGFIAGAIL 330
>gi|207738893|ref|YP_002257286.1| membrane protein [Ralstonia solanacearum IPO1609]
gi|206592264|emb|CAQ59170.1| membrane protein [Ralstonia solanacearum IPO1609]
Length = 543
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 180 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFSLGGNAAFEVQHGEWWRLLSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL +Y + + SA+S F A VG
Sbjct: 234 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVG 293
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
ASGA+FG+ G++ V I R+R ++ K L L +++++A GL G+DN H+GG
Sbjct: 294 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLAQGLTKPGVDNAAHIGG 353
Query: 294 LLGGAAISWLL 304
L+GG ++ +L
Sbjct: 354 LVGGCMLAMIL 364
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +GP +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------QHL 268
+ A S S+ F S + GASGAIFG G+ F G K + ++
Sbjct: 277 LFAGFAGSLASFLFSPSVSAGASGAIFGCFGALLYF--------GKAKPHIFFRTIGMNV 328
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
VI N+A GL++ IDN GH+GGL+GG
Sbjct: 329 ITVIGINLAFGLVVPNIDNAGHIGGLIGG 357
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 19/209 (9%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +R ++ LA+ +++ N+A L G+D +GH+GGLLGG + +
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGHIGGLLGGFLAAGM 191
Query: 304 LG-PALKYEFTSDDGFRIFSDRAPIFHLI 331
LG PAL G R+ S IF L+
Sbjct: 192 LGAPALG---RMSTGRRLASTITLIFGLV 217
>gi|335357178|ref|ZP_08549048.1| rhomboid family integral membrane protein [Lactobacillus animalis
KCTC 3501]
Length = 224
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 101/178 (56%), Gaps = 14/178 (7%)
Query: 137 LLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+AVN+LV+I TQ+ L+ WGAK N LI +G+ WRL T F+H + HL +N
Sbjct: 14 LIAVNLLVFIGMTLSGGTQNAVNLIAWGAKYNPLIIQGELWRLFTPMFIHIGLEHLALNL 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L +G +E++ G R+L +Y S + + +S+ N+ + GAS ++FGL G++ +
Sbjct: 74 LTLYFLGVQLEQLFGKWRFLALYLISGVGGNILSFALSNNISAGASTSLFGLFGAYLMLG 133
Query: 252 MRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
R + ++ +++ +I+ N+ L GID WGH+GGLL G S+ +G
Sbjct: 134 ESFRQ-----NQYIRMISRQFLVLIVLNLGFDLFAGGIDIWGHLGGLLAGFLASYAVG 186
>gi|452975048|gb|EME74867.1| rhomboid protease YggP [Bacillus sonorensis L12]
Length = 512
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WR T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLIRFGAKENSLILAGEWWRFVTPIILHIGLIHLMFNTFALLSVGAAAERVFGSFRFLI 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ + S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYITAGVFGSIGSFLFSPYPSAGASGAIFGCLGALLFLAFSNRKAF--LKTIGTNIMVMI 326
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ +G + IDN GH+GGL+GG
Sbjct: 327 ILNLGLGFAVSNIDNAGHIGGLVGG 351
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI++G++WR T FLH + HL++N +L +G +E+I G R++ +Y
Sbjct: 211 LIRFGAKFNPLINEGEWWRFFTPIFLHIGLLHLLMNTLALYYLGTVVERIYGNVRFMLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
++ A S S+ F S + GASGAIFG G+ F + H + + ++ V+
Sbjct: 271 LAAGFAGSLASFVFSPSLSAGASGAIFGCFGALLYFGVIHPRLF--FRTMGMNILVVLGI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+A+G + GIDN GH+GGL+GG
Sbjct: 329 NLALGFTLPGIDNAGHIGGLIGG 351
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 19/209 (9%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +R ++ LA+ +++ N+A L G+D +GH+GGLLGG + +
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGHIGGLLGGFLAAGM 191
Query: 304 LG-PALKYEFTSDDGFRIFSDRAPIFHLI 331
LG PAL G R+ S IF L+
Sbjct: 192 LGAPALG---RMGTGRRLASTITLIFGLV 217
>gi|321311972|ref|YP_004204259.1| membrane endopeptidase [Bacillus subtilis BSn5]
gi|320018246|gb|ADV93232.1| membrane endopeptidase [Bacillus subtilis BSn5]
Length = 507
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G RR+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSRRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|229552508|ref|ZP_04441233.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|258539881|ref|YP_003174380.1| membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|385835529|ref|YP_005873303.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314060|gb|EEN80033.1| S54 family peptidase [Lactobacillus rhamnosus LMS2-1]
gi|257151557|emb|CAR90529.1| Membrane-associated serine protease [Lactobacillus rhamnosus Lc
705]
gi|355395020|gb|AER64450.1| rhomboid family protein [Lactobacillus rhamnosus ATCC 8530]
Length = 229
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 19/209 (9%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +R ++ LA+ +++ N+A L G+D +GH+GGLLGG + +
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGHIGGLLGGFLAAGM 191
Query: 304 LG-PALKYEFTSDDGFRIFSDRAPIFHLI 331
LG PAL G R+ S IF L+
Sbjct: 192 LGAPALG---RMGTGRRLASTITLIFGLV 217
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 7/176 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T I+++VN++VY+ A +T ++L+ +GAK+NSLI G+ WR TS F+H HL+
Sbjct: 136 TYIIISVNLIVYLLMTLAGGSTDQRVLIEFGAKVNSLIQAGEIWRFFTSMFIHIGFMHLI 195
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+ S+GP +E+ G R+ +Y S + S S+ F + + GASGAIFGL+G+
Sbjct: 196 FNLYAFWSLGPFIEERFGHWRFFTIYSLSGLGGSIASFFFSPALSAGASGAIFGLLGALF 255
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++ ++ G +L V++ N+ GL + GIDN+ H+GGLL G S LL
Sbjct: 256 YYSIKRPSLWKSGLG--MNLVLVLLINLGFGLTMPGIDNFAHLGGLLTGIITSILL 309
>gi|125973563|ref|YP_001037473.1| rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|256003382|ref|ZP_05428373.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281417768|ref|ZP_06248788.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|385778515|ref|YP_005687680.1| rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|419723657|ref|ZP_14250772.1| Rhomboid family protein [Clostridium thermocellum AD2]
gi|419724518|ref|ZP_14251580.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|125713788|gb|ABN52280.1| Rhomboid family protein [Clostridium thermocellum ATCC 27405]
gi|255992672|gb|EEU02763.1| Rhomboid family protein [Clostridium thermocellum DSM 2360]
gi|281409170|gb|EFB39428.1| Rhomboid family protein [Clostridium thermocellum JW20]
gi|316940195|gb|ADU74229.1| Rhomboid family protein [Clostridium thermocellum DSM 1313]
gi|380772065|gb|EIC05923.1| Rhomboid family protein [Clostridium thermocellum YS]
gi|380780339|gb|EIC10022.1| Rhomboid family protein [Clostridium thermocellum AD2]
Length = 511
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 11/166 (6%)
Query: 131 RQW-TNILLAVNVLVY--IAQFA------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
+ W T +L+AVN+LV+ I +A + L+ +GAK N+ I G++WR T FLH
Sbjct: 178 KPWVTYVLIAVNILVWLLIEIYARSKGVDSSSLLVDFGAKENTHIMMGEYWRFVTPMFLH 237
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIF 241
I HL+VN YSL +G T+E I G R+L +Y + + S +S+ F +P+VGASGAIF
Sbjct: 238 NGITHLVVNSYSLYVLGTTVEMIMGKGRFLFIYLMAGLMGSIVSFIFSIAPSVGASGAIF 297
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
GL+G+ + HR + G + + ++ N+ GL + IDN
Sbjct: 298 GLLGALIYYGTEHRELFKKGFG--RGILTTLLINIVYGLSVPRIDN 341
>gi|421768840|ref|ZP_16205550.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|421771007|ref|ZP_16207668.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
gi|411185689|gb|EKS52816.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP2]
gi|411186442|gb|EKS53566.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
rhamnosus LRHMDP3]
Length = 229
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 19/209 (9%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + +T + +L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNNAVLVTYGARANLLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF + A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +R ++ LA+ +++ N+A L G+D +GH+GGLLGG + +
Sbjct: 137 LMLGDTYRE-----NPVIRQLARQFLLLVVLNLAFNLFSSGVDIYGHIGGLLGGFLAAGM 191
Query: 304 LG-PALKYEFTSDDGFRIFSDRAPIFHLI 331
LG PAL G R+ S IF L+
Sbjct: 192 LGAPALG---RMGTGRRLASTITLIFGLV 217
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I +G++WRL +S FLH + HL++N +L +G +E+I G R+ +Y
Sbjct: 210 LIEYGAKYNPGIIEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQIYGSFRFTMIY 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + I SA S+ F S A GASGAIFGL G+ F R+ ++ + +L ++
Sbjct: 270 FLAGILGSAASFYFNTSVAAGASGAIFGLFGALLYFAWRYPSLF--FRTMGWNLIILVAI 327
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ G+ + +DN GH+GGL+GG
Sbjct: 328 NIVFGITVPQVDNSGHMGGLIGG 350
>gi|366085766|ref|ZP_09452251.1| membrane-associated serine protease [Lactobacillus zeae KCTC 3804]
Length = 229
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV+I + + + L+ +GA+ N LI GQ+WRL T F+H + H++
Sbjct: 17 TNGILAVTILVFILETLSGGSTNTEVLIAYGARANPLILYGQWWRLITPVFVHIGLTHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 MNGFSLYFLGEMTERLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +R+ ++ L++ +++ N+A L G+D +GH+GG+LGG + +
Sbjct: 137 LMLGDTYRD-----NPVIRQLSRQFLLLVVLNLAFNLFSSGVDIYGHIGGVLGGFLAAGM 191
Query: 304 LG-PAL 308
LG PAL
Sbjct: 192 LGAPAL 197
>gi|300853810|ref|YP_003778794.1| membrane-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433925|gb|ADK13692.1| putative membrane-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 337
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 116/180 (64%), Gaps = 10/180 (5%)
Query: 136 ILLAVNVLVYIAQ-------FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHL 187
I++A+NV VY F + +L++ GAK+NSLI G+++RL T FLHA I HL
Sbjct: 155 IIIALNVAVYTVTAYLSGNIFDSNINVLVFMGAKVNSLIASGEYYRLFTCMFLHAGIVHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN YSL +G +EK+ G +Y+ +Y S + SS S+ F +S +VGASGAIFGL+G+
Sbjct: 215 GVNMYSLYIMGSFVEKVYGKVKYIVMYLISGLVSSVFSFMFSSSISVGASGAIFGLLGAA 274
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
VF ++ ++ + GKE L ++ +I+ N+ IG I +DN+GH+GGL+GG I++ +G
Sbjct: 275 LVFAIKMKHKI--GKEFLMNVISIIVVNLIIGFSIANVDNFGHLGGLVGGVVITYFIGQC 332
>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis]
gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]
Length = 429
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T+IL+++N+ V++ + A+ + LL+GAKIN LI G++WRL T FLH+ +
Sbjct: 178 TSILVSINIAVFLFELASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGV 237
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+SL + GP + + G ++ ++ I+ + S+ P VG +G IF ++
Sbjct: 238 FHMALGCWSLLTFGPQVSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAII 297
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG-IDNWGHVGGLLGGAAISWL 303
G++ VF M++++++ E +II ++ L G ID+W H+G L G +
Sbjct: 298 GAWLVFQMQNKDVIAKDISESMFQKAIIITGLSFILSHFGPIDDWTHLGATLTGIVYGYF 357
Query: 304 LGPALKYE 311
P L+ +
Sbjct: 358 TCPTLQLD 365
>gi|149919219|ref|ZP_01907702.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149819933|gb|EDM79355.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 383
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Query: 136 ILLAVNVLVYIAQFA--------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL +NV V++ + ++L+ WGA GQ+WRL T+ FLH + HL
Sbjct: 55 VLLGLNVAVWLLMVGMGVDAFEPSSEELVDWGANFGPKTASGQWWRLLTATFLHGGLIHL 114
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS 246
N Y L IG E+I YL +YF S + +SA S + +P+VGASGA+ G+ G+
Sbjct: 115 GFNIYFLWVIGRITEQIFRAPAYLVIYFGSGLCASAASLAWNPIAPSVGASGALLGVFGA 174
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F F +R R +L + ++ A V+I N+A+ + IDN HVGGL+ G I +L+
Sbjct: 175 FLGFTLRRREVLPPEFVQSVRRNAMVLIGLNVAVAFFMSNIDNAAHVGGLVAGLGIGYLI 234
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL ++ FLHA + HL +N + L + G +E+I GP YL +Y + + SA+S
Sbjct: 222 VQHGEWWRLLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGLLGSALS 281
Query: 226 YRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLL 281
F A VGASGA+FG+ G++ V I R+R+++ K L L +++++ GL
Sbjct: 282 LSFAAQHAIGVGASGAVFGVAGAWLVAIGRYRSLMPQTLSKRLLTQLGLFVLYSLVQGLT 341
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALKYE 311
G+DN H+GGL GG ++ +L L +
Sbjct: 342 KPGVDNAAHIGGLAGGCMLAMILPARLDMD 371
>gi|311069089|ref|YP_003974012.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|419820266|ref|ZP_14343877.1| membrane endopeptidase [Bacillus atrophaeus C89]
gi|310869606|gb|ADP33081.1| membrane endopeptidase [Bacillus atrophaeus 1942]
gi|388475418|gb|EIM12130.1| membrane endopeptidase [Bacillus atrophaeus C89]
Length = 511
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH +AHL N ++L SIG +EKI G R+L
Sbjct: 210 ETLVAFGAKENSLIAAGEWWRLVTPIVLHIGLAHLAFNTFALWSIGTAVEKIYGSGRFLL 269
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y + + S S+ F P+ GASGAIFG +G+ + +R + K ++ +I
Sbjct: 270 IYLLAGVTGSIASFVFSPYPSAGASGAIFGCLGALLYLAVSNRKLF--LKTIGTNIIVII 327
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFS 322
I N+ G + IDN GH+GGL+GG +L AL TS RI S
Sbjct: 328 IINLGFGFAVSNIDNSGHIGGLIGG----FLAAGALGLPNTSARAKRIVS 373
>gi|239827720|ref|YP_002950344.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239808013|gb|ACS25078.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 389
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 111/202 (54%), Gaps = 8/202 (3%)
Query: 102 FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQ-WTNILLAVNVLVYIAQF----ATQDKLL 156
FF +++ E + R G+ +T I +A+ VLV++ +T +L
Sbjct: 153 FFEAERLKQDILREAREQHERERRLFEYGKPVFTYIFIALQVLVFLLMEWSGGSTNPAVL 212
Query: 157 L-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ +GAK N LI +G++WR T FLH HL++N ++L +G T+E++ G R+ +Y
Sbjct: 213 IQYGAKFNPLIQEGEWWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYL 272
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ F S + GASGAIFGL G+ F +R++ + ++ +II N
Sbjct: 273 IAGFFGTLGSFLFTTSLSAGASGAIFGLFGALLYFGTVYRHLF--FQTIGTNIIGLIIIN 330
Query: 276 MAIGLLIKGIDNWGHVGGLLGG 297
+ G+++ GIDN GH+GGL+GG
Sbjct: 331 LLFGIMVPGIDNAGHIGGLIGG 352
>gi|317128371|ref|YP_004094653.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
gi|315473319|gb|ADU29922.1| Rhomboid protease [Bacillus cellulosilyticus DSM 2522]
Length = 524
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 8/190 (4%)
Query: 118 SHLDTARTNLFIGRQW-TNILLAVNVLVY-IAQF----ATQDKLLLWGAKINSLIDKGQF 171
+ ++ R F G+ T ILLA +++Y I ++ + + L+ +GAK N LI +G++
Sbjct: 173 NQVEKDRKVFFYGKPIVTFILLATILIMYAIVEYNGSSMSTETLISFGAKFNPLILQGEW 232
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
WR ++ FLH HLM+N +L +G +E+I G R+L +Y + + S S+
Sbjct: 233 WRFFSAMFLHIGFFHLMMNSLALFYLGSAVERIYGTGRFLIIYLIAGLVGSIASFALNEQ 292
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ GASGAIFG G+ F ++H+ + + ++ ++ N+A G ++ IDN H+
Sbjct: 293 VSAGASGAIFGCFGALLYFGIKHKRLF--FRTMGMNVIVILSINLAFGFIVPMIDNGAHI 350
Query: 292 GGLLGGAAIS 301
GGL+GG A S
Sbjct: 351 GGLIGGFAAS 360
>gi|15613984|ref|NP_242287.1| hypothetical protein BH1421 [Bacillus halodurans C-125]
gi|10174038|dbj|BAB05140.1| BH1421 [Bacillus halodurans C-125]
Length = 514
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 10/147 (6%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N I G++WRL +S FLH I H M+N +L +G T+E+I G R+ +Y
Sbjct: 215 LIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFMMNSLALFYLGGTVERIYGTSRFFIIY 274
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI----LGGGKEELQHLAK 270
F + +A S S+ + GASGAIFG G+ F H+ + +G +
Sbjct: 275 FIAGLAGSIASFALNAHVSAGASGAIFGCFGALLYFGTVHKKLFFRTMGSS------VLL 328
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+++FN+A G +I IDN H+GGL+GG
Sbjct: 329 ILVFNLAFGFIIPMIDNGAHIGGLIGG 355
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T FLH + HL++N SL +G +E++ G R+L +Y
Sbjct: 211 LIRFGAKFNLLIIEGEWWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ A S S+ F S + GASGAIFG G+ F + H + + ++ V+
Sbjct: 271 LFAGFAGSLTSFVFSPSLSAGASGAIFGCFGALLYFGVIHPGLF--FRTMGMNILVVLGI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+A+G + GIDN GH+GGL+GG
Sbjct: 329 NLALGFTLPGIDNAGHIGGLIGG 351
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 23/182 (12%)
Query: 136 ILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
I + V +L+ +A +T ++L+ +GAK+ +LI +GQ+WRL T FLH + HL+VN ++
Sbjct: 19 IQVIVFILMTVAGGSTNTQILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMHLVVNSVTV 78
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMR 253
IG +E + G R+L +YF SA+ + S+ F NS + GAS AIFGL G+F +
Sbjct: 79 YYIGTQIENMFGHARFLSIYFVSALTGNLASFVFLPNSLSAGASTAIFGLFGAFLML--- 135
Query: 254 HRNILGGGKEELQH----------LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
E H + N+ L + GID +GH+GGL+GG + ++
Sbjct: 136 --------GESFHHNPYIRLLSRQFLTFVAINLVFDLFMPGIDIYGHLGGLVGGFLMGYV 187
Query: 304 LG 305
+G
Sbjct: 188 VG 189
>gi|365157863|ref|ZP_09354108.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
gi|363622533|gb|EHL73692.1| hypothetical protein HMPREF1015_00268 [Bacillus smithii 7_3_47FAA]
Length = 397
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T LFI Q +AV +L+ I +T D L+ +GAK N LI G++WR T FLH
Sbjct: 186 TYLFIAVQ-----VAVFLLLEINGGSTNTDTLIRFGAKFNPLILDGEWWRFFTPIFLHIG 240
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL++N +L +G +EKI G R+L +Y S S S+ F + + GASGAIFG
Sbjct: 241 VLHLLMNTMALYYLGTMVEKIFGRWRFLWIYLFSGFLGSVASFVFTPNLSAGASGAIFGC 300
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ F +R++ + ++ VII N+ G + GIDN GH+GGL+GG
Sbjct: 301 FGALLFFGFVNRSLF--FRTIGMNVIVVIIINLIFGFTVPGIDNSGHIGGLIGG 352
>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]
Length = 468
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 17/230 (7%)
Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LLWGAKINS 164
H+ S +D+ + IL +VN+ V++ + A+ + LL+GAKIN
Sbjct: 230 HDPRSAIDSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINH 289
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 290 LIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFT 349
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL--I 282
S+ + P VG +G +F ++G++ ++ +++++++ E K +I I +L
Sbjct: 350 SFLHTSDPTVGGTGPVFAIIGAWLMYQIQNKHVIASDASE-NLFQKAVIMTALIFILSHF 408
Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALKYEFTS-----DDGFRIFSDRAPI 327
ID W H G G A +L P L+ +S ++G ++ A +
Sbjct: 409 GPIDEWSHFGAAFSGMAYGFLTSPILQLNDSSSGTGQEEGLKLVRKYAAV 458
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LL V V++Y+ LL +GA+ N L+ GQ+WRL T F+H H++
Sbjct: 16 TYLLLFVMVVIYLLMTMNGGSENVFNLLKFGAQSNQLVRDGQWWRLITPIFVHIGFQHIL 75
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E I G RY ++ S I + MS+ N + G+S AIFGL G+F
Sbjct: 76 INGITLYYLGKLIEPIVGHLRYFIIFMVSGICGNLMSFALGNGISAGSSTAIFGLFGAFL 135
Query: 249 VFIMRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++R G + ++ AK ++ N+ + GID +GH+GG +GG +S+++
Sbjct: 136 MIAFQYR-----GNDFVRSTAKTFVLFVVINLVFDIFTPGIDIYGHIGGFIGGYLVSFVV 190
Query: 305 G 305
G
Sbjct: 191 G 191
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 12/187 (6%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVL+++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 199 MIAVNVLIWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 259 ANMVVLYLLGTHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQASVSVGASGAVFGIGGA 318
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
V + HR L + L A ++I +++A G L +DN HVGGL+GGA ++ L
Sbjct: 319 LLVAALLHRRELPQSIRNRLVSDAVIMIGYSLAQGFLSTRVDNAAHVGGLIGGALLALCL 378
Query: 305 GPALKYE 311
L E
Sbjct: 379 PVRLSPE 385
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
Q L+ +GAK+N LI G+ WRL TS F+H I HL N Y+L ++GP E+ G ++L
Sbjct: 168 QRVLIAFGAKVNDLIQAGEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTEEFFGHPKFL 227
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S SY F + + GASGAIFGL+G+ + ++ + G +L V
Sbjct: 228 MIYMFSGLGGSIASYLFSPALSAGASGAIFGLLGALLYYCIKRPYLWKSGLG--MNLVVV 285
Query: 272 IIFNMAIGLLIKGIDNWGH 290
I+ N G+ GIDN+ H
Sbjct: 286 ILVNFGFGISQPGIDNYAH 304
>gi|386759084|ref|YP_006232300.1| membrane endopeptidase [Bacillus sp. JS]
gi|384932366|gb|AFI29044.1| membrane endopeptidase [Bacillus sp. JS]
Length = 503
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVYIA-----QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI +G++WRL T LH IAHL
Sbjct: 175 FTYLFIALQVLMFFVLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 234
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 235 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 294
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ +R + + ++ +II N+ G + IDN GH+GGL+GG
Sbjct: 295 LYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGG 342
>gi|1303863|dbj|BAA12519.1| YqgP [Bacillus subtilis]
Length = 507
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T LFI Q +L ++L + L+ +GAK NSLI +G++WRL T LH I
Sbjct: 180 TYLFIALQ----ILMFSLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGI 235
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
AHL N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +
Sbjct: 236 AHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCL 295
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ + +R + + ++ +II N+ G + IDN GH+GGL+GG
Sbjct: 296 GALLYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|402776749|ref|YP_006630693.1| membrane endopeptidase [Bacillus subtilis QB928]
gi|402481929|gb|AFQ58438.1| Membrane endopeptidase [Bacillus subtilis QB928]
Length = 505
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 202 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 261
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 262 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 319
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 320 IINLGFGFAVSNIDNSGHIGGLIGG 344
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYI-AQFATQDK-------LLLWGAKINSLIDKGQFWRLA 175
+ NLF Q T+I++ +N+++++ + + D L+ GAK+NS I G+F+RL
Sbjct: 130 KNNLFSSNQITSIIIFLNIVIFLYSSYINGDIFDINTLILVQLGAKVNSYIINGEFYRLL 189
Query: 176 TSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVG 235
T FLH+ + H+ N Y+LN+IG +E++ G ++++ +Y + ++ S S+ F +VG
Sbjct: 190 TCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIFAGLSGSLASFLFSPYVSVG 249
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
ASGAIFGL G+ + ++ + + L LA VI+ N+ G GIDN+
Sbjct: 250 ASGAIFGLFGAALIMGLKLKKYINS--NFLGSLASVIVVNVIFGFSSTGIDNY 300
>gi|430759046|ref|YP_007208970.1| hypothetical protein A7A1_3554 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023566|gb|AGA24172.1| Hypothetical protein YqgP [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|221310411|ref|ZP_03592258.1| hypothetical protein Bsubs1_13621 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314734|ref|ZP_03596539.1| hypothetical protein BsubsN3_13537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319657|ref|ZP_03600951.1| hypothetical protein BsubsJ_13458 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323934|ref|ZP_03605228.1| hypothetical protein BsubsS_13592 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767560|ref|NP_390367.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|418032339|ref|ZP_12670822.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915762|ref|ZP_21964388.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
gi|251757277|sp|P54493.2|GLUP_BACSU RecName: Full=Rhomboid protease GluP; AltName: Full=Intramembrane
serine protease
gi|225185188|emb|CAB14418.2| membrane endopeptidase [Bacillus subtilis subsp. subtilis str. 168]
gi|351471202|gb|EHA31323.1| hypothetical protein BSSC8_17660 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959733|dbj|BAM52973.1| membrane endopeptidase [Bacillus subtilis BEST7613]
gi|407965308|dbj|BAM58547.1| membrane endopeptidase [Bacillus subtilis BEST7003]
gi|452116110|gb|EME06506.1| rhomboid protease gluP [Bacillus subtilis MB73/2]
Length = 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|449094984|ref|YP_007427475.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
gi|449028899|gb|AGE64138.1| hypothetical protein C663_2371 [Bacillus subtilis XF-1]
Length = 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|428279976|ref|YP_005561711.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
gi|291484933|dbj|BAI86008.1| hypothetical protein BSNT_03714 [Bacillus subtilis subsp. natto
BEST195]
Length = 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|384176109|ref|YP_005557494.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595333|gb|AEP91520.1| YqgP [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI +G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|94968908|ref|YP_590956.1| rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94550958|gb|ABF40882.1| Rhomboid-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 365
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 18/191 (9%)
Query: 134 TNILLAVNVLVYIA------QFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NV V++A QF D L WGA G++WR+ TS FLH I
Sbjct: 61 TRILIGINVAVFLAMVLLTRQFVEFDTPTALRWGADYGPATASGEWWRMLTSMFLHGGIL 120
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
H++VN ++L ++G T E G + +L +Y S SA + + +S +VGASGAIFG+
Sbjct: 121 HILVNMFALRNLGYTAELFYGRKNFLIIYMLSGFGGSAATLLWRPDSVSVGASGAIFGVA 180
Query: 245 GSFAVFIM-----RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ A + R +L K ++ + VI +N+ IG + I+N HVGGL+ GA
Sbjct: 181 GALAAMVYFKKLPVDRALL---KRDIGSIGAVIFYNLLIGAALPIINNAAHVGGLVAGAI 237
Query: 300 ISWLLGPALKY 310
+ + L PA+ +
Sbjct: 238 LGFTL-PAMIF 247
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 12/187 (6%)
Query: 137 LLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
++AVNVLV++ A L+ WG + +L GQ+WRL T+ FLH ++ HL
Sbjct: 178 VIAVNVLVWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLA 237
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGS 246
N L +G +E+ G R +L +Y + + SA+S F S +VGASGA+FG+ G+
Sbjct: 238 ANMVVLYLLGKHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQTSVSVGASGAVFGIGGA 297
Query: 247 FAVFIMRHRNILGGG-KEELQHLAKVII-FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
V + HR L + L A ++I +++A G L +DN HVGGL+GG ++ L
Sbjct: 298 LLVAALLHRRELPQNIRNRLVSDAVIMIGYSLAQGFLSTRVDNAAHVGGLIGGVLLALCL 357
Query: 305 GPALKYE 311
L E
Sbjct: 358 PVRLSPE 364
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 16/213 (7%)
Query: 112 SGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKI 162
S + H++T+ L IG IL +VN+ V++ + A+ + LL+GAKI
Sbjct: 234 SAIDSQQHVETSSLYL-IG-----ILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKI 287
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A +
Sbjct: 288 NHLIMVGEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACN 347
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLL 281
+S+ P VG +G +F ++G++ ++ +++++++ E L H A ++ + I
Sbjct: 348 FISFLHTPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSH 407
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALKYEFTS 314
ID W H G G A +L P L+ +S
Sbjct: 408 FGPIDEWSHFGAAFSGMAYGFLTSPILQLNDSS 440
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI--------------DKGQFWRLATS 177
++T L+A+NVL ++ LLL G + + I G++WRL ++
Sbjct: 206 RFTYALIALNVLAWLV------TLLLGGNPLQTPISVLFNLGGNAAFEVQHGEWWRLLSA 259
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VG 235
FLHA + HL +N L + G +E+I GP YL Y + + SA+S F A VG
Sbjct: 260 TFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSFAAQHAIGVG 319
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
ASGA+FG+ G++ V I R+R ++ K L L +++++ GL G+DN H+GG
Sbjct: 320 ASGAVFGVAGAWLVAIGRYRGLMPQTLSKRLLTQLGLFVLYSLVQGLTKPGVDNAAHIGG 379
Query: 294 LLGGAAISWLLGPALKYE 311
L+G ++ +L L +
Sbjct: 380 LVGSCVLAMILPARLDMD 397
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 133 WTNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T ILL + + V + L+ +GAK N LI +GQ+WR T F+H HL
Sbjct: 184 FTYILLVIQIAVLLVMELNGGSTNSTTLIKFGAKFNPLIIEGQWWRFLTPIFIHIGFLHL 243
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L IGP +E+I G R++ +Y + S+ F + + GASGAIFG G+
Sbjct: 244 IMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLASFAFSANLSAGASGAIFGCFGAL 303
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F + + + + ++ VI N+A G ++GIDN GH+GGL+GG S +L
Sbjct: 304 LYFGLIYPKLF--FRTMGMNILVVIGLNLAFGFSMQGIDNAGHIGGLIGGFLASGIL 358
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHL 187
T LL VN+ +++ + + L+ +GAK N ++I+ G++WR+ S FLH I HL
Sbjct: 186 TYFLLTVNIFMFLLLELNGNSTSTETLIEFGAKYNPAIIEDGEWWRIVASMFLHIGILHL 245
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++ +G +E+I G R+L +YF + I S+ F + + GASGA+FGL G+
Sbjct: 246 LMNMLAVYYLGTVVERIYGSLRFLIIYFLAGIGGGLASFAFTTNVSAGASGALFGLFGAL 305
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F HR I + +L +I N+ GL + +DN H+GGL+ G S +L
Sbjct: 306 LFFGCIHRRIF--FQTMGMNLLFIIGINIVFGLSVPQVDNGAHMGGLITGFIASAIL 360
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 15/180 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NV ++I D L+ GAK + LI G++WR+ TS F+H HL+
Sbjct: 192 TYALLVMNVFIFILIELYGDSESILTLVEVGAKYSPLILDGEWWRIITSMFIHIGFLHLL 251
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E+I G R++ +YF++ + + +S+ S GASGAIFGL G+
Sbjct: 252 MNSLALYFLGTLVERIYGSFRFVFIYFTAGVIGTLVSFWMNLSIGAGASGAIFGLFGALL 311
Query: 249 VFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F + +R + +G ++ V+ N+A G LI +DN HVGGL+GG ++++
Sbjct: 312 YFGLNYRKLFFRTMGA------NVLIVLAINLAFGFLIPVVDNSAHVGGLIGGFLAAYVI 365
>gi|383113335|ref|ZP_09934107.1| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
gi|382948721|gb|EFS32339.2| hypothetical protein BSGG_3039 [Bacteroides sp. D2]
Length = 592
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 273 TGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 331
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 332 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 358
>gi|160886529|ref|ZP_02067532.1| hypothetical protein BACOVA_04540 [Bacteroides ovatus ATCC 8483]
gi|423289697|ref|ZP_17268547.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
gi|156108414|gb|EDO10159.1| peptidase, S54 family [Bacteroides ovatus ATCC 8483]
gi|392667408|gb|EIY60918.1| hypothetical protein HMPREF1069_03590 [Bacteroides ovatus
CL02T12C04]
Length = 592
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 23/213 (10%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH-LAKVIIF---NMAIGLLIKGIDNWG 289
GASG+IFGL G F F++ HR KE+ + LA ++IF N+ G+ GIDN
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRI----AKEQRKALLASILIFVGYNLVYGMK-AGIDNAA 327
Query: 290 HVGGLLGGAAISWLLGPALKYEFTSDDGFRIFS 322
H+GGLL G + + + Y+F D R S
Sbjct: 328 HIGGLLSGFVLGIIY--VVGYKFEKPDAQRTVS 358
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 21/179 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T L+AVNVL+++ Q A+ D+L LW I + D Q++RL TSAFLH + HL+
Sbjct: 30 TYSLIAVNVLMFVLQMASGDRLTEELTLWAPGI-AFYD--QYYRLVTSAFLHYGVMHLLF 86
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSF 247
N ++L +GP +E+ G RY +Y SA+ S + Y N+P GASGAIFGL G+
Sbjct: 87 NMWALYVVGPPLEQWLGRLRYGALYALSALGGSVLVYLLTPINTPTAGASGAIFGLFGAI 146
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL----LIKGIDNW-GHVGGLLGGAAIS 301
V + R N+ +++ +A V+I N+ L G +W GH+GGL+ GA I+
Sbjct: 147 FV-VARKLNL------DVRMIAAVVIINLVFTFAGPALGTGAISWQGHIGGLITGAGIA 198
>gi|296333354|ref|ZP_06875807.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675141|ref|YP_003866813.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149552|gb|EFG90448.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413385|gb|ADM38504.1| membrane endopeptidase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 506
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH IAHL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYIALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 25 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 84
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI--MRHRNILGGGKEELQHLAK 270
+Y S I + S+ F +VGAS A+FGL G+F + + R + + Q A
Sbjct: 85 IYLLSGIVGNIASFVFNTGISVGASTALFGLFGAFFMLVEAFRQNTAI---RAMGQQFAL 141
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
I+ N+A L GID GHVGGLLGG ++ ++G
Sbjct: 142 FIVLNLAFDLFNPGIDLAGHVGGLLGGFLVANIVG 176
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 7/156 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI +GQ+WRL FLH+ + H+ VN +L IG +E + G R+
Sbjct: 39 NVLVFFGAKVNILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRFTL 98
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLA 269
+Y S I + S+ F +VGAS A+FGL G+F + + R I G Q A
Sbjct: 99 IYLLSGIVGNIASFVFNMGISVGASTALFGLFGAFFMLVEAFRQNTAIRAMG----QQFA 154
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
I+ N+A L GID GHVGGLLGG ++ ++G
Sbjct: 155 LFIVLNLAFDLFNPGIDLAGHVGGLLGGFLVANIVG 190
>gi|293373190|ref|ZP_06619552.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
gi|292631838|gb|EFF50454.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CMC
3f]
Length = 584
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 265 TGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 323
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 324 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 350
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 11/148 (7%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK+N LI++G++WRL T FLH H +N ++L S+GP +E++ G R+L
Sbjct: 169 NTLVAFGAKVNPLIEQGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLI 228
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK-- 270
+Y S I +++ S+ F S + GASGA+FGLVG+ F +R R++ ++ L
Sbjct: 229 IYLLSGILATSASFAFSESISAGASGALFGLVGALLYFGLRDRSLF------MKTLGPPL 282
Query: 271 VIIFNMAIGL---LIKGIDNWGHVGGLL 295
I+ + +GL L G+D++ H GGL+
Sbjct: 283 FIMLGLNVGLAFVLGAGLDHFAHAGGLI 310
>gi|237723366|ref|ZP_04553847.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229447888|gb|EEO53679.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 584
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 265 TGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 323
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 324 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 350
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 134 TNILLAVNVLVYIA-QF----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+A+N ++Y+ +F + + L+ +GAK N LI G++WR+ TS FLH + H +
Sbjct: 187 TYLLIAINAILYLLLEFNGGSESNETLIEYGAKFNPLILDGEWWRVVTSMFLHIGLFHFI 246
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N L G EKI G R+ +Y + IA S S+ F + + GASGA++GL G+F
Sbjct: 247 SNMLFLYYFGSLAEKIYGSLRFFFIYMLAGIAGSVASFAFVTNLSAGASGALYGLFGAFI 306
Query: 249 VFIMRHRNIL--GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F + H+ I GK+ L L N+ +G ++ +D H+GGL+ G
Sbjct: 307 YFGLFHKKIFFRTIGKDILMLLG----INIVLGFVLPQLDVTAHMGGLVAG 353
>gi|299149420|ref|ZP_07042477.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
gi|298512607|gb|EFI36499.1| putative peptidase, S54 (rhomboid) family [Bacteroides sp. 3_1_23]
Length = 592
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 331
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 332 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 358
>gi|423298194|ref|ZP_17276253.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
gi|392663610|gb|EIY57158.1| hypothetical protein HMPREF1070_04918 [Bacteroides ovatus
CL03T12C18]
Length = 592
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 331
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 332 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 358
>gi|336417117|ref|ZP_08597446.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
gi|335936742|gb|EGM98660.1| hypothetical protein HMPREF1017_04554 [Bacteroides ovatus
3_8_47FAA]
Length = 592
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 153 SFFIPRKGFIATPILIDINILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRT 212
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E++ G RR Y + + S+A S Y + +
Sbjct: 213 VTCNFIHIGAFHLLMNMYAFMYVGLLLEELIGGRRMFVSYLLTGLCSAAFSLYMHGETIS 272
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
GASG+IFGL G F F++ HR K L + + +N+ G+ GIDN H+GG
Sbjct: 273 AGASGSIFGLYGIFLAFLLFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHIGG 331
Query: 294 LLGGAAISWLLGPALKYEFTSDDGFRIFS 322
LL G + + + Y+F D R S
Sbjct: 332 LLSGFVLGIIY--VVGYKFEKPDAQRTVS 358
>gi|443631783|ref|ZP_21115963.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347898|gb|ELS61955.1| hypothetical protein BSI_10340 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 507
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ L+ +GAK NSLI G++WRL T LH IAHL
Sbjct: 179 FTYVFIALQVLMFFLLELNGGSTNTQTLVAFGAKENSLIAAGEWWRLLTPIVLHIGIAHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ +R + + ++ +II N+ G + IDN GH+GGL+GG
Sbjct: 299 LYVALSNRKMF--LRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA----TQDK---LLLWGAKINSLI-DKGQF 171
+ T +T+ I T ILL V ++V++ + T D L+ GAK I D Q+
Sbjct: 4 MKTLKTHYLIAPV-TTILLTVTIVVFVIELVVSGGTTDNSYFLVQVGAKWGPYIKDDSQY 62
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-N 230
WRL T FLHA H++ N +L IGP E G R++LG+YF S I+ + SY F N
Sbjct: 63 WRLITPIFLHAGFMHIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPN 122
Query: 231 SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----IKGID 286
+ +VGAS A+FGL G +F + R+ ++ L ++ + + LL ID
Sbjct: 123 TISVGASTALFGLFGGLMIFAYQFRH-----DPNVRALGSMMGLFILLTLLSSFSATNID 177
Query: 287 NWGHVGGLLGGAAISWLLG 305
WGH GG +GG + + G
Sbjct: 178 LWGHFGGFIGGVMFAMIFG 196
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 18/185 (9%)
Query: 134 TNILLAVNVLVYIAQFA----TQDK---LLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T ILL V V+V++ + T D L+ GAK I Q+WRL T FLHA
Sbjct: 14 TTILLTVTVVVFLIELVVSGGTTDNSYFLVQVGAKWGPYIKGDSQYWRLITPIFLHAGFM 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H+ N +L IGP E G R++LG+YF S I+ + SY F N+ +VGAS A+FGL
Sbjct: 74 HIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSPNTISVGASTALFGLF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----IKGIDNWGHVGGLLGGAAI 300
GS +F ++R+ ++ L ++ + + LL ID WGH+GG +GG
Sbjct: 134 GSLMIFAYQYRH-----DPNVRALGSMMGLFVLLTLLSSFSATNIDLWGHLGGFIGGVMF 188
Query: 301 SWLLG 305
+ + G
Sbjct: 189 AMIFG 193
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +++A N+LV++A L WGA G++WRL T+ FLH I
Sbjct: 18 TKLIIAANILVFVAMLVKGAGFWHSPNAIQLAWGANFGPATQDGEWWRLGTAMFLHFGII 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL+VN +SL G +E++ G R+ G+Y S + + +S + AV GASGAIFG+
Sbjct: 78 HLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGNLVSLVIQGNAAVSGGASGAIFGV 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL---AKVI-IFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ F+ R R + + E + L A V + + G ++ GIDN H+GG L G
Sbjct: 138 YGALLTFLWRERQSI--ARHEFRWLFWGASVFSVATIVFGFIVPGIDNSAHIGGFLTGIF 195
Query: 300 ISWLLGPALKYEFTSDD 316
S LL +++ + S +
Sbjct: 196 SSILLSQSIEVKPVSRN 212
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L++ N+L+++A A+ L L WGA G++WRL T+ FLH +
Sbjct: 18 TKLLVSTNLLIFVAMLASGAGLWHSSNGVQLAWGANFGPATQDGEWWRLGTAMFLHFGLV 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N ++L G +E++ G R+ +YF+S +A + +S A+ GASGAIFGL
Sbjct: 78 HLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGNLLSLVAHKGLAISGGASGAIFGL 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL----AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ VF+ R R L E + I ++ +GL I GIDN H+GG + G
Sbjct: 138 YGALLVFLWRERGRL--HPHEFRWFFWGATAFAIVSLGLGLAITGIDNAAHIGGFVTG 193
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+N+ ++ Q D L+ GAK N LI +G++WRL TS FLH H+
Sbjct: 187 FTYILIALNLFFFLQQINNGGSENIDTLIQMGAKYNPLIMEGEWWRLLTSMFLHIGFVHI 246
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R+L +YF IA S S+ S + GASGAIFGL G+
Sbjct: 247 LMNMVALFYLGTAVERIFGRTRFLVIYFLGGIAGSIASFATSISISAGASGAIFGLFGAL 306
Query: 248 AVFIMRHRNILGGGKEEL-QHLAKVIIFNMAIGLLIKGIDNWGH 290
F + ++++ K+ + ++ +++ N+ IG I ID H
Sbjct: 307 LFFGLIYKDVF---KDTMGMNIVFILVVNLVIGFSIPEIDMGAH 347
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ GAK + LI G+ WRL + AFLH + H+ N Y L IGP +E+I G +Y+ +Y
Sbjct: 196 LIFLGAKYSPLIYDGEIWRLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIY 255
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVF-IMRHRNILGGGKEELQHLAKVI 272
S I SS +S +S +VGASG IFGL+G+ F ++ +NI +E L K I
Sbjct: 256 LISCITSSTLSLIINPDSISVGASGGIFGLMGALLAFALIERKNI---DREYTVGLIKTI 312
Query: 273 IFNMAIGLLIKGIDNWGH 290
N+ IGL+I IDN H
Sbjct: 313 GINLVIGLIIINIDNAAH 330
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSLI G++WRL T LH I HL N +L S+G +E++ G R+L
Sbjct: 204 ETLVAFGAKENSLIAAGEWWRLLTPIVLHIGITHLAFNTLALWSVGTVVERMYGSGRFLL 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y ++ I S S+ F P+ GASGAIFG +G+ + +R + + ++ +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ G + IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346
>gi|297584599|ref|YP_003700379.1| rhomboid protease [Bacillus selenitireducens MLS10]
gi|297143056|gb|ADH99813.1| Rhomboid protease [Bacillus selenitireducens MLS10]
Length = 526
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK + I G++WR ++ F+H HL +N +L +G +E+I G R+ G+Y
Sbjct: 219 LVEFGAKYDPAILDGEWWRFVSAMFIHIGPLHLFMNSLALFFLGAAVERIFGTGRFFGIY 278
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F + + S S+ F ++ + GASGAIFGL G+ F +RH+ + + ++ ++
Sbjct: 279 FLAGLFGSVASFVFNDNISAGASGAIFGLFGALLYFGVRHKKLF--FRTMGMNILVILGI 336
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLLG-PALK 309
N+ G ++ +DN H+GGL+GG S ++G PA K
Sbjct: 337 NLVFGFVVPMVDNGAHIGGLIGGFIASSIVGLPAHK 372
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 16/181 (8%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLL--WGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F T + LL +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSLLVAFGAKWGPYIKAYDQYWRLVTPIFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ ++ ++ I + + + ++ N+ G GID WGH+GGL+GG + +
Sbjct: 138 ILYAIQFKHDPRI----RAQGTMMGLFVVLNLMSGFFSTGIDMWGHIGGLIGGMMFAVMF 193
Query: 305 G 305
G
Sbjct: 194 G 194
>gi|398304447|ref|ZP_10508033.1| hypothetical protein BvalD_02972 [Bacillus vallismortis DV1-F-3]
Length = 507
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + +A+ VL++ + L+ +GAK NSLI G++WRL T LH I HL
Sbjct: 179 FTYLFIALQVLMFFLLEIKGGSTNTETLVAFGAKENSLIAAGEWWRLLTPIVLHIGIVHL 238
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
N +L S+G +E++ G R+L +Y ++ I S S+ F P+ GASGAIFG +G+
Sbjct: 239 AFNTLALWSVGTEVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ +R + + ++ +II N+ G + IDN GH+GGL+GG
Sbjct: 299 LYVALSNRKMF--FRTIGTNIIVIIIINLGFGFAVSHIDNSGHIGGLIGG 346
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 137 LLAVNVLVYIAQFATQ-------DKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLM 188
+ + VLV+ A+F L+ +GAK I Q+WRL T FLHA + H++
Sbjct: 18 IFVLTVLVFFAEFLIGRGQTDNGSILVAFGAKWGPYIKVYDQYWRLVTPLFLHAGVMHIL 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
N +L IGP E+ G R++LG+Y I + MSY F + +VGAS A+FG+ G
Sbjct: 78 TNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFAPLTVSVGASSALFGMFGGL 137
Query: 248 AVFIM--RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
++ + +H + + + + + ++ N+ G GID WGH+GGL+GG + + G
Sbjct: 138 ILYAVQFKHDSRI---RAQGTMMGLFVVLNLMSGFFSTGIDMWGHIGGLIGGMMFAVMFG 194
>gi|302758242|ref|XP_002962544.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
gi|300169405|gb|EFJ36007.1| hypothetical protein SELMODRAFT_438240 [Selaginella moellendorffii]
Length = 1043
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 20/191 (10%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQH------LAKVIIFNMAIGLLIKGI--DNWGHVGGLL 295
V ++AV+I+++R G +E+Q + K+++ + L + DNW HVG
Sbjct: 759 VAAWAVYIIQNRQSFG---KEMQAGITSDVIQKILVMSALHLALTDALPADNWTHVGAAA 815
Query: 296 GGAAISWLLGP 306
G L P
Sbjct: 816 VGTLFGLLATP 826
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ RN ++ +A+ +++ N+ GID WGH+GGLL G +++
Sbjct: 131 MLGESFRN-----NAYIKMMARQFLLLVVLNIFFDFFSSGIDIWGHIGGLLSGFLFGYVI 185
Query: 305 G 305
G
Sbjct: 186 G 186
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ N LI GQ+WRL T FLH + HL++NC +L +G +EK G RYL ++
Sbjct: 41 LLRYGAQSNPLIQAGQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEKTVGHFRYLVLF 100
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR-NILGGGKEELQHLAKVII 273
S I + S+ N + G+S AIFGL+G F + + R N+L E A +
Sbjct: 101 LGSGIGGNLFSFAAGNVISAGSSTAIFGLLGVFLMLSLVVRGNLL--ITETGITFAVFVG 158
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG-PAL 308
N+ + ID WGH+GGLL G +++++G P+L
Sbjct: 159 LNLLTDFFVPQIDIWGHLGGLLTGFCLAFVVGVPSL 194
>gi|227510498|ref|ZP_03940547.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190150|gb|EEI70217.1| S54 family peptidase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 234
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 17/191 (8%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ +S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLASGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
+IFGL G+F + R++ I+ + L I+ N+A + + GID GH+GGL
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIAGHLGGL 189
Query: 295 LGGAAISWLLG 305
+GG I+++ G
Sbjct: 190 VGGFLIAYVSG 200
>gi|302758654|ref|XP_002962750.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
gi|300169611|gb|EFJ36213.1| hypothetical protein SELMODRAFT_438082 [Selaginella moellendorffii]
Length = 1043
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 20/191 (10%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+TN+++ VN V++ A+ + L GAKINSLI GQ+WRL T FLH
Sbjct: 639 FTNVIIGVNAAVFLFGLASPVQTPEMVEVPLPFLVGAKINSLIADGQWWRLVTPMFLHDG 698
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ H+ + ++L S GP +E + GP + +Y I + SY +P VG +G ++ L
Sbjct: 699 LIHIGLGAWALLSFGPGVESVYGPAGFCMIYLLGGIFGNITSYFLTPAPTVGGTGPLYAL 758
Query: 244 VGSFAVFIMRHRNILGGGKEELQH------LAKVIIFNMAIGLLIKGI--DNWGHVGGLL 295
V ++AV+I+++R G +E+Q + K+++ + L + DNW HVG
Sbjct: 759 VAAWAVYIVQNRQSFG---KEMQAGITSDVIQKILVMSALHLALTDALPADNWTHVGAAA 815
Query: 296 GGAAISWLLGP 306
G L P
Sbjct: 816 VGTLFGLLATP 826
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
++A+N++V++ ++LL G +N LI G++WR+ TS FLHA H++ N +SL
Sbjct: 21 IIAINLIVFVLTLIPGFGEELLYAGMSVNGLIAAGEWWRIITSMFLHAGFMHVLFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R+L +YF + I A +Y ++ +VGASGA++G+ G+F +
Sbjct: 81 FLFGPELEKIAGKMRFLTIYFLAGIFGVAATYATQDAYYASVGASGALYGIFGAFGALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
R++ + Q + +I+ ++ + L I+ H+GGL+ G
Sbjct: 141 YTRHLF---PQLRQIILPLIVISIIMTFLTPNINIAAHLGGLVTG 182
>gi|440784052|ref|ZP_20961473.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
gi|440219088|gb|ELP58303.1| hypothetical protein F502_15090 [Clostridium pasteurianum DSM 525]
Length = 325
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 10/181 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLIDKGQFWRLATSAFLHANIA 185
T I++ +N+ VY+ L + GAK N LI+ G+++RL T FLH+ I
Sbjct: 141 TYIIIGINIAVYLLSGVLSRNLFNIDINVLDILGAKDNYLINNGEYYRLFTCMFLHSGIL 200
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ N Y+L SIG E I G ++Y+ +Y S I +S SY F N +VGASGAIFG++G
Sbjct: 201 HIASNMYALYSIGGLAESIYGRKKYIIIYILSGIIASTASYVFSNGISVGASGAIFGVLG 260
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
V + ++ +G G +++ +II N+ I I ID H GGL+ G ISWLL
Sbjct: 261 GVLVISHKLKHRIGSGL--FKNIIFIIILNLFISFTIPNIDISAHAGGLVAGIIISWLLF 318
Query: 306 P 306
P
Sbjct: 319 P 319
>gi|381182764|ref|ZP_09891551.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
gi|380317332|gb|EIA20664.1| rhomboid family membrane protein [Listeriaceae bacterium TTU
M1-001]
Length = 516
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR + FLH + H+ NC + +GP EKI G RY+ +
Sbjct: 210 LVEYGAKFNPLIYQGEWWRFISPIFLHTGLMHIAANCLMIYIVGPWAEKIYGRWRYIVIL 269
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
IA + S+ + AVG+S A+F L G+ ++ ++ K +A +++
Sbjct: 270 LVGGIAGNIASFALNTNVAVGSSTAVFALFGALLYLVVLKPHLY--AKTIGSSIAALVVI 327
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
N+ I + GID GHVGGL+GG I+ L L+Y
Sbjct: 328 NLIIDIFAVGIDLAGHVGGLVGGFFIAGALSLPLQY 363
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 20/184 (10%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ + VLV++A + + L+ +GAK+N LI +GQ+WRL T FLH H+
Sbjct: 18 TTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQGQWWRLITPMFLHIGFTHIF 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E G R+L ++ + I + S+ F NS + GAS AIFGL G+F
Sbjct: 78 LNMVTLYFVGTQLEAAFGHARFLIIFLVAGIGGNVASFCFLNSLSAGASTAIFGLFGAFM 137
Query: 249 VFIMRHRNILGGG---KEELQHLAKV----IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+LG ++ LA+ ++ N+A L GID GH+GGL+ G ++
Sbjct: 138 --------MLGESFWQNPIIRQLARTFLAFVVMNIAFDLFTPGIDLAGHLGGLIAGFLVA 189
Query: 302 WLLG 305
+ +G
Sbjct: 190 YTVG 193
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+ +Y+ LLW G + N LI G++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLTLYVLSLIPSIGTLLWNYGIQANFLIQSGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
R + ++ + +I+ ++ + L ++ + H+GGL+ G
Sbjct: 141 YTRRTMPMLRKL---ILPIIVISVIMTFLQPNVNVFAHLGGLVTG 182
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 19/184 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---------------QDKLLLW-GAK-INSLIDKGQFWRLAT 176
T IL+ +N+L ++ ++L W GAK N++I G+++RL T
Sbjct: 149 TGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAKHNNAIIFHGEYYRLVT 208
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
S FLH I HL+ N Y+L +G +E+I G ++YL +YF S I +S S F VGA
Sbjct: 209 SMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFSLYFSPVMGVGA 268
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
SGAIFGL+G+ VF ++ + GK + ++ +I+ N+ IGL + ID H GG +
Sbjct: 269 SGAIFGLLGAALVFAYNEKDRI--GKALVTNIIVIILLNIFIGLSMSNIDISAHFGGFIA 326
Query: 297 GAAI 300
GA +
Sbjct: 327 GAIL 330
>gi|227513507|ref|ZP_03943556.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
gi|227083380|gb|EEI18692.1| S54 family peptidase [Lactobacillus buchneri ATCC 11577]
Length = 234
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
+IFGL G+F + R++ I+ + L I+ N+A + + GID GH+GGL
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIAGHLGGL 189
Query: 295 LGGAAISWLLG 305
+GG I+++ G
Sbjct: 190 VGGFLIAYVSG 200
>gi|403237491|ref|ZP_10916077.1| rhomboid protein membrane-associated serine peptidase [Bacillus sp.
10403023]
Length = 515
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVY-IAQF----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T IL+A+ ++++ + + + LL +GAK N I G++WR T LH HL
Sbjct: 183 FTYILIAIQLIMFAVLELYGGSTNTETLLKYGAKENFRILNGEWWRFFTPMILHIGFIHL 242
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N ++L +G +E++ G R+L +Y + S S+ F + + GASGAIFG G+
Sbjct: 243 LMNTFALYYLGTEVERLYGKSRFLMIYVFAGFLGSLASFVFNANISAGASGAIFGCFGAL 302
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F + ++ + ++ +II N+ +G +I GIDN GH+GGL+GG
Sbjct: 303 LFFGTAYPSLF--FRTMGPNVIGIIIINLVLGFMIPGIDNSGHIGGLVGG 350
>gi|366089319|ref|ZP_09455792.1| membrane-associated serine protease [Lactobacillus acidipiscis KCTC
13900]
Length = 217
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 16/181 (8%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N++VY+ + L+ +GAK+N LI +G++WRL T F+H + H++
Sbjct: 10 TYFLIIINIIVYLLMTVAGGSENTNVLVFFGAKVNQLIGQGEWWRLFTPMFIHIGLQHIV 69
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG +E + G R++ +Y S + + S+ F S + GAS +IFGL G+F
Sbjct: 70 LNMVTLYFIGIQIEAVFGKWRFVILYLISGLGGNIASFVFSPSISAGASTSIFGLFGAFL 129
Query: 249 VFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ +R ++ AK ++I N+ +G GID GH+GGLL G +++L
Sbjct: 130 MLGESYRQ-----NPYIRATAKQFLILVILNLGLGF--TGIDIAGHIGGLLAGFLTAYVL 182
Query: 305 G 305
G
Sbjct: 183 G 183
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 14/170 (8%)
Query: 134 TNILLAVNVLVYIAQFATQ---DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+Y+ Q A+ + +LW + + G+++RL TSAFLH + HL+ N
Sbjct: 77 TYTLIAVNVLMYVLQRASTGFTEAFVLWAPAVAA----GEYYRLVTSAFLHFGLMHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
++L IG +E G R+ +Y SA+ S + Y +P GASGA+FGL A +
Sbjct: 133 MFALYVIGGPLEAALGRLRFGLLYALSALGGSVLVYLLAMNPTAGASGAVFGLFA--ATY 190
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
++ R L +++ + +I+ N+ I ++ GI GH+GGLL GA +
Sbjct: 191 VVAKRLNL-----DVRFVTGLIVVNLVITFVVPGISWQGHLGGLLTGALV 235
>gi|375090618|ref|ZP_09736932.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
gi|374565379|gb|EHR36650.1| hypothetical protein HMPREF9708_01322 [Facklamia languida CCUG
37842]
Length = 228
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 8/185 (4%)
Query: 134 TNILLAVNVLVYIAQFATQ------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
T L+A+NVLV+I T + L+ GAK N ++ +G+++RL T+AF+H H
Sbjct: 13 TYFLVAINVLVFIYMLMTFKTTTSFEALIETGAKSNPHIVYQGEWYRLVTAAFIHIGFEH 72
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L+ N S+ IG +E++ G R G++ ++I + S+ F + + GAS IFGL +
Sbjct: 73 LLFNNLSIYFIGQDLERLMGHLRLFGLFMIASIGGNIFSFAFSEAISAGASTGIFGLFVA 132
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ + + G K+ + + +I+ N+ GL+ G+DNWGH+GG + G + ++G
Sbjct: 133 YIILAKMYPQSY-GLKKRAMNFSLLILLNIVTGLMGSGLDNWGHIGGAVFGGLATLVIGL 191
Query: 307 ALKYE 311
+Y
Sbjct: 192 DGRYR 196
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LAV + V+I T L+ +GAK N LI +GQ+WRL F+H I HL
Sbjct: 148 FTYVFLAVQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLIMPVFIHIGIMHL 207
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 208 FMNSLSLYYIGPLVERIYGKARFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 267
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+R++ + + +II N+ G + GIDN
Sbjct: 268 LYIGTAYRDLF--FRTMGSSVITLIIINLVFGFSVSGIDN 305
>gi|311030831|ref|ZP_07708921.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
sp. m3-13]
Length = 503
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N I +G++WR T LH HL++N ++ +G +E+I G R+L
Sbjct: 204 ETLVKYGAKYNPAILEGEWWRFFTPIVLHIGFLHLLLNTMAIFYLGSAVERIYGNIRFLA 263
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNI----LGGGKEELQHL 268
+Y + S S+ F +S + GASGAIFG G+ + H + +G ++
Sbjct: 264 IYLFAGFTGSLASFVFTSSLSAGASGAIFGCFGALLFVGIIHPKMFFRTMGA------NI 317
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+I N+AIG I GIDN GH+GGL+GG
Sbjct: 318 LVLIGINLAIGFTIPGIDNAGHIGGLIGG 346
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 101/183 (55%), Gaps = 18/183 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL----LLWGA----KINSLIDKGQFWRLATSAFLHA 182
R T IL+ +NV V++A A D L +L+GA S + +GQ++RL T+ FLH
Sbjct: 69 RLITMILIGINVAVFLAVQAVGDSLVQDLILYGAWPPVDPTSGVAEGQWYRLLTATFLHQ 128
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAI 240
N+ H+ N SL IGP +E G R+L VY SA+ SA+S+ N A +GASGA+
Sbjct: 129 NVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSALGGSALSFLLANPNAGSLGASGAV 188
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GHVGGLLGGAA 299
FGL+G+ V + R R + + + +I+ N+ G +W H+GGL+ GA
Sbjct: 189 FGLLGATFVLMRRLRY-------DSRPIVAIIVLNLFFTFAQTGTIDWRAHIGGLVTGAV 241
Query: 300 ISW 302
+++
Sbjct: 242 VAF 244
>gi|410460563|ref|ZP_11314238.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
gi|409926821|gb|EKN63973.1| hypothetical protein BAZO_14959 [Bacillus azotoformans LMG 9581]
Length = 507
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+++++ + L+ +GAK N I +G +WR T FLH HL
Sbjct: 178 TYVLVVINLIMFLLLELVGSGSTDLSTLIKFGAKYNPAILEGDWWRFITPMFLHIGFLHL 237
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G ++E+I G R+L +YF++ I S+ F + GASGAIFG G+
Sbjct: 238 LMNTLALYYLGISVERIYGTWRFLILYFAAGITGGVASFAFTTQVSAGASGAIFGCFGAL 297
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F + H ++ + ++ V+ N+A G L+ +DN H+GGL+GG
Sbjct: 298 LYFGVVHPSLF--LRSMGWNIIVVLGINLAFGFLVPMVDNSAHIGGLIGG 345
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 136 ILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+L+ +NV +++ FA D L +GA LID+G+ WRL FLH + HL+ N
Sbjct: 63 VLIGINVAMFLLTAFAGGSTDPDVLTAFGACNRKLIDQGEVWRLVVPMFLHIGMIHLLAN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 123 MYALWVLGPQLESLYGSARFTILYLLSGIGGFVASYFFAHPESIGAGASGALFGMFGALL 182
Query: 249 VFIMRHR-NILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
VF+ ++R I + +Q + +I N+ I I I GHVGGLL G ++
Sbjct: 183 VFVYKYRAEIPPMVRATMQRGVWLTLIINLVITFSIPFISRSGHVGGLLTGIGLA 237
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V+ ++ L+ +GAK+NSLI G+ WR TS F+H HL N
Sbjct: 139 LIGINLVVFFLMTLAGGSQNREVLIAFGAKVNSLILAGEVWRFFTSMFIHIGYLHLGFNL 198
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
Y+L +GP EK+ G R+L +Y S + S S+ F + + GASGAIFGL+G+ +
Sbjct: 199 YALWVLGPFTEKLFGHWRFLVIYLLSGLGGSIASFFFTSGLSAGASGAIFGLLGALLYYS 258
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
++ + G +L V++ N GL GIDN+ H
Sbjct: 259 LKRPWLWKSGLG--MNLVLVLVINFGFGLTQPGIDNFAH 295
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 134 TNILLAVNVLVYI--AQFATQD------------KLLLWGAKINSLIDKGQFWRLATSAF 179
T I+L +N+ +YI A F+ Q L+ +GAK + L+ +G++WRL T+ F
Sbjct: 57 TTIILLMNIGLYIVTAVFSLQSGNSDAFFNLDGRTLIAFGAKFDPLLAQGEWWRLVTAGF 116
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LH + H+ +N ++L +G +E+ G R +YF + + S + + +VGAS
Sbjct: 117 LHGGMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATVTGFYASAVWSPALSVGASAG 176
Query: 240 IFGLVGSFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKG-IDNWGHVGGLLGG 297
IFGL+G+ F +RH G + + A + N+ G+L G IDN H+GGL+GG
Sbjct: 177 IFGLLGAMIAFGVRHHGFTGDAFRSQYMFWAGL---NLLFGILGSGRIDNAAHIGGLIGG 233
Query: 298 AAISWLLG 305
A++++ G
Sbjct: 234 FAVAYMAG 241
>gi|118442959|ref|YP_877647.1| rhomboid family membrane protein [Clostridium novyi NT]
gi|118133415|gb|ABK60459.1| conserved membrane protein (rhomboid family) [Clostridium novyi NT]
Length = 202
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GA N+L+ G+++RL T FLH + HL+ N Y+L +IGP +E+I G +Y+ +Y
Sbjct: 53 LLFLGANENTLVSNGEYYRLFTCMFLHGGLIHLLANMYALGAIGPIVERIYGKVKYIIIY 112
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I SS S+ F ++GASGAIF L+G + + ++I+G G ++ + +I+
Sbjct: 113 LVGGIISSIASHFFLRGVSIGASGAIFALLGVMLIITIERKDIVGNGV--IKDIVFIIVI 170
Query: 275 NMAIGLLIKGIDNWGH 290
N+ IGL IDN+ H
Sbjct: 171 NIFIGLSSNDIDNFAH 186
>gi|319651546|ref|ZP_08005673.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
gi|317396613|gb|EFV77324.1| hypothetical protein HMPREF1013_02285 [Bacillus sp. 2_A_57_CT2]
Length = 506
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I + + V V++ A L+ +GAK N LI G++WR T LH + HL
Sbjct: 181 FTYIFIFIQVAVFLVLEAMGGSTDTSTLIKYGAKFNPLILDGEWWRFLTPIVLHIGLLHL 240
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E++ G R+L +Y ++ + S+ F + + GASGAIFG G+
Sbjct: 241 LMNTLALFYLGSAVERVYGNLRFLFIYLAAGFGGTLASFIFSPTLSAGASGAIFGCFGAL 300
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F + + ++ + ++ V+ N+A G I GIDN GH+GGL+GG
Sbjct: 301 LYFGLIYPSLF--FRTIGFNIIVVLGINLAFGFTIPGIDNAGHIGGLIGG 348
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ VLVY A +T +LL GA+ SLI +G++WRL + FLH ++HL+
Sbjct: 12 TLILIVFQVLVYCWLVYAGGSTNTVILLKMGARSTSLIREGEWWRLVSPVFLHVGLSHLV 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
VN +L IG +E+ G R + +YF SAI + S F + + GAS AIFGL G+F
Sbjct: 72 VNSVTLLYIGRYIEEFFGHWRMVVIYFISAIFGNLASAVFMPLTISAGASTAIFGLFGAF 131
Query: 248 AVF-IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ + HRNI+ + + +I N+ + + G+D GH+GGL GG I++++G
Sbjct: 132 LMLGVCFHRNIV--VRVLSRTFLLFVIINIVMDFFLPGVDLVGHIGGLFGGFFIAFIVGA 189
Query: 307 AL 308
+
Sbjct: 190 PM 191
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 97/174 (55%), Gaps = 8/174 (4%)
Query: 134 TNILLAVNVLV-YIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+ +N+++ ++ F ++ WG N ++ G++WRL T FLH ++ H +
Sbjct: 19 VSVLVIINLILWFVVNFLGLPIGREIYYWGVGSNFMVAAGEYWRLVTPIFLHGDLMHALF 78
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF 247
N +SL GP +E++ G ++L +F + I ++A +Y F N +GASGAIFGL G +
Sbjct: 79 NSFSLVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPLNYTHLGASGAIFGLFGIY 138
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
++ ++++ Q + ++I ++ + L I+ + H+ G +GG AI+
Sbjct: 139 TFMVLFRKHLIDYSSS--QMITTILIISLVMTFLRNNINIYAHIFGFIGGFAIA 190
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 134 TNILLAVNVLVYIA---------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+ +N+L ++A + ++ G I L + ++WRL TS FLH ++
Sbjct: 29 TYALIGINLLAFVAVVLQAGGVASLLQRSTIMQQGTLITGLGFQDEYWRLLTSGFLHWSV 88
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFG 242
H+ +N SL IG +E++ GP RYL VY + SA M+ N GASGA++G
Sbjct: 89 VHIAMNMISLYLIGADLERVLGPVRYLAVYLIGLLGGSAAVMALGSENVATAGASGAVYG 148
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG----A 298
L+G+ + ++R K L VI+ N+ + L I GI W H GG + G A
Sbjct: 149 LLGALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGISIWAHFGGFVFGAASAA 201
Query: 299 AISWL 303
AI WL
Sbjct: 202 AIIWL 206
>gi|449015504|dbj|BAM78906.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 364
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 12/187 (6%)
Query: 134 TNILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
T ++ +N+L Y+A+ A + LL GAKINS I GQ WRL T FLH
Sbjct: 110 TTGIIGINILTYLAELYFEVEGKLSGANSNILLALGAKINSAIAAGQLWRLFTPIFLHGG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL+ N Y+L +I E GP + +Y +S + +SY F +VGAS +IFGL
Sbjct: 170 LLHLLSNTYALYAISYECEMAYGPLAFAVIYLASGAWGNLLSYWFTPYLSVGASSSIFGL 229
Query: 244 VGSFAVFIMRHRNILG-GGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAIS 301
++ V+++ + ILG + ++ L +++FN A G IDN H+GG + GA +S
Sbjct: 230 FSAYIVYLVNNYAILGRQARRQITVLVALVVFNFAFGSTPGDAIDNSAHLGGAIAGALLS 289
Query: 302 WLLGPAL 308
++ P L
Sbjct: 290 EIVVPEL 296
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 33/218 (15%)
Query: 106 GGTRKNSGHEGTSHLDTARTNLFIGRQ-----WTNILLAVNVLVYIAQFATQDKL----- 155
GG + H G + +F R T +LAVNVLV++ A L
Sbjct: 4 GGQEQRRQHRGYQEAGFGQRTVFGARLSRSVLVTQAILAVNVLVFLLTVAQAGSLNDNDL 63
Query: 156 -------LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+G ++ + G++WR+ T+ FLH H+ VN +SL +G ++E++CG
Sbjct: 64 SSAFQHGALYG---DATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQVCGRG 120
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHR-NILGGGKE 263
R+L +YF S + +SA F N VGASGA+FGL+G++AV +++ R N G
Sbjct: 121 RFLALYFVSMLGASASVLLFGNPGGYPGTVGASGALFGLMGAYAVTVLKLRLNPTG---- 176
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
L + N I I GI +GH+GGL+ GA ++
Sbjct: 177 ----LIITLALNAFITFGIPGISIFGHIGGLVTGALVT 210
>gi|393788564|ref|ZP_10376691.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
gi|392654244|gb|EIY47892.1| hypothetical protein HMPREF1068_02971 [Bacteroides nordii
CL02T12C05]
Length = 467
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 134 TNILLAVNVLVYIAQ-------FATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +NVLV+I F + +LL WGA L G +WR T F+H I
Sbjct: 38 TPILLGINVLVFILMTLSGVNLFEPKTLELLQWGADFGPLTLTGSWWRTLTCNFVHIGIV 97
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
H+++N Y+L IG +E + G RR Y + + S+ S + + + GASGAIFGL
Sbjct: 98 HILMNMYALVYIGVLLEPMFGTRRMFAAYLLTGLCSAVSSLFWHAETISAGASGAIFGLY 157
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIF---NMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G F F+ H +I + L L+ ++IF N+ GL +GIDN H+GGL+ G +
Sbjct: 158 GIFLAFLCFH-HIEKAQRNAL--LSSILIFVGYNLIYGLK-EGIDNAAHIGGLISGFILG 213
Query: 302 WLLGPAL 308
++ AL
Sbjct: 214 FVYVMAL 220
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 20/183 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKG----QFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L+ + I LI Q+WRL TS FLH ++ H
Sbjct: 18 TYTLIAINVVVFAAVLLQAGGTTLFYSSIYREGVLISGAGFDDQYWRLLTSGFLHQSVPH 77
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L +N +SL IG +E+ G RYL +Y S + SA M+++ + GASGAI+GL+
Sbjct: 78 LAINMFSLYIIGADLERALGRGRYLAIYLVSLLGGSAAVMAFQSGVTATAGASGAIYGLM 137
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA----I 300
G+ + ++R K +Q + VI N+ I + I GI +GH+GGL+ GAA +
Sbjct: 138 GALLILLLRV-------KAPVQTVLGVIAINIVISVTIPGISLFGHLGGLVFGAAAAGVV 190
Query: 301 SWL 303
WL
Sbjct: 191 VWL 193
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 11/178 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN LL +N LV++ Q + ++ D G+++RL T+ LH HL N +
Sbjct: 80 TNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYRLVTAVMLHGGWGHLAGNSMA 139
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIM 252
L +IG E G +++ +Y S ++ + +S +P++GASGAIFGL+G+ A M
Sbjct: 140 LFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLTPSLGASGAIFGLLGAEA---M 196
Query: 253 RHRNILGGGKEEL----QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
H L G K + + + F + +GLL+ ID+WGH+GG +GGAA++ L+ P
Sbjct: 197 IH---LAGPKASMPLFVSSVGQTAFFAVLVGLLVPNIDHWGHLGGFVGGAALTLLIQP 251
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 133 WTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T + LA+ + V+I T L+ +GAK N LI +GQ+WRL T F+H HL
Sbjct: 174 FTYVFLALQIAVFIVMSLTGGTQNTQNLIRFGAKYNPLIMEGQYWRLITPVFIHIGFMHL 233
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+N SL IGP +E+I G R+ +Y + S+ F S + GASGAIFGL G+
Sbjct: 234 FMNSLSLYYIGPLVERIYGKGRFALIYLFAGFTGCLASFLFSPSLSAGASGAIFGLFGAL 293
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+R++ + + +II N+ G + GIDN
Sbjct: 294 LYIGTAYRDLF--FRTMGSSVITLIIINLVFGFSVSGIDN 331
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T+ILL N+L+++ +LL WGA S G +WRL +S FLH I
Sbjct: 319 TSILLDFNILIFLLMTFSGVHIISPNGIELLEWGANRRSETTGGDWWRLVSSMFLHGGIM 378
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL +N Y L +E + G +Y +YF+S I S S Y + N+ +VGASGAIFGL
Sbjct: 379 HLFLNIYGLVIAALFVEPVFGRIKYFILYFASGICGSLASIYWYENTISVGASGAIFGLY 438
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
G+ ++ + G L + + N+ +G L GIDN H+GGL+ GA +L
Sbjct: 439 GAVLGLLLTNAFPKDGKIGILMFIGPYVGVNLLVG-LTGGIDNAAHIGGLVSGAVFGIIL 497
Query: 305 GPALK 309
+K
Sbjct: 498 YLTVK 502
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 72 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 131
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 132 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 191
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 192 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 243
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 244 AGMLGAPAL 252
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 7/148 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK N LI +G++WR T FLH HL++N ++L IG +EKI G R+L
Sbjct: 208 ETLVFFGAKFNPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLF 267
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y + I S+ F +P + GASGAIFG G+ F + + ++
Sbjct: 268 IYLLAGIIGCIASFYF--NPVGLSAGASGAIFGCFGALLYFGYTFPQVF--FRTMGMNIL 323
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
++ N+ +G + GIDN GH+GGL+GG
Sbjct: 324 VIVGLNLVLGFTVPGIDNAGHIGGLVGG 351
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+L+GAK N LI G +WRL T FLH HL VN + IG +EKI G R+ +Y
Sbjct: 46 LILFGAKFNPLIVMGDWWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIY 105
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHLAKVI 272
S +A + S+ F +S + GAS +IFGL FA +M G +E + +I
Sbjct: 106 LLSGVAGNVASFAFSDSVSAGASTSIFGL---FATTLMLAETFKGNAYYREIAKTFGILI 162
Query: 273 IFNMAIGLLIKG---IDNWGHVGGLLGGAAIS 301
+FN G L G +DN GH GGL+GG I+
Sbjct: 163 VFNFITGFLSIGDGNVDNAGHAGGLVGGFLIA 194
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q+WRL T FLHA + H++ N +L IGP E+ G R++LG+Y I + MSY F
Sbjct: 4 QYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYLFA 63
Query: 230 N-SPAVGASGAIFGLVGSFAVFIM--RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
+ +VGAS A+FG+ G ++ + +H + + + + + ++ N+ G GID
Sbjct: 64 PLTVSVGASSALFGMFGGLILYAVQFKHDSRI---RAQGTMMGLFVVLNLMSGFFSTGID 120
Query: 287 NWGHVGGLLGGAAISWLLG 305
WGH+GGL+GG + + G
Sbjct: 121 MWGHIGGLIGGMMFAVMFG 139
>gi|227524649|ref|ZP_03954698.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
gi|227088133|gb|EEI23445.1| S54 family peptidase [Lactobacillus hilgardii ATCC 8290]
Length = 234
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 17/191 (8%)
Query: 128 FIGR-----QWTNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATS 177
F+GR T LL + VLVY+ T++ L+ +GAK N LI G++WRL T
Sbjct: 14 FMGRLRDKPYMTYALLGIMVLVYLLMTISGGTENVANLVRFGAKYNPLIRAGEYWRLLTP 73
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
F+H H+++N +L IG +E + G R+L ++ S IA + S+ F S + GAS
Sbjct: 74 IFIHIGFTHILMNGITLYFIGQYVETLFGHWRFLLIFLVSGIAGNLASFAFSPSLSAGAS 133
Query: 238 GAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
+IFGL G+F + R++ I+ + L I+ N+A + + GID H+GGL
Sbjct: 134 TSIFGLFGAFMMLGESFSRNQAIVSMARTFLLF----IVLNIATDIFVSGIDIASHLGGL 189
Query: 295 LGGAAISWLLG 305
+GG I+++ G
Sbjct: 190 VGGFLIAYVSG 200
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG +S
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVS 193
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 137 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 188
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 189 AGMLGAPAL 197
>gi|384250516|gb|EIE23995.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 306
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 136 ILLAVNVLVYIAQF----------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+LLA+N+ VY A A QD L AK + ++ G+++RL T+ FLH +
Sbjct: 59 LLLAINLGVYGAGLVAGLGPEGADAQQDYFLAL-AKTDVGVEAGEYYRLITANFLHDSFV 117
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
HL +CY+L ++ P +E++ G +L Y S++ S ++ ++ VGAS IFG++G
Sbjct: 118 HLGSSCYALATVAPAIEEVLGWDIFLATYLLSSVGGSVGTFILGDAVTVGASSGIFGVIG 177
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +++++R++ K +L +A V+ N+ +G GH GLL GA I + L
Sbjct: 178 ALVAYLLKNRSLERTSK-QLVSIAGVVGVNLVMG---------GHAAGLLTGAYIGYGLS 227
Query: 306 PALKYEFTSDD 316
P L S D
Sbjct: 228 PVLLPPKKSSD 238
>gi|227530504|ref|ZP_03960553.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
gi|227349609|gb|EEJ39900.1| S54 family peptidase [Lactobacillus vaginalis ATCC 49540]
Length = 220
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA++ SLI +GQ+WRL T FLH IAHL++N +L +G +E++ R L +Y SA
Sbjct: 42 GARVTSLIHEGQWWRLITPVFLHIGIAHLIINSITLYFLGMYIEELFSHWRMLVIYLVSA 101
Query: 219 IASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VII 273
+ A +Y N+ + GAS A+FGL G+F + + E +Q L++ ++
Sbjct: 102 FTGNLASAYFLPNTISAGASTALFGLFGAFLMLGESFHD-----NELIQDLSRQFLILVG 156
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N+ + + G+D GH+GGLLGG IS+++G
Sbjct: 157 INIVMDFFLPGVDLAGHIGGLLGGFLISYVVG 188
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLITPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 137 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 188
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 189 AGMLGAPAL 197
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 19/189 (10%)
Query: 116 GTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLA 175
G + + TAR + WT LLA+N+L Y+A+ ++++ + + +G++WRL
Sbjct: 72 GGAPVTTARVS------WT--LLAINLLAYVAEVLDPERVISAYGMWSIGVYQGEWWRLI 123
Query: 176 TSAFLHA---NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP 232
TSAFLHA + H++ N ++L IGP +E++ G R+ +Y SA+ S Y F
Sbjct: 124 TSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLLSALGGSVAIYLF-GVA 182
Query: 233 AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVG 292
A+GASGAI+GL G A+F++ R LG +++ + +I N+ I ++ GI GH+G
Sbjct: 183 ALGASGAIYGLFG--ALFVVARR--LG---TDVRGVLWLIGINVLITFVVPGISWQGHLG 235
Query: 293 GLLGGAAIS 301
GL+ G ++
Sbjct: 236 GLVTGTVVA 244
>gi|312137531|ref|YP_004004867.1| serine peptidase [Rhodococcus equi 103S]
gi|311886870|emb|CBH46178.1| putative serine peptidase [Rhodococcus equi 103S]
Length = 321
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 34/211 (16%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------------------WGAKINSLIDKGQF 171
T +L+A+NVL++ A A Q K L+ W +S + +G+
Sbjct: 86 TYVLIALNVLIF-AITALQAKSLMDNGGGVVNRFTGVATFDSPLFGWMVLDSSAVAQGEL 144
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS 231
+R+ S FLH + HL VN ++L +G E + G RYL VY S + SA + F S
Sbjct: 145 FRVIGSGFLHFGLIHLAVNMFALWVLGRDTEIVLGRSRYLAVYLISLLGGSASALMF-ES 203
Query: 232 P---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
P GASGAIFG++G+ AV ++R R + VI N+ I L + GI W
Sbjct: 204 PFAFTAGASGAIFGIMGAQAVLLLRMR-------RSATPVLTVIGINVVISLTVPGISLW 256
Query: 289 GHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
GH+GGL+ GAA + +L A + T D R
Sbjct: 257 GHLGGLVAGAAATAVLVYAPTGQRTPADVAR 287
>gi|373464451|ref|ZP_09555990.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
gi|371762653|gb|EHO51182.1| peptidase, S54 family [Lactobacillus kisonensis F0435]
Length = 220
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
Query: 137 LLAVNVLVYIAQFA---TQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V+V++ T D L+ +GAK N I G++WRL T F+H H+++N
Sbjct: 14 LLAIMVIVFLTMTVMGGTTDPGTLVRFGAKYNPAIRAGEYWRLITPMFIHIGFTHILMNG 73
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251
+L IG +E++ G R+L ++ S I + S+ F GAS AIFGL G+F +
Sbjct: 74 ITLYFIGEYVEQLFGHWRFLTIFLVSGIVGNLASFVFSYGLTAGASTAIFGLFGAFMMLG 133
Query: 252 MRHRNILGGGKEELQHLAKV----IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +AK I+ N+ + ++GID GH+GGL+GG I++++G
Sbjct: 134 ESFSK-----NPVITSMAKTFLLFIVLNIGTDIFVQGIDIAGHIGGLIGGFLIAYVVG 186
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 91/182 (50%), Gaps = 22/182 (12%)
Query: 137 LLAVNVLVYIA---QFATQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+AVN+ +IA Q LLL GA + L + ++WRL TS FLH +I H+
Sbjct: 32 LIAVNLAAFIAVVLQAGGTSNLLLKSSIMQQGALVTGLGLENEYWRLLTSGFLHWSILHV 91
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVG 245
+N SL IG +E++ GP RYL VY SA A GASGAI+GL+G
Sbjct: 92 AMNMISLYLIGADLERVLGPARYLAVYLIGLFGGSAAVVALGPELAATAGASGAIYGLLG 151
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG----AAIS 301
+ + ++R K L VI+ N+ + L I GI W H GG + G AAI
Sbjct: 152 ALLIVVIRL-------KLPATTLITVIVLNVVLSLSIPGISIWAHFGGFVFGAASAAAII 204
Query: 302 WL 303
WL
Sbjct: 205 WL 206
>gi|413925970|gb|AFW65902.1| hypothetical protein ZEAMMB73_057038 [Zea mays]
Length = 503
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 10/213 (4%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKINSL 165
+ S LD + G TN+L VN+ V + + A+ K LL+GAKIN+L
Sbjct: 246 DEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNL 305
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WRL T LH+ H+ + C++L GP + + G R + +Y I + S
Sbjct: 306 ILSGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSS 365
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG- 284
+ V +G +F L+G++ V+ +++ ++ E VI ++ L I G
Sbjct: 366 FVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGR 425
Query: 285 IDNWGHVGGLLGGAAISWLLGPALKYEFTSDDG 317
IDNW H+G + G +L P+++++ ++ +G
Sbjct: 426 IDNWAHLGATISGIFFGYLTCPSVEFDNSAKNG 458
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 193
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 193
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I L +N+ I + + +GAK N I G++WR T FLHA++ HL N SL
Sbjct: 192 IWLVMNIYARIKNIDVSNLFIPFGAKENFSIMSGEYWRFITPIFLHADLEHLFANSLSLF 251
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH- 254
G +E + G +++ +Y ++ + + S+ F VGASG+IFG G+ + +
Sbjct: 252 VFGRIVEGMYGHKKFTFIYLAAGVIGNVASFMFSTYSGVGASGSIFGFFGALLYLWVENP 311
Query: 255 ---RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
R G ++ +I+ N+A G GIDN+ HVGGL+GG
Sbjct: 312 AAFRRYFG------NNILIMIVINLAYGFASPGIDNFAHVGGLIGG 351
>gi|331701529|ref|YP_004398488.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128872|gb|AEB73425.1| Peptidase S54, rhomboid domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 220
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ +
Sbjct: 36 TLVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVI 95
Query: 214 YFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAK 270
+F S I + S+ F +S + GAS AIFGL G+F + ++ I+ K L
Sbjct: 96 FFVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAFMMLGESFSKNPAIVSMAKTFLLF--- 152
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
II N+ + + GID GH+GGL+GG ++++ G
Sbjct: 153 -IILNIGTDIFVSGIDIAGHLGGLVGGFLVAYVTG 186
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 193
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 193
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 21/178 (11%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TYALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGGAAIS 301
V + R N+ +++ +A +II N+ + +GI GHVGGL+ GAAI+
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLVFTFVYPLISGQGISWQGHVGGLVTGAAIA 245
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 75 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 134
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 135 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 194
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 195 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 246
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 247 AGMLGAPAL 255
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 187
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +L V +LV++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILVVTILVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 137 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 188
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 189 AGMLGAPAL 197
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-------IDKGQFWRLATSA 178
R T ILL + + ++AQ A D+ L+ A + +L + +GQ++RL TS
Sbjct: 83 RLVTKILLGICAVAFLAQQALGDEFTDRFDLIGRALMPALGWDQLQGVAEGQWYRLLTSM 142
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGA 236
FLH +I H++ N SL IG +E G RYL ++F S +A SA++Y N ++GA
Sbjct: 143 FLHGSIIHILSNALSLWWIGGPLEAALGRARYLALFFVSGLAGSALTYLVAEPNQASLGA 202
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
SGAIFG+ G+ AV + R R +++ + +++ N+ I GI HVGGL+
Sbjct: 203 SGAIFGVFGAMAVLMRRQRY-------DMRPMIAILVINLIITFGWSGIAWQAHVGGLVA 255
Query: 297 GAAI 300
G I
Sbjct: 256 GVII 259
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 187
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 13 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPIFLHIGFMHI 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N +L IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 73 ILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 133 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 187
>gi|406027090|ref|YP_006725922.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
gi|405125579|gb|AFS00340.1| membrane-associated serine protease [Lactobacillus buchneri CD034]
Length = 220
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N LI G++WRL T F+H H+++N +L IG +E++ G R+ +
Sbjct: 36 TLVEFGAKYNPLIRAGEYWRLITPMFIHIGFTHILMNGITLYFIGQYVEQLFGHWRFAVI 95
Query: 214 YFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF---IMRHRNILGGGKEELQHLAK 270
+F S I + S+ F +S + GAS AIFGL G+F + ++ I+ K L
Sbjct: 96 FFVSGIMGNLGSFAFTDSLSAGASTAIFGLFGAFMMLGESFSKNPAIVSMAKTFLLF--- 152
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
I+ N+ + + GID GH+GGL+GG ++++ G
Sbjct: 153 -IVLNIGTDIFVSGIDIAGHLGGLVGGFLVAYVTG 186
>gi|302787811|ref|XP_002975675.1| hypothetical protein SELMODRAFT_415641 [Selaginella moellendorffii]
gi|300156676|gb|EFJ23304.1| hypothetical protein SELMODRAFT_415641 [Selaginella moellendorffii]
Length = 173
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 60/159 (37%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T+++L+LWGAK+ CYS++S+GP +E + G +R+
Sbjct: 70 TENRLILWGAKLT---------------------------CYSVHSLGPHLESLGGSKRF 102
Query: 211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
L V+ +A+ + +S+ C SPAVGASGAI GLV
Sbjct: 103 LVVFAVAAVTTPCLSFLMCKSPAVGASGAICGLVR------------------------- 137
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
GL+ +DNWGH+GG +GGA +SWL+GPAL+
Sbjct: 138 --------GLMSHEVDNWGHLGGFVGGAFVSWLIGPALR 168
>gi|116789343|gb|ABK25213.1| unknown [Picea sitchensis]
Length = 301
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 12/198 (6%)
Query: 122 TARTNLFIGRQWTNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFW 172
+ T++ N L A+N+ V++ + A+ K LL+GAKIN LI G++W
Sbjct: 39 VSSTDVSYNSYLINTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNGEWW 98
Query: 173 RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP 232
RL T FLH+ + H+ + ++L + GP ++ G + +YF + + MS+
Sbjct: 99 RLITPKFLHSGLLHIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHTPDA 158
Query: 233 AVGASGAIFGLVGSFAVFIMRHRNILGGGKEE--LQHLAKVIIFNMAIGLLIKGIDNWGH 290
VG +G + ++GS+ +++ ++R LG + +Q +A + ++A+ L ID+W H
Sbjct: 159 TVGGTGPVLAIIGSWIIYLFQNREALGEEMADNLIQKVAVASVLSVALSYLTP-IDDWTH 217
Query: 291 VGGLLGGAAISWLLGPAL 308
+G G + P +
Sbjct: 218 LGAACAGLIFGVFICPVV 235
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 50 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 108
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 109 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 164
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 165 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 217
Query: 283 KGIDNWGHVGGLLGGAAIS 301
I GHVGGL+ GA ++
Sbjct: 218 PAISWQGHVGGLVTGALVA 236
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 20/185 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N+ V+ A A L L WGA GQ+WRL ++ FLH +
Sbjct: 22 TVVLIALNLAVFAAMLAGGAGLWHSQNGVQLAWGANFGPATKDGQWWRLGSAMFLHFGLL 81
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL +N SL G +E++ GP R+L +Y S + + +S AV GASGAIFG+
Sbjct: 82 HLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGDRAVSGGASGAIFGV 141
Query: 244 VGSFAVFIMRHRNILGGGKEELQHL----AKVIIFNMAIGLLIKGIDNWGHVG----GLL 295
G+ F+ + R+ L + E L + +GL I GIDN H+G GLL
Sbjct: 142 YGALLAFLWQQRDTL--DRREFVRLFWGAGLFAAITIVLGLNIPGIDNGAHIGGFISGLL 199
Query: 296 GGAAI 300
GAA+
Sbjct: 200 AGAAL 204
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGHVGGLLGGAAIS 301
I GHVGGL+ GA ++
Sbjct: 183 PAISWQGHVGGLVTGALVA 201
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 21/178 (11%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVLV++ Q + + + +LW + G+++RLATSAFLH HL+ N
Sbjct: 79 TFALIAVNVLVFLMQTTSGQLEREFVLW----TPGVADGEWYRLATSAFLHYGAMHLLFN 134
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G+
Sbjct: 135 MWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMF 194
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGGAAIS 301
V + R N+ +++ +A +II N+ + +GI GHVGGL+ GAAI+
Sbjct: 195 V-VARKLNL------DIRGIAAIIILNLVFTFVYPLISGQGISWQGHVGGLVTGAAIA 245
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 13 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 71
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 72 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 127
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 128 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 180
Query: 283 KGIDNWGHVGGLLGGAAIS 301
I GHVGGL+ GA ++
Sbjct: 181 PAISWQGHVGGLVTGALVA 199
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++NVLV++ Q + +L LW + S
Sbjct: 15 REGARTVRQPRTQ-FGGRQRSATPVVTYTLISLNVLVFVMQVTVMGLERQLALWPPGVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGHVGGLLGG 297
I GHVGGL+ G
Sbjct: 183 PAISWQGHVGGLVTG 197
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 134 TNILLAVNVLVYIAQFATQD-----KLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T LL ++++V++ T L+ WGA + L+ + ++WR T FLH H+
Sbjct: 19 TYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNHEYWRFITPMFLHIGFMHI 78
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVG 245
++N ++ IG +E I G RYLG+Y S IA + S+ F NS + GAS A+FGL G
Sbjct: 79 ILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFGTPNSVSAGASTALFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+F V + RH +Q + I+ N+ L +D GHVGGL+GG ++
Sbjct: 139 AF-VILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMMGHVGGLIGGLLVA 193
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 137 LLAVNVLVYIAQFATQDKLLLW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+A+N+++Y+ LLW G + N L+ KG++WR+ ++ FLHA H+ N +SL
Sbjct: 21 LIAINLILYVLSLLPGVGTLLWNYGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ +Y S I + +Y F +S ++GASGAIFG+ G+F +
Sbjct: 81 YLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVY 140
Query: 253 RHRNIL 258
R +
Sbjct: 141 YTRRTM 146
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 137 LLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+A+NVL +I Q ++ +L+LW + + GQ +RL TSAFLH HL++N ++
Sbjct: 67 LIALNVLAFIGQMSSHQLDSELVLW----SPAVADGQLYRLLTSAFLHYGAMHLLLNMWA 122
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L +GP +E + G R+ +Y SA+ S Y N+ GASGAIFGL G A I
Sbjct: 123 LYVVGPPLEGLLGRSRFSALYLLSALGGSVTVYLLAPLNTATAGASGAIFGLFG--ATLI 180
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ R + ++ +A +I+ N+ I I GHVGGL+ G
Sbjct: 181 VGRRL-----QMDIGWVAAIIVINLVFTFTIPQISWQGHVGGLVTG 221
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 134 TNILLAVNVLVYIA-------QFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T +LAV +LV+IA Q A + L+ +GAK I Q+WRL T FLHA
Sbjct: 15 TMSILAVTILVFIAEGLFSGGQTANGEFLVSFGAKWGPYIHHYDQYWRLLTPVFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+ N +L IGP E+ G ++LG+YF I + MSY F + +VGAS A+F +
Sbjct: 75 HIATNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGNIMSYLFAPLTISVGASTALFAMF 134
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G ++ ++ + I + + + ++ N+ G ID WGH+GGL+GG +
Sbjct: 135 GGLILYAVQFKEDPRI----RSQGTIMILFVVLNLVTGFASTDIDMWGHIGGLIGGMMFT 190
Query: 302 WLLG 305
+ G
Sbjct: 191 VIFG 194
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 54 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 113
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 114 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 170
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
A + +FN+ + + +D W H+GGL+ G S
Sbjct: 171 FAALALFNLISNIGDQSVDIWAHIGGLISGILTS 204
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 23/198 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+++N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGHVGGLLGGAAI 300
I GHVGGL+ GA +
Sbjct: 183 PAISWQGHVGGLVTGALV 200
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +YL
Sbjct: 49 QSLILLGGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLL 108
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEELQH 267
+Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +L
Sbjct: 109 IYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQLVV 165
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
A + +FN+ + + +D W H+GGL+ G S
Sbjct: 166 FAALALFNLISNIGDQSVDIWAHIGGLISGILTS 199
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 24/195 (12%)
Query: 122 TARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQF 171
TA NL T +L+ +N+ +++ Q + D LL A + +GQ+
Sbjct: 86 TADPNLV-----TKVLIGLNLALFLVQLSLGDDFTRRFELLGRASYTGFSPLEGVAEGQY 140
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--C 229
+RL T+ FLH AH++ N SL +G +EK G R+L +Y S +A SA+SY
Sbjct: 141 YRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALSYLLAAA 200
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
N P++GASGAIFGL G+ AV + R +++ + +++ N+ + GI
Sbjct: 201 NQPSLGASGAIFGLFGATAVLVRRL-------NYDMRPVIALLVINLVLTFGWSGIAWEA 253
Query: 290 HVGGLLGGAAISWLL 304
H+GGL+ G I + +
Sbjct: 254 HIGGLVAGVMIGYAM 268
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 21/185 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLL----LWG-------AKINSLIDKGQFWRLATSAF 179
R T IL+A+N+ V++A + D+L+ L G A+I + +GQ+WRL TS F
Sbjct: 80 RLITKILVAINIAVWLAALSAGDRLVNDLDLVGRAYDPGAAQIVG-VAEGQWWRLVTSIF 138
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH + H+ N SL IG +E G R++ +Y S + SA+SY N P++GAS
Sbjct: 139 LHQQLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSYLLAAQNQPSLGAS 198
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GAIFGL+G+ AV +MR N +++ + ++ N+ GI HVGGL+ G
Sbjct: 199 GAIFGLLGATAV-LMRRLN------YDMRPVIALLALNLLFTFTWSGIAWQAHVGGLVAG 251
Query: 298 AAISW 302
+++
Sbjct: 252 TVVAY 256
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 11/188 (5%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T+I+LAVNVL+ I F +Q L + +GA+ L+ G+++RL T+ F+H +
Sbjct: 7 THIILAVNVLIAIVMFFAGNLSAFRSQTYLFIRFGAQYGPLVSDGEWYRLITAIFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGL 243
HL+ N Y+L G +E + GP +++ Y ++ + + ++ F + +VGASG+IFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGNIATHLFYYRAISVGASGSIFGL 126
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISW 302
VG R + L +I+FN+ G + GI+N HVGG G + +
Sbjct: 127 VGILFSLGFRRDTPFFMKQFTGYALLPMILFNIIYGFIPGSGINNAAHVGGFALGMLLGY 186
Query: 303 LLGPALKY 310
LL P Y
Sbjct: 187 LLSPRPAY 194
>gi|419714376|ref|ZP_14241793.1| rhomboid family protein [Mycobacterium abscessus M94]
gi|382945655|gb|EIC69948.1| rhomboid family protein [Mycobacterium abscessus M94]
Length = 247
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + F N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWFSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 194
>gi|365902867|ref|ZP_09440690.1| membrane-associated serine protease [Lactobacillus malefermentans
KCTC 3548]
Length = 226
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 9/174 (5%)
Query: 136 ILLAVNVLVYIAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
I++ V +L+ + +T +L+ +GAK++SLI GQ+WRL T FLH H+++N +L
Sbjct: 21 IMVIVFLLMTVMGGSTNTYVLIQFGAKVSSLIQAGQWWRLFTPVFLHIGFEHILLNGITL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVF--- 250
+G +E+I G RY ++ +AI + S+ F NS + GAS AIFGL G+F +
Sbjct: 81 YFLGLQIERIFGHWRYFIIFVVTAIGGNLASFVFSPNSLSAGASTAIFGLFGAFLMLGES 140
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ I ++ + A I+ N+ LL GID GH+GGL+ G I +++
Sbjct: 141 FWENPYI----RQMTKTFALFIVLNLGFDLLSPGIDLSGHIGGLVAGFLIGYVV 190
>gi|259503580|ref|ZP_05746482.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168453|gb|EEW52948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 219
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 15/192 (7%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSA 178
+T+L+ T +L+A+ ++VY+ T L+ +GA + + G++WRL T
Sbjct: 2 KTSLWKDNPVTVVLIAIQLVVYLLMTLAGGSTTPAVLIRFGALQAAAVQAGEWWRLLTPV 61
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGAS 237
F+H AHL++N +L IG +E++ G R L +Y SAI + +S Y + GAS
Sbjct: 62 FVHIGFAHLLINSITLYFIGMYIEQLFGHWRMLVIYLGSAIVGNLLSAYWLPAGISAGAS 121
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGG 293
IFGL G+F + R + L+ L++ +++ N+A L++ GID GH+GG
Sbjct: 122 TGIFGLFGAFIMLGATFRE-----NQALRMLSRQFLILVVLNIATDLMVPGIDLAGHLGG 176
Query: 294 LLGGAAISWLLG 305
+GG +++L+G
Sbjct: 177 FIGGFLLAYLVG 188
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 16/186 (8%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+A+N+++++ F T LL WG ++ + G+ +RL +S F+H N H+++N
Sbjct: 162 LIAINIIIWLFMFLIINAFTNRSLLDWGGLVHFNVVHGEIYRLISSMFIHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAV 249
SL G +E I G + LG+YF S I + +S NS +VGASGAIFGL+GS FA+
Sbjct: 222 LSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVSLALDTNSISVGASGAIFGLIGSLFAI 281
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ + + L L V+ L + ++ + H+GG +GG LL +
Sbjct: 282 MYLSKQ----YTPKMLLQLVGVLALLTVFSLFMANVNIYAHLGGFIGG-----LLATFIG 332
Query: 310 YEFTSD 315
Y F D
Sbjct: 333 YYFNKD 338
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 22/189 (11%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
TN +LAV + V++ + L+ +GA++N LI GQ+WRL T F+H + H++
Sbjct: 17 TNAILAVTISVFLLETFSGGSTNNSVLVFYGARLNPLILYGQWWRLMTPVFVHIGLMHIL 76
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
VN +SL +G E++ G R+ +YF S A + S+ F N+ A GAS AIFGL+G+
Sbjct: 77 VNGFSLYYLGQMTEQLFGHWRFFLLYFISGFAGNVASFAFSPNTLAAGASTAIFGLLGAC 136
Query: 248 AVFIMRHRNILGGGKEE---LQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+LG +E ++ LA+ ++ N+ L GID +GH+GGLLGG
Sbjct: 137 L--------MLGDSFKENPVIRQLARQFLLLVGLNLLFNLFSSGIDIFGHIGGLLGGFLA 188
Query: 301 SWLLG-PAL 308
+ +LG PAL
Sbjct: 189 AGMLGAPAL 197
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 23/199 (11%)
Query: 114 HEGTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINS 164
EG + RT F GRQ T L+ +N LV++ Q + +L LW + S
Sbjct: 15 REGARAVRQPRTP-FGGRQRSATPVVTYTLILLNALVFVMQVTVMGLERQLALWPPAVAS 73
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
GQ +RL TSAFLH HL++N ++L +GP +E G R+ +Y SA+ S +
Sbjct: 74 ----GQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVL 129
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y N+ GASGA+FGL G A F++ R L +++ + +I+ N+A L
Sbjct: 130 VYLIAPLNTATAGASGAVFGLFG--ATFMVARRLHL-----DVRWVVALIVINLAFTFLA 182
Query: 283 KGIDNWGHVGGLLGGAAIS 301
I GHVGGL+ GA ++
Sbjct: 183 PAISWQGHVGGLVTGALVA 201
>gi|298245593|ref|ZP_06969399.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
gi|297553074|gb|EFH86939.1| Rhomboid family protein [Ktedonobacter racemifer DSM 44963]
Length = 294
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
L+ +GAK N +++ + ++WR T FLHAN+ HL +N +L +G +E++ G RYL +
Sbjct: 95 LIDYGAKYNPAIVQQHEYWRFLTPMFLHANLLHLGLNMLNLLMLGIFLERLLGHTRYLFL 154
Query: 214 YFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILG-GGKEELQHLAKV 271
Y + I S S+ F ++GASGAIFGLVG F++F++ HR GG + +L +
Sbjct: 155 YIITGIISILASFYFAPEEVSLGASGAIFGLVGVFSIFVITHRRAFPFGGLFSILYLIVI 214
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
I N+ +G +I +DN+ H GGL+ G + P
Sbjct: 215 IGINLGVGFMIANVDNYAHFGGLISGCLLGLCYSP 249
>gi|167763036|ref|ZP_02435163.1| hypothetical protein BACSTE_01401 [Bacteroides stercoris ATCC
43183]
gi|167699376|gb|EDS15955.1| peptidase, S54 family [Bacteroides stercoris ATCC 43183]
Length = 771
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 16/181 (8%)
Query: 130 GRQWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +N+ +++ T ++ WGA L G +WR T F+H
Sbjct: 349 GNMATPLLVYINIALFVVMSICGVSLLAPTGISIIKWGADFGPLTLTGDWWRTITCNFIH 408
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS----SAIASSAMSYRFCNSPAVGAS 237
+ H+++N Y+L IG +E++ G RR + YF SA+AS AM + + GAS
Sbjct: 409 IGVIHVLMNMYALLYIGIFLEQLIGGRRLISAYFLTGLFSALASLAMHPE---TISAGAS 465
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
G+IFGL G F +++ H I G ++ L + + + +N+ G +GIDN H+GGL+
Sbjct: 466 GSIFGLYGIFLSYLVFHHRIEKGQRKSLLYSIGFFVFYNLMSGARAEGIDNAAHIGGLVS 525
Query: 297 G 297
G
Sbjct: 526 G 526
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
A+ M + + K +Q L V+I + + L + I+ H+GG +GG I+ +
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAHLGGFIGGFLITLI 331
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
A+ M + + K +Q L V+I + + L + I+ H+GG +GG I+ +
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAHLGGFIGGFLITLI 331
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 134 TNILLAVNVLV------YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
T L+A+NVL+ Y+ F+ KLL G ++ + G+++RL TS FLH N H+
Sbjct: 159 TYTLIAINVLIWLYMKIYLNHFS-DIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHI 217
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS 246
++N SL G +E I GP + LG+Y S + + S F ++ +VGASGAIFGL+G
Sbjct: 218 LMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFASLSFNISTISVGASGAIFGLIG- 276
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
A+ M + + K +Q L V+I + + L + I+ H+GG +GG I+ +
Sbjct: 277 -AILTMMYLSKTFNKKMIIQLLVVVLIL-IFVSLFMSNINLMAHLGGFIGGFLITLI 331
>gi|406670924|ref|ZP_11078169.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
gi|405582440|gb|EKB56446.1| hypothetical protein HMPREF9706_00429 [Facklamia hominis CCUG
36813]
Length = 234
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 12/200 (6%)
Query: 137 LLAVNVLVY---IAQFATQ---DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMV 189
LL +NV+VY + +F + D L+ GAK N ++ Q++RL T +F+H HL
Sbjct: 16 LLLINVIVYAYMLIRFGSSTSFDALIATGAKSNFHIVAYHQWYRLITPSFIHIGFEHLFF 75
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
NC +L IG +E + G R+ ++F ++ + S+ + + GAS IFGL ++ +
Sbjct: 76 NCLTLYFIGQDLEALMGHWRFACLFFVASFGGNLFSFALNMNVSAGASTGIFGLFVAYVI 135
Query: 250 F--IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ H L ++ + A +I+ N+ G + GIDNWGH GG + GA I+ +LG
Sbjct: 136 LAKMYPHSFAL---QQRAINFALLIVLNIVTGFMSTGIDNWGHFGGAVFGALITLILGLG 192
Query: 308 LKYEFTSDDGFRIFSDRAPI 327
Y T D R + A I
Sbjct: 193 SGYRSTIDKRDRFLALIAVI 212
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 27/183 (14%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG----------QFWRLATSAFLHANIAH 186
L+AVN++++ A A + AK +S+++ G ++WRL TS FLH+++ H
Sbjct: 30 LIAVNLVLFAAAMAQS----VGNAKASSIMNDGALYSNRHLVFEYWRLLTSGFLHSSVPH 85
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLV 244
L +N SL +G +E++ GP RYL +Y S SA F PA VGASGAI+GL+
Sbjct: 86 LALNMISLYIVGRELERLFGPARYLTIYLMSLFGGSAAVLLFQQGPAPTVGASGAIYGLM 145
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL----LGGAAI 300
G+ V ++R K + VI N+ + + I GI W H+GGL LG A+
Sbjct: 146 GALLVVVLRL-------KLPATSVLVVIGLNIVMSISIPGISLWAHLGGLAFGALGALAV 198
Query: 301 SWL 303
WL
Sbjct: 199 LWL 201
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 9/157 (5%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ Q +LL G +++SLI KGQ++RL T FLH+++ H+ N ++L GP +EK+ G +
Sbjct: 52 SIQSSILL-GGQVSSLILKGQWYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTK 110
Query: 210 YLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRN--ILGGGKEE 264
YL +Y S + + ++ F +P +VGASGA+FGL G+ +RN I K +
Sbjct: 111 YLLIYLLSGLWGNLLTLIFDPNPNIVSVGASGALFGLFGAMISIAWFNRNNPIF---KRQ 167
Query: 265 LQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
L A + +FN+ + + +D W H+GGL+ G S
Sbjct: 168 LVVFAALALFNLISNIGDQSVDIWAHIGGLISGILTS 204
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 22/187 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL-------------IDKGQFWRLATS 177
R T ILL +NV V++A AT L +++ + + +G+++RL T+
Sbjct: 86 RLITKILLGLNVAVFVAVMATGGALSPLVNRLDLVGLAAEPGGYHLVGVAEGEWYRLLTA 145
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
FLH +AH+ N SL +GP +E G R++ +Y + + SA+SY N P++G
Sbjct: 146 MFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALSYFLAAQNQPSLG 205
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
ASGAIFGL+G+ AV + R R +++ + ++ N+ L I HVGGL+
Sbjct: 206 ASGAIFGLLGATAVLLRRLR-------YDMKPVLILLGLNLVFTFLWPNIAWQAHVGGLV 258
Query: 296 GGAAISW 302
GAA+++
Sbjct: 259 VGAAVAF 265
>gi|419967548|ref|ZP_14483436.1| rhomboid family protein [Rhodococcus opacus M213]
gi|424859689|ref|ZP_18283671.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|356661133|gb|EHI41465.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|414567056|gb|EKT77861.1| rhomboid family protein [Rhodococcus opacus M213]
Length = 305
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 95/188 (50%), Gaps = 21/188 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS- 301
L+G+ AV ++R R + VI N+ I + I GI WGH+GGL+ GAA +
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGHLGGLVAGAAATA 255
Query: 302 -WLLGPAL 308
L GP L
Sbjct: 256 GILYGPQL 263
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 29/215 (13%)
Query: 109 RKNSGHEGTSHLDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDK------- 154
++ G G + AR G R +T IL+A+N+ V++ A D+
Sbjct: 96 QRGGGGTGRAPRGDARPRTLAGGVVQGDPRLFTKILIALNLAVFLLVQAVPDQQRLLDDL 155
Query: 155 ------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L +GA + +G+++RL T+AFLH I H+ VN SL +GP +E + G
Sbjct: 156 EMLGRALPYYGADHLVGVAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRA 215
Query: 209 RYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R+L +Y +A+ S SY F N+ ++GASGAIFGL G+ + ++R R +++
Sbjct: 216 RFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVR-------ADVR 268
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+++ N+ I I H+GGL+ G ++
Sbjct: 269 PFVALLVINLIITFGWSNIAWQAHIGGLVVGVLVA 303
>gi|384107096|ref|ZP_10007998.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
gi|383833031|gb|EID72500.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 95/188 (50%), Gaps = 21/188 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS- 301
L+G+ AV ++R R + VI N+ I + I GI WGH+GGL+ GAA +
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGHLGGLVAGAAATA 255
Query: 302 -WLLGPAL 308
L GP L
Sbjct: 256 GILYGPQL 263
>gi|388508254|gb|AFK42193.1| unknown [Lotus japonicus]
Length = 199
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I HL ++C++L S GP + K G + +Y ++ + S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFMIYILGGVSGNLTSFMH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG---I 285
PAVG +G +F ++G++ ++ +++R+++ E +II A+G ++ I
Sbjct: 63 TPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIII--TALGFILSSPGPI 120
Query: 286 DNWGHVGGLLGGAAISWLLGPALKYEFTSDDG 317
D W H G G A +L PAL+ + TS G
Sbjct: 121 DEWSHFGAAFTGMAYGFLTSPALQLDDTSGTG 152
>gi|319937466|ref|ZP_08011871.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
gi|319807306|gb|EFW03915.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
Length = 213
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 33/193 (17%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG---------------QFWRLATSA 178
T++L+A+ V++Y+ F LL+G ++N + +G +++RL T+
Sbjct: 15 TSVLIALCVVIYVISF------LLYGEEMN--VYEGMAFGGYNPVFVQLNHEYYRLITAN 66
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------CNS 231
F+H I H+ VNCYSL IG +E P++Y V F SA+A++ + Y N+
Sbjct: 67 FIHFGIIHIAVNCYSLYGIGMFIESSLKPKKYCIVLFISALATTGLPYLLYLINGFEANT 126
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ G SG IFGL+G+ +++R+I + + LA ++ + I +++ I GHV
Sbjct: 127 VSGGISGVIFGLIGALGALALKYRDIF---LDVFRQLAPNLLLMLFISVVVPSISLSGHV 183
Query: 292 GGLLGGAAISWLL 304
G++GG ++++
Sbjct: 184 AGMIGGFIATYII 196
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 97 ASSLSFFNGGGTRKNSGHEGTSHLDTARTN-----LFIGRQWTNILLAVNVLVYIAQFAT 151
++S+ F R SG T+ RT R T ILL +NV V+IA A
Sbjct: 50 SASVGFQCPECVRDGSGTGRTAQATAPRTVAGGALTADTRLVTKILLGINVAVFIAVLAV 109
Query: 152 QDKL-----LLWGAKINSLID-----KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
D L L+ GA + +G+++RL T+ FLH H++ N SL +GP +
Sbjct: 110 GDGLVQDLELIGGAFTREDLQFIGVAEGEWYRLLTAVFLHQAPMHIIFNMLSLWWLGPPL 169
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
E G R+L +Y S + SA+SY N P++GASGAIFGL+G+ V +MR N
Sbjct: 170 EAAFGRVRFLALYLLSGLGGSALSYLLAAQNQPSLGASGAIFGLLGA-TVILMRRLNY-- 226
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+++ + ++ N+ I HVGGL+ GAA+++
Sbjct: 227 ----DMRPVLILLALNLVFTFAWPDIAWQAHVGGLVMGAAVTY 265
>gi|397733720|ref|ZP_10500434.1| rhomboid family protein [Rhodococcus sp. JVH1]
gi|396930518|gb|EJI97713.1| rhomboid family protein [Rhodococcus sp. JVH1]
Length = 305
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 95/188 (50%), Gaps = 21/188 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS- 301
L+G+ AV ++R R + VI N+ I + I GI WGH+GGL+ GAA +
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGHLGGLVAGAAATA 255
Query: 302 -WLLGPAL 308
L GP L
Sbjct: 256 GILYGPQL 263
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 130 GRQWTNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
G T +L+ +NV ++I T L+ WGA L G +WR T F+H
Sbjct: 536 GNIATPLLIYINVALFIVMSICGVSLIEPTGISLMKWGADFGPLTLTGDWWRTVTCNFIH 595
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR-FCNSPAVGASGAI 240
I HL++N Y+L IG +E+I G R+ + Y + + S+ S + + GASG+I
Sbjct: 596 IGIIHLLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFSALASLTAHPETISAGASGSI 655
Query: 241 FGLVGSF-AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA- 298
FGL G F + I H+ K L + +I+N+ +G +GIDN H+GGL+ G
Sbjct: 656 FGLYGIFLSYLIFNHKIEKHQRKSLLFSIGFFVIYNLLLGTKEEGIDNAAHIGGLVSGVI 715
Query: 299 -AISWLLG 305
I++LL
Sbjct: 716 LGITYLLA 723
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+N+ ++I + ++LLL+G N LI G++WRL T FLH + HL+ N
Sbjct: 18 VTFLLALNIGIFILTWIPGIGNQLLLFGIGDNFLIANGEYWRLVTPMFLHGGLTHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA--VGASGAIFGLVGSFAV 249
+SL GP +EKI G R++ +Y + + +Y + +GASGAIFG+ G+F
Sbjct: 78 FSLFIFGPELEKIAGKARFITIYMLAGLFGDVATYFLQSGDYRHLGASGAIFGVFGAFGA 137
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ +++ + Q + +I+ ++ + + I+ H+ GL+ G I
Sbjct: 138 LVYYTKHVF---PQLKQVILPIIVISVVMTFVGTNINVTAHIAGLITGFLI 185
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L+ +N++VY+ + + +GA N LI G++WRL T+ F+H H++ N + L
Sbjct: 21 LILINLIVYVIGLVPRINSYIFNYGAAANWLIGAGEYWRLVTAIFIHGGFLHILSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIM 252
GP +EKI G R++ ++ S I + +Y + +VGASGA+FG++G++ +
Sbjct: 81 YVFGPELEKIAGRARFIFIFLMSGIIGNVATYFVQDLGYVSVGASGAVFGMLGAYLALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
R+I + Q + ++I ++ I L ++ H+ GL+ GA I ++
Sbjct: 141 YTRHIF---PQLRQMILPLVIISVIITFLQPNVNATAHIAGLITGAVIGFI 188
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLL--WGAKINSL-IDKGQFWRLATSAFLHANI 184
T ILLA + +VY+ + D +L GA L + KG++WRL T+ FLH +
Sbjct: 11 TYILLASSSVVYLFSALLSQSLSDMDMQVLVDMGALFGPLTVLKGEWWRLLTAMFLHGGM 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
HL++N +SL +G E + YL +YF S I +S Y S VGASGAIFG+
Sbjct: 71 THLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGGLVSLYIHPVSVGVGASGAIFGV 130
Query: 244 VGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ A F + HR I K ++ + +I N+ IG I ID H+GGL+ G
Sbjct: 131 FGALAGFFLAHREKIASHTKAFMKDFSIIIAINLVIGFSIPSIDVSAHIGGLIVG 185
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 24/208 (11%)
Query: 131 RQWTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R T+ L+ +NVL++I + F+ +L+GA++ +LI G+++RL TS F+H
Sbjct: 3 RNVTSYLIMLNVLIFIMMFLFGGLSAFSNPRIYILFGAQLGNLITAGEWFRLITSMFVHG 62
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ N +L +G +E+ G R++ +Y S I + +++ F N+ +VGASGAIF
Sbjct: 63 GLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLPNAISVGASGAIF 122
Query: 242 GLVGSFAVFIMRH------RNILGGGKEELQHLAKVIIFNMAIGLLIKG-IDNWGHVGGL 294
GL+G RH R + G L +I+ N+ G L I+N+ H+GGL
Sbjct: 123 GLIGLLFGAGFRHDTPTILRPVTG------TALLPIILINVIWGFLPGANINNFAHLGGL 176
Query: 295 LGGAAISWLLGPALKYEFTSDDGFRIFS 322
G WL +++Y S G+R FS
Sbjct: 177 GIGFTFGWL--TSIRYTKRSYQGWRTFS 202
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 24/175 (13%)
Query: 136 ILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+L+ + V+ YI + Q+ L+ +GAK N I +G++WR +S FLH HL
Sbjct: 189 LLIMIAVMFYIVE---QNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGFIHLF 245
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L +G +E++ G R++ +YF + + S S+ F A GASGAIFGL G+
Sbjct: 246 MNSLALFYLGGAVERMYGTSRFVLIYFIAGLIGSISSFAFNEQVAAGASGAIFGLFGALL 305
Query: 249 VFIMRHRNILGGGKEEL------QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F G + +L ++ ++ N+ G ++ IDN H+GGL+GG
Sbjct: 306 YF--------GTAQPKLFFRTMGMNVLVILGINLVFGFVMPMIDNGAHIGGLVGG 352
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+++N LV++ Q + +L LW + S GQ +RL TSAFLH HL++N
Sbjct: 3 TYTLISLNALVFVMQVTVMGLERQLALWPPAVAS----GQTYRLVTSAFLHYGAMHLLLN 58
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 59 MWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFG--A 116
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
F++ R L +++ + +I+ N+A L I GHVGGL+ GA ++
Sbjct: 117 TFMVARRLHL-----DVRWVVALIVINLAFTFLAPAISWQGHVGGLVTGALVA 164
>gi|432333562|ref|ZP_19585328.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
gi|430779509|gb|ELB94666.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
Length = 249
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 95/188 (50%), Gaps = 21/188 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+AVNV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 28 TYILMAVNVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 86
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF S + SA F + GASGA+FG
Sbjct: 87 IIHLAVNMFALWVIGRDTELVLGRARYACVYFVSLLGGSAAVMLFQLGAVTAGASGAVFG 146
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS- 301
L+G+ AV ++R R + VI N+ I + I GI WGH+GGL+ GAA +
Sbjct: 147 LMGAQAVILLRLR-------RSPAPVISVIAVNVIISITIPGISLWGHLGGLVAGAAATA 199
Query: 302 -WLLGPAL 308
L GP L
Sbjct: 200 GILYGPQL 207
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 22/186 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 32 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 91
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 92 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 151
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
ASGAIFGL G+ + ++R R +++ +++ N+ I I H+GGL+
Sbjct: 152 ASGAIFGLFGATGILVLRVR-------ADVRPFVALLVINLIITFGWSNIAWQAHIGGLV 204
Query: 296 GGAAIS 301
G ++
Sbjct: 205 VGVLVA 210
>gi|418251560|ref|ZP_12877691.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|420934166|ref|ZP_15397439.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|420935691|ref|ZP_15398961.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|420944426|ref|ZP_15407681.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|420949678|ref|ZP_15412927.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|420954531|ref|ZP_15417773.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|420958705|ref|ZP_15421939.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
gi|420963609|ref|ZP_15426833.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|420994639|ref|ZP_15457785.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|420995600|ref|ZP_15458743.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|421004948|ref|ZP_15468070.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|353448717|gb|EHB97118.1| rhomboid family protein [Mycobacterium abscessus 47J26]
gi|392132578|gb|EIU58323.1| rhomboid family protein [Mycobacterium massiliense 1S-151-0930]
gi|392146032|gb|EIU71756.1| rhomboid family protein [Mycobacterium massiliense 1S-153-0915]
gi|392147198|gb|EIU72919.1| rhomboid family protein [Mycobacterium massiliense 1S-152-0914]
gi|392150719|gb|EIU76432.1| rhomboid family protein [Mycobacterium massiliense 1S-154-0310]
gi|392153444|gb|EIU79151.1| rhomboid family protein [Mycobacterium massiliense 2B-0626]
gi|392180741|gb|EIV06393.1| rhomboid family protein [Mycobacterium massiliense 2B-0307]
gi|392191420|gb|EIV17045.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-R]
gi|392193651|gb|EIV19275.1| rhomboid family protein [Mycobacterium massiliense 2B-0912-S]
gi|392246522|gb|EIV71999.1| rhomboid family protein [Mycobacterium massiliense 2B-1231]
gi|392248431|gb|EIV73907.1| rhomboid family protein [Mycobacterium massiliense 2B-0107]
Length = 232
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 11 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 70
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 71 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 130
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 131 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 179
>gi|418423189|ref|ZP_12996358.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
gi|363993164|gb|EHM14390.1| rhomboid family protein [Mycobacterium abscessus subsp. bolletii
BD]
Length = 252
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATLSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 199
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 134 TNILLAVNVLVYI-AQFA----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+ +L+ +NV++++ FA + L +GA LI +G+ WRL FLH + HL+
Sbjct: 35 SYVLIGINVVMFLLTAFAGGSTDPEVLTAFGACNRKLIAQGELWRLVVPMFLHIGVIHLV 94
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N Y+L +GP +E + G R+ +Y S I SY F + ++ GASGA+FG+ G+
Sbjct: 95 ANMYALWVVGPQLESLYGSARFTILYVLSGIGGFVASYFFAHPESIGAGASGALFGMFGA 154
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVII---------FNMAIGLLIKGIDNWGHVGGLLGG 297
VF+ ++R+ E+ L + + N+ I I I GHVGGLL G
Sbjct: 155 LLVFVYKYRS-------EIPPLVRATMRRGVWLTLALNLIITFSIPFISRSGHVGGLLTG 207
Query: 298 AAIS 301
++
Sbjct: 208 ICLA 211
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 95/178 (53%), Gaps = 15/178 (8%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG IN I +GQ+WRL TS FLHA + H++ N ++L GP +E++ G +++ Y +
Sbjct: 47 WGMGINFAISQGQYWRLITSIFLHAGLMHVLFNSFALVLFGPALEQMLGKVKFITAYLGA 106
Query: 218 AIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ + + F PA VGASGAI+GL G +A + ++++ ++ + +++
Sbjct: 107 GLIGNLAT--FLLGPALYSHVGASGAIYGLFGIYAFMVAFRKHLIDPSSSQI--ITIILV 162
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL-------GPALKYEFTSDDGFRIFSDR 324
+ + + GI+ + HV G +GG A++ L+ P L+ ++ D + +R
Sbjct: 163 IGLIMTFVRSGINIYAHVFGFIGGFALAPLILNNVRPYSPWLRRQYVDDGSVQFDPNR 220
>gi|312870529|ref|ZP_07730647.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
gi|311093926|gb|EFQ52252.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
Length = 215
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V++Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVTLVAIQVIIYLLMTLAGGSTNPAVLLRFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLIIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ R + L+ L++ +++ N+ L++ GID GH+GG +GG +++L
Sbjct: 128 IMLGASFRE-----NQALRMLSRQFLILVVLNIVTDLMVPGIDLAGHLGGFIGGFLLAYL 182
Query: 304 LG 305
+G
Sbjct: 183 VG 184
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL--------LLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A NVL+++A L L WGA G++WRL ++ FLH I
Sbjct: 18 TPLLIAANVLIFVAMLLNGASLWHAQNTIQLAWGANFGPATQDGEWWRLGSALFLHFGIL 77
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGL 243
HL++N +L +G +E++ G R+ +Y ++ + + +S AV GASGAIFG+
Sbjct: 78 HLLLNMAALWDVGQWVERMYGTLRFAVIYLTAGLTGNLLSLVANAGAAVSGGASGAIFGI 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKV------IIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ ++ R+ + G+ A + IIF GLL+ GIDN HVGG + G
Sbjct: 138 YGALLSYLWLERSSIHRGEFRWLFWAAIGFSGATIIF----GLLVPGIDNAAHVGGWIAG 193
Query: 298 AAISWLL 304
+ LL
Sbjct: 194 VLMGVLL 200
>gi|149199790|ref|ZP_01876820.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
gi|149137078|gb|EDM25501.1| Rhomboid-like protein [Lentisphaera araneosa HTCC2155]
Length = 454
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 19/173 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ----------DKLLLWGA-KINSLIDKGQFWRLATSAFLHA 182
T +++A+N++V+ + + D + WG+ +I ID+ WRL T AF+H
Sbjct: 115 TTVIIALNIIVFFLMYGIEKLNIIQPKNLDVFIQWGSNRIFETIDEP--WRLFTCAFIHF 172
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGA 239
+ H+ N Y L++IG EK+ GPR Y +Y SA S S + NS V GASGA
Sbjct: 173 GLLHIACNMYFLHAIGRLSEKLLGPRFYFIIYIFSAFTGSLASLLW-NSDGVISAGASGA 231
Query: 240 IFGLVGSFAVF-IMRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGH 290
+FG+VG F +MR ++ + L++ + ++++ N G L+ GIDN H
Sbjct: 232 VFGVVGMVGAFLVMRRDDVPPTAFKNLKNSMVQIVVLNFLFGTLVPGIDNAAH 284
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF--IMRHRNILG 259
+ G R + +YF SA+ + S F S + GAS AIFGL G+F + RH I+
Sbjct: 86 EFFGHWRMVVIYFVSALFGNFTSAVFMPSTISAGASTAIFGLFGAFLMLGVCFRHNVIV- 144
Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG-PALK 309
+ + +I N+ + + G+D GH+GGL GG I++++G P L+
Sbjct: 145 --RVLSRTFLLFVIINIVMDFFLSGVDLIGHIGGLFGGFFIAFIVGAPMLE 193
>gi|160878203|ref|YP_001557171.1| rhomboid family protein [Clostridium phytofermentans ISDg]
gi|160426869|gb|ABX40432.1| Rhomboid family protein [Clostridium phytofermentans ISDg]
Length = 396
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 16/182 (8%)
Query: 134 TNILLAVNVLV--YIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVN 190
T +L+A+N +V Y +K++ G LI +++RL T FLHANI+HL+ N
Sbjct: 209 TLVLIALNAVVFFYTDLSGNYNKIISEGCIFWPLIKFNNEYYRLLTYQFLHANISHLVNN 268
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCN---SPAVGASGAIFGLVG 245
L +G T+E+ G +YL +YF S I + ++MSY S ++GASGA+FG++G
Sbjct: 269 MLILAIMGSTLERHVGKFKYLLIYFLSGIVAGIASMSYNMWKGLFSNSIGASGAVFGVIG 328
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF---NMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+ A+ ++ ++ G+ E ++IIF ++ G +G+DN HVGGLL G I+
Sbjct: 329 AIALIVVVNK-----GRLETIGTRQIIIFIALSLYGGFTSQGVDNAAHVGGLLAGFFIAM 383
Query: 303 LL 304
L+
Sbjct: 384 LV 385
>gi|365872871|ref|ZP_09412407.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363992937|gb|EHM14164.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
Length = 252
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 199
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 16/200 (8%)
Query: 132 QWTNILLAVNVLVY--IAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+ +L+A+N+++Y ++ + L+ +G N I G+ WR+ T FLH +I HL
Sbjct: 16 KLVTVLIAINLVIYFWMSMYPKLGGQLIEAYGVGSNYHIAMGELWRIVTPIFLHGSIMHL 75
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGL 243
+ NC+SL GP +EK+ G + L YF++ I ++ + F +P +GASGAI+GL
Sbjct: 76 LFNCFSLFLFGPALEKMLGKGKLLIAYFATGILANIAT--FILAPLFYFHLGASGAIYGL 133
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G + ++ ++++ +L +I M + GI+ + H+ GL+ GAA
Sbjct: 134 FGIYLYMVLVRKDLIDPRNAQLIITILIIGVIMT--FINPGINRYAHIFGLISGAA---- 187
Query: 304 LGPALKYEFTSDDGFRIFSD 323
L P L + TS + + SD
Sbjct: 188 LAPILLRKITSASLYSMASD 207
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T FIG ++L VL + L+ WG K N LI G++WRL T FLH
Sbjct: 185 TYTFIGL----LVLMFLVLTFTGGSTNSFNLIKWGGKFNPLIYAGEWWRLITPMFLHNGW 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ N L +GP EKI G R+ + A + S+ N +VGAS ++F +
Sbjct: 241 MHIAANAVMLYIVGPWAEKIYGKWRFALILLIGGFAGNLASFVLNNHLSVGASTSVFAVF 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G+ ++ N+ K ++A +++ N+ IGL ID GH+GGL+GG I+
Sbjct: 301 GALLYLVVLKPNLY--AKTIGTNVATLVVVNILIGLFSAEIDMMGHIGGLVGGFLIA 355
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 22/186 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDK-------------LLLWGAKINSLIDKGQFWRLATS 177
R +T IL+A+N+ V++ A D+ L +GA + +G+++RL T+
Sbjct: 125 RLFTKILIALNLAVFLLVQAVPDQQRLLDDLEMLGRALPYYGADHLVGVAEGEWYRLLTA 184
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVG 235
AFLH I H+ VN SL +GP +E + G R+L +Y +A+ S SY F N+ ++G
Sbjct: 185 AFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAAPNAASLG 244
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
ASGAIFGL G+ + ++R R +++ +++ N+ I I H+GGL+
Sbjct: 245 ASGAIFGLFGATGILVLRVR-------ADVRPFVALLVINLIITFGWSNIAWQAHIGGLV 297
Query: 296 GGAAIS 301
G ++
Sbjct: 298 VGVLVA 303
>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa]
gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++DK Q WRL T +LHA I HL+ N SL IG +E+ G R VY S S +
Sbjct: 113 VVDKHQGWRLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVL 172
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 173 SSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALLTLLVIIVINLAIGIL-P 231
Query: 284 GIDNWGHVGGLLGGAAISWLLGPALKY 310
+DN+ H+GG L G + ++L P +Y
Sbjct: 232 HVDNFAHIGGFLSGFLLGFVLLPRPQY 258
>gi|414584256|ref|ZP_11441396.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|420881430|ref|ZP_15344797.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|420884483|ref|ZP_15347843.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|420887277|ref|ZP_15350635.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|420896232|ref|ZP_15359571.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|420901413|ref|ZP_15364744.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|420907312|ref|ZP_15370630.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|420974770|ref|ZP_15437960.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|421052000|ref|ZP_15514994.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392080246|gb|EIU06072.1| rhomboid family protein [Mycobacterium abscessus 5S-0421]
gi|392086339|gb|EIU12164.1| rhomboid family protein [Mycobacterium abscessus 5S-0304]
gi|392093991|gb|EIU19787.1| rhomboid family protein [Mycobacterium abscessus 5S-0422]
gi|392095544|gb|EIU21339.1| rhomboid family protein [Mycobacterium abscessus 5S-0708]
gi|392098774|gb|EIU24568.1| rhomboid family protein [Mycobacterium abscessus 5S-0817]
gi|392105216|gb|EIU31002.1| rhomboid family protein [Mycobacterium abscessus 5S-1212]
gi|392119408|gb|EIU45176.1| rhomboid family protein [Mycobacterium abscessus 5S-1215]
gi|392159888|gb|EIU85581.1| rhomboid family protein [Mycobacterium abscessus 5S-0921]
gi|392240603|gb|EIV66096.1| rhomboid family protein [Mycobacterium massiliense CCUG 48898]
Length = 247
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 194
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +N+ VY F + +L++G + +G F+ T+ FLH N+
Sbjct: 10 TIILIIINLAVYFFVFILSHSRRTIDLYNLILIYGGISRGALLRGLFYTPLTALFLHGNM 69
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H++ N Y+L +G +E I G R++L YF S I + + +G+S AIFGLV
Sbjct: 70 LHILFNMYALFQLGYLVEGIYGMRKFLIFYFVSGIIGNLTAATMTPYITIGSSSAIFGLV 129
Query: 245 GS-FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G FA+ + ++ L L +I+ N+ GL+I I N HVGGL+ G+ + W
Sbjct: 130 GVLFALGFKKDTPVVLKSVTGLS-LLPIILLNLMFGLMIPNISNSAHVGGLIAGSLLGWF 188
Query: 304 LGP 306
+ P
Sbjct: 189 VLP 191
>gi|420866475|ref|ZP_15329864.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|420871266|ref|ZP_15334648.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|420875716|ref|ZP_15339092.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|420988850|ref|ZP_15452006.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|421040347|ref|ZP_15503355.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|421046065|ref|ZP_15509065.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
gi|392065191|gb|EIT91040.1| rhomboid family protein [Mycobacterium abscessus 4S-0303]
gi|392067191|gb|EIT93039.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RB]
gi|392070736|gb|EIT96583.1| rhomboid family protein [Mycobacterium abscessus 4S-0726-RA]
gi|392183129|gb|EIV08780.1| rhomboid family protein [Mycobacterium abscessus 4S-0206]
gi|392221275|gb|EIV46798.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-R]
gi|392235518|gb|EIV61016.1| rhomboid family protein [Mycobacterium abscessus 4S-0116-S]
Length = 247
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 194
>gi|421036084|ref|ZP_15499101.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
gi|392219936|gb|EIV45460.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-S]
Length = 252
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 31 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 90
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 91 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 150
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 151 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 199
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKIN-----SLIDKGQFWRLATSAFL 180
R T +L+ VN+ +++ Q + D+ LL A I + +GQ++RL T+ FL
Sbjct: 84 RLVTKVLIGVNLALFLVQLSVGDRFTQRFELLGQAYITFPGPVEGVAEGQWYRLLTAMFL 143
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H++ N SL +G +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 144 HTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGSALTYLIAEPNQPSLGASG 203
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFGL G+ A + R +++ + ++ N+ I HVGGL+ GA
Sbjct: 204 AIFGLFGATATLVRRL-------NADMRPVVILLAINLVFTFTWANIAWQAHVGGLVAGA 256
Query: 299 AISWLL 304
I + +
Sbjct: 257 VIGYAM 262
>gi|297205734|ref|ZP_06923129.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
gi|297148860|gb|EFH29158.1| S54 family peptidase [Lactobacillus jensenii JV-V16]
Length = 229
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 21/188 (11%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHAN 183
TN + +V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH
Sbjct: 12 TNAMTNTIFVVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
+ HL+VNC +L +G +E + G R+L +Y + + + M+ F + AV GAS A+F
Sbjct: 72 LLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLAFGSDNAVSAGASTALF 131
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL G+ + +R E + +L + + + N+ + + ID WGHVGGL+ G
Sbjct: 132 GLFGAMIALGIANRT-----HEGMAYLGRQSFVLAVINLLFDINVPQIDTWGHVGGLIAG 186
Query: 298 AAISWLLG 305
++ +LG
Sbjct: 187 FLLTVILG 194
>gi|419710435|ref|ZP_14237901.1| rhomboid family protein [Mycobacterium abscessus M93]
gi|382941267|gb|EIC65587.1| rhomboid family protein [Mycobacterium abscessus M93]
Length = 247
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAEGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 194
>gi|417886300|ref|ZP_12530447.1| peptidase, S54 family [Lactobacillus oris F0423]
gi|341593798|gb|EGS36623.1| peptidase, S54 family [Lactobacillus oris F0423]
Length = 215
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 15/182 (8%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+A+ V +Y+ A +T +LL +GA ++ + G++WRL T F+H AHL+
Sbjct: 8 TVALIAIQVTIYLLMTLAGGSTNPAVLLQFGALQSAALQAGEWWRLITPVFVHIGFAHLL 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSF 247
+N +L IG +E++ G R L +Y SA+ + MS Y + GAS IFGL G+F
Sbjct: 68 INSITLYFIGMYIEQLFGHWRLLVIYLGSAVVGNLMSAYWLPAGISAGASTGIFGLFGAF 127
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ R + L+ L++ +++ N+ L++ GID GH+GG +GG +++L
Sbjct: 128 IMLGASFRE-----NQALRMLSRQFLILVVLNIVTDLMVPGIDLAGHLGGFIGGFLLAYL 182
Query: 304 LG 305
+G
Sbjct: 183 VG 184
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + +G++WRL T FLH +I HL+ N ++L GP +E++ G ++L VY S
Sbjct: 45 GVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFALVIFGPALERMLGKGKFLFVYLLSG 104
Query: 219 IASSAMSYRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ +Y +GASGAIFGL G F ++ ++++ +L + +II
Sbjct: 105 FIANVATYYLGGLAYPYHLGASGAIFGLFGIFVYMVIYRKDLIDPANTQL--VITIIIIG 162
Query: 276 MAIGLLIKGIDNWGHVGGLLGGAAISWLL----GPALKYEFTSDD 316
+ + L I+ + H+ G++GGAA++ ++ P + +DD
Sbjct: 163 LVMTFLSSNINVFAHLFGMIGGAALAPIVLAKARPFYAFAVAADD 207
>gi|420912660|ref|ZP_15375972.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|420919114|ref|ZP_15382417.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|420924284|ref|ZP_15387580.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|420929944|ref|ZP_15393223.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|420969638|ref|ZP_15432841.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
gi|420980281|ref|ZP_15443458.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|420985667|ref|ZP_15448834.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|421009768|ref|ZP_15472877.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|421010496|ref|ZP_15473600.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|421020930|ref|ZP_15483986.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|421025708|ref|ZP_15488751.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|421031230|ref|ZP_15494260.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392112005|gb|EIU37775.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-S]
gi|392114654|gb|EIU40423.1| rhomboid family protein [Mycobacterium abscessus 6G-0125-R]
gi|392126932|gb|EIU52683.1| rhomboid family protein [Mycobacterium abscessus 6G-1108]
gi|392128937|gb|EIU54687.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-S]
gi|392164559|gb|EIU90248.1| rhomboid family protein [Mycobacterium abscessus 6G-0212]
gi|392170663|gb|EIU96341.1| rhomboid family protein [Mycobacterium abscessus 6G-0728-R]
gi|392195374|gb|EIV20993.1| rhomboid family protein [Mycobacterium abscessus 3A-0119-R]
gi|392206653|gb|EIV32236.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-S]
gi|392209231|gb|EIV34803.1| rhomboid family protein [Mycobacterium abscessus 3A-0731]
gi|392216607|gb|EIV42150.1| rhomboid family protein [Mycobacterium abscessus 3A-0122-R]
gi|392219112|gb|EIV44637.1| rhomboid family protein [Mycobacterium abscessus 3A-0930-R]
gi|392245294|gb|EIV70772.1| rhomboid family protein [Mycobacterium abscessus 3A-0810-R]
Length = 247
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 26 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 85
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 86 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 145
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 146 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 194
>gi|302805494|ref|XP_002984498.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
gi|300147886|gb|EFJ14548.1| hypothetical protein SELMODRAFT_445901 [Selaginella moellendorffii]
Length = 459
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 130 GRQWTNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
G + ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+
Sbjct: 223 GSIVVSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHS 282
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFG 242
+ HL ++C++ S GP +E + G + +Y + S+ + P VG +GA+F
Sbjct: 283 GLLHLFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFA 342
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG---IDNWGHVGGLLGGAA 299
++ S+ +F+++++ + + + L KV++ + + +L+ +D W HVGG L G
Sbjct: 343 MICSWIIFLVKNKEAV-RTFDTGELLQKVLVLS-GLTVLVGNELPVDAWTHVGGALVGIL 400
Query: 300 ISWLLGPALKYEFTS 314
+ P Y+ TS
Sbjct: 401 FGAVASPW--YQITS 413
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 20/184 (10%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T LL +NVLV+I + L+ +GAK+N+LI GQ+WRL T FLH H++
Sbjct: 8 TYTLLGINVLVFILMTLAGGSQSVGVLVEFGAKVNTLIVAGQWWRLITPMFLHIGFEHIV 67
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L VY S IA + S+ F ++ + GAS A+FGL F
Sbjct: 68 LNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNLASFAFNPDALSAGASTALFGL---F 124
Query: 248 AVFIMRHRN------ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+++M + I G++ L +++ N+ G +D GH+GGL+GG +
Sbjct: 125 GIYLMMGESFSSNPYIRAMGRQFLL----LVVLNIMFGFY-GSVDLAGHIGGLVGGFLMG 179
Query: 302 WLLG 305
+ +G
Sbjct: 180 YCVG 183
>gi|397678270|ref|YP_006519805.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
gi|395456535|gb|AFN62198.1| Rhomboid protease gluP [Mycobacterium massiliense str. GO 06]
Length = 287
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVDGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 186 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 234
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 158 WGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA + L+ + ++WR FLH H+++N +L IG +E I G RYLG+Y
Sbjct: 26 WGAMVRPLVAQNHEYWRFINPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLL 85
Query: 217 SAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
S IA + S+ F NS + GAS A+FGL G+F V + RH +Q + I+
Sbjct: 86 SGIAGNIASFAFGTPNSVSAGASTALFGLFGAF-VILGRHFRDNPAIMYMVQRYSMFIVI 144
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAIS 301
N+ L +D GHVGGL+GG ++
Sbjct: 145 NLLFNLFSSSVDMMGHVGGLIGGLLVA 171
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFAT----QDKLLL--- 157
G GT H +A + R T IL+ VN+L+++ Q A +D+ L
Sbjct: 56 GGSGTGHAPSASAPRTLAGGTVAADPRLLTKILIGVNLLLFLVQQAVGDTFEDRFDLIGR 115
Query: 158 -WGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
W ++ S + +GQ++RL TS FLH ++ H++ N SL IG +E G RYL +
Sbjct: 116 AWDPELGSSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTL 175
Query: 214 YFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHR 255
YF S +A SA++Y N P++GASGAIFGL G+ V + R R
Sbjct: 176 YFVSGLAGSALTYLLAAPNQPSLGASGAIFGLFGATGVLMRRLR 219
>gi|169627133|ref|YP_001700782.1| rhomboid family protein [Mycobacterium abscessus ATCC 19977]
gi|169239100|emb|CAM60128.1| Rhomboid family protein [Mycobacterium abscessus]
Length = 287
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 131 RQW-TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W T L+AVNVLVY A + T +L + +G+ WR T+ FLH
Sbjct: 66 RAWITWALIAVNVLVYTATVSDGVGGDVTGSQLFRELVLYLPWVAQGELWRTVTTGFLHL 125
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
+ H+ VN SL IGP +E+ G +RY +Y ++ + SSA + N+ GASGAI+
Sbjct: 126 GLMHIAVNMLSLAMIGPGLERAFGGQRYAAIYGTALLGSSAAAMWLSPNAVVAGASGAIY 185
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G+ V +R R Q + V++ N+ + + + GI GH+GGLL G
Sbjct: 186 GLLGAALVLSLRER-------LNPQTIIIVLLLNIGLSISLPGISLAGHMGGLLFG 234
>gi|256850860|ref|ZP_05556249.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260661071|ref|ZP_05861985.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
gi|256615922|gb|EEU21110.1| membrane-associated serine protease [Lactobacillus jensenii
27-2-CHN]
gi|260548008|gb|EEX23984.1| membrane-associated serine protease [Lactobacillus jensenii
115-3-CHN]
Length = 215
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 143 LVYIAQFA-------TQDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+V +A FA ++D +L+ GA+ N ++I GQ+WRL T+ FLH + HL+VNC
Sbjct: 7 VVLVAMFALETFNGGSEDSAVLFKLGAQFNPAVIILGQWWRLFTAQFLHIGLLHLVVNCV 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVF 250
+L +G +E + G R+L +Y + + + M+ F + AV GAS A+FGL G+
Sbjct: 67 TLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTMAFGSDNAVSAGASTALFGLFGAMIAL 126
Query: 251 IMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R E + +L + + + N+ + + ID WGHVGGL+ G ++ +LG
Sbjct: 127 GIANRT-----HEGMAYLGRQSFVLAVINLLFDINVPQIDTWGHVGGLIAGFLLTVILG 180
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+L+ QF LL +G +N LI +G++WRL T FLHA AH + N +SL GP +
Sbjct: 30 ILIDFLQFGFALDLLRFGIGVNVLILEGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPAL 89
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNI 257
E+I G +++ +Y + I + ++ N A +GASGAIFG+ G + ++ +++
Sbjct: 90 EQILGKFKFIFMYLFAGIVGNLGTF-IVNPDAYYQHLGASGAIFGIFGVYVFMVLFRKHL 148
Query: 258 LGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ ++ + + I + + I+ GH+ GL+GG AI+
Sbjct: 149 IDQANSQI--VMVIFILGLFMTFTRPNINVLGHLFGLIGGFAIA 190
>gi|238922477|ref|YP_002935990.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
gi|238874149|gb|ACR73856.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
Length = 192
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I GQ+WRL TS F+H + H++ N L ++G +EK G + L + S
Sbjct: 32 GAMYPEYIKDGQYWRLFTSMFMHFGLMHILNNMVVLGAVGQIVEKAMGHVKLLITFLVSG 91
Query: 219 IASSAMSY---RFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ S +SY + N AV GASGAIFGLVG+ ++ +R G + ++I
Sbjct: 92 MCGSVLSYIVMLYNNDYAVSAGASGAIFGLVGALVWIVIANRGFYEGVSR--KQAVFMVI 149
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ G+ +G+DNW H GGL+GG IS +L
Sbjct: 150 LMIYYGVSTQGVDNWAHGGGLVGGFVISIVL 180
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 22/184 (11%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLL------WGAKINSLIDKGQFWRLATSAFLHANIA 185
+L + VL++I + T D LL WG I D +WRL T FLHA
Sbjct: 18 ILTLTVLIFILELVIGGGQTDDGQLLVVLGAKWGPYIKLHHD---YWRLVTPLFLHAGFM 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H+ N +L IGP +E G R++L +Y S + + SY F + +VGAS A+FGL
Sbjct: 75 HVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYLFAPLTVSVGASSALFGLF 134
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G ++ ++ ++ I G + +A N+ G GID WGH+GGL+GG +
Sbjct: 135 GGMILYAIQFKDDPRIRSQGTVMIMFVA----LNLVTGFATTGIDMWGHIGGLVGGMIFT 190
Query: 302 WLLG 305
++G
Sbjct: 191 IIVG 194
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQ------HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
G ++ +R KE+ Q L +I N+ G ID WGH+GGL+GG
Sbjct: 134 GGLILYAIRF-------KEDPQVKSMGTMLGLFVILNLVTGFSSTDIDIWGHIGGLIGGM 186
Query: 299 AISWLLG 305
+ + G
Sbjct: 187 MFAVMFG 193
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
Query: 143 LVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
LVY LL GA+ LI +G++WRL + FLH ++HL+VN +L IG +E
Sbjct: 26 LVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYIGRYIE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVF-IMRHRNILGG 260
+ G R + +YF SA + S F S + GAS AIFGL G+F + + H N++
Sbjct: 86 EFFGHWRMVIIYFVSAFFGNLTSAVFMPSTVSAGASTAIFGLFGAFLMLGVCFHHNVI-- 143
Query: 261 GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
+ + +I N+ + + G+D GH+GGL GG I++++G +
Sbjct: 144 VRVLSRTFLLFVIINIVMDFFLSGVDLVGHIGGLFGGFFIAFIVGAPM 191
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q++R +AFLH N H++VN Y+L +G +E + G R +G++ + A+ + +SY
Sbjct: 42 QYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLFLAGAVGGNVLSYVVN 101
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
+ ++GAS AIFG G+F V R R + + +I+ N AI + ID
Sbjct: 102 GLETSSLGASTAIFGFFGAFYVIARRMR-------ADTTQILILIVLNFAITFSLSSIDR 154
Query: 288 WGHVGGLLGGAAI 300
WGH+GGL+ G +
Sbjct: 155 WGHIGGLVAGTIV 167
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNLTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L +NV V++ A + L+ +GAK N ID+G++WR T FLH HL
Sbjct: 199 TFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLHLW 258
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
N +L S+G +E+ G R+ Y + IA + SY F S + GASGAIFGL+G
Sbjct: 259 FNSTALLSLGGRLERGIGSLRFALFYLLAGIAGNIASYTFSPSISAGASGAIFGLMGVLL 318
Query: 249 VFIMRHRNILG--GGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V + ++ G GG L N+ +G ++ GIDN+ H
Sbjct: 319 VLSIMDPDLWGESGGMAIWGGLG----MNVVLGFIVPGIDNYAH 358
>gi|159485784|ref|XP_001700924.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158281423|gb|EDP07178.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 440
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
RQ TN+ LA+NV Y+ T ++L A I + +G++ RL T+ FLH + HL+ N
Sbjct: 233 RQVTNLFLAINVATYLVAR-TDRSVVLAMAAIPHEVARGEWHRLLTAGFLHTDFLHLLSN 291
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
+L+ +GP +E G R+ +Y S +A SA Y + V GASG + GL ++
Sbjct: 292 MLALHWLGPDLESAAGRGRFAAIYLLSVVAGSAAQYAWGGWGTVSWGASGGVAGLFAAYV 351
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
+ +R+RN G ++ +A+V+ N+ + ++ G
Sbjct: 352 TYRLRNRNYTGWSSADMSWVAQVVGLNVVLSMVAGG 387
>gi|56963491|ref|YP_175222.1| hypothetical protein ABC1726 [Bacillus clausii KSM-K16]
gi|56909734|dbj|BAD64261.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 523
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQ------DKLLLWGAKINSLIDKGQFWRLATS 177
R LF G+ L +++L+ + + L+ +GAK N LI +G++WRL ++
Sbjct: 174 RQTLFFGKPRVIYALLISILIMFSVLEANGGSTNIETLIDFGAKYNPLIVEGEWWRLFSA 233
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
FLH HL +N +L +G +E++ G R+L +YF + + SA+S+ F +S + GAS
Sbjct: 234 MFLHIGFFHLFMNGMALYFLGSAVEQLFGSIRFLVIYFMAGLFGSAVSFAFTDSLSAGAS 293
Query: 238 GAIFGLVGSFAVFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGID 286
GA+FG G+ F ++ ++ LG + + ++I N +G ++ GID
Sbjct: 294 GALFGCFGALLYFGIKQPSLFFRTLG------RSVIVLLIINFFLGFIVPGID 340
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 134 TNILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIA 185
T I+ V V++ + + L+ GAK I K ++WRL T FLHA
Sbjct: 14 TTIIFLVTTFVFLIELVLSRGTTENSEFLINMGAKWGPYIQLKHEYWRLLTPVFLHAGFL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N +L IGP +E+ G ++ G+YF I + SY +S +VGAS A+F +
Sbjct: 74 HIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGNIFSYLLAPSSVSVGASTALFAMF 133
Query: 245 GSFAVFIMRHRNILGGGKEELQ------HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
G ++ +R KE+ Q L +I N+ G ID WGH+GGL+GG
Sbjct: 134 GGLILYAIRF-------KEDPQVKSMGTMLGLFVILNLVTGFSSTDIDIWGHIGGLIGGM 186
Query: 299 AISWLLG 305
+ + G
Sbjct: 187 MFAVMFG 193
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
+L +V ++ ++ + + L A IN I G++WRL T F+H AHL+ N +SL
Sbjct: 38 LLFSVALVPFLPEILVYEHL----AGINLYIFNGEWWRLITPIFVHLGFAHLLFNSFSLI 93
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMR 253
P +E++ G ++ +Y + IA++ +Y + VGASGAIFGL G + +
Sbjct: 94 LFAPPLERMLGKFKFTIIYLTCGIAANIATYFLKPLTYNHVGASGAIFGLFGIYVGMTLF 153
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
H++++ + Q + +++ + + I+ H+ GLL G ISWLL P +
Sbjct: 154 HKHLISTQNK--QVIIPIVVIGLVMTFFQANINITAHLVGLLSGLVISWLLLPYM 206
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 19/177 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW +L +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLQIAGGDLESRLTLWP---PALALHDEYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKGIDNW-GHVGGLLGGAAIS 301
V + RH N+ +++ + +++ N+ +G + +W GH+GGL+ GA ++
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINLVFTFVGPALGTAISWQGHIGGLVTGALVA 206
>gi|268637931|ref|XP_002649151.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|256012943|gb|EEU04099.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 489
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GAK + LI G++WR T FLH I H ++N + +G +E+ G R + +Y
Sbjct: 277 LLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIY 336
Query: 215 FSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+A + S NS VGASGAIFG +G ++R+ ++L L II
Sbjct: 337 LLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSVLAKPWLNFGSLLFSII 396
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
+ A+GL + G+DN+ H+GG + G + + P+L
Sbjct: 397 TSFAVGLFLPGVDNFAHLGGFIAGILTAAIFLPSL 431
>gi|336395216|ref|ZP_08576615.1| membrane-associated serine protease [Lactobacillus farciminis KCTC
3681]
Length = 225
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 14/165 (8%)
Query: 137 LLAVNVLVYIAQF---ATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
LLA+ V V++ + +Q+ L L +GAK N L+ +GQ+WRL T FLH I H+++N
Sbjct: 16 LLAITVAVFLLETISGGSQNLLTLIHFGAKTNYLVQEGQWWRLITPIFLHIGIFHILMNG 75
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSF-- 247
++L +G +E + G R+L VY S I + S+ F N+ + GAS ++FG+ +F
Sbjct: 76 FTLLYVGQILEPMIGHWRFLIVYMLSGIMGNLASFAFGANNAISAGASTSLFGMFAAFLS 135
Query: 248 -AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
A+ +R + GK L +I+ N+ + L + GID WGH+
Sbjct: 136 LAIIYRENRFLTELGKSFL----GLIVINLLMDLTMSGIDIWGHI 176
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 24/187 (12%)
Query: 137 LLAVNVLVYI-------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNV++++ + +L + A + G++WRL T+ FLH ++ H+ V
Sbjct: 33 LIAVNVVIFVICALQARGVDMLRSQLFVDWALYKPWVADGEYWRLLTAGFLHFSVTHIAV 92
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLVGSF 247
N SL +G +E G RYLGVY ++ + SA M N GASGAI+GL+G+
Sbjct: 93 NMLSLYILGRDLEIAIGIPRYLGVYLTALLGGSAAVMVLGADNGVNAGASGAIYGLMGAV 152
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS------ 301
V +++ R + +I+ N+ + + I GI + HVGGL+ GAA +
Sbjct: 153 LVVVIKAR-------ASPTPVITIIVLNLVLSVTIPGISLFAHVGGLVFGAAATAGIIFG 205
Query: 302 --WLLGP 306
W+L P
Sbjct: 206 PQWVLAP 212
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 19/177 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ Q A D +L LW +L +++RL TS FLH HL+ N
Sbjct: 86 TYTLIAVNVLMFVLQIAGGDLESRLTLWP---PALALHDEYYRLVTSMFLHYGAMHLLFN 142
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +EK G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 143 MWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 202
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKGIDNW-GHVGGLLGGAAIS 301
V + RH N+ +++ + +++ N+ +G + +W GH+GGL+ GA ++
Sbjct: 203 V-VARHLNL------DVRAIGVIVVINLVFTFVGPALGTAISWQGHIGGLVTGALVA 252
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 19/185 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWG--------AKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N +V++ + + L + A + + G+F+RL T+ FLHA++
Sbjct: 78 TYLLIAINAVVFLLEQVSPRFELRYALIPGETGFAHPYAGVAGGEFYRLITAMFLHASVL 137
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGL 243
H++ N ++L +G +E + G R+L +YF + + S Y F S +GASGAIFGL
Sbjct: 138 HIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTAVYLFAPRGSATLGASGAIFGL 197
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI--S 301
+ VF R N +++ + VI+ N+A+ ++ G+ GH+GGLL G A+ +
Sbjct: 198 FAALFVF-GRRLNF------DIRPIGLVIVINLALTFVLSGVSWQGHIGGLLSGGALAAA 250
Query: 302 WLLGP 306
W P
Sbjct: 251 WSYAP 255
>gi|389843282|ref|YP_006345362.1| hypothetical protein Theba_0391 [Mesotoga prima MesG1.Ag.4.2]
gi|387858028|gb|AFK06119.1| putative membrane protein [Mesotoga prima MesG1.Ag.4.2]
Length = 282
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 131 RQWTNILLAVNVLVYI-----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAF 179
R T L+ +NV+VY+ + +D + ++G + G + T+ F
Sbjct: 5 RSATITLIIINVIVYLLVAFMGLFRGPQGISYRDLITVYGGVSRFALSNGLIYTPLTALF 64
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGA 239
LH N+ H++ N ++L +G +E + G + YL YF + I+ S + F + +G+S A
Sbjct: 65 LHGNLMHILFNMWALFQLGHVVEGVYGSKWYLLFYFVTGISGSLSAAAFSTAFTIGSSSA 124
Query: 240 IFGLVGSFAVFIMRH------RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
IFGLVG ++ R+I G L +I+ N+ +G I GI N H+GG
Sbjct: 125 IFGLVGILFTLGLKKDTPVVLRSITG------YSLLPIILINLFLGFSIPGISNAAHIGG 178
Query: 294 LLGGAAISWLLGPA 307
L+ GA I W PA
Sbjct: 179 LVVGAIIGWFAKPA 192
>gi|297801768|ref|XP_002868768.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297314604|gb|EFH45027.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 399
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI GQ+WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 182 LLYGAKINDLILAGQWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 241
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ + MS+ P VG +G F L+G++ V +++ ++ E + L + I
Sbjct: 242 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMI--KSNEYEDLFQKAIIM 299
Query: 276 MAIGLLIK---GIDNWGHVGGLLGGAAISWLLGPALKYEFTSD 315
GL++ ID+W ++G L+ G + P L+ E S+
Sbjct: 300 TGFGLILSHFGPIDDWTNLGALIAGIVYGFFTCPVLQLERGSE 342
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 134 TNILLAVNVLVY-IAQFATQDKLLLWGAKINSLI-----------DKGQFWRLATSAFLH 181
T ++AVNV+V+ + D + G + + + D G +WRL TSAFLH
Sbjct: 73 TMAIIAVNVVVFALTDIVGTDAITAAGRMVGADVIDTQGRLWPGMDDGGYWRLLTSAFLH 132
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
A + HL+ N Y+L GP +E+ G RY+ Y + A+ S A+ Y + + VGASGA
Sbjct: 133 AGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSGAVVYLLTDPRTFTVGASGA 192
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
+FGL G V ++R K++++ L ++ N I L I GH+GG + G
Sbjct: 193 VFGLFGYALVLLVR-------AKQDVRTLLVLLAVNGVIS-LAPNISWQGHLGGFIAG-- 242
Query: 300 ISWLLGPALKY 310
LG A+ Y
Sbjct: 243 --LTLGAAVAY 251
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 46 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 105
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
+ + M+ + AV GAS A+FGL G+ + +R E + +L + +
Sbjct: 106 GVGGNLMTLALGSDNAVSAGASTALFGLFGAMIALGIANRT-----HEGMAYLGRQSFVL 160
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ N+ + I ID WGHVGGLL G ++ +LG
Sbjct: 161 AVINLLFDINIPQIDTWGHVGGLLAGFLLTVILG 194
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I + LL WGA + +GQ+WRL T+ FLH I
Sbjct: 156 TPILIDLNILVFILMTISGVNILMPDNESLLNWGANFRPITLEGQWWRLLTNCFLHVGIF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
HL++N Y+L IG +E + G R++ Y + I +S S + + + + GASGAIFG+
Sbjct: 216 HLLLNMYALLYIGVLLEPLLGRTRFISAYLLTGITASITSLWWHDLTISAGASGAIFGMY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
G F + + K L +A + +N+ GL GIDN H+GGLLGG I +
Sbjct: 276 GVFLAMLTTNLIEKTARKPLLTSIAVFVGYNLIYGLK-GGIDNAAHIGGLLGGLIIGYAF 334
Query: 305 GPALK 309
P+LK
Sbjct: 335 IPSLK 339
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 104 NGGGTRKNSGHEGTSH-LDTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQDKL 155
GG + G T H + AR G R T IL+ +N+ V+ A D+
Sbjct: 46 RGGAQGSSGGRVPTGHPVRDARPRTIAGGALTADPRLVTKILIGLNLAVWFVALAIGDRF 105
Query: 156 L----LWGAKINSL------IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKIC 205
+ L G + + +GQ++RL T+ FLH H+ N SL +G +E
Sbjct: 106 VNALDLVGRAYDPTAAGLVGVAEGQWYRLVTAMFLHQQAYHIAFNMLSLWWLGGPLEAAL 165
Query: 206 GPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKE 263
G RYL VY + + SA+SY N P++GASGAIFGL+G+ AV +MR N
Sbjct: 166 GRARYLAVYLLAGLGGSALSYLLAAQNQPSLGASGAIFGLLGATAV-LMRRLN------Y 218
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+++ + +++ N+ GI HVGGL+ G A+++
Sbjct: 219 DMRPVIALLVLNLIFTFAWSGIAWQAHVGGLVVGTAVAY 257
>gi|347525683|ref|YP_004832431.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
gi|345284642|gb|AEN78495.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 27782]
Length = 219
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 134 TNILLAVNVLVYIAQ-FATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +L+ +NV +Y+ FA + L+ +GA + G++WRL T+ FLH + HL
Sbjct: 11 TCVLIGINVAIYLLMTFAGGSQNPSVLVRFGANFAPYVSNGEYWRLLTAMFLHIGLEHLA 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
+N +L IG ++E I G R+ +Y S I A SY N + GAS A+FGL G++
Sbjct: 71 LNMLTLYFIGASLEPILGSVRFAVLYLVSGICGDAASYSLTNGLSAGASTALFGLFGAYL 130
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ RN Q L V++ N+ I GID WGH+
Sbjct: 131 MLGESFRNNAYIKMMSRQFLLLVVL-NIFIDFFNSGIDIWGHI 172
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
L+ G +RL S F+H HL+VN ++L IG +E I G RYL VYF S + SA
Sbjct: 67 LVANGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVELILGRSRYLAVYFLSLLGGSAS 126
Query: 225 SYRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
N A GASGA+FGL+G+ AV ++R K + +I N+ I + I
Sbjct: 127 VMVLENPLAATAGASGAVFGLLGAQAVILLRL-------KRSPAPVLIIIALNIFISVSI 179
Query: 283 KGIDNWGHVGGLLGGAAIS 301
I WGH+GGL+ GAA++
Sbjct: 180 PSISLWGHMGGLVAGAAVT 198
>gi|218190628|gb|EEC73055.1| hypothetical protein OsI_07010 [Oryza sativa Indica Group]
Length = 483
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 134 TNILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANI 184
TN+L A+N+ V + + A+ + L++GAKIN LI G++WRL T LH+
Sbjct: 252 TNLLAAINIAVMLFEIASPVRNSDIENLSLPLMYGAKINDLILSGEWWRLLTPMCLHSGF 311
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
H+ + C+ L GP + + G +L +Y + + SY + V +G +F L+
Sbjct: 312 LHIALGCWVLLIFGPRVSRAYGQTTFLLMYILGGVCGNLTSYLHTSELTVCGTGPVFALI 371
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG-IDNWGHVGGLLGGAAISWL 303
G++ V+ ++++ + E V+ ++ L G IDNW H+G + G +L
Sbjct: 372 GAWLVYQSQNKDAIDKNVSETMFSQAVVATTLSFLLSSFGRIDNWTHLGATICGLLFGYL 431
Query: 304 LGPALKYEFTSDDG 317
P+++ + + G
Sbjct: 432 TCPSVQVDNAAKKG 445
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N + G++WRL T F+H I H++ N +SL GP +E++ G R++ Y +
Sbjct: 45 GIGYNLAVANGEWWRLITPIFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTG 104
Query: 219 IASSAMSYR---FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ ++ +Y P +GASGAIFGL G F ++ ++++ +L + ++I
Sbjct: 105 VIANIATYYLGGLSYPPHLGASGAIFGLFGMFVYLVLFRKDLIDQANSQL--VMTILIIG 162
Query: 276 MAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK----YEFTSDDGFRIFSDRAPIFHLI 331
+ + + I+ H+ GLLGGAA++ L +K Y+ D P F+
Sbjct: 163 LVMTFVNSNINVLAHLFGLLGGAALAPLFLTGVKPYHMYQHVHD-------TSEPTFNPN 215
Query: 332 DWKRK 336
W++K
Sbjct: 216 RWQKK 220
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 159 GAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA+ N ++I GQ+WRL T+ FLH + HL+VNC +L +G +E + G R+L +Y +
Sbjct: 32 GAQFNPAIIILGQWWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLA 91
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
+ + M+ + AV GAS A+FGL G+ + +R E + +L + +
Sbjct: 92 GVGGNLMTLALGSDNAVSAGASTALFGLFGAMIALGIANRT-----HEGMAYLGRQSFVL 146
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ N+ + I ID WGHVGGLL G ++ +LG
Sbjct: 147 AVINLLFDINIPQIDTWGHVGGLLAGFLLTVILG 180
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 19/184 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFL 180
R T +L+ + + V++AQ + D L+ A + L D +GQ++RL TS FL
Sbjct: 100 RLVTKVLIGICLAVFLAQLSMGDPFTDRFDLMGRAYVPELGDVEGVAEGQWYRLLTSMFL 159
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASG 238
H + H++ N SL IG +E G RY+ +Y S +A SA++Y N P++GASG
Sbjct: 160 HGSYIHILFNMLSLWWIGGPLEAALGRVRYIALYLVSGLAGSALTYLIAAANQPSLGASG 219
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFGL G+ AV + R + +++ + +++ N+ + I H+GGL+ G
Sbjct: 220 AIFGLFGATAVLMRRL-------QYDMRPVIALLVINLIFTFGLAQIAWQAHIGGLVAGL 272
Query: 299 AISW 302
+ +
Sbjct: 273 LVGY 276
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+ +N++V+ +A+ + L+ G+ + ++ +G++WRL T+ FLH ++ H
Sbjct: 80 TYALIVINLIVFGLCVAEAGITNPGNAALMSDGSLVKGIVGEGEYWRLLTAGFLHFSVMH 139
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ VN SL IG +E+ G RYL VY S + SA M + N GASGAI+GL+
Sbjct: 140 VAVNMISLYIIGRDLERALGTYRYLAVYLISLLGGSAAVMLFEADNVQTAGASGAIYGLI 199
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG----AAI 300
G+ V +++ R + +I FN+ + + + GI H+GGL G AAI
Sbjct: 200 GAMLVIVLKAR-------VPATPVLVIIGFNVVLSVSLPGISLMAHLGGLAFGVAATAAI 252
Query: 301 SWLLG 305
+L G
Sbjct: 253 VYLPG 257
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+L+ + +++Y+ F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 166 NVLIWLIMILYLNHFSDV-KLLDLGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 224
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I GP R LG+Y S + + +S F ++ +VGASGAIFGL+GS +
Sbjct: 225 FIFGKIVESIVGPLRMLGIYVISGLLGNFISLSFNLHTVSVGASGAIFGLIGSIFAMMFV 284
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFT 313
+ K+ + + ++ + + L + I+ H+GG +GG I+ L+G Y FT
Sbjct: 285 SKTY---SKKTIGQMLIALLVLIVLSLFMSNINIMAHLGGFIGGVLIT-LIG----YYFT 336
>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 282 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 341
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 342 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 401
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ + +++++++ E + H A + +I ID+W H G G A +
Sbjct: 402 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFTGIAYGYFT 461
Query: 305 GPALKYEFTS 314
P ++ TS
Sbjct: 462 CPTIQLNHTS 471
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 15/174 (8%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++ + VLV+IA LL +GA+ L+ GQ+WRL TSAF+H I HL+
Sbjct: 11 TITIIVIRVLVFIAMELNGGSTNTVTLLNFGAEYTPLLVAGQWWRLITSAFVHIGIMHLL 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N L +G +E++ G + + +Y S I+ + +S S A G+S IFGL G+F
Sbjct: 71 LNSIVLYYMGNYIEQLFGHWKLILIYIISVISGNLLSAALSPTSIAAGSSTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGG 297
HR + L+ L + ++I N+ L+ ID WGH+GGLL G
Sbjct: 131 IFLGAEHRQ-----QSFLRILTRQYIILMIINLVFDLMSPSIDIWGHLGGLLAG 179
>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa]
gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 137 LLAVNVLVYI---------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L ++N+ V++ ++FA LL+GAKIN LI G++WRL T FLH+ H+
Sbjct: 253 LASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEWWRLVTPMFLHSGAFHV 312
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ +SL + GP + + G + +Y I+ + S+ P VG +G +F ++G++
Sbjct: 313 VLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAW 372
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK---GIDNWGHVGGLLGGAAISWLL 304
++ ++++++ K++ + + + A+ ++ ID+W H+G +L G +
Sbjct: 373 LIYQNQNKDVI--SKDDFDRMFQKAVITTAVSFILSHFGPIDDWTHLGAVLTGIVYGFFT 430
Query: 305 GPALKYEFTS 314
L+ + S
Sbjct: 431 CATLQLDDAS 440
>gi|375088668|ref|ZP_09735006.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
gi|374561633|gb|EHR32972.1| hypothetical protein HMPREF9703_01088 [Dolosigranulum pigrum ATCC
51524]
Length = 232
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L++ GAK N LI ++WRL T FLH + HL+ N + +G +E I G R+
Sbjct: 41 ESLIIMGAKFNELIIYNNEWWRLITPIFLHIGVPHLLFNMLVVYFLGQQIEFIFGHVRFA 100
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK- 270
+Y S + +A S+ F S + GAS AIFGL S V ++ EL LA+
Sbjct: 101 LLYLFSGLMGNAFSFAFNTSLSAGASTAIFGLFVSTIVLSKLFPHV-----RELGMLARQ 155
Query: 271 ---VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+I N+ + G+DN GH+GGL+GG IS+
Sbjct: 156 YGMLIFLNIVFSFMSGGVDNMGHIGGLVGGYLISY 190
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 20/184 (10%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ NVLV+I +++Q LL WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYFNVLVFILMAWSSQHFINLQGSFLLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G ++ + E++ +LA + ++ GLL G+DN HVGGLL G
Sbjct: 450 GILVIWAWKKIF-----PEDINWILSINLAFFVTISLVAGLL-GGVDNAAHVGGLLSGLV 503
Query: 300 ISWL 303
+ +L
Sbjct: 504 VGYL 507
>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]
Length = 486
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ + +++++++ E + H A + +I ID+W H G G A +
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFTGIAYGYFT 424
Query: 305 GPALKYEFTS 314
P ++ TS
Sbjct: 425 CPTIQLNHTS 434
>gi|326803846|ref|YP_004321664.1| S8/S53 family peptidase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650087|gb|AEA00270.1| peptidase, S54 family [Aerococcus urinae ACS-120-V-Col10a]
Length = 221
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 134 TNILLAVNVLVYIAQ-----FATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
T LLA+ +++Y+ + LLL+GAK N+LI GQ+WRL T F+H +HL
Sbjct: 8 TYTLLAIQIIIYLLMEFTGSSLSSSTLLLFGAKENALIAIYGQYWRLLTPIFVHIGFSHL 67
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
+ N +L +G +E I G R+L +Y S I + SY+F S + GAS A+FGL F
Sbjct: 68 LFNSITLWYLGSEVEGIIGSWRFLFIYLYSGIMGNLFSYQFSTSVSAGASTALFGL---F 124
Query: 248 AVFI-MRHRNILGGGKEELQH-LAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
A F+ MR+ N + + + +II N+ + L + +D GH+GG++GG
Sbjct: 125 AFFLAMRYLNPHDRYFQAMGYQYQTLIILNIIMNLFMANVDMSGHIGGIVGG 176
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+ +NV+++ Q + D +L+L+ + + G+++RL TSAFLH + H++ N
Sbjct: 72 TYVLIGINVVMFGLQTVSVDLQRELVLF----SPAVADGEWYRLLTSAFLHYGVTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFA 248
++L +GP +E G R++G+YF+SA+ S + Y + + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYLLSSLGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGG 297
F++ R L +++ + +I NMA +I + I GH+GGL+ G
Sbjct: 186 TFVVGKRLNL-----DVRWVIGLIALNMAFTFVIPLVSSQNISWQGHIGGLVTG 234
>gi|255690223|ref|ZP_05413898.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
gi|260624242|gb|EEX47113.1| peptidase, S54 family [Bacteroides finegoldii DSM 17565]
Length = 584
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ + LL WGA L G +WR
Sbjct: 145 SFFIPRKGFMATPILIDLNILVFIVMIASGVEIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E + G RR Y + + S+ S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GASGAIFGL G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 265 AGASGAIFGLYGIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 27/210 (12%)
Query: 115 EGTSHL-DTARTNLFIG-------RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA--- 160
GT H D +R G R T IL+AVN+ V+IA ++Q + L L G+
Sbjct: 58 SGTGHAPDASRPRTIAGGSIAADPRLVTKILVAVNLAVFIAVQSSQSLRNDLYLIGSWPP 117
Query: 161 ---KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+ + +G++WRL TS F H + H N SL +G +E G RYL +YF S
Sbjct: 118 APFQPTQGVAEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPLEAALGRARYLALYFCS 177
Query: 218 AIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+A SA +Y + + ++GASGAIFGL G+ AV + R + + + + L +IF
Sbjct: 178 GLAGSAFTYLLADPHTASLGASGAIFGLFGATAVLLRRLQYDM---RPIIALLVINLIFT 234
Query: 276 MAIGLLIKGIDNW-GHVGGLLGGAAISWLL 304
A G I +W H+GGL+ G I + +
Sbjct: 235 FAPGFNI----SWQAHIGGLVAGVIIGYAM 260
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL------IDKGQFWRLATSAF 179
R T IL+ VN+L+++ Q D L+ A + L + +GQ++RL TS F
Sbjct: 82 RLLTKILIGVNLLLFLVQQILGDTFTDRFDLIGRAWVPELGTSLQGVAEGQWYRLVTSMF 141
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH ++ H++ N SL IG +E G RYL +YF+S +A SA++Y N P++GAS
Sbjct: 142 LHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAGSALTYLLAAPNQPSLGAS 201
Query: 238 GAIFGLVGSFAVFIMRHR 255
GAIFGL G+ V + R R
Sbjct: 202 GAIFGLFGATGVLMRRLR 219
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I +D Q++RL T+AFLHA
Sbjct: 134 TQILIGLCVVAYILQGAPGLAGGDTSNRFTDDFAMIGFRIA--VDD-QYYRLLTAAFLHA 190
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 191 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 250
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
F ++ V R R + Q + V+ N+ I ID WGH+GGL G
Sbjct: 251 FAFFSAYYVIARRLR-------VDSQQILIVLGINLLITFSFSSIDKWGHLGGLAAG 300
>gi|302531387|ref|ZP_07283729.1| predicted protein [Streptomyces sp. AA4]
gi|302440282|gb|EFL12098.1| predicted protein [Streptomyces sp. AA4]
Length = 320
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 22/181 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGA-KINSL--------IDKGQFWRLATSAFLHANI 184
T L+AVNV +++ L GA +I L + G++WR+ TS FLH
Sbjct: 88 TATLIAVNVAIFLITVVQAKSLFDNGAARIEMLGELWTYPALGGGEWWRIFTSGFLHYGP 147
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFG 242
H+ N +SL +G +E++ G R+L +YF S +S F N P+ GASGAIFG
Sbjct: 148 IHIAANAFSLWMMGRALEQVFGKSRFLALYFVSMFGASTAVLLFDAPNRPSAGASGAIFG 207
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVI--IFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
L+GS+AV +++ R L A +I + N + I I HVGGL+ GA +
Sbjct: 208 LLGSYAVIVLKLR---------LNPTALLINLVINAYVTFTIPQISILAHVGGLVTGALV 258
Query: 301 S 301
+
Sbjct: 259 A 259
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+ K ++WRL T+AFLH ++ H+ N Y+L +G +E I G RYL ++F+ AI + +
Sbjct: 217 IAQKHEYWRLVTAAFLHGSVLHIAFNMYALFLLGTQLEAILGRVRYLALFFACAIGGNTL 276
Query: 225 SYRFCNSPA--VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
SY + A GAS AIFG FA + + R + + + V+ N+ I I
Sbjct: 277 SYVIHDEKAFSYGASTAIFGF---FAAYYLIARRL----RVNTNQILIVVGINLLITFSI 329
Query: 283 KGIDNWGHVGGLLGGAAISWL 303
GID WGH+GGL G + L
Sbjct: 330 SGIDKWGHIGGLATGVVLGLL 350
>gi|374313630|ref|YP_005060060.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358755640|gb|AEU39030.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 225
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANI 184
T L+A+NVLV+ A A T + WG L + Q+WRL TS FLH I
Sbjct: 24 TYALIAINVLVFAAMVASGVSFTEPTALDVANWGGDFGPLTVGAHQWWRLLTSCFLHFGI 83
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGL 243
H+ N Y L IGP +E G RYL +YF + + S +S + GASGAIFGL
Sbjct: 84 IHIGFNMYVLFQIGPFIEMAFGRIRYLLIYFFAGLGGSLVSVWVHPMVVGAGASGAIFGL 143
Query: 244 VGSFAVFIMRHRNILGGG--KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G+ F++R+R L K + +++N+ G + + D H GGL+ G +
Sbjct: 144 YGAVFGFLLRNRRSLDPAVTKSIAKSAGIFVLYNVVYGSITRTTDLSAHFGGLVTGFVVG 203
Query: 302 WLL 304
LL
Sbjct: 204 MLL 206
>gi|336406188|ref|ZP_08586849.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
gi|335935437|gb|EGM97389.1| hypothetical protein HMPREF0127_04162 [Bacteroides sp. 1_1_30]
Length = 584
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E + G RR Y + + S+ S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GASGAIFGL G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 265 AGASGAIFGLYGIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|295085069|emb|CBK66592.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Bacteroides xylanisolvens XB1A]
Length = 584
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E + G RR Y + + S+ S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GASGAIFGL G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 265 AGASGAIFGLYGIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 22/162 (13%)
Query: 154 KLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L++ GA+ LI Q++R T+ F+H I H+ N Y+L +G +E++ GP ++L
Sbjct: 43 TLIVAGAQYGKLITIYHQYFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLT 102
Query: 213 VYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG-KEELQHLAK 270
+Y +S I ++ F N+ +VGASGAIFGL+G + G G +++ + K
Sbjct: 103 IYLASGIGGGILTQIFIPNAFSVGASGAIFGLIGL----------LFGAGFRDDTPPMLK 152
Query: 271 ---------VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
VI+ N+ +G GI+N+ H+GGLL G WL
Sbjct: 153 PMTGTALLPVILINLFLGFTSSGINNFAHIGGLLVGFTFGWL 194
>gi|298480750|ref|ZP_06998946.1| S54 family peptidase [Bacteroides sp. D22]
gi|298273184|gb|EFI14749.1| S54 family peptidase [Bacteroides sp. D22]
Length = 584
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFIATPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E + G RR Y + + S+ S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEDLIGSRRMFMSYLLTGLCSAVFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GASGAIFGL G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 265 AGASGAIFGLYGIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|52081023|ref|YP_079814.1| integral membrane protein GluP [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319645019|ref|ZP_07999252.1| YqgP protein [Bacillus sp. BT1B_CT2]
gi|404489905|ref|YP_006714011.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52004234|gb|AAU24176.1| TPR motif integral membrane protein GluP [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348902|gb|AAU41536.1| rhomboid protease YggP [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392828|gb|EFV73622.1| YqgP protein [Bacillus sp. BT1B_CT2]
Length = 512
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S+ I S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAF--LKTIGTNIIVII 326
Query: 273 IFNMAIGLLIKGIDN 287
I N+ +G I +DN
Sbjct: 327 ILNLGLGFTISNVDN 341
>gi|423682997|ref|ZP_17657836.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
gi|383439771|gb|EID47546.1| integral membrane protein GluP [Bacillus licheniformis WX-02]
Length = 512
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+ +GAK NSL+ G++WRL T LH + HLM N ++L S+G E++ G R+L
Sbjct: 209 ETLVRFGAKENSLLLAGEWWRLVTPIVLHIGLVHLMFNTFALLSVGAAAERVFGSFRFLV 268
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+Y S+ I S S+ F P+ GASGAIFG +G+ +R K ++ +I
Sbjct: 269 IYISAGIFGSIGSFLFSPYPSAGASGAIFGCLGALLYLAFSNRKAF--LKTIGTNIIVII 326
Query: 273 IFNMAIGLLIKGIDN 287
I N+ +G I +DN
Sbjct: 327 ILNLGLGFTISNVDN 341
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V+ YI Q A D + G +I + Q++RL T+AFLHA
Sbjct: 45 TQILIGLCVVAYILQGAPGLAGGDNSNRFTDDFAMIGFRIAA---DDQYYRLLTAAFLHA 101
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAI 240
+ H++ N Y+L +G +E I G RYLG++ + A+ + +SY ++ +VGAS AI
Sbjct: 102 GVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLLGGLSTASVGASTAI 161
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
F ++ V R R + + + V+ N+ I ID WGH+GGL G +
Sbjct: 162 FAFFAAYYVIARRLR-------VDSRQILVVLGINLLITFSFSNIDKWGHLGGLAAGVIV 214
Query: 301 SWL 303
+
Sbjct: 215 GLI 217
>gi|330997596|ref|ZP_08321442.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329570307|gb|EGG52042.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 478
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 136 ILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+LL N+LV+ T LL WGA L G +WR+ T F+H+ + HL
Sbjct: 63 LLLGCNILVFFVMCLTGVGVLEPDNISLLHWGANFGPLTLTGDYWRVWTCNFVHSGLIHL 122
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAIFGLVG 245
++N Y+L +G +E + G R + VY + + SS FC++ +VGASGAIFGL G
Sbjct: 123 IMNVYALLFVGLFLEPMLGSLRVVMVYSLAGLYSSVAGL-FCHADWISVGASGAIFGLYG 181
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ ++ ++ K L + I++N+ G+ +DN H GGL+ G + + G
Sbjct: 182 ALFARLLFYKGQSSWRKILLIAIGGFILYNLLYGIGDNNVDNAAHTGGLVAGFLLGVVYG 241
Query: 306 PALK 309
A K
Sbjct: 242 VADK 245
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
T L+A N+LV++ L WGA G++WRL T+ FLH
Sbjct: 25 TKCLIAANLLVFVLMLFNGAGFWHSPNNVQLQLAWGANFGPATQDGEWWRLFTALFLHFG 84
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIF 241
HL +N + G +E++ G RYL +Y S + + +S + + AV GASGAIF
Sbjct: 85 AVHLALNMIAFWDGGQLVERMYGHWRYLVIYLVSGLVGNLLSLVWQGNQAVSGGASGAIF 144
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHL-AKVIIF---NMAIGLLIKGIDNWGHVGGLLGG 297
G+ G+ VF+ + R +L + E + L +F +A+G +I IDN H+GG + G
Sbjct: 145 GIYGALIVFLWQERALL--DRREFRWLFGGACVFATATIALGFMIPAIDNAAHIGGFVAG 202
>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]
Length = 477
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 14/185 (7%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++C++L + G + + GP + +Y ++ + S+ P VG +G +F ++G++
Sbjct: 292 ALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTGPVFAMIGAW 351
Query: 248 AVFIMRHRNILG---GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++++++ K L+ L +I ++ I ID W H G G +L
Sbjct: 352 LSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSN--IGPIDEWTHTGAAFSGMLYGFLT 409
Query: 305 GPALK 309
P ++
Sbjct: 410 SPIVE 414
>gi|313884239|ref|ZP_07818005.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
gi|312620686|gb|EFR32109.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
Length = 229
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
++WR+ ++ F+H ++HL+ N +L +GP +E+I G ++L +Y + I + S F
Sbjct: 55 EYWRILSATFVHIGMSHLLFNMMTLYFMGPELEEILGHIKFLLIYLIAGIGGNLTSLAFN 114
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII----FNMAIGLLIKGI 285
+ GAS A+FG+ +F V + H + L ++ I N+ G L GI
Sbjct: 115 TGVSAGASTALFGMFAAFIVLAIIHPD-----SHYLWQRSRSFIILVGLNLVNGFLSPGI 169
Query: 286 DNWGHVGGLLGGAAISWLLG 305
DNWGH+GGLL GA ++++G
Sbjct: 170 DNWGHLGGLLFGALATYVIG 189
>gi|227892800|ref|ZP_04010605.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
gi|227865441|gb|EEJ72862.1| S54 family peptidase [Lactobacillus ultunensis DSM 16047]
Length = 226
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+ GA N + G Q+WRL T+ FLH + HL+ N + +G +E I G R
Sbjct: 35 STNVLMKMGAMNNLAVVAGHQWWRLFTAQFLHIGVMHLVSNAVIIYYMGQYIEPIMGHYR 94
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQH 267
YL Y + I + S F + GAS A+FGL G+ + RNI L
Sbjct: 95 YLATYLLAGIGGNLFSLAFSADRGLSAGASTALFGLFGAMTA--IGLRNIHNPMISFLGR 152
Query: 268 LAKVI-IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAP 326
A V+ I N+A+ + I GID WGHVGGL+ G ++ +LG + ++ D +R+ + A
Sbjct: 153 QAFVLAIINLALDIFIPGIDIWGHVGGLITGFLLAIVLGDRVMKKY--DPKWRVLAGAAL 210
Query: 327 IFHLI 331
IF+++
Sbjct: 211 IFYVV 215
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 131 RQWTNILLAVNVLVYIAQF----ATQDKLLLWG----AKINSL--IDKGQFWRLATSAFL 180
R T +L+ +N+ ++ Q A D+ L G + NS+ + +GQ++RL T+ FL
Sbjct: 69 RLVTKVLIGLNLAFFLVQLSVGDAFTDRFSLLGQAYVPQFNSVEGVAQGQWYRLITAMFL 128
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
HAN H++ N SL IG +E G RYL +YF S +A SA++Y N P++GASG
Sbjct: 129 HANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGSALTYLLAAPNQPSLGASG 188
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAI 278
AIFGL G+ AV + R R +++ + +++ N+ I
Sbjct: 189 AIFGLFGATAVLMRRLRY-------DMRPVIALLVINLII 221
>gi|163815124|ref|ZP_02206505.1| hypothetical protein COPEUT_01280 [Coprococcus eutactus ATCC 27759]
gi|158449533|gb|EDP26528.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 333
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T I L +N+LVY+A L + ++ +K Q++R TS F H I HL+ N
Sbjct: 148 TPIFLLMNILVYLACVYIYQPTEL-AVNVYAISEKRQYYRFLTSMFTHFGITHLLGNMVI 206
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSP---AVGASGAIFGLVGSFA 248
L ++G +E I G Y+ VY + +A++ SY FCN + GASGAIFGL+G
Sbjct: 207 LIALGARIENIIGRLNYVIVYIVTGLAAAFASYINFFCNDIYDYSAGASGAIFGLLGVLV 266
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAI--GLLIKGIDNWGHVGGLLGG--AAISWLL 304
V ++ G ++L + +I+F + + GL+ +GIDN H G + G A I LL
Sbjct: 267 VIAFYNK----GRVKDLSLMNMIILFILTLVDGLMSEGIDNVAHAAGFMAGILAGIVLLL 322
>gi|375092943|ref|ZP_09739208.1| putative membrane protein [Saccharomonospora marina XMU15]
gi|374653676|gb|EHR48509.1| putative membrane protein [Saccharomonospora marina XMU15]
Length = 309
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 28/181 (15%)
Query: 134 TNILLAVNVLVYI-AQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLH 181
T +L+A+N+LVY+ QD + +LW I + ++WRL TS FLH
Sbjct: 95 TPVLIALNLLVYVLTAVQAQDFMRNDVSRLFNDGVLWPVGIAA---ADEWWRLVTSGFLH 151
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
+ H+ +N +L +G +E + G R+L VYF S + SA + F N+ GASGA
Sbjct: 152 FGLLHIGMNMLALWILGRDLELLLGKVRFLAVYFVSMLGGSAAVFAFGAVNTGTAGASGA 211
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAK--VIIFNMAIGLLIKGIDNWGHVGGLLGG 297
I+GL+G+ V ++R R L A +I+ N+ + + I GI GH+GGL+ G
Sbjct: 212 IYGLMGAILVAVLRLR---------LNPTAAIGIIVLNVVLTISIPGISLLGHLGGLVVG 262
Query: 298 A 298
A
Sbjct: 263 A 263
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 21/172 (12%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+A+NV++++ Q + Q L+L + + G ++RL TSAFLH IAHL+ N
Sbjct: 77 TYTLIAINVVMFVLQTVSPNLQSDLVLRSPSVAT----GDWYRLVTSAFLHYGIAHLLFN 132
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
Y+L +GP++E G R+ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 133 MYALYIMGPSLESWLGRLRFSALYAMSALGGSVLVYLLSPLNAATAGASGAVFGLFG--A 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID----NW-GHVGGLL 295
F++ R L +Q + +I+ N+A +I + +W GH+GGL+
Sbjct: 191 AFVIGKRLNL-----NVQWVVGLIVLNLAFTFVIPALGGQQISWQGHIGGLV 237
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 12/205 (5%)
Query: 134 TNILLAVNVLVY--------IAQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANI 184
T ++L+ NVL+ I F Q LL+ GA+ L+ G+++R+ T+ F+H +
Sbjct: 7 TYVILSFNVLIAVFMFFLSSIPVFRNQAYLLIRLGAQYGPLVSGGEWYRVITAMFVHGGL 66
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGL 243
HL+ N Y+L G +E I G +++ Y + A+ + A + S +VGASGAIFGL
Sbjct: 67 LHLLFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGNLATHVFYYRSISVGASGAIFGL 126
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISW 302
VG R + + L +IIFN+ G + I+N H+GG L G AI +
Sbjct: 127 VGILFALGFRRDTPIFMRQFTGMALLPMIIFNVVYGFMPGSNINNAAHLGGFLAGMAIGY 186
Query: 303 LLGPALKYEFTSDDGFRIFSDRAPI 327
P Y + G RIF A I
Sbjct: 187 FADPRPVYA-SWKRGSRIFWKAAAI 210
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 137 LLAVNVLVYIA--------QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+ +NV+V++A A L WGA GQ+WRL ++ F+H + HL
Sbjct: 30 LMVLNVMVFLAIALAGGGWWHAVNGVQLDWGANFAPATQDGQWWRLLSAMFIHFGVWHLA 89
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
VN ++L IG +E + G R+ +Y + + + +S + AV GASGA+FGL G+
Sbjct: 90 VNMWALWDIGRLLETLLGRWRFAALYLGAGVCGNLLSLVVQGNRAVSGGASGAVFGLYGA 149
Query: 247 FAVFIMRHRNILGGGKEELQHLAKV--IIFNMAIGLLIKGIDNWGHVGGLLGG 297
VF+ R + G+ + + +A+G + GIDN H GGL+ G
Sbjct: 150 LLVFLWVERKQVEAGEFRWLFGGALGFSVLMLALGWFMPGIDNAAHGGGLVAG 202
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+G + N LI KG++WR+ ++ FLHA H+ N +SL GP +EKI G R++ +Y S
Sbjct: 4 YGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVS 63
Query: 218 AIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNIL 258
I + +Y F +S ++GASGAIFG+ G+F + R +
Sbjct: 64 GIVGNMATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRKTM 106
>gi|332880624|ref|ZP_08448298.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357046009|ref|ZP_09107639.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
gi|332681612|gb|EGJ54535.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531015|gb|EHH00418.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
Length = 476
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 134 TNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL +N LV++A F LL WGA L G +WR+ T ++H +
Sbjct: 59 TPLLLDLNFLVFLAMCLSGVGIFFPDNVDLLHWGADFAPLTLTGDYWRVLTCNYVHVGLI 118
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLV 244
HL +N Y+L IG +E + G RR Y S + +S S A GASGAIFGL
Sbjct: 119 HLAMNMYALLFIGLFLEPLAGSRRMAMAYVLSGLYASLASLSVNAEWIAAGASGAIFGLY 178
Query: 245 GSFAVFIMRHRNILGGGKEE----LQHLAKVIIFNMAIGLLIKGIDNWGHV 291
G F +++ R GG+E L +A I++N+ G+ +DN HV
Sbjct: 179 GLFFAYLLLRR----GGEERRKTLLISIAVFILYNLLFGMRDDSVDNAAHV 225
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 137 LLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
L +N+ VY+ + + GA IN LI +G++WR+ T+ F+H H++ N + L
Sbjct: 21 FLLINIAVYLVGLVPSIGNWIFAKGAAINFLIAQGEYWRVVTAIFIHGGFMHVLSNMFWL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIM 252
GP +E+I G R+ +Y + I + +Y + N +VGASGAIFG++G+F +
Sbjct: 81 YVFGPELERIAGKARFFTIYMLAGILGNVFTYIWQPLNYASVGASGAIFGILGAFLALVY 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
R I K Q + +++ ++ I L ++ H+
Sbjct: 141 YTRKIFPQLK---QMIVPLVVISVIITFLQPNVNVIAHI 176
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIITSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R LG+YF + + + +S F + +VGASGAIFGL+G A+F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIG--AIFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
M + + K+ L L ++ + + L + I+ H+GG +GG I+
Sbjct: 282 MMYVS-KTFNKKMLGQLMIALVILIGVSLFMSNINIVAHIGGFVGGLLIT 330
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+L++ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLIFALCVLQAGVGDPGGASIFSAGDLLKSDVAAGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F N A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAAVMLFENDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ V I++ R + +I FN+ + + GI GH+GGL+ GAA
Sbjct: 134 GAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGHLGGLVFGAA 181
>gi|227890613|ref|ZP_04008418.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|417788071|ref|ZP_12435754.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|417810486|ref|ZP_12457165.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|418961160|ref|ZP_13513047.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
gi|227867551|gb|EEJ74972.1| S54 family peptidase [Lactobacillus salivarius ATCC 11741]
gi|334308248|gb|EGL99234.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
salivarius NIAS840]
gi|335349282|gb|EGM50782.1| S54 family peptidase [Lactobacillus salivarius GJ-24]
gi|380344827|gb|EIA33173.1| rhomboid family integral membrane protein [Lactobacillus salivarius
SMXD51]
Length = 220
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ R LQ +++ ++I N+ G+ D GH+GGL+ G + ++
Sbjct: 132 LMLGESFRR-----NPYLQTMSRQFFLLVILNIFFGMFGNS-DLTGHLGGLVSGFLLGYV 185
Query: 304 LG 305
+G
Sbjct: 186 VG 187
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 134 TNILLAVNVLVYIAQFATQD--KLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHLMVN 190
T +A++V++++ Q A QD +LL+ +NSL + GQ++RL TS FLH HL+ N
Sbjct: 67 TYTFIAISVVMFVVQLAAQDVERLLV----LNSLAVADGQWYRLLTSTFLHFGPVHLLFN 122
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y + A+ S + Y N+ GASGA+FGL +
Sbjct: 123 MWALYVVGPPLESALGRLRFTALYLAGALGGSVLVYLLAPLNAATAGASGAVFGLFAATL 182
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVG 292
V I R N+ +++ + +I+ N+ I + GI GH+G
Sbjct: 183 V-IGRRLNL------DVRWVLALIVINLVITFSVPGISWQGHIG 219
>gi|260583535|ref|ZP_05851283.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
gi|260158161|gb|EEW93229.1| rhomboid protease GluP [Granulicatella elegans ATCC 700633]
Length = 235
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 133 WTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAH 186
++N+ L + ++++I L+ +GA+ N+ +I ++WR T FLH + H
Sbjct: 19 FSNLFLLIQIIMFIIMTLKGGSTNPGILVYYGARANAFIIIFHEYWRFITPIFLHIGLEH 78
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+N L G +E I G R+L +Y S I + S+ F + GAS ++FGL G
Sbjct: 79 FAMNSLFLYFFGNQLESIVGHGRFLVIYLLSGIMGNLASFAFNAQHISAGASTSLFGLFG 138
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
RHR I + +Q++A +++ N+ L ID WGH+GGL+GG I+
Sbjct: 139 LMLYLSTRHRYIYAFKELGMQYMA-LLVMNLITSLFSSTIDLWGHLGGLVGGYVIA 193
>gi|262409313|ref|ZP_06085856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644959|ref|ZP_06722693.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294805963|ref|ZP_06764830.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
gi|345509393|ref|ZP_08788992.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|229446228|gb|EEO52019.1| hypothetical protein BSAG_03733 [Bacteroides sp. D1]
gi|262352765|gb|EEZ01862.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639680|gb|EFF57964.1| peptidase, S54 (rhomboid) family protein [Bacteroides ovatus SD CC
2a]
gi|294446845|gb|EFG15445.1| peptidase, S54 (rhomboid) family protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 584
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV+I A+ LL WGA L G +WR T F+H
Sbjct: 156 TPILIDLNILVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRAVTCNFIHIGAF 215
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLV 244
HL++N Y+ +G +E + G RR Y + + S+ S Y + + GASGAIFGL
Sbjct: 216 HLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETISAGASGAIFGLY 275
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 276 GIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|29347217|ref|NP_810720.1| hypothetical protein BT_1807 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339116|gb|AAO76914.1| conserved protein, with rhomboid family domain [Bacteroides
thetaiotaomicron VPI-5482]
Length = 586
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ S Y + + GASG+IFGL G F F++ HR K L + + +N
Sbjct: 249 TGLCSAVFSLYMHAETISTGASGSIFGLYGIFLAFLLFHRIERSQRKALLTSILIFVGYN 308
Query: 276 MAIGLLIKGIDNWGHV 291
+ G+ G+DN H+
Sbjct: 309 LIYGIR-AGVDNAAHI 323
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 13/173 (7%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WRL T FLH +
Sbjct: 184 FTYLLIAVQVVMFLLLELFGGSTNTAT---LTAFGAKNNGLILEGEWWRLMTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +YF S I S S+ F + A GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSWRFLLIYFISGIFGSIASFVFNTAIAAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ + +R + + ++ +I+ N+ IG + GIDN GH+GGL+GG
Sbjct: 301 GALLYLAISNRKLF--FRTMGTNIIVIILINLGIGFTVSGIDNAGHLGGLVGG 351
>gi|407641198|ref|YP_006804957.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
gi|407304082|gb|AFT97982.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
Length = 235
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 134 TNILLAVNVLVYIAQFA---------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L+AVNV ++ A D L W ++ D GQ+WR+ S FLH
Sbjct: 21 TYALIAVNVAIFAVTAAQAQSLLENRASDLFLRWVLYPPAVAD-GQWWRVLGSGFLHYGP 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
HL++N ++L IG E + G RYL VY S + +A F +S GASGA++GL
Sbjct: 80 IHLLLNMFALYVIGRDAELVLGRLRYLSVYLVSLLGGAAAVMVFAQDSATAGASGAVYGL 139
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ V ++R R + + +I N+ I + GI WGH+GGL G
Sbjct: 140 FGAITVILIRLR-------QNPNQMLILIAINVFISFSLPGISLWGHLGGLAAG 186
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-Y 226
KG++WRL T+ FLH + H+++N SL IG ME + YL +Y S + +S Y
Sbjct: 20 KGEWWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGLVSLY 79
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLLIKGI 285
S +GASGAIFG+ G+ A F + HR LG K ++ +I+ N+ IG I +
Sbjct: 80 IHPASVGIGASGAIFGVFGALAGFFIAHRKHLGKHTKAFMKEFTVIIVINLVIGFSIPNV 139
Query: 286 DNWGHVGGLLGGAAISWLL 304
D HV G + G +LL
Sbjct: 140 DVSAHVAGTVVGFIGGYLL 158
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 131 RQWTNILLAVNVLVYIA---QFATQDKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R +T IL+ +NV V+IA + + L L GA + + GQ++RL TS F H
Sbjct: 82 RLFTKILIGINVAVFIAIQAKASLATDLSLVGAWPPAPFQPTEGVADGQYYRLVTSMFAH 141
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGA 239
I H+ N SL +G +E G RYL VYF S +A A++Y ++ +GASGA
Sbjct: 142 QEIWHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGGALAYLLASPSTATLGASGA 201
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
IFGL G+ AV +MR N +L+ + +++ N+ GI H+GGL+ G
Sbjct: 202 IFGLFGATAV-LMRRLNY------DLRPIIALLVINLIFTFSWSGISWQAHIGGLVAG 252
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +NV++++ ++ KLL G ++ + G+++RL +S FLH N H++
Sbjct: 160 TYTLIGINVIIWLLMILFFNRFSELKLLDVGGLVHFNVVHGEWYRLISSIFLHYNFEHIL 219
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R L ++ S + ++ S F ++ +VGASGAIFGL+GS
Sbjct: 220 MNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFASLSFNIDTISVGASGAIFGLIGSL 279
Query: 248 AVFI----MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
F+ + R ++G Q L ++I + I L + I+ W H+GG +GG I+
Sbjct: 280 FGFMYISKIFERKLVG------QLLIALVIL-IGISLFMDNINVWAHIGGFIGGLFIT-- 330
Query: 304 LGPALKYEFTSD 315
L Y FT++
Sbjct: 331 ---LLAYYFTAN 339
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus salivarius
UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIVMTLFGGTENIANLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ R LQ +++ ++I N+ G+ D GH+GGL+ G + ++
Sbjct: 132 LMLGESFRR-----NPYLQTMSRQFFLLVILNIFFGMFGNS-DLAGHLGGLVSGFLLGYV 185
Query: 304 LG 305
+G
Sbjct: 186 VG 187
>gi|14520881|ref|NP_126356.1| hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
gi|5458098|emb|CAB49587.1| Membrane protein, rhomboid protein homolog [Pyrococcus abyssi GE5]
gi|380741425|tpe|CCE70059.1| TPA: hypothetical protein PAB1920 [Pyrococcus abyssi GE5]
Length = 212
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 16/178 (8%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
I+ AV + I F D+ +L A+IN L+ +GQ+WRL T+ FLH H +N + L
Sbjct: 34 IITAVFIYEVIVGF---DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLF 90
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGS-FAVFI 251
+G +E I G +R+L V+F+SA+A + +S F P + GASG +FG+VG+ ++
Sbjct: 91 YLGTDLEGIVGTKRFLIVFFASALAGNVLSL-FTLDPRIASGGASGGLFGIVGALLSIEG 149
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ RNI K + LA +I ++ G++ + H GGL+ G + + G LK
Sbjct: 150 VLRRNI---QKALINALALFLINSI-----FPGVNIFAHFGGLVTGLVLGYFYGIWLK 199
>gi|383125162|ref|ZP_09945818.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
gi|251838549|gb|EES66635.1| hypothetical protein BSIG_4372 [Bacteroides sp. 1_1_6]
Length = 586
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFATQD--------KLL 156
T + + S +++ + FI R+ T +L+ +N+LV+I AT LL
Sbjct: 129 TEEERRLQAESEKESSFIHFFIPRKGFIATPVLIDINILVFILMAATGAGILEPSTLALL 188
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
WGA L G +WR T F+H HL++N Y+ IG +E + G RR Y
Sbjct: 189 NWGADFGPLTLTGDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLIGTRRMFVSYLL 248
Query: 217 SAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ + S+ S Y + + GASG+IFGL G F F++ HR K L + + +N
Sbjct: 249 TGLCSAVFSLYMHAETISAGASGSIFGLYGIFLAFLLFHRIERSQRKALLTSILIFVGYN 308
Query: 276 MAIGLLIKGIDNWGHV 291
+ G+ G+DN H+
Sbjct: 309 LIYGIR-AGVDNAAHI 323
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 18/176 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDK--------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L+AVNV+++ A Q K L G + + + G++WRL T+ FLH +A
Sbjct: 10 TYALIAVNVVIF-ALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVA 68
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGL 243
H+ +N SL +G +E G RYL VYF + SA M + N + GASGAI+GL
Sbjct: 69 HIALNMISLYILGRDLEAALGLGRYLMVYFVALFGGSAAVMLFEAGNVRSAGASGAIYGL 128
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
+G+ V +++ R + +I+ N+ + + GI HVGGL+ GAA
Sbjct: 129 MGAVLVVVLKAR-------VSPTGVITIIVINLVFSVTMPGISLAAHVGGLVFGAA 177
>gi|88800271|ref|ZP_01115838.1| hypothetical protein MED297_14685 [Reinekea blandensis MED297]
gi|88776986|gb|EAR08194.1| hypothetical protein MED297_14685 [Reinekea sp. MED297]
Length = 209
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 14/179 (7%)
Query: 130 GRQWTNILLAVNVLVYIA---------QFATQDKLLLW-GAKINSLIDKGQFWRLATSAF 179
G + + +L+ + LV++A Q++ Q L W GA + +D GQ+WRL TS F
Sbjct: 9 GYKISPLLVLIYGLVFVAMSIMNLSFTQYSIQS--LYWLGANFSPWVDAGQWWRLGTSIF 66
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASG 238
+H + HL+ N S +G +E + G ++ V+ ++ + +S SY F + GASG
Sbjct: 67 VHFGLMHLVFNSVSTLFLGRFLEPLLGHVAFIVVFLTTGLCASMASYVFNKEVYSAGASG 126
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
A+FGL G F V ++ + E L+ + +++ N+ +GL++ +DN H+GGL G
Sbjct: 127 AVFGLFGLFIVLVLSNLVRPEVRNEWLKSIGVILVINLGMGLVLP-VDNAAHLGGLASG 184
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI-------NSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ A L + + + I GQ+WRL TS FLH ++ H
Sbjct: 44 TYALIAINVVVFAICIAEAGGLQVLNSPLFLDWSLYKPAIADGQYWRLFTSGFLHLSVIH 103
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ N +L +G +E G RY+ VY +S SA F + AV GASGAI+GL+
Sbjct: 104 IAGNMLALYILGRDLELALGIPRYVAVYVTSLFGGSAFVMLFESDTAVTAGASGAIYGLM 163
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
G+ V +++ R + +I N+ + + I GI W H+GGL+ GA
Sbjct: 164 GAILVVLLKAR-------LSPVPVLSIIGLNIVLSIAIPGISIWAHIGGLVFGA 210
>gi|242040475|ref|XP_002467632.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
gi|241921486|gb|EER94630.1| hypothetical protein SORBIDRAFT_01g031210 [Sorghum bicolor]
Length = 335
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 104 ATLQKLGALVW----DKVVQEHQGWRLVTCIWLHAGVAHLLANMVSLVLIGLRLEQQFGY 159
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 160 VRIGIIYLVSGVGGSVLSSLFVRNTISVGASGALFGLLGAMLSELFTNWTIYSNKAAALV 219
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L VI N+AIG+L +DN+ H+GG L G
Sbjct: 220 TLLIVIAINLAIGIL-PHVDNFAHIGGFLTG 249
>gi|423216154|ref|ZP_17202679.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691005|gb|EIY84256.1| hypothetical protein HMPREF1074_04211 [Bacteroides xylanisolvens
CL03T12C04]
Length = 584
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 126 NLFIGRQ---WTNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRL 174
+ FI R+ T IL+ +N+LV+I A+ LL WGA L G +WR
Sbjct: 145 SFFIPRKGFMATPILIDLNLLVFIVMIASGVGIMSPSTLSLLKWGADFGPLTLTGDWWRA 204
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPA 233
T F+H HL++N Y+ +G +E + G RR Y + + S+ S Y + +
Sbjct: 205 VTCNFIHIGAFHLLMNMYAFMYVGLLLEGLIGSRRMFMSYLLTGLCSAVFSLYMHGETIS 264
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GASGAIFGL G F F+ HR K L + + +N+ G+ GIDN H+
Sbjct: 265 AGASGAIFGLYGIFLAFLFFHRIAKEQRKALLTSILIFVGYNLVYGMK-AGIDNAAHI 321
>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana]
gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana]
gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana]
gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein
[Arabidopsis thaliana]
Length = 434
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GAKIN LI G++WRL T FLH+ I H+ ++ ++L + GP + + G + +Y
Sbjct: 216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275
Query: 216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
++ + MS+ P VG +G F L+G++ V +++ ++ E + L + I
Sbjct: 276 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMI--KSNEYEDLFQKAIIM 333
Query: 276 MAIGLLIK---GIDNWGHVGGLLGGAAISWLLGPALK 309
GL++ ID+W ++G L+ G + P L+
Sbjct: 334 TGFGLILSHFGPIDDWTNLGALIAGIVYGFFTCPVLQ 370
>gi|153808412|ref|ZP_01961080.1| hypothetical protein BACCAC_02706 [Bacteroides caccae ATCC 43185]
gi|149128734|gb|EDM19951.1| peptidase, S54 family [Bacteroides caccae ATCC 43185]
Length = 584
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y + + S+A S Y + + GASGAIFGL G F F++ H K L +
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFHHIPRAQRKALLISILL 303
Query: 271 VIIFNMAIGLLIKGIDNWGHV 291
+ +N+ G+ GIDN H+
Sbjct: 304 FVGYNLVYGMK-AGIDNAAHI 323
>gi|423219507|ref|ZP_17206003.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
gi|392625402|gb|EIY19471.1| hypothetical protein HMPREF1061_02776 [Bacteroides caccae
CL03T12C61]
Length = 584
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%)
Query: 103 FNGGGTRKNSGHEGTSHLDTARTNLFIGRQ---WTNILLAVNVLVYIAQFA--------T 151
FN T + + ++ + FI R+ T IL+ +N+L++I A +
Sbjct: 124 FNRPLTEEEEAYLKEIEKKSSFISFFIPRKGFIATPILMDLNLLIFILMVAFGVGILEPS 183
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA L G +WR T F+H HL++N Y+ IG +E + G RR
Sbjct: 184 TLALLKWGADFGPLTLTGDWWRAITCNFIHIGAFHLLMNMYAFMYIGLWLEDLIGTRRMF 243
Query: 212 GVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y + + S+A S Y + + GASGAIFGL G F F++ H K L +
Sbjct: 244 ISYLLTGVCSAAFSLYMHAETISAGASGAIFGLYGIFLAFLLFHHIPRAQRKALLISILL 303
Query: 271 VIIFNMAIGLLIKGIDNWGHV 291
+ +N+ G+ GIDN H+
Sbjct: 304 FVGYNLVYGMK-AGIDNAAHI 323
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 9/149 (6%)
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
WG +N + G++WRL T FLHA AH + N +SL GP +E++ G +++ +Y +
Sbjct: 46 WGMGVNVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFA 105
Query: 218 AIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
IA + + F P+ +GASGAIFG+ G + + ++++ ++ + ++
Sbjct: 106 GIAGNVGT--FIVDPSAYYAHLGASGAIFGIFGVYIFMVWNRKHLIDQANSQI--IGVIV 161
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ + + I+ GH+ GL+GG AI+
Sbjct: 162 ALGLFMTFVRPNINILGHLFGLIGGFAIA 190
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T L+AVNVLV++ Q + + ++ D G+F+RL TSAFLH + H++ N ++
Sbjct: 39 TYTLIAVNVLVFLLQAVLPGFTREFVLQPYAVAD-GEFYRLLTSAFLHYGLTHILFNMWA 97
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L +GP +E G R++G+Y SA+ S + Y N+ GASGAIFGL G A F+
Sbjct: 98 LYVVGPALEAALGRLRFVGLYALSALGGSVLVYLLSAPNAATAGASGAIFGLFG--ATFV 155
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGL---LIKG--IDNWGHVGGLLGG 297
+ R +++ +A +I+ N+ LI G I GH+GGL G
Sbjct: 156 VGKRL-----NMDVRWVAAIIVINLVFTFVFPLISGQAISWQGHLGGLFTG 201
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 137 LLAVNVLVYIAQFATQDKLLL-----------WGAKINSLID-KGQFWRLATSAFLHANI 184
L+ +NVLV+I + LL GA ID GQF+R T+ FLH N
Sbjct: 23 LIVLNVLVFIIMMINRYTNLLTDLLNGYTLIQLGAIQTYTIDATGQFYRFLTAMFLHGNF 82
Query: 185 AHLMVNC-YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
H++ N + L +G +E + G R+ VYF + IASS Y + VGASGAI+
Sbjct: 83 LHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASSYGVYLLSGPYTVTVGASGAIY 142
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G++G I+ + ++ +L +A++II N+ + ++ GI GH+ GL+ G I+
Sbjct: 143 GILGVLLFMIVFKKTLVPYNDRKL--IAQLIILNVILSFVLSGISLEGHLSGLIAGFLIA 200
Query: 302 WLL 304
LL
Sbjct: 201 PLL 203
>gi|347533424|ref|YP_004840187.1| Rhomboid family protein [Roseburia hominis A2-183]
gi|345503572|gb|AEN98255.1| Rhomboid family protein [Roseburia hominis A2-183]
Length = 394
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNI--------LLAVNVLVYIAQFATQDK-----LL 156
+++G S +TA+ L G W NI L+ VNV+ Y+ D +
Sbjct: 177 QDTGTAYASAQNTAKNRL--GILWKNIRAEYVTIALVTVNVITYLVLEWLGDTTNGFFMA 234
Query: 157 LWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
GA I ++WR+ ++ FLH HL+ N L +G +E++ G +Y +Y
Sbjct: 235 EHGAMYPDFIRINHEWWRIISAGFLHFGAVHLVNNMVILYCMGSRLERVTGHLKYFLIYL 294
Query: 216 SSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL--QHL 268
S I + +SY + + GASGAIFG++G F ++ HR G E++ + +
Sbjct: 295 VSLIGAGLLSYGMMLRTGDYAVSAGASGAIFGVIGGFLWIVILHR----GRFEQITTRGI 350
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+I+ + G GIDNWGH+GGLL G A + +L
Sbjct: 351 MMMIVLTIYYGFSSAGIDNWGHIGGLLAGFAATVIL 386
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLL-LWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T IL+ +N++V++ +T ++L ++GAK + +G++WRL + FLH I HL
Sbjct: 24 TYILIGINLVVFMGTVFAGGSTDIRVLYMFGAKFTPALLQGEWWRLIAAMFLHDGIGHLF 83
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF 247
+N +L IGP +E G R L +Y S + + +S + + AVGASGA+FGL G++
Sbjct: 84 INMITLYFIGPEIEDHYGHARMLVIYLLSGLYGNLLSAFWAPTTLAVGASGALFGLFGAY 143
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ H++ + + + +I N+ +G D GHVGGL+ G ++
Sbjct: 144 --LILGHQSTDAQIQAQARQFLLFVILNVVLG-FSGNTDLAGHVGGLIAGCLVT 194
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
M + + K+ L L ++ + + L + I+ H+GG +GG I+
Sbjct: 282 MMYVS-KTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIGGFIGGLLIT 330
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K+ L L ++ + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVS-KTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K+ L L ++ + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVS-KTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|284028038|ref|YP_003377969.1| Rhomboid family protein [Kribbella flavida DSM 17836]
gi|283807331|gb|ADB29170.1| Rhomboid family protein [Kribbella flavida DSM 17836]
Length = 246
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 145 YIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
+IA A L+ + L+D + WRL TSAF H I H+ N + L +GP +E++
Sbjct: 80 FIAVRAGNSTLVYDLVLVPVLVDS-EPWRLFTSAFTHLQIFHIFSNLFMLYQVGPLLEQM 138
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGK 262
G R++ +YF SA+ S + N S +GASGA+ GLVG+ V I R R G
Sbjct: 139 LGRLRFVLLYFLSALGGSIAVWLLANPVSSTLGASGAVLGLVGALLV-ISRAR-----GM 192
Query: 263 EELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ LA V I I L I GH+GG L GAAI+WL
Sbjct: 193 DVTWILAYVAI-TAVISFLFPNISWQGHLGGFLAGAAIAWL 232
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 134 TNILLAVNVLVYIAQ--FATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ +N+++YI F + L+ +GAK + I GQ+WRL T F+H + HL+
Sbjct: 12 TYTLIILNIVMYIIMTLFGGTENIVNLVRFGAKYSPYIINGQYWRLITPMFIHIGLQHLL 71
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N +L +G +E I G R+L +Y S I + S+ F +S + GAS A+FG+ GSF
Sbjct: 72 INMITLYFLGTLLENIFGKTRFLIIYLVSGICGNIASFAFNFSSISAGASTALFGMFGSF 131
Query: 248 AVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ R LQ +++ ++I N+ G+ D GH+GGL+ G + ++
Sbjct: 132 LMLGESFRR-----NPYLQTMSRQFFLLVILNIFFGMFGNS-DLAGHLGGLVSGFLLGYV 185
Query: 304 LG 305
+G
Sbjct: 186 VG 187
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLID-----KGQFWRLATSAFLHAN 183
T IL+ + Y+ Q A D L+ A + D +GQ +RL TS FLH +
Sbjct: 85 TKILIGACLAAYLVQMAVGDSFTDNFSLIGQAYVPHFGDVEGVAEGQSYRLLTSMFLHGS 144
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ HL+ N SL +G +E G RYL +YF S +A SA++Y N+ +GASGAIF
Sbjct: 145 VIHLLFNMLSLWWLGGPLEAALGRARYLALYFVSGLAGSALAYLLAEPNTATLGASGAIF 204
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GHVGGLLGGAAI 300
GL G+ AV + R + + + LA +IF + G I +W H+GGL+ G I
Sbjct: 205 GLFGATAVLMRRLNYDM---RPIIALLAINLIFTFSPGFNI----SWQAHIGGLVAGVVI 257
Query: 301 SW 302
+
Sbjct: 258 GY 259
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ILL + + V+ FA + K L G N L+ +G++WRL T FLHA ++H + N ++L
Sbjct: 25 HILLWLIMDVFSFPFAVEWKQL--GVGNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGLVGSFAV 249
GP +E++ G +++ Y + IA + +Y P +GASGAIFGL G +A
Sbjct: 83 VLFGPALERMLGKVKFIIAYLLAGIAGNIGTY--AADPGAFHSHLGASGAIFGLFGIYAY 140
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ +++L ++ + I+ + + L I+ GH+ G +GG A++
Sbjct: 141 MLFARKDLLDQASSQI--IGVFIVLGLIMTFLQPNINVLGHLFGFIGGLALA 190
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFS-DVKLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 220
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 221 MMYVSKTFNKKMLGQLLISLVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 276
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 113 GHEGTSHLDTA-RTNLFIG-------RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
G GT H +A R G R T IL+ +NV V++A + + L L GA
Sbjct: 57 GGGGTGHAPSASRPRTLAGGSVAADPRLITKILIGINVAVFLAVWVEKSLLADLYLVGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++RL TS F H I H+ N SL +G +E+ G RYL +Y
Sbjct: 117 PPAPFTPTQGVADGEWYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQHLGRARYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
S +A SA++Y + ++GASGA+FGL G+ AV + R R +++ + +++
Sbjct: 177 ISGLAGSALTYLLAGGGTASLGASGAVFGLFGATAVLMRRLRY-------DMRPIVALLV 229
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+ I GI H+GGL+ G I + +
Sbjct: 230 INLVITFGWSGIAWQAHIGGLVAGVVIGYAM 260
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLISLVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 265 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 320
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 148 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 206
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 207 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 264
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 265 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 320
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|449452364|ref|XP_004143929.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449495860|ref|XP_004159966.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 327
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
K N ++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y + +
Sbjct: 106 KWNKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVG 165
Query: 221 SSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S MS F N+ +VGASGA+FGL+G+ ++ + I L L +++ N+A+G
Sbjct: 166 GSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINLAVG 225
Query: 280 LLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAP 326
+L +DN+ H+GG L G + ++L ++++T + R P
Sbjct: 226 IL-PHVDNFAHIGGFLTGFLLGFVLLVRPQFKWTERHHLPPGARRVP 271
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|325663211|ref|ZP_08151661.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470665|gb|EGC73895.1| hypothetical protein HMPREF0490_02402 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 209
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 13/188 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S++++G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEEGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLAVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
++G+ +R+R +G + LA +++ ++ +G KG+DN H+GG++ G ++
Sbjct: 130 VIGALFYVALRNRGRIGNISS--RGLAFMVLCSLYLGFTSKGVDNSAHIGGVISGILLAA 187
Query: 303 LLGPALKY 310
+L KY
Sbjct: 188 ILYHKKKY 195
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 104 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 162
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 163 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 220
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
M + + K Q L ++I + + L + I+ H+GG +GG I+ +
Sbjct: 221 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLITLI 271
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I G++WRL T LH+ +H++ N +SL GP +E+I G ++++ +YFSS I
Sbjct: 47 AGVNLYIAAGEYWRLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
A++ + F P VG+SGAIFGL G + I+ +++L K+ Q + + +
Sbjct: 107 AANIAT--FLIKPLTFIHVGSSGAIFGLFGFYIAIILFKKHLL--SKQNTQIILTISAIS 162
Query: 276 MAIGLLIKGIDNWGHVGGLLGGAAI 300
+ + + I+ H+ GL+ G I
Sbjct: 163 LIMTFVQDNINVTAHIFGLITGIVI 187
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------------LWGAKINSLIDKGQFWRLATSAF 179
T +L+AVNV ++ A A Q + + LWG + + G+F R+ TS F
Sbjct: 86 TYVLIAVNVAIF-AVTAVQSRSVMDNHVASPLFLDWVLWGPAVAA----GEFSRIVTSGF 140
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASG 238
LH + HL VN ++L IG E + G RY VY + + SA P GASG
Sbjct: 141 LHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSASVLMLDPLVPTAGASG 200
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
AIFGL+G+ AV ++R K + VI N+ I + I GI WGH+
Sbjct: 201 AIFGLLGAQAVILLRL-------KRSPTPVLAVIAINVIISITIPGISLWGHM 246
>gi|195652545|gb|ACG45740.1| membrane protein [Zea mays]
Length = 334
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL------GPALKYEFTSD 315
L VI N+AIG+L +DN+ H+GG L G + ++L G +Y SD
Sbjct: 219 TLLVVIAINLAIGIL-PHVDNFAHIGGFLTGFLLGFVLLMRPHYGWMQRYALPSD 272
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|212722852|ref|NP_001132594.1| uncharacterized protein LOC100194066 [Zea mays]
gi|194694850|gb|ACF81509.1| unknown [Zea mays]
Length = 248
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINLAIGIL 147
Query: 282 IKGIDNWGHVGGLLGGAAISWLL------GPALKYEFTSD 315
+DN+ H+GG L G + ++L G +Y SD
Sbjct: 148 -PHVDNFAHIGGFLTGFLLGFVLLMRPHYGWMQRYALPSD 186
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLL------- 156
+G G ++ H T T T+ R T +L+ VN+LV++ Q + D+
Sbjct: 58 SGTGHAPSASHPRTIAGGTVTTD---PRLLTKLLVGVNLLVFLVQLSLGDRFTDRFDLIG 114
Query: 157 -LWGAKINSLID---KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
W ++ S + +GQ++RL TS FLH ++ H+ N SL +G +E G RY+
Sbjct: 115 RAWVPELGSTLQGVAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIA 174
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+YF S +A A++Y N ++GASGAIFGL G+ AV + R K +++ +
Sbjct: 175 LYFVSGLAGGALTYLLAAPNQASLGASGAIFGLFGATAVLMRRL-------KYDMRPVVI 227
Query: 271 VIIFNMAIGLLIKGI 285
+++ N+ I GI
Sbjct: 228 LLVINLIITFGWSGI 242
>gi|414867422|tpg|DAA45979.1| TPA: membrane protein [Zea mays]
Length = 334
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 103 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 158
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 159 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 218
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL------GPALKYEFTSD 315
L VI N+AIG+L +DN+ H+GG L G + ++L G +Y SD
Sbjct: 219 TLLVVIAINLAIGIL-PHVDNFAHIGGFLTGFLLGFVLLMRPHYGWMQRYALPSD 272
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ L+ GQ++R+ T+ F+H HL+ N Y+L +G +E + G ++L YF
Sbjct: 35 LLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYF 94
Query: 216 SSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
S+ I + A + + NS +VGASGAIFGLVG R +I+
Sbjct: 95 STGIIGNLATQFFYYNSFSVGASGAIFGLVGVLFAAGFRRDTPYTLKPITGTAFLPMILV 154
Query: 275 NMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFS 322
N+ +G + I+N H+GG L G A+ + + P +Y + ++I S
Sbjct: 155 NIFLGFIPGSNINNAAHLGGFLSGMALGYFI-PIYEYSWNIRKLWKILS 202
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +F
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGS--IFA 281
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
M + + K Q L ++I + + L + I+ H+GG +GG I+ L+G K
Sbjct: 282 MMYVSKTFNKKMLGQLLIALVIL-VGVSLFMSNINIVAHIGGFIGGLLIT-LIGYYYK 337
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +GQ++RL T+ FLH + HL++N ++L +G ++E GP R+ +Y + + + +
Sbjct: 134 IAEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F NS GAS A+FGL FA I+ R + ++ + +++ N+ L +
Sbjct: 194 YLFSAQNSATAGASTAVFGL---FAALIIIERKL----GRDISQVIPILVINLVFTLTVP 246
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
GI GH+GGL+ GAA+S +L
Sbjct: 247 GISIPGHLGGLVVGAAMSLVL 267
>gi|427392549|ref|ZP_18886554.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
gi|425731229|gb|EKU94048.1| hypothetical protein HMPREF9698_00360 [Alloiococcus otitis ATCC
51267]
Length = 228
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 16/170 (9%)
Query: 153 DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ +GAK N ++I Q+WRL T FLH +AH++ N + +G +E G +Y
Sbjct: 41 EVLIQYGAKFNFAIIYFNQWWRLITPMFLHIGLAHILFNLLIVYYLGSNLEYFFGHFKYA 100
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK- 270
+Y I + S+ F S + GAS AIFGL S + N + ++Q++A
Sbjct: 101 LLYLLGGIMGNIFSFAFNISISAGASTAIFGLFMSTIALSRIYPN-----RIQIQNIASQ 155
Query: 271 ---VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL------GPALKYE 311
+I N+ IG+L GIDN GH+GGL+GG ++++ G LKY
Sbjct: 156 YGLLIGLNIFIGILSTGIDNMGHLGGLVGGYLATYMITKTHNPGSQLKYT 205
>gi|414867424|tpg|DAA45981.1| TPA: hypothetical protein ZEAMMB73_979905 [Zea mays]
Length = 254
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G R +Y S + S
Sbjct: 28 DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGYVRVGIIYLVSGVGGS 87
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 88 VLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALVTLLVVIAINLAIGIL 147
Query: 282 IKGIDNWGHVGGLLGGAAISWLL------GPALKYEFTSD 315
+DN+ H+GG L G + ++L G +Y SD
Sbjct: 148 -PHVDNFAHIGGFLTGFLLGFVLLMRPHYGWMQRYALPSD 186
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T KL+ GA + + G++ RL TS FLH N H++ N SL G +E I G R
Sbjct: 182 TDLKLIDLGALAHFNVVHGEWHRLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRM 241
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSF-AVFIMRHRNILGGGKEELQHL 268
GVY S I + ++ F ++ ++GASGAIFGL+GS A I+ + + + L
Sbjct: 242 FGVYMLSGIIGNLVTLAFSPDTFSLGASGAIFGLIGSLIACMIISQK----FDQRTIGQL 297
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++ + I L I I+ H+GGLLGG +++L
Sbjct: 298 LLALLIMVVISLFISNINVLAHIGGLLGGVLVTFL 332
>gi|357155676|ref|XP_003577199.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 383
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA ++ ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 106 LLKMGALDVSKIVQGRQGWRLITCIWLHAGVVHLLINVLCLLFIGIRLEQEFGFVRIGLV 165
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 166 YLISGFGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 225
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
+ N+A+G+L + +DN+ H+GGL+ G
Sbjct: 226 VVNLALGILPR-VDNFAHIGGLISG 249
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 22/178 (12%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGGAAIS 301
F++ R N+ +++ + +I+ N+A LI + I GH+GGL+ GA ++
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNLAFTFLIPLFTSQNISWQGHIGGLVTGALVA 235
>gi|225375145|ref|ZP_03752366.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
gi|225213019|gb|EEG95373.1| hypothetical protein ROSEINA2194_00769 [Roseburia inulinivorans DSM
16841]
Length = 357
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLW--GAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T ++ N+LVYI AT+D + GA + Q+WRL T+ FLH +AHL
Sbjct: 170 TGLIALANILVYIILSFGGATEDAFYMASRGAMYPEFLTINHQWWRLLTAMFLHFGVAHL 229
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GASGAIFG 242
M N +G +EK G + VYF++ I +SY + AV GASGA+FG
Sbjct: 230 MNNMVIFCCVGSRLEKYIGHWKMAVVYFAAGIGGGLLSYIMMLLSGNYAVSGGASGAVFG 289
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
++G ++ HR L G + + +I+ ++ G G+DNW HVGG+L G
Sbjct: 290 VIGGLLWVVIYHRGKLEG--MTTKGILIMIVLSLYFGFTSIGVDNWCHVGGMLCG 342
>gi|115483002|ref|NP_001065094.1| Os10g0521900 [Oryza sativa Japonica Group]
gi|113639703|dbj|BAF27008.1| Os10g0521900, partial [Oryza sativa Japonica Group]
Length = 338
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 107 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 162
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 163 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 222
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L VI N+AIG+L +DN+ H+GG L G
Sbjct: 223 TLLIVIAINLAIGIL-PHVDNFAHIGGFLTG 252
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T L +NV VY+ + L L G ++++ G +W+L T+ F+H NI
Sbjct: 14 TFTLFLINVAVYVVEAVLSGGNFLSIRGSVLALLGQWNYAVLNYGYWWQLFTAMFVHVNI 73
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIF 241
H+ N Y L ++G +E++ GPRR + Y S + + ++ F P + GASGA+F
Sbjct: 74 IHIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGNVLT-LFLKPPMTVSAGASGALF 132
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
G+VG+ ++ ++GG + A F I ++ G++ + H+GGLL G AI
Sbjct: 133 GIVGA----LITISGVVGGNMQAAMMNA---FFLFLINSVLPGVNAYAHLGGLLAGIAIG 185
Query: 302 WLLGPALKYEFT 313
+ G ++ T
Sbjct: 186 YYYGKVIRRRLT 197
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 137 LLAVNVLVYIAQFATQDKL------LLWGAKINSLID--KGQFWRLATSAFLHANIAHLM 188
L+AVNV V++ T L L+G + +D GQ WRL T+ FLH HL
Sbjct: 48 LIAVNVAVFVLTVVTAGSLNRNFDSPLFGLGALTPVDVADGQLWRLVTAGFLHIGPLHLA 107
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLVGS 246
N ++L IG +E + G R+ VY S + SA N P GASGA+FGL+G
Sbjct: 108 FNMFALWVIGREVEAVLGRARFTAVYGVSLLGGSAAVMLLSNPLGPTAGASGAVFGLMG- 166
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
A+F++ R L G+ + VI N+ I ++GI GH+GGL+ GAA++
Sbjct: 167 -ALFVLLRRLRLPAGQ-----VIGVIAINVVISFTLQGISWQGHLGGLVFGAAVT 215
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 18/197 (9%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
NS + GASGAIFG++G + + ++RN + G G++ L A I+ G+ I
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIV----SGMFGTNI 176
Query: 286 DNWGHVGGLLGGAAISW 302
D + H+GGL+ G + +
Sbjct: 177 DIFAHLGGLVAGFLLGY 193
>gi|294501246|ref|YP_003564946.1| membrane endopeptidase [Bacillus megaterium QM B1551]
gi|294351183|gb|ADE71512.1| membrane endopeptidase [Bacillus megaterium QM B1551]
Length = 506
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 180 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPVILHIGLLHL 239
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 240 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 299
Query: 248 AVFIMRHR-----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+FI R +G +I+ N+ G + +DN GH+GGL+GG
Sbjct: 300 -LFIARTNPRFFFRTMGSS------FIVIIVINLIFGFVAPNVDNAGHIGGLVGG 347
>gi|125575434|gb|EAZ16718.1| hypothetical protein OsJ_32194 [Oryza sativa Japonica Group]
Length = 253
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 152 QDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++L GA + + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R
Sbjct: 21 EERLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRI 80
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y S I S +S F NS +VGASGA+FGL+G+ + + I L L
Sbjct: 81 GIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLL 140
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
VI N+AIG+L +DN+ H+GG L G
Sbjct: 141 IVIAINLAIGIL-PHVDNFAHIGGFLTG 167
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 34/206 (16%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-------QDKLLL-WGAK 161
+N+ E S L+ R G T +L+++N V+I + Q LLL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHLLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S S + ++ +VGASGAI GL G +++ + + AK I F ++I +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK------------RVFAKEIHFILSINV 470
Query: 281 LI-----------KGIDNWGHVGGLL 295
I G+DN H+GG +
Sbjct: 471 AIFVTASVVSGFLGGVDNAAHIGGFV 496
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 131 RQWTNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
RQ ++ ++ ++ +A + Q LL+GA+ L+D+G++WR+ T+ F+H
Sbjct: 12 RQLYMYIIMIDSIILLAFYVVQTFFVSEPYAYLLFGAQYGPLVDQGEWWRIVTAMFMHGG 71
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL N Y+L +G E I G R+L + + IA + ++ F +S +VGASGAIFG
Sbjct: 72 FLHLAFNMYALYILGSYAEGIYGTYRFLSYFILTGIAGNIATHFFYHDSLSVGASGAIFG 131
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHV 291
LVG+ R L +II N+A+G + GI+N H+
Sbjct: 132 LVGALFAAGFRKDTPFFLKPITGSALLPMIILNVALGFIPGSGINNAAHI 181
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|194688302|gb|ACF78235.1| unknown [Zea mays]
Length = 336
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA +AHL+ N SL IG +E+ G
Sbjct: 105 ATLQKLGALVW----DKVVREHQGWRLVTCIWLHAGVAHLLANMISLVLIGLRLEQQFGY 160
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N+ +VGASGA+FGL+G+ + + I L
Sbjct: 161 VRVGIIYLVSGVGGSVLSSLFIRNNISVGASGALFGLLGAMLSELFTNWTIYANKAAALV 220
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L VI N+AIG+L +DN+ H+GG L G
Sbjct: 221 TLLVVIAINLAIGIL-PHVDNFAHIGGFLTG 250
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|284047014|ref|YP_003397354.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283951235|gb|ADB53979.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 228
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 135 NILLAVNVLVYIAQFA------TQDKLLLWGAKINSL-IDKGQFWRLATSAFLHANIAHL 187
+L+A+NV + Q A T D L +N +D G ++R+ TSAFLHAN AHL
Sbjct: 25 GVLVALNVGAFAIQLASSPFDDTLDGSLAEHGGLNGWEVDHGDWYRIFTSAFLHANAAHL 84
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGS 246
N +L +G + GP R + VY + + S+ F + VGASGAIFGL G
Sbjct: 85 FGNLVALVILGGVLTLAAGPLRMVLVYATGLLGSAFSVLAFAPETLTVGASGAIFGLAGG 144
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
V R R +L L A ++ ++ L + GI GH+GGL+ G WLL
Sbjct: 145 ALVVGWRQRRVL-----LLIFAAGWTVYALSSTLFVPGISQAGHLGGLVAGGIAGWLL 197
>gi|302782513|ref|XP_002973030.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
gi|300159631|gb|EFJ26251.1| hypothetical protein SELMODRAFT_413432 [Selaginella moellendorffii]
Length = 432
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 134 TNILLAVNVLVYIAQFAT-------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ ++ +N+ VYI AT D L GAK+N LI G++WRL T FLH+ + H
Sbjct: 227 VSTIVGINIGVYIFGLATTQQTENGMDLAFLQGAKVNDLIVAGEWWRLITPTFLHSGLLH 286
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L ++C++ S GP +E + G + +Y + S+ + P VG +GA+F ++ S
Sbjct: 287 LFLSCWATISFGPLVESLYGSIGLVLIYLLGGAMGNVASFLQTSQPTVGGTGAVFAMICS 346
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG---IDNWGHV 291
+ +F+++++ + + + L KV++ + + +L+ +D W HV
Sbjct: 347 WIIFLVKNKEAV-RTFDTGELLQKVLVLS-GLTVLVGNELPVDAWTHV 392
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 11/174 (6%)
Query: 134 TNILLAVNVLVYIAQFAT--QDKLLLWG-AKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
+I++ +NVL+Y ++LL A IN I +G++WRL T LH+ H++ N
Sbjct: 18 VSIIVGLNVLLYFFTILPIFPNRLLFEKLAGINLYIAEGEYWRLVTPILLHSGFPHMLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
+SL GP +E+I G +++ +YFS+ IA++ + F P VG+SGAIFGL G
Sbjct: 78 SFSLILFGPALERIIGKNKFVILYFSTGIAANIAT--FFVKPLTFIHVGSSGAIFGLFGF 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ + +++L K+ Q + + ++ + + I+ H+ GL+ G I
Sbjct: 136 YIAMTLFKKHLL--SKQNTQIILTITAISLIMTFVQPNINVIAHIFGLIAGIII 187
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 137 LLAVNVLVY--IAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +NV+V+ + L+ A + +SL+D GQ++ L TS FLH + HL+ N
Sbjct: 14 LIVINVVVFAVLEVLGMTQGYTLYNAGVLTTSSLLD-GQYYTLITSMFLHGGLMHLLCNM 72
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGS 246
++ IG +E + GP R+L +YF S IA S N VGASGA+FGL G+
Sbjct: 73 ITMYYIGTVIEDVFGPVRFLIIYFLSGIAGGLTSMAVMIAAGENGGVVGASGALFGLFGA 132
Query: 247 FAVFIMR-HRNIL----GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ ++R HR + +L+ ++ N+ IG L GI H+GG++ G
Sbjct: 133 YGYLLVREHRKPVVFMRPTSSSDLKGFFGFLVLNIIIG-LTPGIAMEAHIGGMICG 187
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRL 174
ART L G+ + T L+ +N+LV+ +AQ D + G + S + G++WRL
Sbjct: 59 ARTRLSEGKPYVTYTLIGINILVFLLCVAQAGFGDPGAATIFSSGDLLKSDVAAGEYWRL 118
Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV 234
TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A+
Sbjct: 119 LTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIALLGGSAAVMLFENDRAL 178
Query: 235 --GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 179 TAGASGAIYGLMGAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 229
>gi|384044908|ref|YP_005492925.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
gi|345442599|gb|AEN87616.1| Serine protease of Rhomboid family, contains TPR repeats [Bacillus
megaterium WSH-002]
Length = 481
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ +L+++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 155 FTYIFLALQILMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPIILHIGLLHL 214
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G+
Sbjct: 215 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFGAL 274
Query: 248 AVFIMRHR-----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+FI R +G +I+ N+ G + +DN GH+GGL+GG
Sbjct: 275 -LFIARTNPRFFFRTMGSS------FIVIIVINLIFGFVAPNVDNAGHIGGLVGG 322
>gi|331086792|ref|ZP_08335869.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409958|gb|EGG89393.1| hypothetical protein HMPREF0987_02172 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 209
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLLW--GAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T ++ +N+ +++ Q T+D + ++ GA + S+++ G+++RL TS FLH HL
Sbjct: 10 TIAMIVINITIFLVLSFQGMTEDGIFMFHHGAMYVPSMLEDGEYYRLFTSMFLHFGFEHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
M N + L IG +E G +YL VY S + + +S + + GASGAIFG
Sbjct: 70 MNNMFILGVIGWNLELEIGKWKYLTVYLLSGLMGNLLSAWMDIQTGEYAISAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
++G+ +R+R +G + LA +++ ++ +G KG+DN H+GG++ G ++
Sbjct: 130 VIGALFYVALRNRGRIGNISS--RGLAFMVLCSLYLGFTSKGVDNSAHIGGVISGILLAA 187
Query: 303 LLGPALKY 310
+L KY
Sbjct: 188 ILYHKKKY 195
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 18/197 (9%)
Query: 120 LDTARTNL---FIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQF 171
+D + NL F G T L+A+NVLVY+ A +T +L+ GA + ++I G
Sbjct: 1 MDKTKINLKNFFAGPFVTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAG 60
Query: 172 W-RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC- 229
W L TS F+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F
Sbjct: 61 WASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAA 120
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
NS + GASGAIFG++G + + ++RN + G G++ L A I+ G+ I
Sbjct: 121 PNSISAGASGAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIV----SGMFGTNI 176
Query: 286 DNWGHVGGLLGGAAISW 302
D + H+GGL+ G + +
Sbjct: 177 DIFAHLGGLVAGFLLGY 193
>gi|224122384|ref|XP_002318821.1| predicted protein [Populus trichocarpa]
gi|222859494|gb|EEE97041.1| predicted protein [Populus trichocarpa]
Length = 298
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++ K Q WRL + +LHA I HL+ N SL IG +E+ G R VY S S
Sbjct: 80 TKVVHKHQGWRLISCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGIVYLLSGFGGS 139
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ ++ + +I L L + N+AIG+L
Sbjct: 140 VLSSLFIRNSISVGASGALFGLLGAMLSELITNWSIYTNKTAALFTLLVITAINLAIGIL 199
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALKY 310
+ +DN+ H+GG L G + ++L P +Y
Sbjct: 200 PR-VDNFAHIGGFLSGFLLGFVLLPRSQY 227
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 14/186 (7%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VNVLV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNVLVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G ME+ G +YL Y +S +A++++S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANSISLAVQVRTGQASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFG+VG I H L G + L +++ + G G+DN H+GGL+ G
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDGLTN--RQLGFMVLLTLYHGFTSAGVDNMAHIGGLISGF 186
Query: 299 AISWLL 304
+ LL
Sbjct: 187 ILGILL 192
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 48 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 106
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +
Sbjct: 107 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMM 166
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ K+ L L ++ + + L + I+ H+GG +GG I+ +
Sbjct: 167 YVSKTF---NKKMLGQLLIALVILVGVSLFMSNINIVAHIGGFIGGLLITLI 215
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
+++RL T+AFLHA + H++ N Y+L +G +E+I G RYL ++ AI + +SY
Sbjct: 205 EYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALFVVCAIGGNTLSYLIN 264
Query: 230 --NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ +VGAS A+FG ++ V R R + + ++ N+ I I ID
Sbjct: 265 GWNTFSVGASTAVFGFFAAYYVIARRLR-------ADTSAILIIVGINLIITFTIARIDK 317
Query: 288 WGHVGGLLGGAAI 300
WGH+GGL+ G +
Sbjct: 318 WGHIGGLVAGLVV 330
>gi|115486807|ref|NP_001068547.1| Os11g0704800 [Oryza sativa Japonica Group]
gi|62733172|gb|AAX95289.1| Rhomboid family, putative [Oryza sativa Japonica Group]
gi|77552712|gb|ABA95509.1| rhomboid family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645769|dbj|BAF28910.1| Os11g0704800 [Oryza sativa Japonica Group]
Length = 374
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ ++ Q WRL T +LHA + HL++N L IG +E+ G R VY S +
Sbjct: 105 VTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGG 164
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S MS F S +VGASGA+FGL+GS ++ + ++ L L VI+ N+A+G+
Sbjct: 165 SLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVIVVNLALGI 224
Query: 281 LIKGIDNWGHVGGLLGG 297
L + +DN+ H+GGL+ G
Sbjct: 225 LPR-VDNFAHIGGLISG 240
>gi|158311990|ref|YP_001504498.1| rhomboid family protein [Frankia sp. EAN1pec]
gi|158107395|gb|ABW09592.1| Rhomboid family protein [Frankia sp. EAN1pec]
Length = 381
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
SL Q++RL T+AFLH N H++VN Y+L +G +E I G R + ++ + A+ +
Sbjct: 208 SLAWDDQYYRLLTAAFLHVNYLHVLVNLYALFVLGYQLEAILGRLRLVALFVACAVGGNT 267
Query: 224 MSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+SY + +VGAS AIFG G++ V R R + + +I N A+
Sbjct: 268 LSYLVNGVSVNSVGASTAIFGFFGAYYVIARRLR-------ADTTQILILIGINFALTFT 320
Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
+ ID WGHVGGL+ G + L
Sbjct: 321 LSFIDRWGHVGGLVAGVLVGLL 342
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 69 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 128
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
H+ N SL IG +E G RYL VYF S +A A++Y + + ++GASGA
Sbjct: 129 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTSPQTASLGASGA 188
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
IFGL G+ AV +MR N +++ + +++ N+ + I H+GGL+ G
Sbjct: 189 IFGLFGATAV-LMRRLNY------DMRPVIALLVINLIFTFGVGNIAWQAHIGGLVAGVV 241
Query: 300 ISWLL 304
+ +
Sbjct: 242 TGYAM 246
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 15/188 (7%)
Query: 126 NLFIGRQWTNILLAVNVLVYI----AQFATQDKLLLW-GAKINSLIDKGQFW-RLATSAF 179
N F G T L+A+NVLVY+ A +T +L+ GA + ++I G W L TS F
Sbjct: 3 NFFAGPFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMF 62
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
+H HL+ N +L IG +E++ G R+L +Y S I ++ +S F NS + GAS
Sbjct: 63 VHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSISAGAS 122
Query: 238 GAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
GAIFG++G + + ++RN + G G++ L A I+ G+ ID + H+GGL
Sbjct: 123 GAIFGIIGVWIMMAEQYRNYPFLAGMGRQMLIFSALGIV----SGMFGTNIDIFAHLGGL 178
Query: 295 LGGAAISW 302
+ G + +
Sbjct: 179 VAGFLLGY 186
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ---DKLLLWGA------KINSLIDKGQFWRLATSAFLH 181
R T IL+ +N+ V+IA A D L+L+GA S + G+++R TS F H
Sbjct: 83 RLLTKILIGINLAVFIAVQADSSLLDHLVLYGAWPPKPFAPTSGVAGGEWYRFVTSMFAH 142
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGA 239
H+ N SL IG +E G RYL VYF S +A A++Y + + ++GASGA
Sbjct: 143 QEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTSPQTASLGASGA 202
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
IFGL G+ AV +MR N +++ + +++ N+ + I H+GGL+ G
Sbjct: 203 IFGLFGATAV-LMRRLNY------DMRPVIALLVINLIFTFGVGNIAWQAHIGGLVAGVV 255
Query: 300 ISWLL 304
+ +
Sbjct: 256 TGYAM 260
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 134 TNILLAVNVLVYIAQFATQ--DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY + D L +G N I +GQ+WR T FLH + HL+ N
Sbjct: 18 VSTLIALNLLVYALTWLPLLGDWLYFYGVGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R+ +Y S+ + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKVRFTTIYLSAGLFASAATYFLQPLDYAHVGASGAIFGVFGAFGA 137
Query: 250 FI 251
+
Sbjct: 138 LV 139
>gi|125532680|gb|EAY79245.1| hypothetical protein OsI_34361 [Oryza sativa Indica Group]
Length = 332
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q WRL T +LHA + HL+ N SL IG +E+ G
Sbjct: 101 ATLQKMGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGY 156
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S I S +S F NS +VGASGA+FGL+G+ + + I L
Sbjct: 157 MRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 216
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L VI N+AIG+L +DN+ H+GG L G
Sbjct: 217 TLLIVIAINLAIGIL-PHVDNFAHIGGFLTG 246
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 26/178 (14%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F +D + +LW ++ L D ++WRL TS FLH
Sbjct: 113 LLIAVNVIVYALTVFQARDVMSNHNSPVFNDGVLW-PEVVVLFD--EWWRLLTSGFLHYG 169
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ HL +N +L +G +E + G R+L VYF S A A + F PA GASGAI
Sbjct: 170 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGGAAVFVF-GDPATGTAGASGAI 228
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
+GL+G+ V ++R R +I+ N+ I + I I GH+GGL+ GA
Sbjct: 229 YGLMGAILVAVLRLR-------LNPTTAIGIIVLNVIISVSIPNISLLGHLGGLVAGA 279
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)
Query: 116 GTSHLDTARTNLFIGRQ------WTNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLI 166
G + RT F GRQ T L+A+NVL ++ Q A + +L LW +
Sbjct: 53 GARTIRQPRTR-FGGRQRSAAPVLTYALIAINVLAFVLQLAAGNLERQLALW----PPAV 107
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226
GQ++RLATSAFLH HL+ N ++L +GP +E G R+ +Y S + S + Y
Sbjct: 108 ADGQYYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGSVLVY 167
Query: 227 RFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
++ GASGAIFGL G A F++ R + + + +A ++F + L+
Sbjct: 168 LVSPLDTATAGASGAIFGLFG--ATFVVGKR-LAVDVRWVVVVIAINLVFTFLVPLMSSQ 224
Query: 285 IDNW-GHVGGLLGGAAIS 301
+W HVGGL+ G ++
Sbjct: 225 RISWQAHVGGLVTGGLVA 242
>gi|167748326|ref|ZP_02420453.1| hypothetical protein ANACAC_03070 [Anaerostipes caccae DSM 14662]
gi|167652318|gb|EDR96447.1| peptidase, S54 family [Anaerostipes caccae DSM 14662]
Length = 280
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A ++L WGA +G+ +RL TS FLH HL N
Sbjct: 98 QATAVILTINIFMYLWS-AASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 156
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 157 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 216
Query: 246 SFAVFIMRHR----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ ++++R GGG +A +I ++ G G+DN H+GG +GG ++
Sbjct: 217 AMLWILIKNRGYQKEFYGGG------VALMIAGSLYHGFSTMGVDNAAHIGGCIGGFLLA 270
Query: 302 WLL 304
LL
Sbjct: 271 ILL 273
>gi|15240744|ref|NP_196342.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
gi|7546703|emb|CAB87281.1| membrane protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|20466143|gb|AAM19993.1| AT5g07250/T28J14_190 [Arabidopsis thaliana]
gi|332003744|gb|AED91127.1| RHOMBOID-like protein 3 [Arabidopsis thaliana]
Length = 346
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+AIG+L
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245
Query: 282 IKGIDNWGHVGGLLGGAAISWLL 304
+DN+ HVGG + G + ++L
Sbjct: 246 -PHVDNFAHVGGFVTGFLLGFIL 267
>gi|317472135|ref|ZP_07931467.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
gi|316900539|gb|EFV22521.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLHANIAHLMVN 190
Q T ++L +N+ +Y+ A+ + +L WGA +G+ +RL TS FLH HL N
Sbjct: 127 QATAVILTINIFMYLWSAASTE-ILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNN 185
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS-----PAVGASGAIFGLVG 245
IG +E I G RY+ +Y + + S +S + + +VGASGAIFGL+G
Sbjct: 186 MIVFVLIGSRLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMVASVGASGAIFGLIG 245
Query: 246 SFAVFIMRHR----NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ ++++R GGG +A +I ++ G G+DN H+GG +GG ++
Sbjct: 246 AMLWILIKNRGYQKEFYGGG------VALMIAGSLYHGFSTMGVDNAAHIGGCIGGFLLA 299
Query: 302 WLL 304
LL
Sbjct: 300 ILL 302
>gi|297810841|ref|XP_002873304.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319141|gb|EFH49563.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 346
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++K + WRL T +LHA + HL N SL IG +E+ G R +Y S I S
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLIFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+GS + + I L L VI+ N+AIG+L
Sbjct: 186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245
Query: 282 IKGIDNWGHVGGLLGGAAISWLL 304
+DN+ HVGG + G + ++L
Sbjct: 246 -PHVDNFAHVGGFVTGFLLGFIL 267
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYFFK 337
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 21/177 (11%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WRL T FLH +
Sbjct: 184 FTYLLIAVQVVMFLLLELSGGSTNTAT---LTAFGAKNNVLILEGEWWRLVTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +Y S I S S+ F + A GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIAAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNI----LGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+ + +R + +G ++ +I+ N+ IG + GIDN GH+GGL GG
Sbjct: 301 GALLYLAISNRKLFFRTMGT------NIIVIILINLGIGFTVSGIDNAGHLGGLTGG 351
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L +GAK N LI G++WRL T FLH + HL+ N ++L S+G +EKI G R+L +Y
Sbjct: 211 LTAFGAKNNGLILDGEWWRLITPMFLHIGLTHLLFNTFALWSVGAAVEKIYGSWRFLLIY 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
F S S S+ F + A GASGAIFG +G+ + +R + + ++ +I+
Sbjct: 271 FISGTFGSIASFVFNTAIAAGASGAIFGCLGALLYLAISNRKLF--FRTMGTNIIVIILI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ IG + GIDN GH+GGL+GG
Sbjct: 329 NLGIGFTVSGIDNAGHLGGLVGG 351
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 34/206 (16%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S S + ++ +VGASGAI GL G +++ + + AK I F ++I +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK------------RVFAKEIHFILSINV 470
Query: 281 LI-----------KGIDNWGHVGGLL 295
I G+DN H+GG +
Sbjct: 471 AIFVTASVVSGFLGGVDNAAHIGGFV 496
>gi|110289433|gb|ABG66197.1| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
gi|215686404|dbj|BAG87689.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 227
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 7 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 66
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 67 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINLAIGIL 126
Query: 282 IKGIDNWGHVGGLLGG 297
+DN+ H+GG L G
Sbjct: 127 -PHVDNFAHIGGFLTG 141
>gi|269124334|ref|YP_003297704.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
gi|268309292|gb|ACY95666.1| Rhomboid family protein [Thermomonospora curvata DSM 43183]
Length = 302
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 23/174 (13%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSL-----IDKGQFWRLATSAFLHAN-- 183
T L+A+NVLVY+AQ ++ + G + + + G+++RL T+AFLH+
Sbjct: 77 TYTLIALNVLVYLAQLSSSRIVYDFAMVGVRFDPYGEMHGVADGEWYRLITAAFLHSQPG 136
Query: 184 -----IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGAS 237
+ H++ N ++L IGP +E++ G R+ +Y SA+ S + Y AVGAS
Sbjct: 137 GGSFGVTHILFNMWALWVIGPQLEQVLGRWRFTSLYLLSALGGSVLLYLVDPTGAAVGAS 196
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
GAIFGL G+F V R GG + +++ N+ I + GI GH+
Sbjct: 197 GAIFGLFGAFFVIAKRLNAPAGG-------IVFLLVLNLVITFTVPGISWEGHI 243
>gi|168053660|ref|XP_001779253.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669352|gb|EDQ55941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 137 LLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+A+NV VY+ A+ ++ L+GAK+N LI G++WRL T FLH+ HL
Sbjct: 1 LVALNVAVYLFGLASPQEVPGMVDASLPYLYGAKVNELIVNGEWWRLITPTFLHSGFLHL 60
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++ ++L GP + G + +Y + + +S+ VG SG IF L+ ++
Sbjct: 61 GLSTWALLEFGPAVGSAFGTLGFSAIYLLGGLYGNLLSFFHTPQGTVGGSGPIFALMAAW 120
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG--IDNWGHVGGLLGGAAISWLLG 305
V+I+R+R+I+G + + KV+IF L +D+W H+G + G L
Sbjct: 121 VVYILRNRDIIGLDVAG-EIIRKVVIFTAITYALCNSFPVDDWTHLGAAISGLIFGLLTC 179
Query: 306 PALK 309
P ++
Sbjct: 180 PLVR 183
>gi|22122915|gb|AAM92298.1| putative membrane protein [Oryza sativa Japonica Group]
Length = 329
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ ++ + Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S I S
Sbjct: 109 DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F NS +VGASGA+FGL+G+ + + I L L VI N+AIG+L
Sbjct: 169 VLSSLFIRNSISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINLAIGIL 228
Query: 282 IKGIDNWGHVGGLLGG 297
+DN+ H+GG L G
Sbjct: 229 -PHVDNFAHIGGFLTG 243
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 34/206 (16%)
Query: 110 KNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK--------LLLWGAK 161
+N+ E S L+ R G T +L+++N V+I + LL WGA
Sbjct: 305 RNTTSELQSWLEFIRPK--AGFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSHFLLEWGAN 362
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ G++WRL TS+F+H +AHL++N Y L +G +E + G R L VY S I +
Sbjct: 363 FRPNVLAGEWWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILA 422
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S S + ++ +VGASGAI GL G +++ + + AK I F ++I +
Sbjct: 423 SVASLCWYDATISVGASGAIMGLFGILVIWVWK------------RVFAKEIHFILSINV 470
Query: 281 LI-----------KGIDNWGHVGGLL 295
I G+DN H+GG +
Sbjct: 471 AIFVTASVVSGFLGGVDNAAHIGGFV 496
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVNV+++ + Q + D L G + + + G++WRL T+ FLH + H
Sbjct: 14 TYALIAVNVVIFALCVIQAKSFDAGLAPLFQHGDLVRADVANGEYWRLLTAGFLHFTVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
+ +N SL +G +E G R+L VYF + SA M + N + GASGAI+GL+
Sbjct: 74 IALNMISLYILGRDLETALGHSRFLMVYFIALFGGSAAVMLFEAGNVRSAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ V +++ R G + +I+ N+ + + GI HVGGL+ GAA
Sbjct: 134 GAMLVIVVKARISPTG-------VITIIVINLVFSVTMPGISLAAHVGGLVFGAA 181
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 134 TNILLAVNVLVYIAQFAT-----------QDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T IL+ + V YI Q A + G +I + Q++RL T+AFLHA
Sbjct: 68 TQILIGLCVAAYILQGAPGLTGRGTFNRFTGDFAMIGIRIAA---DDQYYRLLTAAFLHA 124
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAI 240
+ H++ N Y+L +G +E I G RYL ++ + A+ + +SY + + +VGAS AI
Sbjct: 125 GVLHILFNMYALYLLGFQLEAILGRARYLALFVAGALGGNTLSYVLGDGFTVSVGASTAI 184
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
F ++ + R R + + + V+ N+AI ID WGH+GGL GA I
Sbjct: 185 FAFFAAYYIIARRLR-------VDSRQILIVLGINLAITFSFSNIDKWGHLGGLAVGAII 237
Query: 301 SWL 303
+
Sbjct: 238 GLI 240
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 133 WTNILLAVNVLVYI--------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
+T +L+AV V++++ AT L +GAK N LI +G++WR T FLH +
Sbjct: 184 FTYMLIAVQVVMFLLLELSGGSTNTAT---LTAFGAKNNVLILEGEWWRFVTPMFLHIGL 240
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL+ N ++L S+G +E+I G R+L +Y S I S S+ F + GASGAIFG +
Sbjct: 241 THLLFNTFALWSVGAAVERIYGSGRFLLIYLISGIFGSIASFVFNTAIVAGASGAIFGCL 300
Query: 245 GSFAVFIMRHRNI 257
G+ + +R +
Sbjct: 301 GALLYLAISNRKL 313
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G++WRL T F+HA +HL+ N SL P +E++ G R+L VY S + + +
Sbjct: 53 IAEGEWWRLVTPVFIHAGFSHLLFNSMSLFLFAPALERMMGKLRFLAVYIGSGVIGNIGT 112
Query: 226 YRFCNSPA---VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y F P VGASGAIFGL G + ++ + ++ + +I+ +AI +L+
Sbjct: 113 Y-FIEPPEYTHVGASGAIFGLFGVYLYMVLFRKGLMDTANSQ------IIVTILAISILM 165
Query: 283 K----GIDNWGHVGGLLGGAAIS 301
I+ H+ GLLGG A+S
Sbjct: 166 TFINYNINIMAHIFGLLGGLALS 188
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+L G ++SL G+++R T FLHA++ H+ N +L +GP +EK+ G ++L
Sbjct: 45 QSLVLLGGGVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLL 104
Query: 213 VYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y + + + +++ F +P +VGASGA+FGL G V +RN + +L A
Sbjct: 105 IYLITGVWGNLLTFIFDPNPNVVSVGASGALFGLFGVMIVSGWYNRNNF-VFRRQLIIFA 163
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ +FN+ L +D W H+GGL+ G+ ++
Sbjct: 164 ALAVFNLIGNLNDPSVDIWAHIGGLISGSLLA 195
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 131 RQWTNILLA-VNVLVYI---AQFATQDKLLLW--GAKINS-LIDKGQFWRLATSAFLHAN 183
R + NI LA VN LV++ A +T+D + + GA +I G+++RL T+ FLH
Sbjct: 9 RPYVNIALAAVNALVFLYLEAIGSTEDGVFMVKHGAVFAPFVILGGEYYRLFTAMFLHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASG 238
++HL N L +G MEK G +YL Y +S +A++ +S S + GASG
Sbjct: 69 VSHLANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANGISLAVQVRTGAASVSAGASG 128
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFG+VG I H L G + L +++ + G G+DN H+GGL+ G
Sbjct: 129 AIFGVVGGLVYVIAIHHGQLDGLTN--RQLGFMVLLTLYHGFTSTGVDNVAHIGGLISGF 186
Query: 299 AISWLL 304
+ LL
Sbjct: 187 ILGILL 192
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 134 TNILLAVNVLVY---IAQFATQD----KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+AVN+LV+ + Q D + G + S + G++WRL T+ FLH ++ H
Sbjct: 14 TYALIAVNLLVFALCVLQSGVGDPGGASIFSAGDLLKSDVASGEYWRLLTAGFLHFSVMH 73
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+ VN SL +G +E G RYL VY + + SA F + A+ GASGAI+GL+
Sbjct: 74 VAVNMLSLYILGRDLELALGIGRYLAVYGIALLGGSAAVMLFEDDRALTAGASGAIYGLM 133
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ V +++ R + +I FN+ + + GI GH+GGL GAA
Sbjct: 134 GAMLVIVLKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGHLGGLFFGAA 181
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA+ HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHASFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ + K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFLRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 476 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 507
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 42 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 100
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F S +VGASGAIFGL+GS V +
Sbjct: 101 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYL 160
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 161 SKNF---NKKMIGQLLIALVVLIGFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 212
>gi|408679359|ref|YP_006879186.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
gi|328883688|emb|CCA56927.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 294
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--------LWGAKINSLID--KGQFWRLATSAFLHAN 183
T IL+ VN+ VY+A D+L+ W + ++ G+++RL TS LH
Sbjct: 84 TKILIGVNLAVYLAVLVFGDRLVDELVLIGYAWSPALGEVVGVADGEWYRLLTSTVLHQE 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
+ H++ N L IG +E G RY + S ++ S ++Y N P++GASG ++
Sbjct: 144 VWHILFNVLGLWVIGGIVEPELGRIRYAALCLLSGLSGSVLAYVVAEPNQPSLGASGVVY 203
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI----KGIDNWGHVGGLLGG 297
GL+G++ V R R H + +I +A+ LLI GI HVGGL+ G
Sbjct: 204 GLIGAWVVLARRRR-----------HDMRPVILFVALSLLITFTRPGISWEAHVGGLVAG 252
Query: 298 AAISWLL 304
+++ L
Sbjct: 253 VLVTYAL 259
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 11/190 (5%)
Query: 135 NILLAVNVLVY--IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
IL+A++VL++ I + + G +N + G +WRL T F+H H++ N
Sbjct: 19 TILVAIHVLIFFWINLLPGGEWIYYHGVGLNLAVHNGDYWRLVTPIFMHVGFMHVIFNSV 78
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAV 249
SL GP +E++ G R++ +Y SS I ++ +Y +GASGAIFGL G++
Sbjct: 79 SLILFGPPLEQMLGKFRFILLYLSSGIIANIATYYVGGLDYYAHLGASGAIFGLFGAYFY 138
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL----G 305
++ ++++ + Q + +++ + + + I+ + H+ G +GGA + L+
Sbjct: 139 IVLNRKDLI--DQTSSQMIMTILVIGLVMTFVNPNINIYAHIFGAIGGALMIPLILIGVK 196
Query: 306 PALKYEFTSD 315
P +Y+ +D
Sbjct: 197 PYQRYQTYTD 206
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N ++L +G ++E GP R+L +Y + + +
Sbjct: 134 IVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F N+ GAS AIFGL FA I+ R + ++ + V++ N+ L +
Sbjct: 194 YLFSAENATTAGASTAIFGL---FAALIVIERRM----GRDISSVLPVLVINLVFTLTVP 246
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
GI GH+GGL+ G A++ +L
Sbjct: 247 GISIPGHLGGLVTGGAMALML 267
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ K + L ++ + + L + I+ H+GG +GG I+
Sbjct: 285 LSK----TFDKRVIGQLLIALVILIGLSLFMSNINVMAHLGGFIGGLLIT 330
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 7 NIVIWLCMILYLNRFS-DVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 65
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 66 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 125
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYE 311
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K +
Sbjct: 126 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFKTQ 179
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 20/158 (12%)
Query: 116 GTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKI 162
GT H +A T I R T IL+ +NV +Y+ Q + D L+ A
Sbjct: 62 GTGHAPSATTPRTIAGGTIAADPRLLTKILIGLNVALYLLQLSIGDDFTQRFELVGRASY 121
Query: 163 NSL-----IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
L + +GQ++RL TS FLH ++ H++ N SL +G +E G RYL +Y S
Sbjct: 122 EYLGPVEGVAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYLVS 181
Query: 218 AIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMR 253
+A SA++Y +P++GASGAIFGL G+ AV + R
Sbjct: 182 GLAGSALTYLLEAPTTPSLGASGAIFGLFGATAVLMRR 219
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 19/177 (10%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+AVNVL+++ + A + +L L A I + +++RL TS FLH HL+ N
Sbjct: 40 TYTLIAVNVLMFVLELAAGALKRELALQPASIAA---YDEYYRLVTSMFLHYGAMHLLFN 96
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFA 248
++L +GP +E+ G R+ +Y S + S + Y NS GASGAIFGL G+
Sbjct: 97 MWALYVVGPPLEQWLGRLRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIF 156
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKGIDNW-GHVGGLLGGAAIS 301
V + RH N+ +++ + +++ N+ +G + +W GH+GGL+ GA ++
Sbjct: 157 V-VARHLNL------DVRAIGVIVVINLVFTFVGPALGTAISWQGHIGGLVTGALVA 206
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
GQ+WRL T+ FLH I HL+ N + +G +E + G R+L VY S I + +S+
Sbjct: 53 GQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPLLGHIRFLAVYLISGIGGNLLSFAL 112
Query: 229 CN--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLI 282
+ S + GAS A+FGL G+ +R+ + G + ++++ + + N+ + L I
Sbjct: 113 GDDRSISAGASTALFGLFGALIAVGVRNATSVEGSNSLISYISRQAFVLALINIGLDLFI 172
Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
ID GH+GGL GA ++ +LG +F++ RI S I + + R+
Sbjct: 173 PNIDLQGHLGGLFTGAMLTIILGNRATNKFSAK--VRIISGVILIIYAVATIRQ 224
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 138 LAVNVLVYIAQFATQDKL---LLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYS 193
+ + V VYI F+ +K + GA + ++G++WR TSAF+H HL +N Y
Sbjct: 3 ICIAVFVYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNMYC 62
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLVGS 246
+ +G E I GP RYL + S + SS +Y + NS +GASG +G +G+
Sbjct: 63 IFYLGRLFETILGPVRYLILVLVSIVMSSLATYYYSFRDSSVDNSITIGASGLFYGFLGA 122
Query: 247 FAVFIMRHRNILGGGK--EELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ + GG + L+ I N+A L+ I GHVGGL+GG +++
Sbjct: 123 -----IIGLGLFKGGAFFDLLRGYLPCIAINLAFTLMNSRISKTGHVGGLVGGYLTMYIM 177
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA-AISWLLG 305
+ V ++ R ++ ++ L +I N+A G L+ GI H GG + GA A + LL
Sbjct: 195 YLVIMVVLRE-----RDNIRALMIMIAVNVAFGFLVPGISWQAHAGGFVIGALATAVLLA 249
Query: 306 PAL 308
P +
Sbjct: 250 PQI 252
>gi|255646809|gb|ACU23876.1| unknown [Glycine max]
Length = 212
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T FLHA I H+ V+C++L + GP + K G + +Y +A + +S+
Sbjct: 3 GEWWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLH 62
Query: 229 CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG-GKEELQHLAKVIIFNMAIGLL--IKGI 285
P VG +G +F ++G++ ++ +++++++ E L H K +I I +L I
Sbjct: 63 TPDPTVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFH--KAVIMTALIFILSHFGPI 120
Query: 286 DNWGHVGGLLGGAAISWLLGPALK 309
D W H G G A +L P L+
Sbjct: 121 DEWSHFGAAFSGMAYGFLTSPILQ 144
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L + + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALFVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFIIGVLIT-LIGYYFK 337
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASGAIFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGAIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L + + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALFVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|116872768|ref|YP_849549.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741646|emb|CAK20770.1| rhomboid family membrane protein [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 512
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAV 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I L ID GH+GGL+GG
Sbjct: 329 NLFIDLFSTQIDIAGHIGGLVGG 351
>gi|16800442|ref|NP_470710.1| hypothetical protein lin1374 [Listeria innocua Clip11262]
gi|422415832|ref|ZP_16492789.1| rhomboid family protein [Listeria innocua FSL J1-023]
gi|16413847|emb|CAC96605.1| lin1374 [Listeria innocua Clip11262]
gi|313623901|gb|EFR94013.1| rhomboid family protein [Listeria innocua FSL J1-023]
Length = 512
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSTQIDIAGHIGGLVGG 351
>gi|423100417|ref|ZP_17088124.1| peptidase, S54 family [Listeria innocua ATCC 33091]
gi|370793418|gb|EHN61256.1| peptidase, S54 family [Listeria innocua ATCC 33091]
Length = 518
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSTQIDIAGHIGGLVGG 357
>gi|422412807|ref|ZP_16489766.1| rhomboid family protein, partial [Listeria innocua FSL S4-378]
gi|313619110|gb|EFR90907.1| rhomboid family protein [Listeria innocua FSL S4-378]
Length = 472
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYILIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGTSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSTQIDIAGHIGGLVGG 351
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
NI++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N SL
Sbjct: 167 NIVIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMR 253
G +E I G R L +Y S + + +S F + +VGASG IFGL+GS V +
Sbjct: 226 FIFGKIVESIIGSWRMLIIYIISGLYGNFVSLSFNTTTISVGASGTIFGLIGSIFVIMYL 285
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+N K+ + L ++ + L + I+ H+GG + G I+ L+G K
Sbjct: 286 SKNF---NKKMIGQLLIALVVLIVFSLFMSNINIMAHLGGFISGVLIT-LIGYYFK 337
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 32/190 (16%)
Query: 131 RQWTNILLAVNVLVYI---AQFATQDKLLLWG-AKINSL------IDKGQFWRLATSAFL 180
R T IL+ +N+ V++ A A +D LLL+G A ++ + +GQ++RL TS FL
Sbjct: 86 RLITKILIGINLAVFVGVLAHPALRDDLLLFGRAYVDERSAGYQGVAEGQWYRLVTSTFL 145
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H + H+ N L +G +E G RYL +Y S +A SA++Y + PA +GAS
Sbjct: 146 HQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYLIAD-PAQGTLGAS 204
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG------HV 291
G++FGL+G+ AV +MR N +++ + +++ N LI + WG HV
Sbjct: 205 GSVFGLLGATAV-LMRRMNY------DMRPVIALLVVN-----LIFTFNPWGGIAWQAHV 252
Query: 292 GGLLGGAAIS 301
GL+ GA I+
Sbjct: 253 EGLIAGALIA 262
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 22/174 (12%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L + Q A+ Q LW + + G+ +RL TSAFLH + HL N
Sbjct: 70 TYALIGINLLAFALQMASPGLQRAFGLW----SPAVADGEMYRLLTSAFLHFGLTHLAFN 125
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 126 MLALYFVGPPLEAALGRARFITLYLVSALGGSVLVYLLTLNALTAGASGAVFGLFG--AT 183
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGG 297
F++ R N+ +++ + +I+ N+A LI + I GH+GGL+ G
Sbjct: 184 FVVGRKLNM------DVRSVMAIIVLNLAFTFLIPLFTSQNISWQGHIGGLVTG 231
>gi|422015063|ref|ZP_16361669.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
gi|414100115|gb|EKT61738.1| hypothetical protein OOA_09928 [Providencia burhodogranariea DSM
19968]
Length = 291
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 37/210 (17%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+ +Y+ Q FA+ +D LLL+GA + L G +WR S LH+N H
Sbjct: 25 TLILVLLNIGIYLYQLSFASPLESREDNLLLFGANVYQLSLTGDWWRYPISMVLHSNSVH 84
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP--------- 232
L NC +L IG E+ G R L +Y S I ++ S Y N+
Sbjct: 85 LGFNCLALFVIGIECERAYGKFRLLAIYIISGIGAALFSAYWQYYETLNAANSSNNVWQM 144
Query: 233 --------AVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGL- 280
VGASGAI GL + +++++ N IL +E+ + II +A+ L
Sbjct: 145 DSTIYITIGVGASGAIMGLAAASVIYLLKAINSPTILPAIREKQKRQLYNIIAMIALTLI 204
Query: 281 --LIKGIDNWGHVGGLLGGAAIS--WLLGP 306
L G+DN H+GG + GA +S ++L P
Sbjct: 205 NGLQSGVDNAAHIGGAIIGALVSIGYVLMP 234
>gi|410455491|ref|ZP_11309370.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
gi|409929185|gb|EKN66272.1| serine protease of Rhomboid family, contains TPR repeats [Bacillus
bataviensis LMG 21833]
Length = 519
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW-TNILLAVNVLVYI-AQF--- 149
+FA S + +K S + T R L G+ + T + +A+ +V+ +F
Sbjct: 145 SFAEDYSEQDVEAIKKESLDFANKKVKTERAILSNGKPFFTYVFIAIQAIVFFWLEFHGG 204
Query: 150 -ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
L+ +GAK+N LI G++WR T FLH HL +N +L +G T+EKI G
Sbjct: 205 STNTSTLIKYGAKVNQLILGGEWWRFITPIFLHIGFVHLAMNTLALYFLGTTVEKIFGSV 264
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVF 250
R+L +Y + + S+ F ++ + GASGAI+G G+ F
Sbjct: 265 RFLLIYLFAGVMGVIASFIFSSTLSAGASGAIYGCFGALLYF 306
>gi|259046463|ref|ZP_05736864.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
gi|259036879|gb|EEW38134.1| small hydrophobic molecule transporter protein [Granulicatella
adiacens ATCC 49175]
Length = 232
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 133 WTNILLAVNVLVYI----AQFATQDKLLL-WGAKINS-LIDKGQFWRLATSAFLHANIAH 186
+T + LA+ ++I A +T ++L+ +GAK N +I + +++R T FLH + H
Sbjct: 22 FTYLFLAIQAALFIVMTLAGGSTNGQVLVNFGAKFNPYIIYQHEYYRFLTPIFLHIGLEH 81
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
++ N L IG ME G R+L VY S I + S+ F +S + GAS A+FGL+G+
Sbjct: 82 ILFNSVFLYMIGRQMEYEIGHWRFLVVYLLSGIMGNLASFAFSSSISAGASTALFGLMGA 141
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
V++ R + ++ A +I+ N+ +G + +DN+GH+GGL+GG +
Sbjct: 142 -VVYLSRKHGYIRSFRQMGMQYAGLIVINIVLGFINSAVDNYGHLGGLVGGYLV 194
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 17/170 (10%)
Query: 134 TNILLAVNVLVYIA-QFATQDK----LLLWGAKINS--LIDKGQFWRLATSAFLHANIAH 186
T L+ + V++++A +F+ + L+ +GA + LI+K ++WRL T FLH H
Sbjct: 17 TYCLIGITVIIFLAMEFSGGSENSRVLIQFGALVRPYILINK-EYWRLFTPIFLHIGWMH 75
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N +L IG +E+I G RYLG+Y S IA + +S+ F NS + GAS A+FGL
Sbjct: 76 LILNMVTLYYIGEQIERIYGHWRYLGIYLLSGIAGNVLSFSFGSLNSISAGASTALFGLF 135
Query: 245 GSFAVFIMRHRN---ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
G+F + +N IL E ++ I+ N+ L +D GH+
Sbjct: 136 GAFVILGKHFKNNPAIL----EMVRQYTIFIMINLIFNLFSSSVDIMGHI 181
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+F + R+ + + L ++ F + + I+ H GGLL G
Sbjct: 139 YGAFLYVALFQRSFMDDASR--KTLYTLLGFGILFSFAVANINWTAHFGGLLSG 190
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 18/172 (10%)
Query: 137 LLAVNVLVYI---AQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+A NVLV++ Q D L W A + G++WRL T+ FLH ++ H+
Sbjct: 79 LIAFNVLVFVICVGQAGGTDMLNSSLFTDW-ALFKPFVHDGEYWRLLTAGFLHFSLTHIA 137
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N SL +G +E G RY GVY +S + SA F + GASGAI+GL+G+
Sbjct: 138 ANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAAVMLFAGDLTINAGASGAIYGLMGA 197
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
V ++R R + +I N+ + + + GI H+GGLL GA
Sbjct: 198 MLVIVLRMR-------ASPVPVLSIIGLNIVLSITVPGISLAAHLGGLLFGA 242
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T +L+ VN+ V+I T L+ +GA + L+ GQ+WR+ ++AF+H H
Sbjct: 12 KVTLVLMIVNIAVFILMSLTGGSENISNLVRYGAMVKPLVHDGQWWRILSAAFIHIGFFH 71
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLV 244
+M N Y L +IGP E++ G +L +Y + + + +Y F + V GAS +++G+
Sbjct: 72 IMFNMYFLYNIGPLFERLYGSINFLIIYLLAGVMGNLFTYAFGDVSTVSAGASTSLYGMF 131
Query: 245 GSFAVFIMRHRNILGGGKEELQHLA----KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
G ++ +++ L+ L +I+ N+ LL GI GH+GG L G +
Sbjct: 132 GLAMGLMINYKD-----DAVLRGLGASFISIIVINLIYSLLAPGIGIQGHLGGFLAGVLL 186
Query: 301 S 301
+
Sbjct: 187 A 187
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N++L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVILWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ K + L ++ + + L + I+ H+GG +GG I+
Sbjct: 285 LSK----TFDKRVIGQLLIALVILIGLSLFMSNINVMAHLGGFIGGLLIT 330
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +Q+ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSQNSLTLIRYGALINEAPFTDQLWRYVSAIFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+F + R+ + + L ++ F + + I+ H GGLL G
Sbjct: 139 YGAFLYVALFQRSFMDDASR--KTLYTLLGFGILFSFAVANINWTAHFGGLLSG 190
>gi|300823026|ref|ZP_07103160.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|417224822|ref|ZP_12028113.1| peptidase, S54 family [Escherichia coli 96.154]
gi|417268148|ref|ZP_12055509.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|423708594|ref|ZP_17682972.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|432375777|ref|ZP_19618789.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|432833688|ref|ZP_20067234.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
gi|300524375|gb|EFK45444.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|385707931|gb|EIG44956.1| 40-residue YVTN family beta-propeller [Escherichia coli B799]
gi|386199870|gb|EIH98861.1| peptidase, S54 family [Escherichia coli 96.154]
gi|386230506|gb|EII57861.1| peptidase, S54 family [Escherichia coli 3.3884]
gi|430901150|gb|ELC23133.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE12]
gi|431388187|gb|ELG71925.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE136]
Length = 625
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVG- 245
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+ A + + + L ++ + G GIDN H+GGL+ G A+ W
Sbjct: 143 ALATQLASGAGTYHKNQRRVFSLLGMVALTLLYGARQAGIDNACHIGGLIAGGAMGW 199
>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746
[Cucumis sativus]
Length = 479
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 94/186 (50%), Gaps = 15/186 (8%)
Query: 137 LLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHL 187
L+++N+ V++ + A+ K L+GAKIN LI G++WRL T FLH+ + H+
Sbjct: 232 LVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLHSGVLHV 291
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA-SGAIFGLVGS 246
++C++L + G + + GP + +Y ++ + S+ P VG G +F ++G+
Sbjct: 292 ALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRXGPVFAMIGA 351
Query: 247 FAVFIMRHRNILG---GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ + ++++++ K L+ L +I ++ I ID W H G G +L
Sbjct: 352 WLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSN--IGPIDEWTHTGAAFSGMLYGFL 409
Query: 304 LGPALK 309
P ++
Sbjct: 410 TSPIVE 415
>gi|433444473|ref|ZP_20409345.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
gi|432001501|gb|ELK22376.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus TNO-09.006]
Length = 517
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH HL +N ++L +G +EK+ G R+L +Y
Sbjct: 217 LIQYGAKFNPLILQGEWWRFFTPIVLHIGFLHLFMNTFALYYLGSLVEKLYGSFRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------QHL 268
+ A S S+ F +S + GASGAIFG G+ F G K + ++
Sbjct: 277 LFAGFAGSLASFLFSSSVSAGASGAIFGCFGALLYF--------GKAKPHIFFRTIGMNV 328
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
VI N+A GL++ IDN GH+GGL+GG
Sbjct: 329 ITVIGINLAFGLVVPNIDNAGHIGGLIGG 357
>gi|422409553|ref|ZP_16486514.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
gi|313608952|gb|EFR84701.1| rhomboid family protein [Listeria monocytogenes FSL F2-208]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +NVL+++ Q + D L+LW + G +RL T+AFLH H++ N
Sbjct: 75 TYALIGLNVLMFVLQSLSPDVERALVLWPPAVAG----GDLYRLLTAAFLHYGFTHILFN 130
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +G +E G RY +Y SA+ S ++Y NS GASGA+FGL G+
Sbjct: 131 MWALYVVGAPLEAALGRLRYGALYLLSALGGSVLAYLLSPLNSATAGASGAVFGLFGALF 190
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID----NW-GHVGGLLGG 297
V + R N+ +++ + +I+ N+A +I + +W GH+GGL+ G
Sbjct: 191 V-VGRKLNM------DVRGVVVIIVLNLAFTFIIPLVSSQNISWQGHIGGLVTG 237
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 13/173 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MRH---RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ R ++G L L + +F I ++ H+GG +GG I+
Sbjct: 285 LSKTFDRKVIGQLLIALLILICLSLFMSNINIM-------AHLGGFIGGLLIT 330
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLLL--------WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
+++V V++ I +A D L L +G N+ I+ GQ+WRL T FLH + H++
Sbjct: 18 VVSVLVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHML 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAI-ASSAMSYRFCNSPA-VGASGAIFGLVGS 246
N +SL GP +E++ G +++ Y +AI A+ A+ + S A +GASGAIFGL G
Sbjct: 78 FNSFSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGI 137
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ +M ++++ + Q +A ++ + + + I GH+ G L G + LL
Sbjct: 138 YVFMVMYRKDLI--DQSSSQMIAVIVGIGLVMTFIRPNISILGHLFGFLSGIIYAPLL 193
>gi|226223938|ref|YP_002758045.1| hypothetical protein Lm4b_01345 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732075|ref|YP_006205571.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|405752554|ref|YP_006676019.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406704108|ref|YP_006754462.1| rhomboid family protein [Listeria monocytogenes L312]
gi|225876400|emb|CAS05109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384390833|gb|AFH79903.1| rhomboid family protein [Listeria monocytogenes 07PF0776]
gi|404221754|emb|CBY73117.1| rhomboid family protein [Listeria monocytogenes SLCC2378]
gi|406361138|emb|CBY67411.1| rhomboid family protein [Listeria monocytogenes L312]
Length = 512
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|404280891|ref|YP_006681789.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404286756|ref|YP_006693342.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749679|ref|YP_006673145.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|405755466|ref|YP_006678930.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|417317486|ref|ZP_12104103.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|328475056|gb|EGF45844.1| rhomboid family protein [Listeria monocytogenes J1-220]
gi|404218879|emb|CBY70243.1| rhomboid family protein [Listeria monocytogenes ATCC 19117]
gi|404224666|emb|CBY76028.1| rhomboid family protein [Listeria monocytogenes SLCC2540]
gi|404227526|emb|CBY48931.1| rhomboid family protein [Listeria monocytogenes SLCC2755]
gi|404245685|emb|CBY03910.1| rhomboid family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 512
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|217964517|ref|YP_002350195.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|386026709|ref|YP_005947485.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
gi|217333787|gb|ACK39581.1| rhomboid family protein [Listeria monocytogenes HCC23]
gi|336023290|gb|AEH92427.1| hypothetical protein LMM7_1422 [Listeria monocytogenes M7]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|46907563|ref|YP_013952.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424714211|ref|YP_007014926.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
gi|46880831|gb|AAT04129.1| rhomboid family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|424013395|emb|CCO63935.1| Rhomboid family protein [Listeria monocytogenes serotype 4b str.
LL195]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|47093617|ref|ZP_00231374.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|254932348|ref|ZP_05265707.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|258611754|ref|ZP_05241962.2| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|300765423|ref|ZP_07075405.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|424823099|ref|ZP_18248112.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
gi|47017993|gb|EAL08769.1| rhomboid family protein [Listeria monocytogenes str. 4b H7858]
gi|258605928|gb|EEW18536.1| rhomboid family protein [Listeria monocytogenes FSL R2-503]
gi|293583904|gb|EFF95936.1| rhomboid family protein [Listeria monocytogenes HPB2262]
gi|300513860|gb|EFK40925.1| rhomboid family protein [Listeria monocytogenes FSL N1-017]
gi|332311779|gb|EGJ24874.1| Rhomboid family protein [Listeria monocytogenes str. Scott A]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY+ + + + +G N I +GQ+WR T FLH+ + HL+ N
Sbjct: 18 VSTLIALNLLVYVLTWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R++ +Y + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKIRFITIYLLAGFFASAATYFLQPLDYSHVGASGAIFGVFGAFGA 137
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ L K Q + +I+ ++ + L I+ H+ G++ G I
Sbjct: 138 LVYYGGRALPQLK---QIILPIIVISIVMTFLTPNINVTAHIAGMITGFLI 185
>gi|358068283|ref|ZP_09154750.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
gi|356693542|gb|EHI55216.1| hypothetical protein HMPREF9333_01631 [Johnsonella ignava ATCC
51276]
Length = 206
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 137 LLAVNVLVY-----IAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVN 190
L+A+N++ + + D +L +GA+ + +G ++WRL TS F+H I H+ N
Sbjct: 12 LIALNIVFFLFLETVGSSEDADTMLRYGAEFTPYVIEGKEYWRLLTSMFMHFGIDHIANN 71
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVG 245
L IG +E+ G +YL Y I ++ +S F S + GASGA+FG++G
Sbjct: 72 MIVLFMIGDNLERALGHVKYLIFYLICGIGANIVSLFFEMLTGNYSVSAGASGAVFGVMG 131
Query: 246 SFAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++ +R G EEL Q +A I+ ++ G + G+DN HVGG + G +S L
Sbjct: 132 GLLWAVIANR----GRLEELTSQRMAIFIVLSLYYGFISTGVDNAAHVGGAVIGFCLSML 187
Query: 304 L 304
+
Sbjct: 188 I 188
>gi|254824604|ref|ZP_05229605.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
gi|255520229|ref|ZP_05387466.1| rhomboid family protein [Listeria monocytogenes FSL J1-175]
gi|293593842|gb|EFG01603.1| rhomboid family protein [Listeria monocytogenes FSL J1-194]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 13/173 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
TN+++ + +++Y+ +F+ KLL G ++ + G+++RL +S FLH N H+++N S
Sbjct: 166 TNVIIWLCMILYLNRFSDV-KLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAVFI 251
L G +E I G R L +YF S + + +S F S +VGASGAIFGL+GS FA+
Sbjct: 225 LFIFGKIVESIVGSWRMLVIYFVSGLFGNFVSLSFNTSTISVGASGAIFGLIGSIFAIMY 284
Query: 252 MR---HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ R ++G L L + +F I ++ H+GG +GG I+
Sbjct: 285 LSKTFDRKVIGQLLIALLILICLSLFMSNINIM-------AHLGGFIGGLLIT 330
>gi|291521749|emb|CBK80042.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Coprococcus catus GD/7]
Length = 211
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 11/155 (7%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
++I++ +++RL T F+H I+HL N L IG +E+ G +YL VY ++ + SSA
Sbjct: 56 AIIEEHEYYRLLTCTFIHFGISHLFNNMLVLAYIGDNLERALGKFKYLIVYLAAGVGSSA 115
Query: 224 MSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL--QHLAKVIIFNM 276
+S + S + GASGAIFG+VG+ V ++R+R G E+L + L F++
Sbjct: 116 VSAVWSMIKDEYSVSGGASGAIFGVVGALLVIVIRNR----GQLEDLNSRQLMLFAGFSI 171
Query: 277 AIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYE 311
G+ GIDN H+ G + GA + LL +Y
Sbjct: 172 YHGVTSAGIDNMAHISGFVIGALLGGLLYRRKRYR 206
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 137 LLAVNVLVY----IAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNVL+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVLILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIGVLF 128
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGPA 307
R L +I+ N+ G++ I+N H+GG L G + +++ P
Sbjct: 129 AAGFRKDTPYSLKPITGSALLPMIVINIIFGIMPGTNINNAAHIGGFLTGMLLGYMI-PL 187
Query: 308 LKYE 311
Y
Sbjct: 188 YDYS 191
>gi|290893553|ref|ZP_06556536.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
gi|290556898|gb|EFD90429.1| rhomboid family protein [Listeria monocytogenes FSL J2-071]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI +G++WRL T F+H+ H++ N +SL GP +E + G ++ VY + +A++
Sbjct: 50 NFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAAN 109
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+Y VG+SGAIFGL G + ++ ++++ +L + +++ + +
Sbjct: 110 LATYYIEPLEFAHVGSSGAIFGLFGIYLYMVVFRKDLINHMNAQL--ITTILVIGLVMTF 167
Query: 281 LIKGIDNWGHVGGLLGGAAISWLLGP 306
+ ++ H+ G L GA I+ L+ P
Sbjct: 168 INSNVNIVAHLFGFLAGAIIAPLVLP 193
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + HL N L +G +E G RYL +Y S +A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQEVVHLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N P++GASGA++GL G+ AV +MR N +++ + ++ N+A +
Sbjct: 192 YLLAAQNQPSLGASGAVYGLFGATAV-LMRRMNY------DMRPVLILLAVNLAFTFFNR 244
Query: 284 -GIDNWGHVGGLLGGAAIS 301
GI HVGGL+ G AI+
Sbjct: 245 DGIAWQAHVGGLIAGVAIA 263
>gi|295706593|ref|YP_003599668.1| membrane endopeptidase [Bacillus megaterium DSM 319]
gi|294804252|gb|ADF41318.1| membrane endopeptidase [Bacillus megaterium DSM 319]
Length = 506
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Query: 133 WTNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHL 187
+T I LA+ + +++ + +TQ+ L L +GAK N LI +G++WR T LH + HL
Sbjct: 180 FTYIFLALQIFMFLFLEWKSSTQNTLTLIQYGAKYNPLIMEGEWWRFFTPIILHIGLLHL 239
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
++N +L +G +E+I G R++ +Y + A S S+ + S + GASGAIFG G
Sbjct: 240 LMNSVALYYLGTLVERIYGSGRFVFIYIFAGFAGSLGSFIWNTSISAGASGAIFGCFG-- 297
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
A+ + N + +I+ N+ G + +DN GH+GGL+GG
Sbjct: 298 ALLFLARTNPRFFFRTMGSSFIVIIVINLIFGFVAPNVDNAGHIGGLVGG 347
>gi|404407774|ref|YP_006690489.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
gi|404241923|emb|CBY63323.1| rhomboid family protein [Listeria monocytogenes SLCC2376]
Length = 512
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|119962891|ref|YP_945847.1| rhomboid family membrane protein [Arthrobacter aurescens TC1]
gi|403525113|ref|YP_006660000.1| rhomboid family membrane protein [Arthrobacter sp. Rue61a]
gi|119949750|gb|ABM08661.1| putative rhomboid family membrane protein [Arthrobacter aurescens
TC1]
gi|403227540|gb|AFR26962.1| putative rhomboid family membrane protein [Arthrobacter sp. Rue61a]
Length = 284
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 127 LFIGRQW-TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-- 183
L +GR T +++ + LVY+ Q+ + ++ + WR+ T+AFLH+
Sbjct: 72 LAVGRPLVTFVIIGLCALVYVLQWIVPGDAVFEDFAFANIFAVSEPWRMVTAAFLHSQGF 131
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS----AMSYRFCNSPAVGASGA 239
+ H+++N Y+L G +E + G R+L VY SAI S A++ VGASGA
Sbjct: 132 LLHIVLNMYTLWIFGQALEPLLGRIRFLAVYLISAIGGSVGFLALTPTLPPVGVVGASGA 191
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
IFGL G+ V + RHR GG E + L +I N AIG + I H+GGL+ G
Sbjct: 192 IFGLFGAMLV-VQRHR---GG---ETKQLWVLIAINGAIGFFVPSIAWQAHLGGLITG 242
>gi|386008108|ref|YP_005926386.1| rhomboid family protein [Listeria monocytogenes L99]
gi|307570918|emb|CAR84097.1| rhomboid family protein [Listeria monocytogenes L99]
Length = 512
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
++ GQ WRL T+AFLH + HL +N +L G +E+ G RY+G+Y SA+ S
Sbjct: 85 VEFGQPWRLLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGLYLVSALGGSTAI 144
Query: 226 YRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
F + P GAS AI+GL+G+ V ++ R ++++ + ++ N+ I L
Sbjct: 145 QLFGDPLRPVAGASTAIYGLLGALGVLMLVRR-------QDIRGILVLLAINVFISFL-P 196
Query: 284 GIDNWGHVGGLLGGAAISWL 303
G+ GH+GGL+ GAA++ L
Sbjct: 197 GVSLLGHLGGLVTGAALAGL 216
>gi|422809417|ref|ZP_16857828.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
gi|378753031|gb|EHY63616.1| rhomboid family protein [Listeria monocytogenes FSL J1-208]
Length = 518
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + HL N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|445067421|gb|AGE14563.1| rhomboid [Triticum aestivum]
Length = 323
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W + ++ + Q WRL T +LHA + HL+ N SL +G +E+ G
Sbjct: 92 ATLQKLGALVW----DKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLVGLRLEQQFGF 147
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S MS F ++ +VGASGA+FGL+G+ + + I L
Sbjct: 148 VRVGVIYLVSGVGGSVMSSLFIRDNISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 207
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
L VI N+AIG+L +DN+ H+GG L G + ++L
Sbjct: 208 TLLFVIAVNLAIGIL-PHVDNFAHIGGFLTGFLLGFVL 244
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+LA+ +++I ++LWG + N + G++WRL T FLHA AHL+ N S
Sbjct: 21 ILAIQSVLWIFCKLPIHSVILWGDAVTGYNLGVANGEWWRLITPIFLHAGFAHLLFNSMS 80
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFI 251
+ P +E++ G R+L VY S I + +Y + VGASGAIFGL G + +
Sbjct: 81 IFLFAPALERLLGKARFLLVYVGSGIIGNVGTYFTESLDYVHVGASGAIFGLFGVYLYMV 140
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ + ++ +E + + +++ + + + I+ H+ GL+GG +S+L
Sbjct: 141 LYRKELI--DQENSKMIITLLVVAVLMTFINSNINVMAHLFGLVGGFVLSFL 190
>gi|281203068|gb|EFA77269.1| mitochondrial substrate carrier family protein [Polysphondylium
pallidum PN500]
Length = 800
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL GAK + G++WR + FLH I HL++N + +G +E+ G R + +Y
Sbjct: 587 LLNAGAKYTPAMLAGEWWRFFSPIFLHVGIFHLLMNLMTQVRVGMQLERAYGAHRIVPIY 646
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
+ + S F S GASGAIFG +G + R+ ++L L II
Sbjct: 647 LLCGVMGNLCSAIFLPQSVQAGASGAIFGFLGVLVTDLFRNWSLLASPFMNCCSLMFTII 706
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
+ A+GL + G+DN+ H GG + G S + P+L
Sbjct: 707 ISFAVGLFLPGVDNFAHFGGFVMGIMSSLIFLPSL 741
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 40 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 99
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 100 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 159
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ + ++R R + +I N+ + I GI HVGGL+ GAA
Sbjct: 160 GAMLIVVLRLR-------VSPAPVLTIIAINLVMSFSIPGISLAAHVGGLVFGAA 207
>gi|331676317|ref|ZP_08377029.1| outer membrane protein [Escherichia coli H591]
gi|417600998|ref|ZP_12251581.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|331076375|gb|EGI47657.1| outer membrane protein [Escherichia coli H591]
gi|345353483|gb|EGW85716.1| rhomboid family protein [Escherichia coli STEC_94C]
Length = 265
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGESWRLFSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVG- 245
+L +G E+I G R L ++ S + +S Y +S +VGASGAI G+ G
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGA 142
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+ A + + + L ++ + G GIDN H+GGL+ G A+ W
Sbjct: 143 ALATQLASGAGTYHKNQRRVFSLLGMVALTLLYGARQAGIDNACHIGGLIAGGAMGW 199
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 137 LLAVNVLVYIAQ-----FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+L N +++ F+T+D LL +GA+ +D G ++RL T+ F+H I
Sbjct: 9 ILLFNAFIFVMMTFSGVFSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGIL 68
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLV 244
H++ N Y+L G +E I G ++L YF + I + ++ F ++ +VGASGAIFGL+
Sbjct: 69 HILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLI 128
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWL 303
G R L +I+ N+ G L I+N H+GG L G + +
Sbjct: 129 GILFAAGFRKDTPFFMKPVTGMSLLPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYT 188
Query: 304 LGP 306
+ P
Sbjct: 189 MRP 191
>gi|160892518|ref|ZP_02073308.1| hypothetical protein CLOL250_00047 [Clostridium sp. L2-50]
gi|156865559|gb|EDO58990.1| peptidase, S54 family [Clostridium sp. L2-50]
Length = 338
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 27/182 (14%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T IL+ +N+LV+IA T+D + +L L++K Q++RL TS F H ++ H
Sbjct: 147 TPILVLLNILVFIAYVYTRDAYGYSFLEEILTDNLRYVLVEK-QYYRLLTSMFFHFSLTH 205
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIF 241
L+ N L ++G +E + G +Y+ VY I +S S C A GASGAI
Sbjct: 206 LLSNMVVLIALGARVEYLLGKVKYICVYLFCGIVASVCSIVSCYMGNFYEYAGGASGAIC 265
Query: 242 GLVGSFAVFIMRHRNILGGGK------EELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
GL+G VF G GK ++L L+ + I N G + +GIDN H+GGL+
Sbjct: 266 GLMGILIVFAF-----FGKGKISDISLKDLIFLSVITILN---GYVSEGIDNAAHIGGLI 317
Query: 296 GG 297
G
Sbjct: 318 AG 319
>gi|315605422|ref|ZP_07880463.1| rhomboid family protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312877|gb|EFU60953.1| rhomboid family protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 256
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 19/160 (11%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+L A++ S Q W + T AFLH I H+ N +L +G +E G R
Sbjct: 60 SVESSLMLVPARLMS-----QPWTILTGAFLHGGIMHIGFNMLTLYWVGRAIEPALGRWR 114
Query: 210 YLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGLVGSFAVFIMRHRNILGGGK 262
YL +Y SA+ SA +C PA VGASGA+FGL G AVF+++ +
Sbjct: 115 YLTIYLVSALGGSAFVIAWCLIQPAQIYVGTVGASGAVFGLFG--AVFVLQRLH-----G 167
Query: 263 EELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
+ + +++ N+A G + GI H+GGL+ GAA++W
Sbjct: 168 SDTTSIVALLVANLAYGFIASGISWQAHIGGLVVGAAVTW 207
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLL----LWGAKINSL------IDKGQFWRLATSAFL 180
R T IL+ +N+ V++A T D+L+ L G + + +GQ++RL T+AFL
Sbjct: 78 RLVTKILIGLNIAVWLAVLGTGDRLVDGFDLVGRAYDPGTADIVGVAEGQWYRLLTAAFL 137
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASG 238
H H+ N SL IG +E G RYL +Y S + SA+SY N P++GASG
Sbjct: 138 HQQPLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGSALSYLLAAQNQPSLGASG 197
Query: 239 AIFGLVGSFAVFIMR 253
A+FGL+G+ AV + R
Sbjct: 198 AVFGLLGATAVLMRR 212
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 137 LLAVNV----LVYIAQFATQDK---LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+ VNV L+ I +F ++ L++GA+ L+ GQ++R+ TS F+H HL+
Sbjct: 9 LIFVNVFILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMFVHGGFIHLIF 68
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFA 248
N Y+L +G +E + G ++L YF S I + A + NS +VGASGAIFGL+G
Sbjct: 69 NMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQIFYYNSFSVGASGAIFGLIGVLF 128
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGPA 307
R L +I+ N+ G++ I+N H+GG L G + +++ P
Sbjct: 129 AAGFRKDTPYSLKPITGSALLPMIVINIIFGIMPGTNINNAAHIGGFLTGMLLGYMI-PL 187
Query: 308 LKYE 311
Y
Sbjct: 188 YDYS 191
>gi|282851375|ref|ZP_06260740.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
gi|282557343|gb|EFB62940.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
Length = 241
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R I Q LA II N+A+ L ID GH+GGL+ G + + G
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGHLGGLISGFLLGIIFG 193
Query: 306 PA 307
A
Sbjct: 194 SA 195
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA + ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 97 LLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLV 156
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 157 YLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 216
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
+ N+A+G+L + +DN+ H+GGL+ G
Sbjct: 217 VVNLALGILPR-VDNFAHIGGLISG 240
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 9/189 (4%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
++L G + +I +G++WR T FLH + H++ N +SL GP +E++ G +L
Sbjct: 42 ERLYDLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFLI 101
Query: 213 VYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
Y + + ++ ++ F N P VGASGAIFGL G + ++ ++++ + Q +
Sbjct: 102 AYLGAGVLANITTF-FINPSFMFPHVGASGAIFGLFGIYIFMVVFRKSLI--DSQNAQIV 158
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI- 327
+ + + + + GI+ + H+ G G I+ L+ K F + R D I
Sbjct: 159 TVIFLIGLIMTFIRPGINQYAHILGFAAGFLIAPLVLVRAK-PFYASQYRRTHHDDGEIR 217
Query: 328 FHLIDWKRK 336
F+ WKRK
Sbjct: 218 FNPNRWKRK 226
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 22/190 (11%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDK-----LLLWGAKINSL-IDKGQFWRLATSAFLHAN 183
+ + NI L+A+NVL ++ AT ++ GA L I++G+++RL TS F+H
Sbjct: 9 KAYVNIGLIALNVLYFLFLEATGSSENTSFMVAHGAMYAPLVIERGEYYRLITSVFMHFG 68
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-----RFCNSPAVGASG 238
I+H+M N L +G +E+ G +YL Y + ++ +S + N + GASG
Sbjct: 69 ISHIMNNMLILFILGDNLERALGHIKYLFFYLICGVGANIVSMIVNLGEYRNVVSAGASG 128
Query: 239 AIFGLVGS--FAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
AIFG++G +AV I R R E+L + L +I+ ++ G G+DN H+ GL
Sbjct: 129 AIFGVIGGLLYAVIINRGR------LEDLSTRQLVVMIVCSLYFGFTSTGVDNAAHIAGL 182
Query: 295 LGGAAISWLL 304
L G + LL
Sbjct: 183 LIGIVMGILL 192
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G+++RL TS FLHAN+ H+ N SL IGP +E + G R++ VY +A + S
Sbjct: 138 VANGEWYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTS 197
Query: 226 YRFCN--SPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
Y F SPA +GASGAI + G V +R R IL G +A V++ N+ I L
Sbjct: 198 YWFMTPLSPASLGASGAISAVFGCLVVIGLR-RKILDPGM-----IAVVLVINIVIPLQN 251
Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAP---IFHLIDW 333
ID HVGG++ GA I + Y F + + RAP L++W
Sbjct: 252 TNIDWRDHVGGVVAGALIGAV------YAFAPELIGALGKARAPREQQVRLLNW 299
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 23/182 (12%)
Query: 134 TNILLAVNVLVYI------AQFATQDKLLLWG--AKINSLIDKG--QFWRLATSAFLHAN 183
T +L+ +NV V+ +F +Q +L+ + ++ ++ Q++RL T+ FLH
Sbjct: 91 TKVLIGLNVAVFALVLSLGERFVSQLELIGYAFSPQLGEIVGVAHDQWYRLLTAVFLHQE 150
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H++ N L +G +E G RR+L +Y S + S ++Y N P++GASGAIF
Sbjct: 151 LSHILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLVAEPNQPSLGASGAIF 210
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID-NW-GHVGGLLGGAA 299
GL+G+F V R +L V+I +++ L D +W GH+GGL+ GA
Sbjct: 211 GLMGAFVVLARR---------VQLDMRPVVLILGVSLVLTFTRPDISWEGHIGGLVTGAV 261
Query: 300 IS 301
I+
Sbjct: 262 IA 263
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+N+ L + +++Y +F+ KLL G ++ + G+++RL TS FLH N H+++N S
Sbjct: 166 SNVALWLCMILYFNRFS-DIKLLDVGGLVHFNVVHGEWYRLVTSMFLHYNFEHILMNMLS 224
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGS-FAVFI 251
L G +E + G + L +Y + I + +S F + +VGASGAIFGL+GS FA+
Sbjct: 225 LYIFGKIVESVLGSWKMLAIYLFAGIFGNFVSLSFNTTTISVGASGAIFGLIGSIFAILY 284
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ K+ + L ++ + + L + I+ H+GG +GG I+
Sbjct: 285 LSK----TFDKKVIGQLLIALVILIGLSLFMSNINVMAHLGGFVGGLLIT 330
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
++WRL TS FLH +I H+ VN SL +G +E I G R+L VY + SA
Sbjct: 41 EYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPILGTARFLLVYLVALFGGSAAVTLLS 100
Query: 229 -CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ GASGAI+GL+G+ V +++ K + +I N+ I + + GI
Sbjct: 101 GTNTATAGASGAIYGLMGAMLVIVLKF-------KAPAGQVIAIIAVNIFISISVPGISL 153
Query: 288 WGHVGGLLGG--AAISWLLGPAL 308
GH+GGLL G A ++ L P L
Sbjct: 154 VGHLGGLLFGTLATVAALYLPEL 176
>gi|419012186|ref|ZP_13559551.1| rhomboid family protein [Escherichia coli DEC1D]
gi|377862951|gb|EHU27758.1| rhomboid family protein [Escherichia coli DEC1D]
Length = 625
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 22/183 (12%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
Query: 247 FAVFIM------RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ H+N + + L ++ + G GIDN H+G L+ G A+
Sbjct: 143 AIATQLASGAGTHHKN-----QRRVFPLLGMVALTLLYGTRQTGIDNACHIGDLIAGGAL 197
Query: 301 SWL 303
WL
Sbjct: 198 GWL 200
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 8/178 (4%)
Query: 136 ILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 163 IILNVVIWLFMVLFLNRSSDLKLLDIGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 222
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 223 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 282
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ ++ + L V++ + + L ++ I+ H+GG +GG I+ L+G K
Sbjct: 283 YIGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAHIGGFIGGLLIT-LMGYYFK 336
>gi|347548722|ref|YP_004855050.1| hypothetical protein LIV_1288 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981793|emb|CBW85766.1| Putative yqgP [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 512
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR T FLH+ + HL N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 ILGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAV 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ + + ID GH+GGL GG
Sbjct: 329 NLLLDVFSSQIDIAGHIGGLAGG 351
>gi|218186222|gb|EEC68649.1| hypothetical protein OsI_37086 [Oryza sativa Indica Group]
Length = 773
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 155 LLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA + ++ Q WRL T +LHA + HL++N L IG +E+ G R V
Sbjct: 97 LLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLV 156
Query: 214 YFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S MS F S +VGASGA+FGL+GS ++ + ++ L L VI
Sbjct: 157 YLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLTLVFVI 216
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ N+A+G+L + +DN+ H+GGL+ G +LLG
Sbjct: 217 VVNLALGILPR-VDNFAHIGGLISG----FLLG 244
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 8/178 (4%)
Query: 136 ILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
I+L V + +++ F + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 167 IILNVVIWLFMVLFLNRSSDLKLLDVGGLVHFNVVHGEWYRLITSIFLHYNFEHILMNML 226
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R +Y + + + S F ++ +VGASGAIFGL+G+ F+
Sbjct: 227 SLFIFGKIVESIVGHWRMFVIYLVAGLFGNFASLSFNTDTVSVGASGAIFGLIGAIFTFM 286
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ ++ + L V++ + + L ++ I+ H+GG +GG I+ L+G K
Sbjct: 287 YIGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAHIGGFIGGLLIT-LMGYYFK 340
>gi|297193265|ref|ZP_06910663.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151714|gb|EFH31321.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 299
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 21/187 (11%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID----------KGQFWRLATSAFL 180
R T I+LA+N+ V+ +D+ + I D G+++RLAT+ FL
Sbjct: 85 RLITKIILALNIAVFGLALGLEDEFVNRFTMIGYAYDPSLAEVVGVADGEWYRLATAMFL 144
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---VGAS 237
H H+ N L +G +E+ G RYL +Y S +A SA +Y SPA +GAS
Sbjct: 145 HETTWHIFFNMLLLWWLGGPLEEALGRVRYLALYLISGLAGSAFTY-LIESPAQGSLGAS 203
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GAI+GL+G+ V + R R ++L+ + +I N+ I GI H+GGL+ G
Sbjct: 204 GAIYGLLGATVVLMRRMR-------QDLRPIMVLIAINLVITFYWAGIAWQAHIGGLVAG 256
Query: 298 AAISWLL 304
I++ L
Sbjct: 257 VVIAYGL 263
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 11/130 (8%)
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
G++WRL T+ FLH ++ HL VN SL +G ++E GPR+Y VY ++ SA +
Sbjct: 53 GEYWRLLTAGFLHLSLIHLGVNMLSLYVLGVSLEPALGPRQYTAVYLTALFGGSA-AVSM 111
Query: 229 CNSPAV---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
P GASGAI+GL+G+ + ++R R + + +I N+ + L + I
Sbjct: 112 LGEPTTMTAGASGAIYGLMGALLILVLRAR-------MSVAPVVGIIAINVVLSLTLPNI 164
Query: 286 DNWGHVGGLL 295
H+GGL+
Sbjct: 165 SILAHLGGLI 174
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 134 TNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ +N++V++ + + L+ +GA L+ G++WRL T++F+H H++
Sbjct: 14 TSVLMVINIIVFVLMSLSGGSENIENLIRFGANSKILVAHGEWWRLITASFIHIGFFHIL 73
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
N Y S+GP E++ G +L +Y S I + +S+ + V GAS +++G++G
Sbjct: 74 FNMYFFYSLGPIFERLFGSFNFLIIYLISGIFGNLLSFALGSPYTVSAGASTSLYGMLGL 133
Query: 247 FAVFIMRHRNILGGGKEEL-----QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ +RN +E+ +++ N+ LL G+ +GH+GG + G ++
Sbjct: 134 AIGLMATYRN------DEIIRSFGASFISIVVINVVYSLLAPGVGVYGHLGGFIAGFLLA 187
Query: 302 WLLGPALKYEFTS 314
+ P L E +S
Sbjct: 188 GIF-PILAREISS 199
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 476 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 507
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 22/174 (12%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVN++++ Q A+ + L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 80 TYVLIAVNLVMFALQMASPNLERALGLWPPAA----ADGELYRLVTSAFLHFSVTHIAFN 135
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +GP +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 136 MLALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 193
Query: 250 FIM-RHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGG 297
F++ R N+ +++ + +I N+A LI + I GH+GGL+ G
Sbjct: 194 FVVGRKLNM------DVRSVLAIIGLNLAFTFLIPLFTSQNISWQGHIGGLVTG 241
>gi|326532882|dbj|BAJ89286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT KL L+W ++ + Q WRL T +LHA + HL+ N SL +G +E+ G
Sbjct: 94 ATLQKLGALVW----EKVVHEQQGWRLVTCIWLHAGVVHLLANMLSLVLVGLRLEQQFGF 149
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S MS F ++ +VGASGA+FGL+G+ + + I L
Sbjct: 150 VRVGVIYLVSGVGGSVMSSLFIRDNISVGASGALFGLLGAMLSELFTNWTIYTNKAAALV 209
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
L VI N+AIG+L +DN+ H+GG L G + ++L
Sbjct: 210 TLLFVIAVNLAIGIL-PHVDNFAHIGGFLTGFLLGFVL 246
>gi|326692732|ref|ZP_08229737.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINS--LIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+ V V++ Q A L+ GAK ID Q+WRL T FLHA H++ N +L
Sbjct: 25 MFVVEVIMGHGQIANGQLLVTLGAKWGPGIAIDH-QYWRLLTPIFLHAGWLHIITNMLTL 83
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMR 253
IGP E + G R++LG+Y + + MSY F + +VGAS A+FGL G +F +
Sbjct: 84 WFIGPLAEAVFGHRKFLGLYLFGGVVGNIMSYLFAPLTVSVGASTALFGLFGGLLMFASQ 143
Query: 254 HR---NILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
R IL GK L + N+ +G G+D W
Sbjct: 144 FRHDPEILAQGKTLLLFVG----LNLVMGFGANGVDMW 177
>gi|47095921|ref|ZP_00233524.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912011|ref|ZP_05262023.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|254936338|ref|ZP_05268035.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|258611432|ref|ZP_05232285.2| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|386043648|ref|YP_005962453.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|386046989|ref|YP_005965321.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|386050313|ref|YP_005968304.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|386053590|ref|YP_005971148.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
gi|47015667|gb|EAL06597.1| rhomboid family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599975|gb|EEW13300.1| rhomboid family protein [Listeria monocytogenes FSL N3-165]
gi|258608928|gb|EEW21536.1| rhomboid family protein [Listeria monocytogenes F6900]
gi|293589976|gb|EFF98310.1| rhomboid family protein [Listeria monocytogenes J2818]
gi|345533980|gb|AEO03421.1| rhomboid family protein [Listeria monocytogenes J0161]
gi|345536882|gb|AEO06322.1| rhomboid family protein [Listeria monocytogenes 10403S]
gi|346424159|gb|AEO25684.1| rhomboid family protein [Listeria monocytogenes FSL R2-561]
gi|346646241|gb|AEO38866.1| rhomboid family protein [Listeria monocytogenes Finland 1998]
Length = 518
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 217 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 277 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 334
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 335 NLLIDVFSSQIDIAGHIGGLVGG 357
>gi|58337771|ref|YP_194356.1| hypothetical protein LBA1506 [Lactobacillus acidophilus NCFM]
gi|58255088|gb|AAV43325.1| putative membrane protein [Lactobacillus acidophilus NCFM]
Length = 226
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 136 ILLAVNVLV--YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCY 192
I+L V LV ++ + L+ GA N + G Q+WRL T+ FLH + HL+ N
Sbjct: 18 IILVVVFLVEMFLGGSENVNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGVMHLVSNAV 77
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVF 250
+ +G ME I G R+L Y + I + MS F + GAS A+FGL G+
Sbjct: 78 IIYYMGQYMEPIMGHTRFLVTYLLAGIGGNLMSLAFSADRGLSAGASTALFGLFGAMTAI 137
Query: 251 IMRH-RNILGGGKEELQHLAKVI-IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+R+ RN + L A V+ + N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 138 GLRNFRNPM---ISYLGRQALVLALINLALDIFVPGIDIWGHIGGLIAGFLLAIILG 191
>gi|227904420|ref|ZP_04022225.1| Rhomboid family protein [Lactobacillus acidophilus ATCC 4796]
gi|227867795|gb|EEJ75216.1| Rhomboid family protein [Lactobacillus acidophilus ATCC 4796]
Length = 226
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
Query: 137 LLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVN 190
+L + V+V++ + + L+ GA N + G Q+WRL T+ FLH + HL+ N
Sbjct: 16 ILIILVVVFLVEMFLGGSENVNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGVMHLVSN 75
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFA 248
+ +G ME I G R+L Y + I + MS F + GAS A+FGL G+
Sbjct: 76 AVIIYYMGQYMEPIMGHTRFLVTYLLAEIGGNLMSLAFSADRGLSAGASTALFGLFGAMT 135
Query: 249 VFIMRH-RN--ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+R+ RN I G++ L + + N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 136 AIGLRNFRNPMISYLGRQAL----VLALINLALDIFVPGIDIWGHIGGLIAGFLLAIILG 191
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 134 TNILLAVNVLVYIAQF---ATQD--KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T+++L +N++++I +T D ++ +GA ++WR S FLH HL+
Sbjct: 19 TSLILIINIVLFIIMEVVGSTSDMATMINFGAMFRLSGFSPEWWRYFASMFLHFGFMHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGS 246
+NC++L P +E++ G RYL Y S + S +SY + V GASGA++G+ +
Sbjct: 79 MNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLLMSERTVSAGASGAVYGVFAA 138
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ + +++L + Q + ++I + LL G+ +GH+GG +GG A+
Sbjct: 139 YLFLAIFRKDVLDA--QSGQTIKTILIVGLIYSLL-PGVSFFGHLGGFIGGFAL 189
>gi|16803377|ref|NP_464862.1| hypothetical protein lmo1337 [Listeria monocytogenes EGD-e]
gi|284801722|ref|YP_003413587.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284994864|ref|YP_003416632.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404283828|ref|YP_006684725.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404410635|ref|YP_006696223.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|405758384|ref|YP_006687660.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|16410753|emb|CAC99415.1| lmo1337 [Listeria monocytogenes EGD-e]
gi|284057284|gb|ADB68225.1| hypothetical protein LM5578_1476 [Listeria monocytogenes 08-5578]
gi|284060331|gb|ADB71270.1| hypothetical protein LM5923_1429 [Listeria monocytogenes 08-5923]
gi|404230461|emb|CBY51865.1| rhomboid family protein [Listeria monocytogenes SLCC5850]
gi|404233330|emb|CBY54733.1| rhomboid family protein [Listeria monocytogenes SLCC2372]
gi|404236266|emb|CBY57668.1| rhomboid family protein [Listeria monocytogenes SLCC2479]
gi|441471011|emb|CCQ20766.1| Rhomboid protease gluP [Listeria monocytogenes]
gi|441474138|emb|CCQ23892.1| Rhomboid protease gluP [Listeria monocytogenes N53-1]
Length = 512
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|404413413|ref|YP_006699000.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
gi|404239112|emb|CBY60513.1| rhomboid family protein [Listeria monocytogenes SLCC7179]
Length = 512
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH+ + H+ N L +G E+I G RY+ +
Sbjct: 211 LIKWGGKFNPLIYAGEWWRFISPIFLHSGLMHIASNAVMLYIVGAWAERIYGKWRYVLIL 270
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 271 LLGGICGNIASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 328
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 329 NLLIDVFSSQIDIAGHIGGLVGG 351
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 476 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 507
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 476 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 507
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 476 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 507
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 128 FIGRQWTNILLAVNVLVYIAQ------FATQDKLL-LWGAKINSLIDKGQFWRLATSAFL 180
F G TN +L V V+ Y+ + F ++L GA+ N I G++WRL T FL
Sbjct: 27 FHGNWMTNAILFVTVVAYLVEVLLSGSFNINGQVLEQLGARWNPDIIAGEWWRLFTPIFL 86
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGA 239
H I H+ N +L G +E++ G ++L +Y S + + +S F N+ + GAS +
Sbjct: 87 HVTIYHIAFNMAALMYAGTIVEEVYGHFKFLLIYLFSGFSGNLISAFFKPNTISAGASTS 146
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLL 295
+FGL A+ ++ G K + L+K +I+ N+ L + +D GH+GGL+
Sbjct: 147 LFGLFAVIALL-----QVVSGFKHQFTELSKGAVVLIVANLVFNLFMPSVDIAGHLGGLV 201
Query: 296 GGA 298
GGA
Sbjct: 202 GGA 204
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T L+A+NV+V+ LL G + + GQ+WRL T+ FLH ++ H
Sbjct: 78 TYTLIAINVVVFAYTIYAAHSFNVEVSGPLLHGELVRGNVFLGQYWRLLTAGFLHYSLIH 137
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYRFCNSPAVGASGAIFGLV 244
L VN SL +G +E G R++ VY ++ + SA M + + + GASGAI+GL+
Sbjct: 138 LAVNMISLYILGRDLEIALGIGRFVMVYMTALLGGSAAVMIAQSNEARSAGASGAIYGLM 197
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
G+ + ++R R + +I N+ + I GI HVGGL+ GAA
Sbjct: 198 GAMLIVVLRLR-------VSPAPVLTIIAINLVMSFSIPGISLAAHVGGLVFGAA 245
>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis]
gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]
Length = 325
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL T +LHA I HL+ N L IG +E+ G R +Y S A S +S F
Sbjct: 110 QGWRLVTCIWLHAGIIHLLANMLCLVFIGVRLEQQFGFVRIGIIYLVSGFAGSVLSSLFI 169
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
NS +VGASGA+FGL+G+ ++ + + L L +I N+AIG+L +DN+
Sbjct: 170 RNSISVGASGALFGLLGAMLSELITNWTLYTNKAAALLTLLVIIAINLAIGIL-PHVDNF 228
Query: 289 GHVGGLLGGAAISWLL 304
H+GG L G + ++L
Sbjct: 229 AHIGGFLSGFLLGFIL 244
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G R
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMK 145
Query: 262 KEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGP 306
L +I+ N+ G L I+N H+GG L G + + + P
Sbjct: 146 PVTGVSLLPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMSP 191
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 149 FATQDK------LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
F+T+D LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E
Sbjct: 26 FSTRDPVLQMLLLLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVE 85
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
I G ++L YF + I + ++ F ++ +VGASGAIFGL+G R
Sbjct: 86 DIYGTEKFLVGYFFTGIVGNLATHVFYHDTISVGASGAIFGLIGILFAAGFRKDTPFFMK 145
Query: 262 KEELQHLAKVIIFNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGP 306
L +I+ N+ G L I+N H+GG L G + + + P
Sbjct: 146 PVTGMSLLPIILINVVYGFLPGTNINNAAHLGGFLSGMLLGYTMRP 191
>gi|116630012|ref|YP_815184.1| membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311110357|ref|ZP_07711754.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
gi|116095594|gb|ABJ60746.1| Membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311065511|gb|EFQ45851.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
Length = 228
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R I Q LA II N+A+ L ID GH+GGL+ G + + G
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGHLGGLISGFLLGIIFG 193
Query: 306 PA 307
A
Sbjct: 194 SA 195
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 134 TNILLAVNVLVYIAQFA-TQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+IL+A++V+++ F LW I N+ + G++WRL + LH H+++N
Sbjct: 18 VSILVALHVVIWFTFFLRIPIAEPLWEKMIGFNAAVQNGEYWRLVSPLVLHVRFEHMIIN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV----GASGAIFGLVGS 246
SL GP +EK+ G ++L +Y S I ++ + F PA+ GASGAIFGL G
Sbjct: 78 SISLILFGPALEKMLGKSKFLLLYIGSGICANIAT--FFVLPAMYSHAGASGAIFGLFGM 135
Query: 247 FAVFIMRHRNILGGGKEELQH---LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ I+ R+I+ E QH L VI ++ I ++ H+ G LGG I+
Sbjct: 136 YGYLIVFCRDII-----ETQHARLLFAVICISLFISFTAPNVNMVAHLFGFLGGGIIA 188
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 291 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 348
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 349 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 408
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
I+ + GL GIDN H+GGL+GG + +L
Sbjct: 409 ILTGLLWGLF-GGIDNASHIGGLVGGTILGIIL 440
>gi|262375829|ref|ZP_06069061.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309432|gb|EEY90563.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 272
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 40/210 (19%)
Query: 134 TNILLAVNVLVY---------IAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
T IL+ +NV ++ ++Q +T+D +L WGA L + RL +S F H +
Sbjct: 21 TAILIGINVGLFGWQAINGMDVSQPSTRDAIL-WGADYAPLTYLAEPMRLFSSMFFHFGL 79
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM--------SYRFCNS----- 231
HLM+N ++L G E++ G ++G+Y + + S + SYR
Sbjct: 80 IHLMLNMWALYIFGSVAEQLFGRMYFIGLYMCAGLMGSLLSGYMNIQDSYRLIEGGVANP 139
Query: 232 ---PAV--GASGAIFGLVGSFAVFIM-----RHRNILGGGKEELQHLAKVIIFNMAIGLL 281
PAV GASGA+ GL S V + + R IL + + L V+ N+A+G +
Sbjct: 140 DLLPAVSAGASGAVMGLGASLTVLALLPMLPQQRFIL-----DKKTLVMVMGLNLALGFM 194
Query: 282 IKGIDNWGHVGGLLGGAAIS--WLLGPALK 309
I GI+N H+GG+L GA ++ W +G ++
Sbjct: 195 ISGINNAAHIGGMLMGAFLTLLWYIGQKMQ 224
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N+ + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S I + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++I + + I+ H+ GL GG +S+L
Sbjct: 156 MTLLIIAVLSTFINSNINIMAHLFGLAGGFLLSFL 190
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVY---AYLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDD 316
I GH+ G++GG + L+ Y F +
Sbjct: 171 PSISLSGHISGMIGGFIATLLIINLCLYAFGKEK 204
>gi|317500904|ref|ZP_07959115.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089196|ref|ZP_08338098.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439355|ref|ZP_08618969.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897702|gb|EFV19762.1| rhomboid protease GluP [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405748|gb|EGG85277.1| hypothetical protein HMPREF1025_01681 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016163|gb|EGN45955.1| hypothetical protein HMPREF0990_01363 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 200
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHL 187
T +L+ +NV V++ D +L GA I +GQ ++R+ T FLH I HL
Sbjct: 10 TTVLIVINVAVFLILSMLGDTEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFG 242
M N L ++G +E G R++ +YF S I + +S S + GASGA+FG
Sbjct: 70 MNNMVMLGALGWNLELEIGKLRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGAVFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
L+G+ ++ +R L G+ + + +++ ++ GL G+DN H+GGL+ G +
Sbjct: 130 LMGALLYVVIANRGRL--GQLSGRGMIFMVVLSLYFGLTSSGVDNMAHIGGLICGFIFAV 187
Query: 303 LL 304
+L
Sbjct: 188 IL 189
>gi|148906261|gb|ABR16286.1| unknown [Picea sitchensis]
Length = 383
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++ + Q WRL T +LHA + HL+ N SL IG +E+ G R VY SA S
Sbjct: 114 QKVVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGS 173
Query: 223 AMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N +VGASGA+FGL+G+ ++ + I L L +I+ N+A GLL
Sbjct: 174 VLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLL 233
Query: 282 IKGIDNWGHVGGLLGG 297
+DN+ H+GG + G
Sbjct: 234 -PHVDNFAHIGGFISG 248
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 16/181 (8%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T +L+ +N+ V+ T + ++ +GA + L +G++WR T+AF+H H
Sbjct: 10 KVTTVLMIINIAVFAIMTLTGGSESIENIVRFGAMVKPLFYQGEWWRALTAAFIHIGFFH 69
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
++ N Y L +IGP E++ G +L +Y + + + +Y F N+ + GAS +++G+
Sbjct: 70 ILFNMYFLYNIGPLFERLYGSINFLIIYILAGVLGNLFTYAFGGANTVSAGASTSLYGMF 129
Query: 245 GSFAVFIMRHRNILGGGKEELQHLA----KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
G ++ +++ E L+ L +I+ N+ LL GI GH+GG L G +
Sbjct: 130 GLAIGLMINYKD-----DEILRGLGASFISIIVINIVYSLLAPGIGIQGHMGGFLAGVLL 184
Query: 301 S 301
+
Sbjct: 185 A 185
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G+ WRLAT F+H+ H++ N +SL GP +E+I G ++ G+Y + I
Sbjct: 47 AGVNLFIREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGI 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+++ + VG+SGAIFGL G FA ++++ +E Q + + + +
Sbjct: 107 SANVATLLLEPLTYTHVGSSGAIFGLFGFFAAVAYFRKDLM--SRENSQIIITIAVIGLI 164
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWL 303
+ + I+ H+ G + G I L
Sbjct: 165 MTFIQPNINISAHIFGFISGFLIGAL 190
>gi|168002718|ref|XP_001754060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694614|gb|EDQ80961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 579
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 133 WTNILLAVNVLVYIAQFATQDKL---------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+ N L+A+N+ VY+ A+ ++ L+GAK+N LI G +WRL T FLH+
Sbjct: 324 FVNGLVALNIAVYLFGLASPLEVPGMVDASLPYLYGAKVNELIVNGDWWRLVTPMFLHSG 383
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGL 243
+ HL ++ ++L GP +E G + +Y + +S+ VG SG IF L
Sbjct: 384 LLHLGLSTWALLEFGPAVESAYGTLGFTMIYLLGGAYGNLLSFFHTPQGTVGGSGPIFAL 443
Query: 244 VGSFAVFIMRHRNILG---GGKEELQHLAKVIIFNMAIGLLIKG--IDNWGHVGGLLGGA 298
+ ++ V+I+R+R+I+G G + + KVIIF L +D+W H+G + G
Sbjct: 444 MAAWVVYILRNRDIIGLDVAG----EIVRKVIIFTAITYALCNSFPVDDWTHLGAAISGL 499
Query: 299 AISWLLGPALK 309
+ L P ++
Sbjct: 500 SFGLLTCPLVR 510
>gi|300767209|ref|ZP_07077121.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|380032412|ref|YP_004889403.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|418275176|ref|ZP_12890499.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495028|gb|EFK30184.1| S54 family peptidase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|342241655|emb|CCC78889.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
WCFS1]
gi|376008727|gb|EHS82056.1| membrane-bound protease, rhomboid family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 227
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLVFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + + N+ + GID WGH
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVYA---YLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGHVGGLLGG 297
I GH+ G++GG
Sbjct: 171 PSISLSGHISGMIGG 185
>gi|163790986|ref|ZP_02185408.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
gi|159873725|gb|EDP67807.1| small hydrophobic molecule transporter protein, putative
[Carnobacterium sp. AT7]
Length = 235
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T + LA+ +L ++ T D LL +GAK N I G++WRL T FLH H
Sbjct: 19 TYLFLAIQILAFV--LMTLDGGSTNMVTLLKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 76
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 77 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 136
Query: 247 FAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGID 286
+ ++ +Q +AK +II N+ G+ ID
Sbjct: 137 TIMLGQTFKH-----NPAIQQMAKSFGTLIIINIIFGVFSSSID 175
>gi|300361225|ref|ZP_07057402.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
gi|300353844|gb|EFJ69715.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
Length = 228
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNAILIVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + IG ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYIGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R I Q LA II N+A+ L ID GH+GGL+ G + + G
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGHLGGLISGFLLGIIFG 193
Query: 306 PA 307
A
Sbjct: 194 SA 195
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 134 TNILLAVNVLVYIAQF-ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
T ++A+ VL+Y+ A KL L A + + + W + T AFLH I H++ N
Sbjct: 77 TYAMMAICVLMYVVTLLAPTTKLSL--ALVPAWL-MAHPWTVLTGAFLHGGIMHILFNML 133
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGLVG 245
SL +G +E + G R+L +Y SA+ SA +C P+ VGASGA+FGL G
Sbjct: 134 SLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWCLIQPSEIFVSTVGASGAVFGLFG 193
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
AVF+++ LGG + + ++ N+ G ++ GI GH+GG + G +W+L
Sbjct: 194 --AVFVLQR---LGG--SDTTAILTLLGINLVYGFMVSGISWQGHIGGAIAGVGATWVL 245
>gi|254556483|ref|YP_003062900.1| hypothetical protein JDM1_1316 [Lactobacillus plantarum JDM1]
gi|308180426|ref|YP_003924554.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448821092|ref|YP_007414254.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
gi|254045410|gb|ACT62203.1| integral membrane protein [Lactobacillus plantarum JDM1]
gi|308045917|gb|ADN98460.1| integral membrane protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|448274589|gb|AGE39108.1| Membrane-bound protease, rhomboid family [Lactobacillus plantarum
ZJ316]
Length = 227
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T +LL + V V++ ++ D +L GAK N I GQ+WRL T FLH + H+ +
Sbjct: 15 TQVLLGITVAVFLVEWLMGDGAMLIFNSLGAKNNQAIAAGQWWRLVTPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ N+ +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLAIYILGGISGNIMSFALSNNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ I ++ + + N+ + GID WGH
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTVLNLVFDMFSNGIDIWGH 174
>gi|442323116|ref|YP_007363137.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
gi|441490758|gb|AGC47453.1| S54 family peptidase [Myxococcus stipitatus DSM 14675]
Length = 518
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCY 192
+L+ ++ L++ D L+ WGAK L+ + GQ WRL T+ LH ++ HL++N
Sbjct: 10 AGVLVGLHGLLWSQGPVDVDALVRWGAKAGPLVLEAGQVWRLLTANLLHRDVLHLLLNVT 69
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
L + G +E++C YL + A+ + A S + + +VGASG ++G +G+ V
Sbjct: 70 VLVAAGSALERVCRRSDYLAFLVTVALTTMASSLAWSGAVSVGASGLVYGCLGALLVLGR 129
Query: 253 RHRNI-----LGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
RHR++ L G L V++F + +G G+DN
Sbjct: 130 RHRSLFRVRWLSGES----ALPTVLVF-LWMGWTSVGVDN 164
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 137 LLAVNVLVYI---AQFATQDK----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
L+AVNVLV++ AQ D L G + S + G++WRL T+ FLH ++ H+ V
Sbjct: 74 LIAVNVLVFLLCAAQAGFGDPGAAPLFAEGDLLKSDVASGEYWRLLTAGFLHFSVMHIAV 133
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF 247
N SL +G +E G RYL +Y + + SA F AV GASGAI+GL+G+
Sbjct: 134 NMLSLYILGRDLELALGMFRYLAIYLIALLGGSAAVMLFEADRAVTAGASGAIYGLMGAM 193
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V I++ R + +I FN+ + + GI GH
Sbjct: 194 LVIILKAR-------VSPVPVLSIIAFNVVLSFSLPGISVLGH 229
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS-FAVFIMRHRNILGG--GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
L+GS A++ + + NI+ G++ L I N+ + + +D GH+GG + G
Sbjct: 136 LMGSVLALYFLNNDNIIAVIIGRQAFLLL----ICNIVVDFFMPSVDIIGHIGGTITGFL 191
Query: 300 ISWLLGP 306
++ +LG
Sbjct: 192 LTIILGS 198
>gi|315282195|ref|ZP_07870654.1| rhomboid family protein, partial [Listeria marthii FSL S4-120]
gi|313614157|gb|EFR87842.1| rhomboid family protein [Listeria marthii FSL S4-120]
Length = 302
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ WG K N LI G++WR + FLH + HL N L +G E+I G RY+ +
Sbjct: 1 LIKWGGKFNPLIYAGEWWRFISPIFLHNGLMHLASNAVMLYIVGAWAERIYGKWRYILIL 60
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
I + S+ + +VGAS A+F ++G+ ++ N+ K +A ++
Sbjct: 61 LLGGICGNVASFALNMNLSVGASTAVFAVMGALLYLVVLKPNLY--AKTIGVSIASLVAI 118
Query: 275 NMAIGLLIKGIDNWGHVGGLLGG 297
N+ I + ID GH+GGL+GG
Sbjct: 119 NLLIDVFSTQIDIAGHIGGLVGG 141
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+LL G N + G++WRL T FLH++ H++ N +SL GP +E++ G ++
Sbjct: 39 QQLLYLGIGSNYDVYNGEYWRLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFII 98
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y S + ++ +Y N +G+S AIFGL G + ++ ++++ + Q +
Sbjct: 99 TYLLSGVLANIGTYFVAPINYYHLGSSSAIFGLFGVYLYMVIYRKDLI--DRMNSQIIIS 156
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+++ M + I+ + H+ GL+GGAA++
Sbjct: 157 ILVIGMVMTFFRSDINIYAHIFGLIGGAALA 187
>gi|395243825|ref|ZP_10420804.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
gi|394483875|emb|CCI81812.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
Length = 227
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 10/192 (5%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLI--DKGQFWRLATSA 178
++NL I IL+ + V+ + F +T +LL +N+LI + QFWRL T+
Sbjct: 5 KSNLPIPYMTFAILIILLVVFLVETFTGGSTNAAVLLRLGAMNNLIVASQDQFWRLFTAQ 64
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVG 235
FLH HL N + +G +E I G R+L +Y S + + +S+ C S A G
Sbjct: 65 FLHIGWLHLASNAVMIYYVGQYLEPIIGSWRFLLIYLLSGVGGNLLSFA-CGSDYSVAAG 123
Query: 236 ASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
AS A+FGL G+ +++ I Q LA II N+ + L +K ID GH+GGL
Sbjct: 124 ASTALFGLFGAIIAIYFKNKQIPAIFALGRQALALAII-NLFLDLFMKDIDILGHIGGLA 182
Query: 296 GGAAISWLLGPA 307
G +S +G A
Sbjct: 183 AGFFLSIAIGNA 194
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 22/181 (12%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T ++A+ VL+Y+ T+ L L A++ + W + T AFLH I H++ N
Sbjct: 16 TYAMMAICVLMYVVTLLVPTTKLSLALVPARLMA-----HPWTVLTGAFLHGGIMHILFN 70
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGL 243
SL +G +E + G R+L +Y SA+ SA +C P+ VGASGA+FGL
Sbjct: 71 MLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWCLIQPSEIFVSTVGASGAVFGL 130
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G AVF+++ LGG + + ++ N+ G ++ GI GH+GG + G +W+
Sbjct: 131 FG--AVFVLQR---LGG--SDTTAILTLLGINLVYGFMVSGISWQGHIGGAIAGVCATWV 183
Query: 304 L 304
L
Sbjct: 184 L 184
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
+++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N SL G +
Sbjct: 1 MILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNMLSLFIFGKIV 59
Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGG 260
E I G R L VYF + + + +S F + +VGASGAIFGL+GS + +
Sbjct: 60 EAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMMYVSKTF--- 116
Query: 261 GKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
K+ L L ++ + + L + I+ H+GG +GG I+ +
Sbjct: 117 NKKMLGQLLIALVILVGVSLFMSNINIVAHIGGFIGGLLITLI 159
>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]
Length = 325
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 164
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F NS +VGASGA+FGL+G+ ++ + ++ L L ++ N+ +G+L +
Sbjct: 165 SSLFIQNSISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPR 224
Query: 284 GIDNWGHVGGLLGGAAISWLLGP 306
++N+ H+GG + G + ++L P
Sbjct: 225 -VNNFAHIGGFVTGFFLGFILMP 246
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N L +G T+E++ G R +Y S + + +S + + GAS IFGL G+F
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVHPVTISAGASTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
R Q+L VII N+ L+ GID +GH+GGL+GG L+G
Sbjct: 131 LFMGSEFRQYPALRGLARQYLILVII-NLVYDLIAPGIDIFGHLGGLVGGFLACALVG 187
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF- 228
Q+WRL ++ F+H I H+ NCYSL ++G ME + G +RYL + +SA+A++ + F
Sbjct: 54 QYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTILPTVFY 113
Query: 229 ------CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+S G SGAIFGL+G+ + +++ + ++ ++ + I +L+
Sbjct: 114 ILTGNGASSIMGGISGAIFGLMGALLALAWKFKDVYA---YLFKQISSSVLLMLLISILV 170
Query: 283 KGIDNWGHVGGLLGG 297
I GH+ G++GG
Sbjct: 171 PSISLSGHISGMIGG 185
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + +G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S I + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LIVYIASGIIGNIGTYLVEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+++ + + I+ H+ GL GG +S+L
Sbjct: 156 MTLLVIAVLSTFINSNINIMAHLFGLAGGFLLSFL 190
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 134 TNILLAVNVLVYI----AQFATQDKLLL-WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+ V VLVY+ A AT LL GA + GQ+WR+ T+AFLH + HL
Sbjct: 11 TCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLHIGLTHLF 70
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSF 247
+N L +G T+E++ G R +Y S + + +S + + GAS IFGL G+F
Sbjct: 71 LNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVQPVTISAGASTGIFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
R Q+L VII N+ L+ GID +GH+GGL+GG L+G
Sbjct: 131 LFMGSEFRQYPALRGLARQYLILVII-NLVYDLIAPGIDIFGHLGGLVGGFLACALVG 187
>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]
Length = 324
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ K Q WRL T +LHA I HL+VN SL IG +E+ G R +Y S S +
Sbjct: 104 VVSKHQGWRLVTCIWLHAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVL 163
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F NS +VGASGA+FGL+G+ ++ + ++ L L ++ N+ +G+L +
Sbjct: 164 SSLFIQNSISVGASGALFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPR 223
Query: 284 GIDNWGHVGGLLGGAAISWLLGP 306
++N+ H+GG + G + ++L P
Sbjct: 224 -VNNFAHIGGFVTGFFLGFILMP 245
>gi|197123290|ref|YP_002135241.1| rhomboid family protein [Anaeromyxobacter sp. K]
gi|196173139|gb|ACG74112.1| Rhomboid family protein [Anaeromyxobacter sp. K]
Length = 360
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 147 AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
A +T D LL GA ++ + G+ WRL T+AFLH HL+ N + +E+
Sbjct: 38 AHGSTTDPSLLARMGALDHARVWDGEPWRLLTAAFLHVGPVHLLWNLAFGVPLCAVVERA 97
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
G RR+L VY +SA+ SA S + GASGA+FG+ G+ +R +G +
Sbjct: 98 IGTRRFLAVYLASALGGSAASLLAAMPMSAGASGALFGVAGAMLAL---YRRAVGSWRAF 154
Query: 265 LQH----LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
L L +++ A+ L ID W H GGL+ GA + W+
Sbjct: 155 LASRDIILNGILLVGFALAGLFLPIDGWAHAGGLVTGAWLGWI 197
>gi|421876784|ref|ZP_16308338.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
gi|372557462|emb|CCF24458.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
Length = 229
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 159 GAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK I Q +WRL T FLHA I H++ N +L +GP E+ G R+L +Y
Sbjct: 47 GAKWGPDIAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFG 106
Query: 218 AIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVII 273
I + SY + +VGAS A+F + ++ +R+R+ I G L ++
Sbjct: 107 GIVGNIFSYLLSPLAISVGASSALFAMFAGLILYGVRYRDNPTIRAQGATFLLF----VV 162
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N+ GLL ID WGH+GGL+GG + +LG
Sbjct: 163 LNLFSGLLAPTIDLWGHIGGLIGGMMSTVMLG 194
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I GQ++RL T+ FLH + HL++N Y+L +G T+E GP R+L +Y + + + +
Sbjct: 134 IADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GAS AIFGL A+F++ R ++ + +++ N+ L +
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRRM-----GRDVSQVLPILVINLVFTLTVP 246
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
GI GH+GGL G ++++L
Sbjct: 247 GISIPGHLGGLAVGGLMAFVL 267
>gi|170017498|ref|YP_001728417.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|414597489|ref|ZP_11447055.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
gi|169804355|gb|ACA82973.1| Small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|390481770|emb|CCF29116.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
Length = 229
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 159 GAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK I Q +WRL T FLHA I H++ N +L +GP E+ G R+L +Y
Sbjct: 47 GAKWGPDIAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFG 106
Query: 218 AIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVII 273
I + SY + +VGAS A+F + ++ +R+R+ I G L ++
Sbjct: 107 GIVGNIFSYLLSPLAISVGASSALFAMFAGLILYGVRYRDNPTIRAQGATFLLF----VV 162
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N+ GLL ID WGH+GGL+GG + +LG
Sbjct: 163 LNLFSGLLAPTIDLWGHIGGLIGGMMSTVMLG 194
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 20/179 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T L+ +NV ++I F L L G + N + Q WR T+AFLH+ H+ N
Sbjct: 70 TYTLIGINVALFILSFV----LPLVGNWLFFNPAVGYRQVWRFLTTAFLHSGFMHIAFNM 125
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------NSPAVGASGAIFGLV 244
+L S+G +E++ G RYL VY SAI +S + + VGASGA+FGL
Sbjct: 126 LALYSVGVELEQVLGRTRYLSVYLLSAIGASLFVLAWVLIQPSSLGTVTVGASGAVFGLF 185
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G A+F+++ ++ + + + + +++ N+ IG ++ + GHVGGL GA +W+
Sbjct: 186 G--AMFVLQKQSGM-----DTRAVVGLLLVNLLIGFIVPNVSWQGHVGGLATGALATWI 237
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLTAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR-------ASPVPVLLIIGFNVVLSFSLPGISVLGH 176
>gi|268319881|ref|YP_003293537.1| hypothetical protein FI9785_1410 [Lactobacillus johnsonii FI9785]
gi|262398256|emb|CAX67270.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 228
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
TN +L V +V+I + +T +L+ GA N L+ G Q+WRL T+ FLH H+
Sbjct: 15 TNAILIVLFVVFIIETMMGGSTNINILVRLGAMNNQLVTVGHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYVSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R I Q LA II N+A+ L ID GH+GGL+ G + + G
Sbjct: 135 VVIALYLANRAIPAINYLGRQALALAII-NLALDLFASHIDILGHLGGLISGFLLGIIFG 193
Query: 306 PA 307
A
Sbjct: 194 SA 195
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S I + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++I + + I+ H+ GL GG +S+L
Sbjct: 156 MTLLIIAVLSTFINSNINIMAHLFGLAGGFLLSFL 190
>gi|113969173|ref|YP_732966.1| rhomboid family protein [Shewanella sp. MR-4]
gi|113883857|gb|ABI37909.1| Rhomboid family protein [Shewanella sp. MR-4]
Length = 520
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYLCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +LA + ++ +GL G+DN H
Sbjct: 451 GVLIIWIWLGLLPLADNMPLALNLALFVSASLVMGLF-GGVDNAAH 495
>gi|24372586|ref|NP_716628.1| rhomboid protease [Shewanella oneidensis MR-1]
gi|24346607|gb|AAN54073.1| rhomboid protease [Shewanella oneidensis MR-1]
Length = 528
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 129 IGRQWTNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFL 180
+G T ILL VL+++ FA+ LL WGA + L+ Q WRL ++ FL
Sbjct: 332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
H + HL+ N Y L G +E + G R LGVY S +A+S S + + ++GASGA
Sbjct: 392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
I GL G ++I L HL + ++ +GLL G+DN H
Sbjct: 452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAH 501
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 17/202 (8%)
Query: 134 TNILLAVNVLVY-----IAQFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIA 185
T+ L+A V+VY IAQ T +L+ GA+ ++ G++WRL T+ FLH +
Sbjct: 15 TSALVAFMVVVYLWEALIAQSFTISSRVLYETGAQFGPIVLHYGEWWRLLTAGFLHVTAS 74
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
HL+ N +L IG +E GP R+L ++ ++ I+ + MS F N + GASG +FGL
Sbjct: 75 HLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGNLMSLAFGAMNVISAGASGGVFGL 134
Query: 244 VGSFA-VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
G+ + +M R + + + + ++ ++ L GID H+GGL+GG +
Sbjct: 135 FGAIVRLGLMDKRR--AYWRSQAKLMTAFVLLSVISALFTPGIDLAAHIGGLIGG----F 188
Query: 303 LLGPALKYEFTSDDGFRIFSDR 324
L+ P F F+I R
Sbjct: 189 LIVPVFISGFHYSGLFKIGGGR 210
>gi|384049179|ref|YP_005497196.1| hypothetical protein BMWSH_5009 [Bacillus megaterium WSH-002]
gi|345446870|gb|AEN91887.1| Conserved membrane protein YdcA [Bacillus megaterium WSH-002]
Length = 200
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 84/147 (57%), Gaps = 10/147 (6%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF---NM 276
+ +++ +S VGASGAIFGL+G + +++ +++L +++ +++F +
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSKSNQQI-----IVVFLIIGL 163
Query: 277 AIGLLIKGIDNWGHVGGLLGGAAISWL 303
GLL G +N H G + G +++L
Sbjct: 164 LSGLLTPGTNNTAHFAGGIAGFLLAFL 190
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ GA
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGA 501
>gi|271961709|ref|YP_003335905.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
gi|270504884|gb|ACZ83162.1| rhomboid-like protein [Streptosporangium roseum DSM 43021]
Length = 291
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 15/175 (8%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA-------HLMV 189
LL VN+L Y A+ + + + + +G++WRL T AFLH ++ H++
Sbjct: 82 LLIVNILAYAAESLSPSVVSAFQMSSGHVAFRGEWWRLITGAFLHMPLSAGGFALTHILF 141
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N ++L +IGP +E+ G R+L +Y SA+ S Y F AVGASGAI+G+ G A+
Sbjct: 142 NMWALYAIGPELERRLGSLRFLVLYLLSALGGSVAIYLF-GIAAVGASGAIYGMFG--AL 198
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F++ + LG + + + +I N+ + + I GH+GGL+ GA + +L
Sbjct: 199 FVVSKK--LG---YDARGVLWLIGINVVLTFTVPSISWQGHLGGLITGAIVGGIL 248
>gi|289434618|ref|YP_003464490.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170862|emb|CBH27404.1| rhomboid family membrane protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 509
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQD--KLLLWGAKINSL 165
T+ N + + T FIG LL L Q T D L+ WG K N L
Sbjct: 168 TKVNEEQKVARNSKPTVTYTFIG------LLIAAFLWVTFQGGTTDSFNLIKWGGKFNPL 221
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR + FLH+ + HL N L +G E+I G RY + I + S
Sbjct: 222 IYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYTLILIIGGICGNIAS 281
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
+ + ++GAS A+F ++G+ ++ N+ K +A ++ N+ + + I
Sbjct: 282 FALNMNLSIGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAVNLLLDVFSSQI 339
Query: 286 DNWGHVGGLLGG 297
D GH+GGL+GG
Sbjct: 340 DIAGHIGGLVGG 351
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 132 QWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T L+ VN+ V+I D L+ +GA + L+ GQ+WR+ T+AF+H H
Sbjct: 12 KVTTALMLVNIAVFIIMTLHGGSEDIDNLVRFGAMVKPLVKLGQWWRIFTAAFIHIGFFH 71
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLV 244
++ N Y L SIGP EK+ G R +L +Y + I + +Y F N+ + GAS +++G+
Sbjct: 72 ILFNMYFLYSIGPLFEKLYGSRNFLIIYLLAGIMGNLFTYAFASNNTVSAGASTSLYGIF 131
Query: 245 GSFAVFIMRHRN 256
G ++ +R+
Sbjct: 132 GLAIGLMINYRD 143
>gi|111020678|ref|YP_703650.1| rhomboid family protein [Rhodococcus jostii RHA1]
gi|110820208|gb|ABG95492.1| possible rhomboid family protein [Rhodococcus jostii RHA1]
Length = 305
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 84 TYILMAANVGIFLITAAQSRSIMQNQAGSKLFADWALFPPAVVD-GQIVRVLGSGFLHFG 142
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
I HL VN ++L IG E + G RY VYF+S + SA F + GASGA+FG
Sbjct: 143 IIHLAVNMFALWVIGRDTELVLGRARYACVYFASLLGGSAAVMLFQLGAVTAGASGAVFG 202
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 203 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGH 243
>gi|281414912|ref|ZP_06246654.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
gi|289706946|ref|ZP_06503281.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
gi|289556271|gb|EFD49627.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
Length = 258
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSAFLH--ANIAH 186
T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A +H + H
Sbjct: 38 TWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYALVHDVSGPTH 97
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIFGLV 244
L++N +L IG +E G R+L +Y SA+ + + + P VGASGA++G+
Sbjct: 98 LLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVVGASGAVYGM- 156
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
FA + R + GG +++ +A +I N+ L+ G+ HVGGLL GA ++
Sbjct: 157 --FAALFLLTR-VRGG---QVRSIAVLIGLNLVFSFLLPGVAWQVHVGGLLTGAVVA--- 207
Query: 305 GPALKYEFTSDDGFRIFSDRAP 326
F+ G R R P
Sbjct: 208 -----VVFSLAGGLRPGRARVP 224
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 8/153 (5%)
Query: 158 WGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
+GA LI + Q++RL T FLH I HLM N L ++G +EK G ++L +YF
Sbjct: 39 YGAMYPPLIFEDAQYYRLITCIFLHFGIDHLMNNMVMLGALGWNLEKEIGSFKFLLIYFV 98
Query: 217 SAIA----SSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
S I S AM + N + + GASGAIFGL+G+ ++R+R G+ + + +
Sbjct: 99 SGIGANLISLAMDFYTGNLAVSAGASGAIFGLLGALLWVVIRNRG--KAGRLTGRGMLFM 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ ++ G G+DN HVGGL+ G + LL
Sbjct: 157 VLLSLYFGFTSTGVDNAAHVGGLICGFLTAVLL 189
>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]
Length = 585
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 135 NILLAVNVLVYIAQFATQDK---------LLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
+IL+++N+ V + + A+ + L++GAKIN LI G++WRL T FLH+ I
Sbjct: 245 SILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFLHSGIF 304
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
H+ + C+ L + GP + + G + +Y I+ + S+ VG +G +F ++G
Sbjct: 305 HVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGTGPVFAIIG 364
Query: 246 SFAVFIMRHRNILGGG-KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
++ + +++++++ E + H A + +I ID+W H G +A
Sbjct: 365 AWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFTASA 419
>gi|256843575|ref|ZP_05549063.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256850051|ref|ZP_05555481.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047339|ref|ZP_06020296.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|293381863|ref|ZP_06627832.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|423319243|ref|ZP_17297119.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|423320787|ref|ZP_17298659.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
gi|256614995|gb|EEU20196.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713023|gb|EEU28014.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572313|gb|EEX28876.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|290921584|gb|EFD98617.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|405589376|gb|EKB62943.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|405599039|gb|EKB72221.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
Length = 228
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 8/175 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSL 194
+L+ V V++ + L+ GA N + G Q+WRL T+ FLH I HL+ N +
Sbjct: 22 LLIIFLVEVFLGGSENTNVLMKMGAMNNFAVVAGHQWWRLFTAQFLHIGIMHLVSNAIII 81
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIM 252
+G ME + G R+L Y + + + MS F + GAS A+FGL G+ +
Sbjct: 82 YYMGQYMEPLMGHVRFLVTYLLAGVGGNLMSLAFSADRGLSAGASTALFGLFGAMTAIGL 141
Query: 253 R--HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
R H ++ + LA + N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 142 RNLHNPMIAFLGRQAFVLALI---NLALDIFVPGIDIWGHIGGLIAGFLLAIILG 193
>gi|333369428|ref|ZP_08461543.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332971152|gb|EGK10116.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 248
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 24/204 (11%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL V +++ Q AT + LL WGA + WRL +S FLH +
Sbjct: 13 TALLLLSFVALFVIQVATGVDINQPSLEDLLKWGANALPYTIGYEPWRLVSSGFLHIGLM 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM-SYR-----FCN--SPAV--G 235
HL+ NC+++ G E G ++L ++ S + + + SY F N +P + G
Sbjct: 73 HLLFNCFAMYYFGQVAEVTFGSVKFLLLFLLSTVGGNLLNSYVTLWQIFHNEGAPGISAG 132
Query: 236 ASGAIFGLVGSFAVFIMRHRNILG----GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
ASG I G+ + + + + +L GG +L+ LA ++ N+ G + GIDN GH+
Sbjct: 133 ASGGIMGIGMALLMVELLKKTLLNFPAKGGNPQLKSLAIIMGINLMYGFAVPGIDNAGHI 192
Query: 292 GGLLGGAAISWLLGPALKYEFTSD 315
GG L GA ++ +G L Y +++
Sbjct: 193 GGALTGAILA--VGIMLGYRYSAT 214
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIG---RQWTNILLAVNVLVYIAQFATQD---KLLLWGA- 160
T +GH T+ + I R T IL+ +N+ V+IA + L+L GA
Sbjct: 57 TGSGTGHAPTAAMPRTLAGGSIAADPRLLTKILIGINLAVFIAVKVHESLLTDLVLLGAW 116
Query: 161 -----KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+ G+++R+ TS F H I H+ N SL +G +E G RYL +Y
Sbjct: 117 PPAPYAPTQGVAGGEWYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYL 176
Query: 216 SSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
S +A SA++Y N+ +GASGAIFGL G+ AV + R + + + LA +I
Sbjct: 177 VSGLAGSALAYLLASPNTATLGASGAIFGLFGATAVLMRRLNYDM---RPIIALLAINLI 233
Query: 274 FNMAIGLLIKGIDNW-GHVGGLLGGAAISWLL 304
F + G I +W H+GGL+ G I + +
Sbjct: 234 FTFSPGFNI----SWQAHIGGLVAGVVIGYAM 261
>gi|449466454|ref|XP_004150941.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis
sativus]
Length = 374
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + SL + Q WRL T +HA + HL++N S+ +G +E GP R +Y SA
Sbjct: 97 GLQRKSLTEYRQIWRLFTFPCMHAGLIHLVINLGSVIFVGIQLELEYGPVRTGIIYLLSA 156
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ ++ F NSP+VG+SGA+FGL+G+ I+R+ + L + V N
Sbjct: 157 YTGTLVAALFAQNSPSVGSSGALFGLLGAMISGIIRNWKLYTDRFLALGSVLAVFAINFG 216
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL 304
+GLL IDN+ +VGGL+ G + +++
Sbjct: 217 LGLL-PYIDNFANVGGLVAGVLLGFII 242
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY S I + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LIVYIVSGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++I + + I+ H+ GL GG +S+L
Sbjct: 156 MTLLIIAVLSTFINSNINIMAHLFGLAGGFLLSFL 190
>gi|328866134|gb|EGG14520.1| beta-lactamase family protein [Dictyostelium fasciculatum]
Length = 490
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 1/159 (0%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+ LL GAK LI G++WR + FLH I HL++N + IG +E+ G R
Sbjct: 271 SASTLLNVGAKYAPLILYGEWWRFFSPIFLHVGIFHLLMNLGTQLRIGMQLERSYGAHRI 330
Query: 211 LGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+ +Y + + S F S VGASG+IFG +G + R+ + L L
Sbjct: 331 VPIYLLCGVMGNLCSSIFLPLSVQVGASGSIFGFLGVLLADLARNWSALASPYLNCCSLV 390
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
II + A+GL + G+DN+ H GG + G + P+L
Sbjct: 391 FTIITSFAVGLFLPGVDNFAHFGGFVMGILTGLIFLPSL 429
>gi|239916634|ref|YP_002956192.1| hypothetical protein Mlut_00720 [Micrococcus luteus NCTC 2665]
gi|239837841|gb|ACS29638.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
Length = 313
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 124 RTNLFIGRQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSLIDKGQFWRLATSA 178
R F T ILLAV +VY AQ+ T+D+ LW A + + + WR+A+ A
Sbjct: 83 RRTGFAASPVTWILLAVTAVVYAAQWMTRDQASGVTEALWYAGLYTSPYGMEPWRMASYA 142
Query: 179 FLH--ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAV 234
+H + HL++N +L IG +E G R+L +Y SA+ + + + P V
Sbjct: 143 LVHDVSGPTHLLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWVSDPLQPVV 202
Query: 235 GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
GASGA++G+ FA + R + GG +++ +A +I N+ L+ G+ HVGGL
Sbjct: 203 GASGAVYGM---FAALFLLTR-VRGG---QVRSIAVLIGLNLVFSFLLPGVAWQVHVGGL 255
Query: 295 LGGAAIS 301
L GA ++
Sbjct: 256 LTGAVVA 262
>gi|449522305|ref|XP_004168167.1| PREDICTED: inactive rhomboid protein 1-like, partial [Cucumis
sativus]
Length = 380
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + SL + Q WRL T +HA + HL++N S+ +G +E GP R +Y SA
Sbjct: 124 GLQRKSLTEYRQIWRLFTFPCMHAGLIHLVINLGSVIFVGIQLELEYGPVRTGIIYLLSA 183
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ ++ F NSP+VG+SGA+FGL+G+ I+R+ + L + V N
Sbjct: 184 YTGTLVAALFAQNSPSVGSSGALFGLLGAMISGIIRNWKLYTDRFLALGSVLAVFAINFG 243
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL 304
+GLL IDN+ +VGGL+ G + +++
Sbjct: 244 LGLL-PYIDNFANVGGLVAGVLLGFII 269
>gi|336053788|ref|YP_004562075.1| hypothetical protein WANG_0278 [Lactobacillus kefiranofaciens ZW3]
gi|333957165|gb|AEG39973.1| possible membrane protein [Lactobacillus kefiranofaciens ZW3]
Length = 226
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 136 ILLAVNVL-VYIAQFATQDKLLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYS 193
ILLAV ++ V++ + L+ GA N + GQ +WRL T+ FLH + HL+ N
Sbjct: 19 ILLAVFLVEVFLGGSENTNVLMKMGAMSNFAVVVGQQWWRLFTAQFLHIGVMHLVSNAVI 78
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFI 251
+ +G ME + G R+L Y + I + +S F + + GAS A+FGL G+
Sbjct: 79 IYYMGLYMEPLMGHWRFLATYLLAGIGGNLLSLAFGSDRGLSAGASTALFGLFGAMTAIG 138
Query: 252 MRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+R+ + +L + + + N+A+ L + GID WGH+GGL+ G ++ ++G
Sbjct: 139 LRNMR-----NPMISYLGRQAFVLALINLALDLFVPGIDIWGHLGGLISGFLLAIIMGDH 193
Query: 308 LKYEFTSDDGFRIFSDRAPIFHLI 331
+ T + +R+ + I +++
Sbjct: 194 IMK--TYNPKWRVLAGAVLIVYVV 215
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LL +GA+ +D G ++RL T+ F+H I H++ N Y+L G +E I G ++L Y
Sbjct: 39 LLRYGAQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSY 98
Query: 215 FSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
F + + + ++ F ++ +VGASGAIFGL+G R L +I+
Sbjct: 99 FFTGVVGNIATHIFYHDTISVGASGAIFGLIGVLFAAGFRKDTPFFMKPVTGVSLLPIIL 158
Query: 274 FNMAIGLLI-KGIDNWGHVGGLLGGAAISWLLGP 306
N+ G L I+N H+GG L G + + + P
Sbjct: 159 INVVYGFLPGTNINNAAHLGGFLSGMLLGYTMKP 192
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 113 GHEGTSHLDTARTNLFIG--------RQWTNILLAVNVLVYIAQFATQDKL-----LLWG 159
G GT H TA I R T IL+ +N+ V++ Q + D+ LL
Sbjct: 57 GGSGTGHAPTATQPRTIAGGTVAADPRLITKILIGLNLAVFLVQLSVGDRFTERFELLGR 116
Query: 160 AKINSL-----IDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A + L + +GQ +RL T+ FLH + H++ N SL IG +E G RYL
Sbjct: 117 AYVPLLGSLQGVAEGQSYRLLTAMFLHDPHSYVHILFNMLSLWWIGGPLEAALGRIRYLT 176
Query: 213 VYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMR 253
+YF S +A S ++Y N P++GASGAIFGL G+ AV + R
Sbjct: 177 LYFVSGLAGSGLTYLIAAPNQPSLGASGAIFGLFGATAVLMRR 219
>gi|253573307|ref|ZP_04850650.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846835|gb|EES74840.1| rhomboid family protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 204
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 12/186 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T +LLA N++++I LL +GA + GQ WRL T+ FLH HL
Sbjct: 19 TCLLLAANIVMFIMLTLNGGSRNGLTLLRFGAMSDIEPFAGQSWRLFTAMFLHNGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS---YRFCNSP--AVGASGAIFGL 243
N +++ P +E++ G RY VY S + + +S Y+F + P +VGASGA++G+
Sbjct: 79 SNSFAILVFAPPLERLLGWWRYALVYLGSGLVGNLISMGVYQFSSVPHISVGASGAVYGV 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
G+F + R+++ + + L ++I + +L+ I+ H GGL+GG I L
Sbjct: 139 YGAFLYIALLQRHLM--DESSRKTLYSLLIIGVIYSVLVPKINLAAHFGGLVGGFFIYGL 196
Query: 304 LGPALK 309
+ LK
Sbjct: 197 IVRLLK 202
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 19/181 (10%)
Query: 137 LLAVNVLVYIAQFA---TQDKLLLW---GAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
L+A N++VYI + T + L G +ID +++RL TS FLHA + HL N
Sbjct: 153 LIAANIIVYIIVASGGNTYNGFYLATKGGLVAKYVIDYKEYYRLFTSMFLHAGVQHLASN 212
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA---MSYRFCNSPA--VGASGAIFGLVG 245
L +G T+E+I G RY +Y + + +S + YR + A +GASGAIF ++G
Sbjct: 213 MIMLLFVGDTIERIVGHVRYAIIYLAGGLFASVGTLLYYRTYDMYACCIGASGAIFAVMG 272
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIF-NMAI--GLLIKGIDNWGHVGGLLGGAAISW 302
+ ++ +R G+ E + ++I+F AI GL +G N H+ GLLGG I+
Sbjct: 273 ALIYILICNR-----GRTEGFSIVRIILFVAYAIYSGLTTQGTCNAAHIAGLLGGLLITA 327
Query: 303 L 303
+
Sbjct: 328 I 328
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WRL + LH+ H++ N +SL GP +E++ G R++ +Y ++
Sbjct: 47 AGVNLYIVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGA 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
A++ + VGASGAIFGL G FA I+ + +L +E Q + + I +
Sbjct: 107 AANIATLLLEPLTYIHVGASGAIFGLFGYFAAIIVFRKELL--SRENSQIILTITIIGVI 164
Query: 278 IGLLIKGIDNWGHVGGLLGGAAI 300
+ L I+ H+ GLL G I
Sbjct: 165 MTFLQPNINVTAHLFGLLAGFLI 187
>gi|356575933|ref|XP_003556090.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]
Length = 329
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
++++++ Q WRL T +LHA + HL+ N SL IG +E+ G + +Y S S
Sbjct: 108 DNVVNRHQGWRLFTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGS 167
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I+ N+ IG+L
Sbjct: 168 VLSSLFIRDHISVGASGALFGLLGAMLSELITNWTIYSNKAMALITLLVIIVINLGIGIL 227
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSD 315
+DN+ H+GG L G + ++L P ++ +
Sbjct: 228 -PHVDNFAHIGGFLVGFLLGFILLPRPQFSWLEQ 260
>gi|242056443|ref|XP_002457367.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
gi|241929342|gb|EES02487.1| hypothetical protein SORBIDRAFT_03g006170 [Sorghum bicolor]
Length = 338
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
T LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 139 TSATLLEMGALETSKVTKDHEGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFIR 198
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 199 IGTLYVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTL 258
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+I+ N+A+G+L +DN+ H+GG + G + ++L
Sbjct: 259 VMIIVINLAVGIL-PHVDNFAHLGGFMSGFCLGFVL 293
>gi|356559853|ref|XP_003548211.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]
Length = 329
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++ Q WRL T +LHA + HL N SL IG +E+ G R +Y S S
Sbjct: 109 DDVVNHHQAWRLVTCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGS 168
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 169 VLSSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLLFIIVINLAIGML 228
Query: 282 IKGIDNWGHVGGLL 295
+DN+ H+GG L
Sbjct: 229 -PHVDNFAHIGGFL 241
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q +++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSENSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY+ +Y + + + +S N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSLRYVLLYLVTGVVGNILSIAHYNMVAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+F + R+++ + L ++ F + + I+ H GGLL G
Sbjct: 139 YGAFLYVALFQRSLMDDASR--KTLYTLLGFGILFSFAVANINWTAHFGGLLSG 190
>gi|399524860|ref|ZP_10765362.1| peptidase, S54 family [Atopobium sp. ICM58]
gi|398373815|gb|EJN51650.1| peptidase, S54 family [Atopobium sp. ICM58]
Length = 292
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-N 230
W + T AFLH I H++ N SL +G +E G R+L +Y SA+ SA +C
Sbjct: 113 WTVLTGAFLHGGITHILFNMLSLYWVGRAIEPAMGRWRFLALYLVSALGGSAFIIAWCLI 172
Query: 231 SPA------VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
P+ VGASGA+FGL G AVF+++ LGG + + ++ N+ G ++ G
Sbjct: 173 QPSEIFVSTVGASGAVFGLFG--AVFVLQR---LGGSDTTV--ILTLLGINLVYGFMVSG 225
Query: 285 IDNWGHVGGLLGGAAISWLL 304
I GH+GG + G A +W+L
Sbjct: 226 ISWQGHIGGAIAGVAATWVL 245
>gi|170076963|ref|YP_001733601.1| rhomboid family membrane protein [Synechococcus sp. PCC 7002]
gi|169884632|gb|ACA98345.1| conserved, probable membrane protein, rhomboid family
[Synechococcus sp. PCC 7002]
Length = 550
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 135 NILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
++L+AVN LV++ A + +L G I + + +G++WRL T+ F+H +AHL++
Sbjct: 346 SVLVAVNCLVFLGAIAVSSPENPEAMLQGGGFIPNQVLQGEWWRLFTANFIHVGLAHLLM 405
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS---------AMSYRFCNSPA------- 233
N +L +GP EK G RYL VY S ++ A + + PA
Sbjct: 406 NMATLALLGPFAEKHLGRSRYLLVYLGSGFGATVTLFGLVLLAQGFDYEAFPAWLAYLTT 465
Query: 234 ---------VGASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAKVIIFNMAIGLLI 282
VGASG+I G++G+ AV + + R L + + + +I+ A+ L
Sbjct: 466 EIRYGYQVWVGASGSIMGMIGAIAVVLWQGWQRFHLEAAGRQFRLICLIIVIQFAVDLSS 525
Query: 283 KGIDNWGHVGGLLGGAAISWLL 304
+ + H+ GL G A++ LL
Sbjct: 526 PNVSFYSHLLGLSWGIALTLLL 547
>gi|330818784|ref|XP_003291518.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
gi|325078290|gb|EGC31949.1| hypothetical protein DICPUDRAFT_49886 [Dictyostelium purpureum]
Length = 202
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-Y 226
+G++WR + FLH I H ++N + +G +E+ G R + +Y + + S
Sbjct: 3 QGEWWRFFSPIFLHVGIFHYLMNMATQLRVGMQLERAYGGHRIVPIYLLCGVMGNLCSAI 62
Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
S VGASGAIFG +G ++R+ +L LA II + A+GL + G+D
Sbjct: 63 MLPQSVQVGASGAIFGFLGVLLADLIRNWGVLARPYLNCGTLAFTIITSFAVGLFLPGVD 122
Query: 287 NWGHVGGLLGGAAISWLLGPALK 309
N+ H GG + G W+ P+L
Sbjct: 123 NYAHFGGFIMGILTGWIFLPSLT 145
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 24/177 (13%)
Query: 136 ILLAVNVLVY-IAQFATQDKL-----------LLWGAKINSLIDKGQFWRLATSAFLHAN 183
+L+AVNV+VY + F D + +LW + LID ++WRL TS FLH
Sbjct: 112 LLIAVNVVVYALTAFQAGDVMNNYLSPVFADGVLWPEAV-VLID--EWWRLLTSGFLHYG 168
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
+ HL +N +L +G +E + G R+L VYF S A + + + GASGAI+
Sbjct: 169 LLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLSMFAGAVAVFVLGEPGTATAGASGAIY 228
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
GL+G+ V ++R R +I+ N+ + + I I GH+GGL+ GA
Sbjct: 229 GLMGAVLVAVLRLR-------LNPTTAIAIIVLNVFLSMSIPNISLLGHLGGLVAGA 278
>gi|242061182|ref|XP_002451880.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
gi|241931711|gb|EES04856.1| hypothetical protein SORBIDRAFT_04g009170 [Sorghum bicolor]
Length = 328
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 108 TRKNSGHEG-TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKL---------LL 157
R N+G + S LD + G TN+L A+N+ V + + A+ K LL
Sbjct: 137 VRGNTGIKSYQSLLDMHTDDQASGFYLTNLLAAINIAVLLFEIASPVKSSENEYLSLPLL 196
Query: 158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
+GAKIN+LI G++WRL T LH+ H+ + C++L GP + + G + +Y
Sbjct: 197 YGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLLFGPRVCRAYGQMTFFLIYILG 256
Query: 218 AIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I + S+ V +G +F L+G++ V+ +++ ++ E VI ++
Sbjct: 257 GICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQSQNKQVIDKDVSESMFWQAVIAAALS 316
Query: 278 IGLLIKG-IDNW 288
L I G IDNW
Sbjct: 317 FLLSIFGRIDNW 328
>gi|183598259|ref|ZP_02959752.1| hypothetical protein PROSTU_01644 [Providencia stuartii ATCC 25827]
gi|386744560|ref|YP_006217739.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
gi|1168254|sp|P46116.1|AARA_PROST RecName: Full=Rhomboid protease AarA; AltName: Full=Intramembrane
serine protease
gi|453686|gb|AAA61597.1| 2'-N-acetyltransferase [Providencia stuartii]
gi|188020429|gb|EDU58469.1| rhomboid protease AarA [Providencia stuartii ATCC 25827]
gi|384481253|gb|AFH95048.1| hypothetical protein S70_16165 [Providencia stuartii MRSN 2154]
Length = 281
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 32/209 (15%)
Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
I T +LL + V Y FA+ + L+L+GA I L G +WR S LH+N
Sbjct: 21 IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP------ 232
HL NC +L IG E+ G + L +Y S I ++ S Y NS
Sbjct: 81 GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDST 140
Query: 233 -----AVGASGAIFGLVGSFAVFIMR--------HRNILGGGKEELQHLAKVIIFNMAIG 279
VGASGAI G+ + +++++ H I K +L +L +I + G
Sbjct: 141 VYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLING 200
Query: 280 LLIKGIDNWGHVGGLLGGAAIS--WLLGP 306
L G+DN H+GG + GA IS ++L P
Sbjct: 201 LQ-SGVDNAAHIGGAIIGALISIAYILVP 228
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I +G+++RL T+ FLH + HL++N Y+L +G +E GP R+L +Y S + + +
Sbjct: 134 IAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAA 193
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GAS AIFGL A+F++ R LG ++ + +++ N+ L +
Sbjct: 194 YLISAPNAATAGASTAIFGLFA--ALFVVGRR--LG---RDVSQVLPILVINLVFTLTVP 246
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
GI GH+GGL+ GA ++ +L
Sbjct: 247 GISIPGHLGGLVLGALMAVIL 267
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S + + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LIVYIASGLIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++I + + I+ H+ GL GG +S+L
Sbjct: 156 MTLLIIAVLSTFINSNINIMAHLFGLAGGFLLSFL 190
>gi|403251941|ref|ZP_10918256.1| putative membrane protein [actinobacterium SCGC AAA027-L06]
gi|402914686|gb|EJX35694.1| putative membrane protein [actinobacterium SCGC AAA027-L06]
Length = 178
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
L+G +IN+ GQ++RL T A +H HL+ N +L S+G T+E G +Y+ + +
Sbjct: 32 LYGLEINN----GQWYRLLTVALVHGGWLHLLFNMLALYSLGFTIENYFGKNKYIFILLT 87
Query: 217 SAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
S + S SY F S AVG+SG IFGL G V R L+ +I
Sbjct: 88 SLVFGSLTSYLFNPLTSFAVGSSGMIFGLFGCLLVIGKRM-------GANLREGLGLIGL 140
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
N+ I +I GID H+GGL+GG + L+ P
Sbjct: 141 NLVIPFVIPGIDWKAHLGGLVGGVLATLLVKP 172
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 134 TNILLAVNVLVYIAQF--ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
+ L+A+N+LVY+ + + + +G N I +GQ+WR T FLH + HL+ N
Sbjct: 18 VSTLIALNLLVYVLMWLPSLGQWIYFYGVGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNM 77
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAV 249
+SL GP +E++ G R+ +Y + +SA +Y + VGASGAIFG+ G+F
Sbjct: 78 FSLFLFGPELERLTGKVRFTTIYLLAGFFASAATYFLQPLDYFHVGASGAIFGVFGAFGA 137
Query: 250 FI 251
+
Sbjct: 138 LV 139
>gi|326504866|dbj|BAK06724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 418
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
T LL GA + K ++WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 136 TSATLLQMGALETGKVAKDHEWWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLR 195
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 196 IGTLYVISGVGGSLLSALFMVSNISVGASGALFGLLGSMLSELITNWTIYENKCAALLTL 255
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+I+ N+A+G+L +DN+ H+GG + G + ++L
Sbjct: 256 VMIIVINLAVGIL-PHVDNFAHIGGFVSGFFLGFVL 290
>gi|383458045|ref|YP_005372034.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
gi|380732947|gb|AFE08949.1| S54 family peptidase [Corallococcus coralloides DSM 2259]
Length = 542
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ WGAK L+ D GQ WRL T+ LH + HL +N +G +E+ C Y+
Sbjct: 61 EALIHWGAKSGPLVTDAGQGWRLLTANLLHRDALHLGLNLLVFAGVGTAVERSCRWWDYV 120
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL------ 265
+ S +A+ A S + + +VGASG +FG VG+ V R R G K
Sbjct: 121 ALLAVSGLATMAGSLWWSPTVSVGASGWVFGCVGALLVLGRRART---GAKSARMGWFSG 177
Query: 266 -QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFS 322
L V++F + +G G+DN GH+GGL+ G L+G L+ GFR +
Sbjct: 178 ENALPTVLVF-LWLGWTSVGVDNAGHMGGLMAGL----LVGVLLRSRAWGPGGFRAVA 230
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 2 ATTRLSAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWR 61
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RYL VY + + SA F N A
Sbjct: 62 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYLAVYLIALLGGSAAVMLFENDRA 121
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 122 LTAGASGAIYGLMGAMLVVILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 173
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 13/171 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q + ++ K + G+++R+ TS FLH+ + +H+++
Sbjct: 76 TYTLIGINVVVYLLQLIIPQYWVYSMFALKWDYTEFTGEYYRVLTSGFLHSQNDYSHIVM 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASGAIFGLVGS 246
N SL G +E++ G RYL VY S + S + P VGASG IFGL+G+
Sbjct: 136 NMLSLYIFGIALEQMMGWWRYLLVYLLSIVGGS-FGVLLLDDPTAEVVGASGGIFGLIGA 194
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
+ V ++ R ++ ++ L +I N+A G L+ GI H GG + G
Sbjct: 195 YLVIMVILRE-----RDNIRALMIMIAVNVAFGFLVPGISWQAHAGGFVVG 240
>gi|449483645|ref|XP_004156648.1| PREDICTED: uncharacterized protein LOC101224387 [Cucumis sativus]
Length = 471
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 201 EVNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFG 260
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 261 GSLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVG 320
Query: 280 LLIKGIDNWGHVGGLLGG 297
+L +DN+ H+GG + G
Sbjct: 321 IL-PHVDNFAHIGGFISG 337
>gi|414876345|tpg|DAA53476.1| TPA: hypothetical protein ZEAMMB73_598699 [Zea mays]
Length = 663
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 155 LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R +
Sbjct: 136 LLEMGALETSKVTKDHEGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIRIGTL 195
Query: 214 YFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L +I
Sbjct: 196 YVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTLVMII 255
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ N+A+G+L +DN+ H+GG + G + ++L
Sbjct: 256 LINLAVGIL-PHVDNFAHLGGFMSGFCLGFVL 286
>gi|336319156|ref|YP_004599124.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
gi|336102737|gb|AEI10556.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
Length = 299
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA--NIAHLMVNC 191
T +A+ V+ Y+ Q+ W K + L + WR TSAFLH+ +I H+++N
Sbjct: 71 TLAFIALCVVAYLGQWTVDGFTTDW--KYSPLRGHAEPWRFLTSAFLHSPGSIFHIVLNM 128
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASS-------AMSYRFCNSPAVGASGAIFGLV 244
+L ++GP +E G RY +Y SAI S A+ + S VGASGA+FGL
Sbjct: 129 VALWTVGPYLEVQLGRVRYATLYLLSAIGGSVVVLLVAALGWSDWYSGVVGASGAVFGLF 188
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G A F++ R+ Q + VI NM ++ GI GH+GGL+ G
Sbjct: 189 G--AAFVVMWRS-----GHPAQGMLGVIGVNMVFSFVVPGISWQGHLGGLVTG 234
>gi|218557587|ref|YP_002390500.1| hypothetical protein ECS88_0691 [Escherichia coli S88]
gi|432361433|ref|ZP_19604618.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
gi|218364356|emb|CAR02031.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|430889951|gb|ELC12598.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE5]
Length = 625
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL + WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSDESWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L +G E+I G R L ++ S I +S Y S ++GASGAI G+ G+
Sbjct: 83 ALLVVGTVAERILGKWRLLIIWLFSGIFGGLISACYTLRESEQIVISIGASGAIMGIAGA 142
Query: 247 FAVFIM------RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ H+N + + L ++ + G GIDN H+GGL+ G +
Sbjct: 143 AIATQLASGAGTHHKN-----QRRVFPLLGMVALTLLYGTRQTGIDNACHIGGLIAGGTL 197
Query: 301 SWL 303
WL
Sbjct: 198 GWL 200
>gi|184199658|ref|YP_001853865.1| rhomboid family protein [Kocuria rhizophila DC2201]
gi|183579888|dbj|BAG28359.1| rhomboid family protein [Kocuria rhizophila DC2201]
Length = 241
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 166 IDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
+ + Q WR+ TS F+HA + HL++N Y+L G +E + GP R ++ S + S
Sbjct: 98 LTQTQPWRMLTSGFVHAMPSPVHLLLNMYTLYLFGRMLEPLLGPWRMTALFLGSVLGGS- 156
Query: 224 MSYRFCNSPAV---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+ P V GASG IFGL G+ VFI R + +A +I N+ G
Sbjct: 157 VGVALWGDPGVLVIGASGGIFGLFGAMFVFIRHFRG-------SVTPIAVLIGINLVFGF 209
Query: 281 LIKGIDNWGHVGGLLGGAAISWLLGPALK 309
L+ G+ HVGGL+ GA + L+ P L+
Sbjct: 210 LVAGVAWQAHVGGLVAGALLGVLMLPGLR 238
>gi|172038646|ref|YP_001805147.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|354554015|ref|ZP_08973320.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
gi|171700100|gb|ACB53081.1| hypothetical protein cce_3733 [Cyanothece sp. ATCC 51142]
gi|353553694|gb|EHC23085.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
Length = 525
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 132 QWTNILLAVNVLVYIAQ--------FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
Q T L+ +N LV++A+ F T ++L GA + + KG+FWRL T+ FLH
Sbjct: 330 QITLCLIILNSLVFLAEIGFGGTENFKTLEQL---GALVPMFVWKGEFWRLITANFLHYG 386
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSY--RFCNSP---AVGAS 237
H + N L IG +E + +Y+ VYF S + S A SY + N VGAS
Sbjct: 387 WGHFLTNMLGLYIIGNLVESLSNKSKYIIVYFFSGVGSMFAFSYIALYANKVDYILVGAS 446
Query: 238 GAIFGLVGSFAVFIMRH--RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLL 295
+I GL+GS +R +N ++ L + VI F + LLI + H+ GLL
Sbjct: 447 ASIMGLLGSLTAIFLRKWLQNKSSINRKRLLIMVTVITFQLMSDLLIPQVSMLSHLFGLL 506
Query: 296 GGAAIS 301
G +
Sbjct: 507 IGFTLE 512
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
A + L+ GA S + G+ WRL T+ FLH HL +N +L GP +E+ GP R
Sbjct: 46 ADPELLVRLGALERSRVWAGEPWRLVTAGFLHGGWHHLAMNLGALLLAGPIVERGLGPAR 105
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
+LG+Y +S + +SA S ++ GASG +FG+VG+ V +RH
Sbjct: 106 FLGLYLASVVGASAASLLAHDAVVAGASGGVFGVVGALLVLELRH 150
>gi|347534329|ref|YP_004840999.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504385|gb|AEN99067.1| hypothetical protein LSA_06440 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 223
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%)
Query: 150 ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ + L+ +GA+ N LI GQ WRL T F+H HL++N L +G +EK G R
Sbjct: 33 SNNNVLIEFGAEYNPLIKAGQIWRLITPIFIHIGYQHLILNMIVLYFLGSIIEKFYGHFR 92
Query: 210 YLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRN 256
YL ++ S I + S+ F N + G+S +IFGL G++ V + +N
Sbjct: 93 YLIIFLVSGIVGNLFSFAFENGISAGSSTSIFGLFGAYFVLYLNLKN 139
>gi|422421998|ref|ZP_16498951.1| rhomboid family protein, partial [Listeria seeligeri FSL S4-171]
gi|313638066|gb|EFS03339.1| rhomboid family protein [Listeria seeligeri FSL S4-171]
Length = 424
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQD--KLLLWGAKINSL 165
T+ N + + T FIG LL L Q T D L+ WG K N L
Sbjct: 83 TKVNEEQKVARNSKPTVTYTFIG------LLIAAFLWVTFQGGTTDSFNLIKWGGKFNPL 136
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR + FLH+ + HL N L +G E+I G RY + I + S
Sbjct: 137 IYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALILIIGGICGNIAS 196
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
+ + ++GAS A+F ++G+ ++ N+ K +A ++ N+ + + I
Sbjct: 197 FALNMNLSIGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAVNLLLDVFSSQI 254
Query: 286 DNWGHVGGLLGG 297
D GH+GGL+GG
Sbjct: 255 DIAGHIGGLVGG 266
>gi|217072548|gb|ACJ84634.1| unknown [Medicago truncatula]
gi|388512075|gb|AFK44099.1| unknown [Medicago truncatula]
Length = 326
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
K +++++ Q WRL + +LHA I HL N SL IG +E+ G R VY S
Sbjct: 104 KWDAVVNHHQGWRLVSCIWLHAGIIHLAANMISLVFIGIRLEQQFGFVRIGIVYLVSGFG 163
Query: 221 SSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G+ ++ + +I L L +I+ N+ IG
Sbjct: 164 GSILSALFIRKSISVGASGALFGLLGAMLSELITNWSIYTNKVAALMTLLFIIVINLVIG 223
Query: 280 LLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
+L +DN+ H+GG L G + ++ P ++
Sbjct: 224 ML-PHVDNFAHIGGFLTGFLLGFIFLPRPQF 253
>gi|422418937|ref|ZP_16495892.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
gi|313633378|gb|EFS00218.1| rhomboid family protein [Listeria seeligeri FSL N1-067]
Length = 414
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQD--KLLLWGAKINSL 165
T+ N + + T FIG LL L Q T D L+ WG K N L
Sbjct: 73 TKVNEEQKVARNSKPTVTYTFIG------LLIAAFLWVTFQGGTTDSFNLIKWGGKFNPL 126
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR + FLH+ + HL N L +G E+I G RY + I + S
Sbjct: 127 IYAGEWWRFISPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYALILIIGGICGNIAS 186
Query: 226 YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGI 285
+ + ++GAS A+F ++G+ ++ N+ K +A ++ N+ + + I
Sbjct: 187 FALNMNLSIGASTAVFAVMGALLYLVVLKPNVY--AKTIGVSIASLVAVNLLLDVFSSQI 244
Query: 286 DNWGHVGGLLGG 297
D GH+GGL+GG
Sbjct: 245 DIAGHIGGLVGG 256
>gi|220918079|ref|YP_002493383.1| rhomboid family protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955933|gb|ACL66317.1| Rhomboid family protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 360
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Query: 147 AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
A +T D LL GA ++ + G+ WRL T+AFLH HL+ N + +E+
Sbjct: 38 AHGSTTDPALLARMGALDHARVWDGEPWRLLTAAFLHVGPVHLVWNLAFGVPLCALVERA 97
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
G RR+L VY +SA+ SA S + GASGA+FG+ G+ +R +G +
Sbjct: 98 IGTRRFLAVYVASALGGSAASMLAAMPMSAGASGALFGVAGAMLAL---YRRAVGSWRAF 154
Query: 265 LQH----LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
L L +++ A+ L ID W H GGL GA + W+
Sbjct: 155 LASRDIILNGILLVGFALAGLFLPIDGWAHAGGLATGAWLGWI 197
>gi|449446051|ref|XP_004140785.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449485528|ref|XP_004157199.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 323
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+++K Q WRL T +LHA + HL+ N L IG +E+ G R +Y S S +
Sbjct: 106 VVNKHQAWRLITCIWLHAGVFHLLANMLCLVFIGTRLEQQFGFVRIGVIYLVSGFGGSVL 165
Query: 225 SYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S N+ +VGASG++FGL+G+ + + I L L +I N IGLL
Sbjct: 166 SSLLIQNNISVGASGSLFGLLGAMLSELFTNWTIYTNKAAALATLLVIIFINFGIGLL-P 224
Query: 284 GIDNWGHVGGLLGGAAISWLLGPALKY 310
++N+ H+GG L G + + L P KY
Sbjct: 225 HVNNFAHIGGFLTGFLLGFALLPRPKY 251
>gi|294845|gb|AAA02747.1| membrane protein [Saccharum hybrid cultivar H65-7052]
Length = 325
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 106 NKIVHQDQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 225
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L +DN+ H+GG G + ++L
Sbjct: 226 L-PHVDNFAHIGGFATGFLLGFVL 248
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 134 TNILLAVNVLVYIA---QFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I Q ++ L L +GA IN Q WR ++ FLHA HL+
Sbjct: 19 TCLILLINIVMFIVLTVQGGSESSLTLIRYGALINEAPFTDQLWRYVSAMFLHAGFDHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-----SPAVGASGAIFGL 243
N +++ P +E++ G RY+ +Y + I + +S N + +VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYVLLYLVTGIVGNILSIAHYNMMTETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+F + R+++ + L ++ F + + I+ H GGLL G
Sbjct: 139 YGAFLYVALFQRSLMDDASR--KTLYTLLGFGILFSFAVANINWTAHFGGLLSG 190
>gi|294497058|ref|YP_003560758.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
gi|294346995|gb|ADE67324.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium QM
B1551]
Length = 200
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 84/147 (57%), Gaps = 10/147 (6%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y + +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGLLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF---NM 276
+ +++ +S VGASGAIFGL+G + +++ +++L +++ +++F +
Sbjct: 109 NIVTFLIQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI-----IVVFLIIGL 163
Query: 277 AIGLLIKGIDNWGHVGGLLGGAAISWL 303
GLL G +N H G + G +++L
Sbjct: 164 LSGLLTPGTNNTAHFVGGIAGFLLAFL 190
>gi|300812773|ref|ZP_07093172.1| peptidase, S54 family [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124161|ref|YP_004034420.1| membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|422844075|ref|ZP_16890785.1| S54 family peptidase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|300496246|gb|EFK31369.1| peptidase, S54 family [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280724|gb|ADQ61443.1| Membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325685831|gb|EGD27902.1| S54 family peptidase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 223
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 36 LLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 95
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
Y S + S ++ F N A+ GAS A+FGL G+ + ++ Q LA
Sbjct: 96 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCTGFKDKDNTLLSFLGRQALALA 155
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+I N+ + + + +D GHVGGL+ GA ++ +LG A
Sbjct: 156 VI-NLVLDVFMPDVDILGHVGGLITGALLAVILGDA 190
>gi|421879273|ref|ZP_16310744.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
gi|390446828|emb|CCF26864.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
Length = 229
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 159 GAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GAK I Q +WRL T FLHA I H++ N +L +GP E G R+L +Y
Sbjct: 47 GAKWGPDIAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAEHAFGSWRFLMLYAFG 106
Query: 218 AIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRN---ILGGGKEELQHLAKVII 273
I + SY + +VGAS A+F + ++ +R+R+ I G L ++
Sbjct: 107 GIVGNIFSYLLSPLAISVGASSALFAMFAGLILYGVRYRDNPTIRAQGATFLLF----VV 162
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N+ GLL ID WGH+GGL+GG + +LG
Sbjct: 163 LNLFSGLLAPTIDLWGHIGGLIGGMMSTVMLG 194
>gi|315038824|ref|YP_004032392.1| hypothetical protein LA2_08440 [Lactobacillus amylovorus GRL 1112]
gi|325957263|ref|YP_004292675.1| hypothetical protein LAC30SC_08175 [Lactobacillus acidophilus 30SC]
gi|385818055|ref|YP_005854445.1| hypothetical protein LAB52_07605 [Lactobacillus amylovorus GRL1118]
gi|312276957|gb|ADQ59597.1| hypothetical protein LA2_08440 [Lactobacillus amylovorus GRL 1112]
gi|325333828|gb|ADZ07736.1| hypothetical protein LAC30SC_08175 [Lactobacillus acidophilus 30SC]
gi|327183993|gb|AEA32440.1| hypothetical protein LAB52_07605 [Lactobacillus amylovorus GRL1118]
Length = 226
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 8/192 (4%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
V++ + L+ GA N + G Q+WRL T+ FLH + HL+ N + +G +E
Sbjct: 28 VFLGGSENTNVLMKMGAMSNYAVVVGNQWWRLFTAQFLHIGVMHLVSNAVIIYYMGQYIE 87
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGG 260
I G R+L Y + I + MS F + + GAS A+FGL G+ + RNI
Sbjct: 88 PIMGHARFLVTYLLAGIGGNLMSLAFSSDRGLSAGASTALFGLFGAMTA--IGLRNIHNP 145
Query: 261 GKEELQHLAKVI-IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
L A V+ + N+ I + GID WGH+GGL+ G ++ +LG + T + +R
Sbjct: 146 MISFLGRQAFVLALINLGIDIFAPGIDIWGHLGGLIVGFLLAVILGD--RVMKTYNPKWR 203
Query: 320 IFSDRAPIFHLI 331
+ + IF+++
Sbjct: 204 VLAGAVLIFYIV 215
>gi|197302289|ref|ZP_03167348.1| hypothetical protein RUMLAC_01016 [Ruminococcus lactaris ATCC
29176]
gi|197298720|gb|EDY33261.1| peptidase, S54 family [Ruminococcus lactaris ATCC 29176]
Length = 211
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 137 LLAVNVLVYIAQFATQDK-----LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVN 190
L+ VN+ V++ D +L GA +I + Q ++R T FLH I HL+ N
Sbjct: 13 LIIVNIAVFMVLSLLGDTENGYFMLHHGAMYEPMILENQEYYRFFTCMFLHFGIQHLLNN 72
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVG 245
L ++G +E + G +YL +YF S + S +S+ + S + GASGAIFGL+G
Sbjct: 73 MVMLGALGWQLEPVIGKVKYLLIYFISGLGGSGLSFAWNVMHEEQSVSAGASGAIFGLMG 132
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++ +R L G + + +++ + G+ G+DN H+GGL+ G ++ +L
Sbjct: 133 ALLYVVIANRGRL--GDLSGKGMMLMVLLGLYCGMTSTGVDNLAHIGGLVCGFILALIL 189
>gi|449440331|ref|XP_004137938.1| PREDICTED: uncharacterized protein LOC101206123 [Cucumis sativus]
Length = 397
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 127 EVNKVVHGNQLWRLITCIWLHAGVFHLLANMLSLLVIGIRLEQEFGFIRIGLLYVISGFG 186
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F S +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 187 GSLLSSLFIQSNISVGASGALFGLLGGMLSELITNWTIYSNKVAALVTLLVIIAINLAVG 246
Query: 280 LLIKGIDNWGHVGGLLGG 297
+L +DN+ H+GG + G
Sbjct: 247 IL-PHVDNFAHIGGFISG 263
>gi|257869580|ref|ZP_05649233.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357050773|ref|ZP_09111970.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
gi|257803744|gb|EEV32566.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355380925|gb|EHG28057.1| hypothetical protein HMPREF9478_01953 [Enterococcus saccharolyticus
30_1]
Length = 226
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%)
Query: 133 WTNILLAVNVLVYIAQF---ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
+T LA+ LV+I + TQ +++G + + ++WR T F+H +AH V
Sbjct: 14 FTYTFLAIQTLVFIIGYISPMTQVMGVMFGPYVAYM---NEYWRFVTPIFIHFGLAHFAV 70
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSF 247
N L +G +E I G R+ +Y S + +AMS+ F + + GAS ++FGL G+F
Sbjct: 71 NSVILYFMGQQVEAIYGHARFFILYLMSGVMGNAMSFAFNQAGVQSAGASTSLFGLFGAF 130
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ + +N + ++ A ++ N GL + ID WGHV
Sbjct: 131 LILGLHFKNDY-QIQAMVRQFALFVVLNFVFGLFDQSIDIWGHV 173
>gi|86159216|ref|YP_466001.1| rhomboid-like protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775727|gb|ABC82564.1| Rhomboid-like protein [Anaeromyxobacter dehalogenans 2CP-C]
Length = 360
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 147 AQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKI 204
A +T D LL GA ++ + G+ WRL T+AFLH HL+ N + +E+
Sbjct: 38 AHGSTTDPALLARMGALDHARVWDGEPWRLLTAAFLHVGPVHLVWNLAFGVPLCALVERA 97
Query: 205 CGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE 264
G RR+L VY +SA+ SA S + GASGA+FG+ G+ +R +G +
Sbjct: 98 IGTRRFLVVYLASALGGSAASMLAAMPMSAGASGALFGVAGAMLAL---YRRAVGSWRAF 154
Query: 265 LQH----LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
L L +++ A+ L ID W H GGL+ GA + W+
Sbjct: 155 LSSRDIILNGIMLVAFALAGLFLPIDGWAHAGGLVTGAWLGWV 197
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 117 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 176
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N ++GASGA++GL G+ AV +MR N +++ + ++ NM
Sbjct: 177 YLIAAPNQGSLGASGAVYGLFGATAV-LMRRMN------YDMRPVLVLLAINMVFTFTWG 229
Query: 284 GIDNWGHVGGLLGGAAIS 301
GI HVGGL+ G I+
Sbjct: 230 GIAWEAHVGGLIAGVVIA 247
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLL--WGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T ++L +N++++I +++ L L +GA IN Q WR ++ FLHA HL
Sbjct: 19 TCLILLINIVMFIVLTVHGGSENSLTLIRYGALINEEPFTAQLWRYVSAMFLHAGFDHLF 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA-----VGASGAIFGL 243
N +++ P +E++ G RY +Y ++ I + MS N A VGASGAI+G+
Sbjct: 79 FNSFAILVFAPPLERLLGSFRYALLYLATGIVGNVMSIAHYNMAAETTVSVGASGAIYGI 138
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
G+F + R ++ + L ++ F + + I+ H GGLL G
Sbjct: 139 YGAFLYVALFQRTLMDEASR--KTLYTLLGFGILFSFAVANINWTAHFGGLLSG 190
>gi|153853648|ref|ZP_01995028.1| hypothetical protein DORLON_01019 [Dorea longicatena DSM 13814]
gi|149753803|gb|EDM63734.1| peptidase, S54 family [Dorea longicatena DSM 13814]
Length = 204
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)
Query: 134 TNILLAVNVLVYIAQF---ATQDK--LLLWGAK-INSLIDKGQFWRLATSAFLHANIAHL 187
T +L AVNV+V++ T+D +L GA + LI +G+++RL +S FLH HL
Sbjct: 11 TILLAAVNVIVFLVLSFLGMTEDGEFMLKHGAMYVPYLIQRGEYYRLFSSMFLHFGYDHL 70
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF---CNSPAV--GASGAIFG 242
+ N L ++G +E G ++L VYF S +A + +S + S A+ GASGAIFG
Sbjct: 71 VNNMIVLVAMGWNLELDIGKVKFLIVYFVSGLAGNVLSAWWDIQTGSMAISAGASGAIFG 130
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
++G+ +R+R + G + L +I+ + G G+DN H+GGLL G
Sbjct: 131 IIGALLYVAIRNRGRI--GDISGRGLVFMIVLTLYYGFTSGGVDNMAHIGGLLAG 183
>gi|225026638|ref|ZP_03715830.1| hypothetical protein EUBHAL_00889 [Eubacterium hallii DSM 3353]
gi|224956008|gb|EEG37217.1| peptidase, S54 family [Eubacterium hallii DSM 3353]
Length = 343
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 135 NILLAVNVLVYI----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
IL+ NV+V++ A+F + W +++K Q++RL TS FLH
Sbjct: 156 TILVLANVVVFMILSFLGNTTDAEFMAAHGAIDW----MDVVEKHQYYRLFTSMFLHFGA 211
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGA 239
HL+ N L IG +E+I G YL +Y + + + S F N+ + GASGA
Sbjct: 212 DHLLQNMLILLVIGCRLERITGKLSYLLIYIGAGLIGAGTSIIFTLGNNPNTVSAGASGA 271
Query: 240 IFGLVGSFAVFIM-------RHRNILGGGKEELQHLAKVIIFNMAI--GLLIKGIDNWGH 290
IFG++G I+ RHR EE+ + + A+ G GIDN H
Sbjct: 272 IFGVMGGLLYCIISDIIQKKRHR------VEEIGLTGMIFMVASALSYGFFSTGIDNAAH 325
Query: 291 VGGLLGGAAISWL 303
+GGL+GG I+ +
Sbjct: 326 IGGLVGGFLITMI 338
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++++++ + KLL G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIVIWLSMILLLNRFSNIKLLDMGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVF 250
SL G +E I GP + L +Y S + + +S F ++ + GASGAIFGL+G+ V
Sbjct: 222 LSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLSLSFNTDTVSAGASGAIFGLIGAIIVM 281
Query: 251 IM----RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
++ R ++G Q L ++I + LL+ ++ H+GG + G + ++
Sbjct: 282 MIISKVYSRKMIG------QLLIALVIL-IGFSLLLSNVNIMAHLGGFISGLLLIYI 331
>gi|15221690|ref|NP_176500.1| rhomboid -like 2 [Arabidopsis thaliana]
gi|12323258|gb|AAG51610.1|AC010795_14 membrane protein, putative; 61952-60281 [Arabidopsis thaliana]
gi|28393358|gb|AAO42103.1| putative membrane protein [Arabidopsis thaliana]
gi|28827620|gb|AAO50654.1| putative membrane protein [Arabidopsis thaliana]
gi|77999980|dbj|BAE46871.1| Rhomboid family protein AtRBL2 [Arabidopsis thaliana]
gi|332195937|gb|AEE34058.1| rhomboid -like 2 [Arabidopsis thaliana]
Length = 317
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y S + S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163
Query: 225 SYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F S +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L +
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
+DN+ H+GG L G + ++L
Sbjct: 224 -VDNFAHIGGFLTGFCLGFVL 243
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ GA
Sbjct: 187 FILTGLLWGLF-GGIDNAAHIGGLVSGA 213
>gi|357010436|ref|ZP_09075435.1| rhomboid family protein [Paenibacillus elgii B69]
Length = 219
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ LL +GA + WR T+ F+H HL+ N ++L +E++ G RY
Sbjct: 49 ETLLRFGAMYGVPGIEPALWRYVTAIFVHIGFQHLLFNSFALYVFAAPLERMLGSWRYAA 108
Query: 213 VYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
Y +S IA + S F + P + GASGAI+G+ ++ + R+++ + Q +
Sbjct: 109 FYLASGIAGNVASAWFHSDPYIGAGASGAIYGIYAAYLYLSVFRRDLI--DYQTKQTVWT 166
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++I +++ +D + H GG +GG A+S L+
Sbjct: 167 IVIIGFVYSFVVQNVDVYAHAGGFVGGLAVSALM 200
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 31/216 (14%)
Query: 100 LSFFNGGGTRKNSGHEGTSHLDTARTNLF--IGRQWTNILLAVNVLVYIAQFATQDKLLL 157
L ++GG K + + + TA+ +F +G TN+++A+ V AT +L
Sbjct: 63 LKIYSGG---KTQAPQPAAAVKTAKNKVFAKLGYSVTNVIIAITV-------ATSLLAML 112
Query: 158 WGAK-----INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
A N ++ + WR T +H + HL +N YSL +G ++E++ G RYL
Sbjct: 113 IPAVGNFLFFNPILGYKEPWRFLTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLA 172
Query: 213 VYFSSAIASS-------AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+Y +S + S +S VGASGAIFGL AV++++ ++ +
Sbjct: 173 LYVASGLGGSLAVLLWAMVSLDSFYHVTVGASGAIFGLFA--AVYVVQRKS-----GMDA 225
Query: 266 QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ + ++ N+A+G I + GH+GG++ GA +S
Sbjct: 226 RAMGILLAVNLALGFTISNVSWQGHLGGMIVGALMS 261
>gi|241205206|ref|YP_002976302.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859096|gb|ACS56763.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 579
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGG 293
I GL + R R+ G + L+ A I+ + L + ID GH GG
Sbjct: 325 GIVGLFAAVIAASFRFRS--GPIADTLRIGAAQILIPSLLPFLSAARGGENIDYAGHFGG 382
Query: 294 LLGGAAISWLL 304
L GAA+S LL
Sbjct: 383 ALIGAALSSLL 393
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 134 TNILLAVNVLVYIAQFA---TQDK--LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHL 187
T +L+ +N+LV+IA T+D +L GA +I+ +++RL TS FLH I+HL
Sbjct: 10 TIMLIGINILVFIALTMIGRTEDGYFMLQHGAMYEPYIIENQEYYRLFTSLFLHFGISHL 69
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFG 242
+ N L ++G EK G R+L YF S I + +S + + GASGAIFG
Sbjct: 70 LNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGNLLSLYWNIMHDRQIVSAGASGAIFG 129
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L+G + +R L G + + +++ ++ G G+DN HVGGL+ G
Sbjct: 130 LMGGLLWIVFANRGRL--GTLSGRGMLIMVVLSLYFGFTSTGVDNLAHVGGLICG 182
>gi|163838783|ref|YP_001623188.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
gi|162952259|gb|ABY21774.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
Length = 290
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN--IAHLMVNC 191
T +L+A+ VLV+ A+ ++ + A + + WR+ TS F H+ + H++ N
Sbjct: 82 TYVLIALCVLVFAAELIPNANVINYLAY-APFATEQEPWRILTSIFTHSTTFLPHILFNM 140
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAV 249
YSL +G +E + G R+ ++ S +A S + +S VGASGAIFGL G+ V
Sbjct: 141 YSLYILGTVLEPVLGRLRFFALFLVSGLAGSVGVLLIAPVDSVVVGASGAIFGLFGALFV 200
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GHVGGLLGGAAISWLL 304
++ R +L+ + +++ N IG L W H+GGL+GGA ++ +L
Sbjct: 201 LQLKRRG-------DLRQIIVLLVVNAVIGFLPGANIAWQAHLGGLIGGALVAAIL 249
>gi|226362918|ref|YP_002780698.1| rhomboid family protein [Rhodococcus opacus B4]
gi|226241405|dbj|BAH51753.1| rhomboid family protein [Rhodococcus opacus B4]
Length = 306
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----------WGAKINSLIDKGQFWRLATSAFLHAN 183
T IL+A NV +++ A ++ W +++D GQ R+ S FLH
Sbjct: 85 TYILMAANVGIFLITAAQSRSIMQNQAGSTLFADWALFPPAVVD-GQLVRVIGSGFLHFG 143
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFG 242
+ HL VN ++L IG E + G RY VYF+S + SA F ++ GASGA+FG
Sbjct: 144 LIHLAVNMFALWIIGRDTELVLGRARYACVYFASILGGSAAVMLFQLHAVTAGASGAVFG 203
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
L+G+ AV ++R R + VI N+ I + I GI WGH
Sbjct: 204 LMGAQAVILLRLR-------RSPAPVISVIAINVIISITIPGISLWGH 244
>gi|116252699|ref|YP_768537.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257347|emb|CAK08442.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 579
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 134 TNILLAVNVLVY-----------IAQFATQDKLLLWGAKI-NSLIDKGQFWRLATSAFLH 181
T ILLA + VY +A T L + G S+++ GQ+WRL T+ F+H
Sbjct: 206 TYILLATLIAVYAGELTFGLEPPVAGTPTNWTLFVLGGTFRQSIVEHGQWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP---AVGASG 238
I HL NC SL G E++ G R + ++F+SA+ S S + N+P VGASG
Sbjct: 266 GGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGSVASV-WINAPNTIGVGASG 324
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGG 293
I GL + R R+ G + L+ A I+ + L + ID GH GG
Sbjct: 325 GIVGLFAAVIAASFRFRS--GPIADTLRIGAAQILIPSLLPFLSAARGGENIDYAGHFGG 382
Query: 294 LLGGAAISWLL 304
L GAA+S LL
Sbjct: 383 ALIGAALSSLL 393
>gi|328957643|ref|YP_004375029.1| membrane endopeptidase [Carnobacterium sp. 17-4]
gi|328673967|gb|AEB30013.1| membrane endopeptidase [Carnobacterium sp. 17-4]
Length = 229
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T LL + +L ++ T D L+ +GAK N I G++WRL T FLH H
Sbjct: 13 TYALLIIQILAFVLM--TLDGGSTNVATLIKYGAKFNPYIVLGEWWRLITPMFLHIGFIH 70
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246
L++N L +G +E + G R+ G+Y S IA + S+ F ++ + GAS A+FGL GS
Sbjct: 71 LLMNSVILYYLGEQLEGMFGHLRFAGIYLLSGIAGNLASFAFSDALSAGASTALFGLFGS 130
Query: 247 FAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGID 286
+ ++ +Q +AK +II N+ G+ ID
Sbjct: 131 TIMLGQTFKH-----NPAIQQMAKSFGTLIIINIVFGIFSSSID 169
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|42519493|ref|NP_965423.1| hypothetical protein LJ1618 [Lactobacillus johnsonii NCC 533]
gi|385826288|ref|YP_005862630.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837977|ref|ZP_12484215.1| GlpG protein [Lactobacillus johnsonii pf01]
gi|41583781|gb|AAS09389.1| hypothetical protein LJ_1618 [Lactobacillus johnsonii NCC 533]
gi|329667732|gb|AEB93680.1| hypothetical protein LJP_1358c [Lactobacillus johnsonii DPC 6026]
gi|338761520|gb|EGP12789.1| GlpG protein [Lactobacillus johnsonii pf01]
Length = 228
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWR 173
+ TN F TN +L V +V+I + + L+ GA N L+ + Q+WR
Sbjct: 1 MQKLNTNRFSSTFVTNAILIVLFVVFIIETIMGGSTNINTLVRLGAMNNQLVTVEHQWWR 60
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L T+ FLH H+ N + +G ME + G R+L VY S I + +SY + +
Sbjct: 61 LFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYGSDSV 120
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
V GAS A+FGL G + +R I Q LA II N+A+ L ID GH+
Sbjct: 121 VSAGASTALFGLFGVVIALYLANRAIPAINYLGRQALALAII-NLALDLFASHIDILGHL 179
Query: 292 GGLLGGAAISWLLGPA 307
GGL+ G + + G A
Sbjct: 180 GGLISGFLLGIIFGSA 195
>gi|297837099|ref|XP_002886431.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
gi|297332272|gb|EFH62690.1| hypothetical protein ARALYDRAFT_893154 [Arabidopsis lyrata subsp.
lyrata]
Length = 317
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA I HL+ N SL IG +E+ G R +Y S + S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163
Query: 225 SYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F S +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L +
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223
Query: 284 GIDNWGHVGGLLGGAAISWLL 304
+DN+ H+GG L G + ++L
Sbjct: 224 -VDNFAHIGGFLTGFCLGFVL 243
>gi|385816085|ref|YP_005852476.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325126122|gb|ADY85452.1| Putative membrane protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 223
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 36 LLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 95
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF--AVFIMRHRNILGGGKEELQHLA 269
Y S + S ++ F N A+ GAS A+FGL G+ A F + +L + LA
Sbjct: 96 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKDNTLLSFLGRQAWALA 155
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ N+ + + + +D GHVGGL+ GA ++ +LG A
Sbjct: 156 ---VINLVLDVFMPDVDILGHVGGLITGALLAVILGDA 190
>gi|300780117|ref|ZP_07089973.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
gi|300534227|gb|EFK55286.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
Length = 215
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 171 FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-C 229
+ R TS FLH +I+HL+VN + L IGP +E+ G Y+ Y + + SA F
Sbjct: 59 YLRALTSGFLHVDISHLVVNLFVLVFIGPVVERFVGTGPYVAAYLACILGGSAAVLFFGF 118
Query: 230 NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWG 289
P GASGA++GL+ R+R +L+ ++ N+ L++ G+ WG
Sbjct: 119 AQPTAGASGALYGLMAILVAIAARNR-------ADLRAPLVLVAGNLVFTLVMPGVSLWG 171
Query: 290 HVGGLLGGAAIS 301
H+GG++ GA I+
Sbjct: 172 HLGGMVTGALIA 183
>gi|238853801|ref|ZP_04644167.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
gi|238833610|gb|EEQ25881.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
Length = 228
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 134 TNILLAVNVLVYIAQF-----ATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHL 187
TN +L V +V+I + + LL GA N L+ + Q+WRL T+ FLH H+
Sbjct: 15 TNTILVVLFIVFILETIMGGSTNINTLLRLGAMNNQLVTVEHQWWRLFTAQFLHIGWLHI 74
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVG 245
N + +G ME + G R+L VY S I + +SY + + V GAS A+FGL G
Sbjct: 75 ASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGSDSVVSAGASTALFGLFG 134
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ +R I Q LA II N+A+ L ID GH+G L+ G + + G
Sbjct: 135 VVIALYLANRAIPAINYLGKQALALAII-NLALDLFASHIDILGHLGDLISGFLLGIIFG 193
Query: 306 PA 307
A
Sbjct: 194 SA 195
>gi|432601198|ref|ZP_19837451.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
gi|431143593|gb|ELE45316.1| 40-residue YVTN family beta-propeller [Escherichia coli KTE66]
Length = 625
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEAVDQSALIHLGANVTSLTLSGESWRLLSSVFLHSSFPHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAI--ASSAMSYRFCNSP----AVGASGAIFGLVG- 245
+L +G E+I G R L ++ S + ++ Y S +VGASGAI G+ G
Sbjct: 83 ALLVVGAVAERILGKWRLLIIWLFSGVFGGLTSACYALRESEQIVISVGASGAIMGIAGA 142
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ A + + + L ++ + G GIDN H+GGL+ G A+ L
Sbjct: 143 AIATQLASGAGTYHKNQRRVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGAMGGL 200
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 136 ILLAVNVLVYIAQFATQDKLLLWGA-KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+L A NV++++ T D L + G LI +++RL T+ FLHA+I+HL+ N L
Sbjct: 23 VLTAANVIIFLVCQFTGDWLYIKGEFGAFYLIRSQEYYRLVTAMFLHADISHLVNNMILL 82
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAV 249
G +EK G RYL ++F S I + ++ F S ++GASGA+FGL+G
Sbjct: 83 YFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAIFEVSTGMYFNSIGASGAVFGLIGGLLY 142
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ + + ++ + +I ++ G ++N H+GGLL G I+++L
Sbjct: 143 LVITRKGY--AAQISVRRMILMIALSLYSGFQSVRVNNAAHLGGLLSGFLITFIL 195
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL TS FLH + H+ N L +G +E G RYL +Y S +A SA++
Sbjct: 132 VAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALT 191
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N ++GASGA++GL G+ AV +MR N +++ + ++ NM
Sbjct: 192 YLIAAPNQGSLGASGAVYGLFGATAV-LMRRMNY------DMRPVLVLLAINMVFTFTWG 244
Query: 284 GIDNWGHVGGLLGGAAIS 301
GI HVGGL+ G I+
Sbjct: 245 GIAWEAHVGGLIAGVVIA 262
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 131 RQWTNILLAVNVLVYIAQFATQDKL-----LLWGAKINSL-----IDKGQFWRLATSAFL 180
R T +L+A+N+ V++ A D L+ A+ S + +G+++RL T+ FL
Sbjct: 125 RLITKVLIALNLAVFVLVKAAPDSARLLDDLVMVARFPSYPQPIGVAEGEWYRLLTATFL 184
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASG 238
H + H+ +N SL +G +E + G R+L +Y + + S S+ F + ++GASG
Sbjct: 185 HEEVWHIGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVASFLFADPLGASLGASG 244
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
AIFGL G+ V ++R R + + +++ N+ I GI H+GGL+ G
Sbjct: 245 AIFGLFGATGVLVLRVR-------ADFRPFVALLVINLIITFGWSGIAWQAHIGGLVVGT 297
Query: 299 AIS 301
++
Sbjct: 298 LLA 300
>gi|114048685|ref|YP_739235.1| rhomboid family protein [Shewanella sp. MR-7]
gi|113890127|gb|ABI44178.1| Rhomboid family protein [Shewanella sp. MR-7]
Length = 520
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ FA+Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 331 TPILLYINSLIFVLMAFASQHFIAFPNSVLLDWGANLRQLVLEQQVWRLLSNVFLHGGLM 390
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R LGVY + +S S + + ++GASGAI GL
Sbjct: 391 HLVFNLYGLFFAGMFLEPLLGKWRLLGVYVCCGLVASLASIGWYEATISIGASGAIMGLF 450
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +L + ++ +GL G+DN H
Sbjct: 451 GVLIIWIWLGLLPLADNMPLALNLTLFVSASLVMGLF-GGVDNAAH 495
>gi|403331557|gb|EJY64731.1| Rhomboid family protein [Oxytricha trifallax]
Length = 278
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ------------DKLLLWGAKINSLID-KGQFWRLATS 177
RQ+ ++ V VYIA A + + L +G K + + Q WR
Sbjct: 43 RQFIFVISIVQCGVYIASVAYKGISNNGLLAPQSEALFDFGQKYPYYMRYQYQVWRFIMP 102
Query: 178 AFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGAS 237
FLHA+ HL N +S G +E G + +YF S I S ++ +VGAS
Sbjct: 103 IFLHADFVHLTSNIFSQFVFGSYLESTIGFFNFTILYFLSGIGGILFSSLASDATSVGAS 162
Query: 238 GAIFGLVGSFAVFIMRH-RNILGGGKEELQHLAKVIIFNMAIGLLI--------KGIDNW 288
AIFGL+GSFA +++ + +N+ + + Q + IF + IGLL+ ID+
Sbjct: 163 TAIFGLMGSFAAYLIVNWKNL----ERQPQQKYTIAIF-LIIGLLMNLTQAQSNSKIDSI 217
Query: 289 GHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLI 331
GH+GG L G +S LG L T+D + F LI
Sbjct: 218 GHLGGFLTGLILSLFLGQTLP---TTDRSIMKYQKAMKTFGLI 257
>gi|145337690|ref|NP_177909.2| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332197915|gb|AEE36036.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 351
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G +L + + WR+ TS +LH+ + HL +N SL +G ME+ GP R +YF S
Sbjct: 110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I S + F N P++ + A FGL+G+ + ++ N+ L + + N
Sbjct: 170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSD 323
IG L IDN+ ++GG + G + ++L P L+ S G ++F D
Sbjct: 230 IGFL-PFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKG-KLFED 275
>gi|226504776|ref|NP_001142335.1| membrane protein [Zea mays]
gi|194708266|gb|ACF88217.1| unknown [Zea mays]
gi|224034285|gb|ACN36218.1| unknown [Zea mays]
gi|414886370|tpg|DAA62384.1| TPA: membrane protein [Zea mays]
Length = 324
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 105 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 164
Query: 223 AMSYRFCNSP--AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F + +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 165 VLSALFLRNSYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 224
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L +DN+ H+GG G + ++L
Sbjct: 225 L-PHVDNFAHIGGFATGFLLGFVL 247
>gi|195622898|gb|ACG33279.1| membrane protein [Zea mays]
Length = 226
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 7 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 66
Query: 223 AMSYRFCNSP--AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F + +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 67 VLSALFLRNSYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 126
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L +DN+ H+GG G + ++L
Sbjct: 127 L-PHVDNFAHIGGFATGFLLGFVL 149
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|104774327|ref|YP_619307.1| hypothetical protein Ldb1479 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423408|emb|CAI98279.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 215
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 28 LLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 87
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF--AVFIMRHRNILGGGKEELQHLA 269
Y S + S ++ F N A+ GAS A+FGL G+ A F + +L + LA
Sbjct: 88 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKDNTLLSFLGRQALALA 147
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ N+ + + + +D GHVGGL+ GA ++ +LG A
Sbjct: 148 ---VINLVLDVFMPDVDILGHVGGLITGALLAVILGDA 182
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 14/139 (10%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 183
Query: 284 GID----NW-GHVGGLLGG 297
+ +W GHVGGL+ G
Sbjct: 184 AVGSQLISWQGHVGGLITG 202
>gi|297847644|ref|XP_002891703.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297337545|gb|EFH67962.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 309
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA L+++G+ WRL + +LH HLM N SL IG +E+ G R +Y S
Sbjct: 94 GALERRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISG 153
Query: 219 IASSAMSYRFC------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+ S MS C +VGASGA+FGL+G+ ++ + I L L +I
Sbjct: 154 LGGSLMS---CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLVLII 210
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDD 316
+ N+++G L + +DN H GG L G + ++L +Y + S
Sbjct: 211 VLNLSVGFLPR-VDNSAHFGGFLAGFFLGFVLLLRPQYGYVSPK 253
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 123 ARTNLFIGRQW-TNILLAVNVLVYI------AQFATQDKLLLW--GAKINSLIDKGQFWR 173
A T L G+ + T L+ +N+L+++ F ++ G + S + G++WR
Sbjct: 5 ATTRLPAGKPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWR 64
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L TS FLH ++ H+ VN SL +G +E G RY+ VY + + SA F N A
Sbjct: 65 LLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMSRYVAVYLIALLGGSAAVMLFENDRA 124
Query: 234 V--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ GASGAI+GL+G+ V I++ R + +I FN+ + + GI GH
Sbjct: 125 LTAGASGAIYGLMGAMLVIILKAR-------VSPVPVLLIIGFNVVLSFSLPGISVLGH 176
>gi|357444041|ref|XP_003592298.1| Rhomboid family member [Medicago truncatula]
gi|355481346|gb|AES62549.1| Rhomboid family member [Medicago truncatula]
Length = 314
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
+++ + Q WRL T +LHA I HL+ N L IG +E+ G + +Y S S
Sbjct: 103 NVVHQHQEWRLFTCIWLHAGIIHLLSNMLCLVLIGIRLEQQFGFVKIGLIYLLSGFGGSV 162
Query: 224 MSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S F NS +VGAS A+FGL+G+ ++ + I L L +I N+ IGLL
Sbjct: 163 FSSIFIRNSISVGASSALFGLLGAMISELLTNWTIYSNKVMALLTLLVMIAINLTIGLLP 222
Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALKYE 311
+ +DN H+GGL+ G + ++L P +Y+
Sbjct: 223 R-VDNLAHIGGLVVGFLLGFILLPRPQYD 250
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|226494277|ref|NP_001151264.1| membrane protein [Zea mays]
gi|195645390|gb|ACG42163.1| membrane protein [Zea mays]
Length = 414
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 151 TQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+ LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R
Sbjct: 132 SSATLLEMGALETSKVTKDHEGWRLITCIWLHAGVVHILANMLSLLMIGIRLEKEFGFIR 191
Query: 210 YLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L
Sbjct: 192 IGTLYVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTL 251
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+I+ N+A+G+L +DN+ H+GG + G + ++L
Sbjct: 252 VMIILINLAVGIL-PHVDNFAHLGGFMSGFCLGFVL 286
>gi|383806768|ref|ZP_09962329.1| hypothetical protein IMCC13023_02910 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299198|gb|EIC91812.1| hypothetical protein IMCC13023_02910 [Candidatus Aquiluna sp.
IMCC13023]
Length = 199
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 11/168 (6%)
Query: 138 LAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLH--ANIAHLMVNCYSLN 195
+A+NV++++ Q + L L + WR+ T+ F+H H+++N Y++
Sbjct: 1 MALNVVIWLGQISPVGYLFTNQMFFAPLFAPFEPWRMLTAGFVHDWTGPFHILLNSYAIW 60
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMR 253
G +E + GP R+L +Y ++ + S + P VGASGA+FGL+G++ FI+
Sbjct: 61 IFGRILEPLLGPVRFLVMYLTAIVGGSVAVMWLSDPQVPVVGASGALFGLMGAY--FIVV 118
Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
GG ++ L + N +G + GI GH+GGL+ G AI+
Sbjct: 119 RST--GGNSTQIFTLIAI---NFGLGFFVSGISWEGHLGGLVTGLAIA 161
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N + G+++R+ TS FLH + H+ N L +G +E G RYL +Y S +A S
Sbjct: 120 NVGVADGEWYRILTSVFLHQEVWHIGFNMLGLWMLGGPLEAALGRVRYLALYLLSGLAGS 179
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
A++Y N P++GASGA+FGL+G+ V + R R + + + +I N+ I
Sbjct: 180 ALTYVLVAPNQPSLGASGAVFGLMGATFVLLRRLRY-------DPRPVLGLIALNVLITF 232
Query: 281 LIKGIDNW-GHVGGLLGGAAISW 302
+ + W H+GGL+ GA +++
Sbjct: 233 VFRDTIAWQAHLGGLVAGAVVAY 255
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|399526757|ref|ZP_10766509.1| peptidase, S54 family [Actinomyces sp. ICM39]
gi|398362686|gb|EJN46363.1| peptidase, S54 family [Actinomyces sp. ICM39]
Length = 290
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 172 WRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-- 229
W + T AFLH + H++ N SL +G +E + G R+L VY SA+ SA +C
Sbjct: 111 WTILTGAFLHGGLLHILFNMLSLYWVGRAIEPVMGWWRFLTVYLVSALGGSAFIIAWCLI 170
Query: 230 -----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
VGAS A+FGL G AVF+++ LGG + + ++ N+ G ++ G
Sbjct: 171 QPSEIYVSTVGASAAVFGLFG--AVFVLQR---LGG--SDTTAILTLLGVNLVYGFMVSG 223
Query: 285 IDNWGHVGGLLGGAAISWLL 304
I GH+GG + G A +W+L
Sbjct: 224 ISWQGHIGGAIAGVAATWVL 243
>gi|332148745|dbj|BAK20219.1| Rhomboid family KOMPEITO [Arabidopsis thaliana]
Length = 385
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G +L + + WR+ TS +LH+ + HL +N SL +G ME+ GP R +YF S
Sbjct: 110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I S + F N P++ + A FGL+G+ + ++ N+ L + + N
Sbjct: 170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSD 323
IG L IDN+ ++GG + G + ++L P L+ S G ++F D
Sbjct: 230 IGFL-PFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKG-KLFED 275
>gi|194703068|gb|ACF85618.1| unknown [Zea mays]
gi|195643104|gb|ACG41020.1| membrane protein [Zea mays]
gi|219888419|gb|ACL54584.1| unknown [Zea mays]
gi|224031257|gb|ACN34704.1| unknown [Zea mays]
gi|414591379|tpg|DAA41950.1| TPA: membrane protein [Zea mays]
Length = 327
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 108 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 167
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 168 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 227
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG G + ++L
Sbjct: 228 LPHA-DNFAHIGGFATGFLLGFVL 250
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S + S S + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 154 KLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
+++W + N + G++WRL T FLHAN HL+ N SL P +E++ G R+
Sbjct: 38 SVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRF 97
Query: 211 LGVYFSSAIASSAMSY--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
L VY +S I + +Y + VGASGAIFGL G + + + ++ G+++ + +
Sbjct: 98 LVVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELI--GRDQSKMI 155
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
++I + + I+ H+ GL GG
Sbjct: 156 MTLLIIAVLSTFINSNINIMAHLFGLAGG 184
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 136 ILLAVNVLVYI-AQFATQDKLLLWGAKI--------NSLIDKGQFWRLATSAFLHANIAH 186
+L+AVNV+V++ F +D + + + + +++ ++WRL TS FLH + H
Sbjct: 97 LLIAVNVVVFVLTAFQARDAMNNYNSPVFAEGVLWPQAVVAFDEWWRLITSGFLHYGLLH 156
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L +N +L +G +E + G R+L VYF S + A + F + GASGAI+GL+
Sbjct: 157 LAMNMLALWVLGRDLEMLLGRVRFLAVYFVSMLGGGAAVFAFGAPETSTAGASGAIYGLM 216
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGL 294
G+ V ++R R +I+ N+ + + I I GH+GGL
Sbjct: 217 GAMLVAVLRLR-------LNPTTAIGIIVLNLILTVSIPNISLLGHLGGL 259
>gi|430741443|ref|YP_007200572.1| hypothetical protein Sinac_0438 [Singulisphaera acidiphila DSM
18658]
gi|430013163|gb|AGA24877.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 654
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 134 TNILLAVNVLVYIAQFA--------TQDKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
T ++ A VLVY+A A + +L WGA S++ Q WRL TS FLH +
Sbjct: 273 TPLMAAACVLVYVAMVARGVSPIDPSPRVMLDWGASFGPSVVFDRQVWRLLTSMFLHFGL 332
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFG 242
HL +N + L + GP +E+ G + +Y S + +A S F + + GASGAIFG
Sbjct: 333 IHLAMNLWCLLTTGPVVERFFGHLGFAALYVLSGLGGAAASL-FVHPTFICAGASGAIFG 391
Query: 243 LVGSFAVFI-MRHRNILGGGKEELQHLAKVII-FNMAIGLLIKGIDNWGHVGGLLGGAAI 300
+ G F+ +RHR++ + ++ + +N+ GL ID H+GGL G +
Sbjct: 392 VFGGLLGFLAIRHRDVPPAILQPMRSGTLAFLGYNVLFGLTSSTIDMAAHLGGLATGFVV 451
Query: 301 SWLLG 305
+L
Sbjct: 452 GLVLA 456
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 155 LLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 358 LLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLI 415
Query: 213 VY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 416 LYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTF 475
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 476 ILTGLLWGLF-GGIDNAAHIGGLVSGT 501
>gi|363808368|ref|NP_001242000.1| uncharacterized protein LOC100784671 [Glycine max]
gi|255639055|gb|ACU19828.1| unknown [Glycine max]
Length = 330
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+ +++ Q WRL T +LHA + HL N SL IG +E+ G R +Y S S
Sbjct: 110 DDVVNHHQAWRLVTCIWLHAGVVHLAANMLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGS 169
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F N+ +VGASGA+FGL+G+ ++ + +I L L +I+ N+AIG+L
Sbjct: 170 VLSSLFIRNNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLLFIIVINLAIGML 229
Query: 282 IKGIDNWGHVGGLL 295
+D++ H+GG L
Sbjct: 230 -PHVDDFAHIGGFL 242
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+AVN+++++A + K+L G ++ + G+++RL +S FLH + H++
Sbjct: 159 TYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHFNVVHGEWYRLISSIFLHYDFEHIL 218
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R + +Y + + + S F ++ + GASGAIFGL+G+
Sbjct: 219 MNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGAI 278
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
F+ + ++ + L V++ + + L ++ I+ H+GG +GG I+ L+G
Sbjct: 279 FGFMYVGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAHIGGFVGGLLIT-LIGYY 334
Query: 308 LK 309
K
Sbjct: 335 FK 336
>gi|110430670|gb|ABG73460.1| membrane protein [Oryza brachyantha]
Length = 326
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 107 NKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 166
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 167 VLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGI 226
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG + G + ++L
Sbjct: 227 LPHA-DNFAHIGGFVTGFLLGFVL 249
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 21/171 (12%)
Query: 134 TNILLAVNVLV-----YIAQFATQDKLLLWGAKINSLIDKG------QFWRLATSAFLHA 182
T +L+ +N+LV Y+ Q ++ L ++ G +++RL ++ F+H
Sbjct: 94 TKVLIGINLLVFLFTQYVDQSWQKNPLGMYSWAPAPWERHGVAEGPLEWYRLVSAQFVHG 153
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAI 240
+ H+ N +SL +GP +E++ G RYL +Y S IA +A+ Y + AVGASGAI
Sbjct: 154 GLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGNALGYLLTGADMWAVGASGAI 213
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GH 290
FGL+G+ AV R +Q + +++ N+ + + + +W GH
Sbjct: 214 FGLLGATAVLFRVTRT-------PMQPVIALLVVNLVMTFSLHSVIDWRGH 257
>gi|418995635|ref|ZP_13543249.1| rhomboid family protein [Escherichia coli DEC1A]
gi|377849025|gb|EHU14001.1| rhomboid family protein [Escherichia coli DEC1A]
Length = 199
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 138 LAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
L V + Y+AQ+ + Q L+ GA + SL G+ WRL +S FLH++ +HL++N +
Sbjct: 23 LCVGIFCYLAQWMSYEEVDQSALIHLGANVASLTLSGEPWRLLSSVFLHSSFSHLLMNMF 82
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSP----AVGASGAIFGLVGS 246
+L ++G E+I G R L ++ S I +S Y S +VGASGAI G+ G+
Sbjct: 83 ALLAVGTVAERILGKWRLLIIWLFSGIFGGLISACYALRESEQIVISVGASGAIMGIAGA 142
Query: 247 FAVFIM------RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
+ H+N + + L ++ + G GIDN H+GGL+ GA
Sbjct: 143 AIATQLASGAGTHHKN-----QRRVFPLLGMVALTLLYGTRQTGIDNACHIGGLIAGA 195
>gi|357159526|ref|XP_003578474.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 330
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 111 NKVVHEHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 170
Query: 223 AMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I NMAIG+
Sbjct: 171 VLSALFLRSNYISVGASGALFGLLGSMLSELIMNWTIYSNKVAAIITLLFIIAINMAIGI 230
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG + G + ++L
Sbjct: 231 LPHA-DNFAHIGGFVTGFLLGFVL 253
>gi|237845307|ref|XP_002371951.1| rhomboid family domain-containing protein [Toxoplasma gondii ME49]
gi|211969615|gb|EEB04811.1| rhomboid family domain-containing protein [Toxoplasma gondii ME49]
Length = 293
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
W ++ V + + + L+ +GA LI +GQ WRL FLHAN H+ N
Sbjct: 70 DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 129
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSPAVGASGAIFGLVG---- 245
+ +G T+E+ G ++ G+YF+SAI + +S FCNS VGAS A FGL+G
Sbjct: 130 FFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQIC 189
Query: 246 --SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ MRHR+ + L +++F + G ID GH+GGLL G +I L
Sbjct: 190 EMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGG----SIDQMGHLGGLLCGFSIGML 245
>gi|326514946|dbj|BAJ99834.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+V+ SL IG +E+ G R +Y S S
Sbjct: 102 NKVVHQHQGWRLISCIWLHAGLIHLVVDMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 161
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
MS F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 162 VMSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKVAAIITLLFIIAINVAIGI 221
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG L G + ++L
Sbjct: 222 LPHA-DNFAHIGGFLTGFLLGFVL 244
>gi|392955180|ref|ZP_10320725.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
gi|391878845|gb|EIT87420.1| hypothetical protein A374_00560 [Bacillus macauensis ZFHKF-1]
Length = 198
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 137 LLAVNVLVYIAQFATQDKLLLWGAKI--NSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
+LA+ ++VY+ T ++ L I N I +G++WRL T H HL+ N +SL
Sbjct: 21 ILAIQLIVYVLMTFTPLEVELSTTFIGYNEAISQGEYWRLITPLITHIEFPHLLFNSFSL 80
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIM 252
GP +E++ G ++ YF S I S + N +GAS AIFGL G + +
Sbjct: 81 FIFGPLLERLLGKGLFIISYFGSGILSHLLLLYLLPENYAYLGASSAIFGLYGVYTYLLF 140
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLL-IKGIDN--WGHVGGLLGGAAIS 301
++IL G E Q L +I+ + + + + G + +GH+ G LGG ++
Sbjct: 141 FKKHIL--GTEGRQLLLPLIVIGLILSFVSLDGSEGIVYGHLFGFLGGVVLA 190
>gi|297171861|gb|ADI22850.1| uncharacterized membrane protein (homolog of Drosophila rhomboid)
[uncultured nuHF2 cluster bacterium HF0500_31B05]
Length = 232
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 11/163 (6%)
Query: 156 LLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L++G L+ + G +W L T+ +LH + H+ N + +GP +E++ GP R ++
Sbjct: 51 LMFGMTGGGLVYQYGHWWTLITAIYLHGGLLHIFFNMMWVRQLGPLVEELFGPFRLFTIF 110
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ IA +S ++ +GASG+IFGL+ + V+ R + L ++ LQ + +F
Sbjct: 111 TVAGIAGFWLSATMGHNATLGASGSIFGLLATAIVYGRRSGSSL-FTRQFLQWAGILFVF 169
Query: 275 NMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDG 317
GL+ GIDNW H+GG +GG ++ ++ FT +G
Sbjct: 170 ----GLVFPGIDNWAHLGGFVGGYGVA-----SIFVRFTGREG 203
>gi|357114368|ref|XP_003558972.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 331
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 10/206 (4%)
Query: 95 AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDK 154
FA ++ + N N+G G S F+GR ++ L N L+ + AT +K
Sbjct: 47 VFAITMYYNNCPAHNANTGTRGGSKQQQQCVAGFLGR-FSFQPLRQNPLLGPSS-ATLEK 104
Query: 155 L--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
+ L+W + ++ Q WRL + +LHA I HL+ N SL IG +E+ G R
Sbjct: 105 MGALVW----DKVVHSHQGWRLLSCMWLHAGILHLLANMLSLLFIGLRLEQQFGYVRIGA 160
Query: 213 VYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKV 271
+Y S I S +S F S +VGASGA+FGL+G+ ++ + I + L V
Sbjct: 161 IYLLSGIGGSVLSSLFIRTSISVGASGALFGLLGAMLSELLTNWTIYTNKVAAVMTLLFV 220
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGG 297
I N+ +G+L ++N+ H+GG L G
Sbjct: 221 ITVNLVLGIL-PHVNNFAHIGGFLAG 245
>gi|74786306|sp|Q695U0.1|RHBL1_TOXGO RecName: Full=Rhomboid-like protease 1
gi|47500375|gb|AAT29065.1| rhomboid-like protease 1 [Toxoplasma gondii]
gi|221480635|gb|EEE19082.1| Rhomboid-like protease 1 [Toxoplasma gondii GT1]
gi|221501391|gb|EEE27169.1| rhomboid-like protease ROM1 [Toxoplasma gondii VEG]
Length = 293
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
W ++ V + + + L+ +GA LI +GQ WRL FLHAN H+ N
Sbjct: 70 DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 129
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSPAVGASGAIFGLVG---- 245
+ +G T+E+ G ++ G+YF+SAI + +S FCNS VGAS A FGL+G
Sbjct: 130 FFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQIC 189
Query: 246 --SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ MRHR+ + L +++F + G ID GH+GGLL G +I L
Sbjct: 190 EMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGG----SIDQMGHLGGLLCGFSIGML 245
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 134 TNILLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T L+AVN+++++A + K+L G ++ + G+++RL +S FLH + H++
Sbjct: 65 TYTLIAVNIIIWLAMVLFLNRFSDLKMLDVGGLVHFNVVHGEWYRLISSIFLHYDFEHIL 124
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSF 247
+N SL G +E I G R + +Y + + + S F ++ + GASGAIFGL+G+
Sbjct: 125 MNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFASLSFNIDTVSAGASGAIFGLIGAI 184
Query: 248 AVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
F+ + ++ + L V++ + + L ++ I+ H+GG +GG I+ L+G
Sbjct: 185 FGFMYVGKQF---NRKLIGQLLIVLVIMIGLSLFMQNINIVAHIGGFVGGLLIT-LIGYY 240
Query: 308 LK 309
K
Sbjct: 241 FK 242
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL----LWGAKINSLIDK------GQFWRLATSAFLHAN 183
T IL+ +N+ V++A A D+ + L G + L+ + GQ++RL TS FLH +
Sbjct: 88 TKILIGINLAVFVAVLALGDRFVDEMSLIGLAYSPLLGEVVGLADGQWYRLLTSVFLHQD 147
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIF 241
++H+ N +L +G +E G R+L +Y S + Y N +GASGAIF
Sbjct: 148 LSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLSEPNQATIGASGAIF 207
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
GLVG+FAV ++R N+ +L+ + +I ++ + ++ G +W
Sbjct: 208 GLVGAFAV-LLRRMNL------DLRPVGLIIAISVVLTVVRPGEISW 247
>gi|295693318|ref|YP_003601928.1| hypothetical protein LCRIS_01456 [Lactobacillus crispatus ST1]
gi|295031424|emb|CBL50903.1| Membrane protein [Lactobacillus crispatus ST1]
Length = 228
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
V++ + L+ GA N + G Q+WRL + FLH I HL+ N + +G ME
Sbjct: 30 VFLGGSENTNVLMKMGAMNNFAVVAGHQWWRLFMAQFLHIGIMHLVSNAIIIYYMGQYME 89
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNIL 258
+ G R+L Y + + + MS F + GAS A+FGL G+ +R H ++
Sbjct: 90 PLMGHVRFLVTYLLAGVGGNLMSLAFSADRGLSAGASTALFGLFGAMTAIGLRNLHNPMI 149
Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ LA + N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 150 AFLGRQAFVLALI---NLALDIFVPGIDIWGHIGGLIAGFLLAIILG 193
>gi|115480259|ref|NP_001063723.1| Os09g0525900 [Oryza sativa Japonica Group]
gi|52076044|dbj|BAD46497.1| putative membrane protein [Oryza sativa Japonica Group]
gi|52077312|dbj|BAD46353.1| putative membrane protein [Oryza sativa Japonica Group]
gi|113631956|dbj|BAF25637.1| Os09g0525900 [Oryza sativa Japonica Group]
gi|125564435|gb|EAZ09815.1| hypothetical protein OsI_32104 [Oryza sativa Indica Group]
gi|125606379|gb|EAZ45415.1| hypothetical protein OsJ_30065 [Oryza sativa Japonica Group]
gi|215700990|dbj|BAG92414.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765558|dbj|BAG87255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 323
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 104 NKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 163
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+
Sbjct: 164 VLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGI 223
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG + G + ++L
Sbjct: 224 LPHA-DNFAHIGGFVTGFLLGFVL 246
>gi|227877719|ref|ZP_03995755.1| S54 family peptidase [Lactobacillus crispatus JV-V01]
gi|312984383|ref|ZP_07791722.1| putative small hydrophobic molecule transporter protein
[Lactobacillus crispatus CTV-05]
gi|227862707|gb|EEJ70190.1| S54 family peptidase [Lactobacillus crispatus JV-V01]
gi|310894227|gb|EFQ43310.1| putative small hydrophobic molecule transporter protein
[Lactobacillus crispatus CTV-05]
Length = 228
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 144 VYIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
V++ + L+ GA N + G Q+WRL + FLH I HL+ N + +G ME
Sbjct: 30 VFLGGSENTNVLMKMGAMNNFAVVAGHQWWRLFMAQFLHIGIMHLVSNAIIIYYMGQYME 89
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNIL 258
+ G R+L Y + + + MS F + GAS A+FGL G+ +R H ++
Sbjct: 90 PLMGHVRFLVTYLLAGVGGNLMSLAFSADRGLSAGASTALFGLFGAMTAIGLRNLHNPMI 149
Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ LA + N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 150 AFLGRQAFVLALI---NLALDIFVPGIDIWGHIGGLIAGFLLAIILG 193
>gi|242049912|ref|XP_002462700.1| hypothetical protein SORBIDRAFT_02g030450 [Sorghum bicolor]
gi|241926077|gb|EER99221.1| hypothetical protein SORBIDRAFT_02g030450 [Sorghum bicolor]
Length = 325
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S
Sbjct: 106 NKIVHQNQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165
Query: 223 AMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+S F N +VGASGA+FGL+GS ++ + I + L ++ N+AIG+
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIVALNLAIGI 225
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
L DN+ H+GG G + ++L
Sbjct: 226 LPHA-DNFAHIGGFATGFLLGFVL 248
>gi|297842567|ref|XP_002889165.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335006|gb|EFH65424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 351
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G N+L + + WR+ TS +LH+ + HL +N SL +G ME+ GP R +Y S
Sbjct: 110 GLSWNTLTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYLLSG 169
Query: 219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
I S + F N ++ + A FGL+G+ + ++ N+ G L + + N+
Sbjct: 170 IMGSLFAVLFVRNISSISSGAAFFGLIGAMLSALAKNWNLYTGKISALVIIFTIFTVNIL 229
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSD 323
IG L IDN+ ++GG + G + ++L P L+ S G ++F D
Sbjct: 230 IGFL-PFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKG-KLFED 275
>gi|118619868|ref|YP_908200.1| serine protease [Mycobacterium ulcerans Agy99]
gi|118571978|gb|ABL06729.1| rhomboid family serine protease [Mycobacterium ulcerans Agy99]
Length = 254
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 14/139 (10%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 71 VADGQLYRLVTSAFMHYGRLHLVFNMWALYVVGPPLEMWLGRLRFGGLYALSALGGSVLV 130
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 131 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 183
Query: 284 GID----NW-GHVGGLLGG 297
+ +W GHVGGL+ G
Sbjct: 184 AVGSQLISWQGHVGGLITG 202
>gi|422022178|ref|ZP_16368686.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
gi|414096671|gb|EKT58327.1| hypothetical protein OO7_06384 [Providencia sneebia DSM 19967]
Length = 287
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 31/198 (15%)
Query: 134 TNILLAVNVLVYIAQ--FAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
T+ L+ +N+++Y Q FA+ ++ LLL+GA + L G +WR S LH+N H
Sbjct: 27 TSGLVLLNIVIYFYQLHFASPLDSRENNLLLFGANVYQLSLTGDWWRYPISMLLHSNGVH 86
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSPA-------- 233
L N +L IG E+ G + L +YF S I ++ S Y N P
Sbjct: 87 LAFNSLALFVIGIECERNYGKSKLLAIYFISGIGAALFSAYWQYYEDINDPTLTDNMVYI 146
Query: 234 ---VGASGAIFGLVGSFAVFIMR-------HRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
VGASGAI GL + +++ + + I K L ++ +I+ + GL
Sbjct: 147 TVGVGASGAIMGLAAASVIYLYQAIRVPNINPTIHAQQKRLLYNILGMIVLTLISGLQ-A 205
Query: 284 GIDNWGHVGGLLGGAAIS 301
G+DN H+GG GA IS
Sbjct: 206 GVDNAAHIGGASIGALIS 223
>gi|363419988|ref|ZP_09308085.1| serine peptidase [Rhodococcus pyridinivorans AK37]
gi|359736660|gb|EHK85603.1| serine peptidase [Rhodococcus pyridinivorans AK37]
Length = 308
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL-------------LWGAKINSLIDKGQFWRLATSAFL 180
T +L+A+NVLV+ A ++ LW I + G++ R+ S FL
Sbjct: 86 TYVLIALNVLVFGITAAQSGSVMTNEQGSALFLDWALWPPIIAA---HGEYIRILGSGFL 142
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASG 238
H + HL VN ++L IG E + G RYL VY S + SA + F + AV GASG
Sbjct: 143 HFGLLHLAVNMFALWVIGRDTELVLGRARYLSVYLVSILGGSA-AVMFMETGAVTAGASG 201
Query: 239 AIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
A+FGL+G+ AV ++R R + ++ N+ I + + GI WGH
Sbjct: 202 AVFGLLGAQAVILLRLR-------RSPAPVLTIVGLNVIISITVPGISLWGH 246
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 134 TNILLAVNVLVYIAQ-------FATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T L +NV VYI + F+ D L G +++ G +W+L T+ F+H I
Sbjct: 14 TFTLFLINVAVYIVEAILSGNPFSISIDVLARLGQWNYAVLSYGWWWQLVTAMFVHVGIL 73
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGL 243
H+ N Y L +G +E I GP+R + VY S +A + ++ NS + GASGA+FG+
Sbjct: 74 HIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFLLPANSVSAGASGALFGI 133
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
VG+ + ++GG + A V+ I ++ ++ + H+GGLL G AI +
Sbjct: 134 VGTLIII----TGVVGGNMQGALINAFVLFL---INSIMPSVNVYAHLGGLLVGMAIGYY 186
Query: 304 LGPALK 309
G +K
Sbjct: 187 YGKRIK 192
>gi|147777535|emb|CAN75940.1| hypothetical protein VITISV_040961 [Vitis vinifera]
Length = 292
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
L G + N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y
Sbjct: 103 LGGLEWNKVVYGDQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLV 162
Query: 217 SAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
S S +S F + +VGASGA+FGL+G+ ++ + +I L L +I N
Sbjct: 163 SGFGGSILSSLFIQHNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAIN 222
Query: 276 MAIGLLIKGIDNWGHVGGLL 295
+A+G+L +DN+ H+GG L
Sbjct: 223 LAVGIL-PHVDNFAHIGGFL 241
>gi|148653480|ref|YP_001280573.1| rhomboid family protein [Psychrobacter sp. PRwf-1]
gi|148572564|gb|ABQ94623.1| Rhomboid family protein [Psychrobacter sp. PRwf-1]
Length = 248
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 31/222 (13%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +LL V +++ Q A+ LL WGA + WRL +SAFLH +
Sbjct: 13 TALLLISFVGLFVIQVASGVDINEPSLPSLLKWGANALPYTVGYEPWRLISSAFLHIGLM 72
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM-SYR-----FCN--SPAV--G 235
HL+ NC+++ G E G ++L ++ SA+ + + SY F N +P + G
Sbjct: 73 HLLFNCFAMYYFGQAAEVSFGSIKFLLLFLLSAVGGNLLNSYVTWWQIFYNNGAPGISAG 132
Query: 236 ASGAIFGLVGSFAVFIMRHRNILG----GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
ASG I G+ + + + +++L G +L+ LA ++ N+ G + GIDN GH+
Sbjct: 133 ASGGIMGIGMALLMVELLKKSLLKFPSHGKNPQLRSLALIMGINLMYGFAVPGIDNAGHI 192
Query: 292 GGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDW 333
GG L GA ++ +G + Y ++ I D+ P+F + W
Sbjct: 193 GGALTGAVLA--VGIMVGYRYS------ILGDK-PLFKALPW 225
>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa]
gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ ++D Q+WRL T +LH + HL+ N SL IG +E+ G + +Y S
Sbjct: 98 VQKVVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGG 157
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S +S F S +VGASGA+FGL+GS ++ + I L +I N+A+G+
Sbjct: 158 SLLSALFIQSNISVGASGALFGLLGSMLSELITNWTIYANQVAAFITLVVIIAVNLALGI 217
Query: 281 LIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSD-RAPIFHL 330
L +DN+ H+GG L G +LLG + F F FS RAP+ ++
Sbjct: 218 L-PHVDNFAHIGGFLSG----FLLG----FVFLIRPQFGWFSQRRAPLGYI 259
>gi|403514649|ref|YP_006655469.1| S54 family peptidase [Lactobacillus helveticus R0052]
gi|403080087|gb|AFR21665.1| S54 family peptidase [Lactobacillus helveticus R0052]
Length = 226
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 153 DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ GA N + G Q+WRL + FLH + HL+ N + +G ME I G R+L
Sbjct: 37 NVLMKMGAMNNYAVVAGHQWWRLFAAQFLHIGVMHLVSNAIIIYYMGQYMEPIMGHVRFL 96
Query: 212 GVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNILGGGKEELQH 267
Y + I + S F + + GAS A+FGL G+ +R H ++ +
Sbjct: 97 VTYLLAGIGGNLFSLAFSSDRGLSAGASTALFGLFGAMVAIGLRNLHNPMISFLGRQALV 156
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI 327
LA + N+A+ + + GID WGH+GGL+ G ++ +LG + T + +R+ + I
Sbjct: 157 LALI---NLALDIFVPGIDIWGHIGGLITGFLLAIILGD--RVMRTCNTKWRVLAGAVLI 211
Query: 328 FHLI 331
+++
Sbjct: 212 VYIV 215
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R++ Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKMLGTWRFIVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAK 270
I S F AVGASGAI GL+G+ A MR + L+ +
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQMRIIRQQSSKVAATRLRLIGL 486
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ M + + GH GL+ G + +L
Sbjct: 487 FVVIQMIFDAVTPQVSFIGHASGLVIGFGVGCIL 520
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GAK LI +GQ+WRL T+ FLH I HL++N +L +G +E + G R L +Y S
Sbjct: 41 GAKDTPLILQGQWWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSV 100
Query: 219 IASS--AMSYRFCNSPAVGASGAIFGLVGSFAVF-IMRHRNILGGGKEELQHLAKVIIFN 275
++ + +M + NS + GAS +FGL G+F + I+ N+L ++ + ++IFN
Sbjct: 101 VSGNLFSMVMQPVNSVSAGASTGLFGLFGAFIMLGIVFRDNLL--VRQIARQFFILVIFN 158
Query: 276 MAIGLLIKGID 286
LL+ G+D
Sbjct: 159 FGADLLMPGVD 169
>gi|310823474|ref|YP_003955832.1| hypothetical protein STAUR_6248 [Stigmatella aurantiaca DW4/3-1]
gi|309396546|gb|ADO74005.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 557
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 111 NSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSL 165
S EG D R + + W + L + A ++Q D ++ +GAK+ L
Sbjct: 30 KSPPEGPWVQDGPRGDRWKRLPWVTLGLVLVQFSVYAWTSSQGLLDVDAMVRFGAKVGPL 89
Query: 166 I-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y V +S +++
Sbjct: 90 MTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYAAVLVASGLSTMTA 149
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH---LAKVIIFNMAIGLL 281
S + +VGASG +G VG V RHR +L + L V++F + +G
Sbjct: 150 SLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSPLARRMAGEGVLPTVLVF-LWMGWT 208
Query: 282 IKGIDNWGHVGGLLGG 297
G+DN GH+GG + G
Sbjct: 209 SAGVDNAGHLGGFVAG 224
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 28/161 (17%)
Query: 115 EGTSHLDTARTNLFIGR-------QWTNILLAVNVLVYIAQFATQDKL------------ 155
EG + +ART F G+ W+ +L + V+ ++ Q T L
Sbjct: 16 EGNRRVRSARTT-FGGKVVDKPYVTWS--ILVMMVVGFVLQLGTSTPLGQALSTPLVQHF 72
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
+WG ++ G+++RL T+AFLH + HL+ N Y++ ++GP +E+ G R+L ++F
Sbjct: 73 SMWG---QGVVWHGEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLALWF 129
Query: 216 SSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHR 255
A++ S +S N P+VGASGAIF L G AVF++ R
Sbjct: 130 LGALSGSVLSLIATPNQPSVGASGAIFALFG--AVFVIGRR 168
>gi|422323890|ref|ZP_16404927.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
gi|353344683|gb|EHB88984.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
Length = 270
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 11/218 (5%)
Query: 104 NGGGTRKNSGHEGTSHLDTARTNLFIGRQW--TNILLAVNVLVY-IAQFATQDKLLLWGA 160
G G + + ++ T FI R W T L+ +NV+VY + Q + GA
Sbjct: 44 QGAGVVCPDCYRDLNGFASSPTRSFIARHWHITYTLILINVVVYGLQQIIPFRWVYNLGA 103
Query: 161 KINSLIDKGQFWRLATSAFLHA--NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
+ +G+++RL T FLH+ + HL+ N L G ++E++ G ++L VY ++
Sbjct: 104 MSGPSVHRGEYYRLITHGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLFVYMAAT 163
Query: 219 IASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ + Y F S VGASG ++GL G+F V ++ R K+ + +I ++
Sbjct: 164 LGAGFSVYIFDYYSRTVGASGGVYGLYGAFFVILLLRRQ-----KDTARLFMLLIGIDVV 218
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSD 315
L I GH GGL+ GA + L+ P +K +S+
Sbjct: 219 QSLFHPHISLAGHFGGLVSGALATLLIIPFVKKPESSN 256
>gi|116748348|ref|YP_845035.1| rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
gi|116697412|gb|ABK16600.1| Rhomboid family protein [Syntrophobacter fumaroxidans MPOB]
Length = 284
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 154 KLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
LLL GA ID+ ++W L ++++LH +I H++ N + + I P + G R L
Sbjct: 91 SLLLLGATGRIPIDQFDRWWTLLSASYLHGSILHILFNMMAFSQIAPLIVHEYGASRTLA 150
Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGG--GKEELQHLAK 270
+Y S I +SY + +GAS A+ GL+G+ A++ R R GG G+ + ++
Sbjct: 151 IYTLSGIGGYVLSYFAGTAVTLGASAAVCGLIGA-ALYYGRSR---GGQFGQLVYRQVSG 206
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+I G L GIDNW H GGLL G ++LG
Sbjct: 207 WVIGLFIFGFLFPGIDNWAHGGGLLTGILAGFVLG 241
>gi|225426828|ref|XP_002283259.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera]
gi|297742575|emb|CBI34724.3| unnamed protein product [Vitis vinifera]
Length = 328
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + N ++ Q WRL T +LHA + HL+ N SL IG +E+ G R +Y S
Sbjct: 105 GLEWNKVVYGDQGWRLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLVSG 164
Query: 219 IASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
S +S F + +VGASGA+FGL+G+ ++ + +I L L +I N+A
Sbjct: 165 FGGSILSSLFIQHNISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAINLA 224
Query: 278 IGLLIKGIDNWGHVGGLL 295
+G+L +DN+ H+GG L
Sbjct: 225 VGIL-PHVDNFAHIGGFL 241
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 14/139 (10%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ GQ +RL TSAF+H HL+ N ++L +GP +E G R+ G+Y SA+ S +
Sbjct: 106 VADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLV 165
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y N+ GASGAIFGL G A F++ R L +++ + +I N+AI +
Sbjct: 166 YLIAPLNTATAGASGAIFGLFG--ATFVVAKRLNL-----DIRWVVALIAINLAITFVAP 218
Query: 284 GID----NW-GHVGGLLGG 297
+ +W GHVGGL+ G
Sbjct: 219 AVGSQLISWQGHVGGLITG 237
>gi|418035808|ref|ZP_12674250.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
gi|354689374|gb|EHE89372.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
Length = 215
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 28 LLEMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 87
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF--AVFIMRHRNILGGGKEELQHLA 269
Y S + S ++ F N A+ GAS A+FGL G+ A F + +L + LA
Sbjct: 88 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKDNTLLSFLGRQALALA 147
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ N+ + + + +D GH+GGL+ GA ++ +LG A
Sbjct: 148 ---VINLVLDVFMPDVDILGHLGGLITGALLAVILGDA 182
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA I S + G +WRL +AFLH I HL +N + L +GP +EK+ G R+L Y +A
Sbjct: 367 GALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKMLGTWRFLVSYLMTA 426
Query: 219 IASSAMSYR------FCNSPAVGASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAK 270
I S F AVGASGAI GL+G+ A +R + L+ +
Sbjct: 427 IGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQLRIIRQQSSKVAATRLRLIGL 486
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
++ M + + GH GL+ G + +L
Sbjct: 487 FVVIQMIFDAMTPQVSFIGHASGLVIGFGVGCIL 520
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 7/157 (4%)
Query: 155 LLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL +GA N+ L+ G++WRL T FLH I H + N +SL +GP +E + G R++ +
Sbjct: 61 LLRFGALENTALLIDGEWWRLVTPVFLHIGITHFLFNSFSLYLLGPQLEWLFGRWRFIAL 120
Query: 214 YFSSAIASS-AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y + I + A Y + GASGAI+GL+G + + R + + + L ++
Sbjct: 121 YLLTGIMGNLATVYLGEVGISAGASGAIYGLLGVYVYLFLFRRGSM--DPDTGKGLLALV 178
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
N+ I +L I+ H+GGL+ G ++ GP L+
Sbjct: 179 GINLVISILTPTINLTAHLGGLVAGFLLA---GPLLR 212
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++ G+E + + ++ F + + +
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELI--GQEHSKMILTLLAFAVLMSFI 168
Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
I+ H+ GL GG +S+L
Sbjct: 169 NSNINMMAHLFGLCGGFLLSFL 190
>gi|14591283|ref|NP_143361.1| hypothetical protein PH1497 [Pyrococcus horikoshii OT3]
gi|3257922|dbj|BAA30605.1| 197aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 197
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 137 LLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLN 195
L+ + LV+I + D+ + A+IN L+ GQ+WRL T+ FLH H +N + L
Sbjct: 16 LIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLHMGFIHFGLNIFWLF 75
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFGLVGSFAVFIM 252
+G +E I G RR+L V+F+SA+ + +S P V GASG +FG+VG+
Sbjct: 76 YLGIDLEGIVGTRRFLTVFFASALVGNLLS-LITLPPYVASGGASGGLFGVVGALL---- 130
Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
I G + +Q + I + G++ H GGL+ G + G L+
Sbjct: 131 ---GIEGVLRRNIQKALINALLLFLINSIFPGVNAVAHFGGLVTGLIFGYYYGKWLR 184
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 187 FILTGLLWGLF-GGIDNAAHIGGLVSGT 213
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++ G+E + + ++ F + + +
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVYLFMVLFRKELI--GQEHSKMILTLLAFAVLMSFI 168
Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
I+ H+ GL GG +S+L
Sbjct: 169 NSNINMMAHLFGLCGGFLLSFL 190
>gi|116514421|ref|YP_813327.1| membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093736|gb|ABJ58889.1| Membrane-associated serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 223
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 36 LLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 95
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF--AVFIMRHRNILGGGKEELQHLA 269
Y S + S ++ F N A+ GAS A+FGL G A F + +L + LA
Sbjct: 96 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGPMTCAGFKDKDNTLLSFLGRQALALA 155
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ N+ + + + +D GH+GGL+ GA ++ +LG A
Sbjct: 156 ---VINLVLDVFMPDVDILGHLGGLITGALLAVILGDA 190
>gi|295702423|ref|YP_003595498.1| S54 (rhomboid) family peptidase [Bacillus megaterium DSM 319]
gi|294800082|gb|ADF37148.1| peptidase, S54 (rhomboid) family protein [Bacillus megaterium DSM
319]
Length = 200
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+NSLI +G +WRL T FLH + +HL+ N +SL +GP E+I ++L Y +
Sbjct: 49 VNSLISQGDYWRLFTPIFLHLSFSHLLFNSFSLFLLGPGAERILSSYKFLLFYLTCGFLG 108
Query: 222 SAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
+ +++ +S VGASGAIFGL+G + +++ +++L +++
Sbjct: 109 NIVTFLTQSSFYSHVGASGAIFGLLGFYLYLVIKQKHMLSQSNQQI 154
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 21/174 (12%)
Query: 134 TNILLAVNVLVYIAQFAT---QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T +L+AVNV ++ Q + Q L+L+ + + G+++RL +SAFLH H++ N
Sbjct: 72 TYVLIAVNVAMFALQMMSSELQRGLVLF----SPAVADGEWYRLISSAFLHYGPTHILFN 127
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFA 248
++L +GP +E G R+ +Y SA+ S + Y + GASGAIFGL G A
Sbjct: 128 MWALYVVGPPLEAALGRLRFASLYLVSALGGSVLVYLLSALGAQTAGASGAIFGLFG--A 185
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID----NW-GHVGGLLGG 297
F++ R L +++ + +I N+A +I I +W GH+GGL+ G
Sbjct: 186 TFVVGKRLNL-----DVRWVVGLIALNLAFTFVIPLISSQNISWQGHIGGLVTG 234
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 187 FILTGLLWGLF-GGIDNAAHIGGLVSGT 213
>gi|398307565|ref|ZP_10511151.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
vallismortis DV1-F-3]
Length = 199
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 Y--RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y + VGASGAIFGL G + ++ + ++ G+E + + ++ F + + L+
Sbjct: 113 YVAEPLDYVHVGASGAIFGLFGVYLYMVVFRKELI--GREHSKMILTLLAFAVLMSLINS 170
Query: 284 GIDNWGHVGGLLGGAAISWL 303
I+ H+ GL GG +S+L
Sbjct: 171 NINIMAHLFGLCGGFLLSFL 190
>gi|417009713|ref|ZP_11945885.1| hypothetical protein AAULH_09078 [Lactobacillus helveticus MTCC
5463]
gi|328464817|gb|EGF36130.1| hypothetical protein AAULH_09078 [Lactobacillus helveticus MTCC
5463]
Length = 226
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 153 DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ GA N + G Q+WRL + FLH + HL+ N + +G ME I G R+L
Sbjct: 37 NVLMKMGAMNNYAVVAGHQWWRLFAAQFLHIGVMHLVSNAIIIYYMGQYMEPIMGHVRFL 96
Query: 212 GVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
Y + I + S F + + GAS A+FGL G A+ + RN+ L A
Sbjct: 97 VTYLLAGIGGNLFSLAFSSDRGLSAGASTALFGLFG--AMVAIGLRNLYNPMISFLGRQA 154
Query: 270 KVI-IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIF 328
V+ + N+A+ + + GID WGH+GGL+ G ++ +LG + T + +R+ + I
Sbjct: 155 LVLALINLALDIFVPGIDIWGHIGGLITGFLLAIILGD--RVMRTYNPKWRVLAGAVLIV 212
Query: 329 HLI 331
+++
Sbjct: 213 YIV 215
>gi|418029655|ref|ZP_12668189.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
gi|354689534|gb|EHE89520.1| Serine endopeptidase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
Length = 209
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 155 LLLWGAKIN-SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA N +++ +GQ+WRL T+ FLH I H+ N + IG E + G R+L +
Sbjct: 22 LLKMGAMFNPAVVMEGQWWRLFTAQFLHIGIMHIASNAIMIYYIGQYAEPVFGHWRFLLI 81
Query: 214 YFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSF--AVFIMRHRNILGGGKEELQHLA 269
Y S + S ++ F N A+ GAS A+FGL G+ A F + +L + LA
Sbjct: 82 YLLSGVGGSLLTLAFGNDQAISAGASTALFGLFGAMTCAGFKDKDNTLLSFLGRQALALA 141
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPA 307
+ N+ + + + +D GH+GGL+ GA ++ +LG A
Sbjct: 142 ---VINLVLDVFMPDVDILGHLGGLITGALLAVILGDA 176
>gi|334135017|ref|ZP_08508518.1| peptidase, S54 family [Paenibacillus sp. HGF7]
gi|333607519|gb|EGL18832.1| peptidase, S54 family [Paenibacillus sp. HGF7]
Length = 204
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 14/193 (7%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
T++L+ ++V++++ + L+ +GA ++ ++WR T+ FLH ++HL+
Sbjct: 19 TSLLVLIHVVLFVLMEVSGSSTSTRTLIEYGALFSAPGFVPEWWRFFTAMFLHIGLSHLL 78
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGAIFGLVGS 246
N ++L P +E++ G RY Y +S SA SY A GASGAI+G+ +
Sbjct: 79 FNSFALVIFAPPLERLLGSVRYAVFYLASGALGSAFSYWLHTDAYVAAGASGAIYGIYAA 138
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ + R +L ++ Q + +++ + +++ +D + H+GG L G +
Sbjct: 139 YLYLALFRRQLL--DQQSRQTVIIILVSGLLFSVIVPNVDLYTHLGGFLAGFILF----- 191
Query: 307 ALKYEFTSDDGFR 319
AL EF G R
Sbjct: 192 ALFVEFIKRSGRR 204
>gi|227889556|ref|ZP_04007361.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
gi|227849858|gb|EEJ59944.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
Length = 228
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 9/191 (4%)
Query: 125 TNLFIGRQWTNILLAVNVLVYIAQF----ATQDKLLL-WGAKINSLID-KGQFWRLATSA 178
TN F TN +L V +V+I + +T +L+ GA N L+ + Q+WRL T+
Sbjct: 6 TNRFSSTFVTNAILIVLFIVFIIETMMGGSTNINILVRLGAMNNQLVTVEHQWWRLFTAQ 65
Query: 179 FLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GA 236
FLH H+ N + +G ME + G R+L VY S I + +SY + + V GA
Sbjct: 66 FLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYGSDSVVSAGA 125
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
S A+FGL G + +R I Q L II N+A+ L + I+ GH+GGL+
Sbjct: 126 STALFGLFGVVIALYLANRAIPAINYLGKQALTLAII-NLALDLFVSHINILGHLGGLIS 184
Query: 297 GAAISWLLGPA 307
G + + G A
Sbjct: 185 GFLLGIIFGSA 195
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 137 LLAVNVLVYIAQFA-----TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
L+ +N++V++ F + +L+ G ++ + G+++RL TS FLH N H+++N
Sbjct: 162 LITINIIVWLFMFLVLNAFSDTRLIDLGGLVHFNVVHGEWYRLVTSMFLHFNFEHILMNM 221
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAV 249
SL G +E I G + LG+Y S I + +S NS +VGASGAIFGL+GS FA+
Sbjct: 222 LSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVSLAIDNSSISVGASGAIFGLIGSLFAM 281
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
+ + ++ L L V++ + L I ++ + H
Sbjct: 282 MYISKQ----YDRKSLFQLIGVLLILTFVSLFITNVNIYAH 318
>gi|357134029|ref|XP_003568622.1| PREDICTED: uncharacterized protein LOC100834911 [Brachypodium
distachyon]
Length = 417
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 155 LLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGV 213
LL GA S + K + WRL T +LHA + H++ N SL IG +EK G R +
Sbjct: 139 LLKMGALETSKVAKDHEGWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLRIGTL 198
Query: 214 YFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
Y S + S +S F ++ +VGASGA+FGL+GS ++ + I L L +I
Sbjct: 199 YVISGVGGSLLSALFMVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTLVMII 258
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
N+A+G+L +DN+ H+GG + G + ++L
Sbjct: 259 AINLAVGIL-PHVDNFAHIGGFISGFFLGFVL 289
>gi|352518163|ref|YP_004887480.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
gi|348602270|dbj|BAK95316.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
Length = 228
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 131 RQWTN------ILLAVNVLVYIAQFATQDKLLLWGAKINS-LIDKGQFWRLATSAFLHAN 183
R+W N L + +LV+I + + GA ++ Q+WR T F+H
Sbjct: 7 RRWLNQPIITYFFLGIQILVFIISYLFPGLIESQGAMFGPFVVYYSQYWRFITPIFIHYG 66
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAI 240
+ H VN L +G +E + G RY +Y S A + +S+ F NSP V G+S A+
Sbjct: 67 LMHFAVNSIVLYFMGQRLEAMYGHMRYFFIYLLSGAAGNLLSFAF-NSPGVQSAGSSTAL 125
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI----KGIDNWGHV 291
FGL G+F V + ++N +Q L + + I LL + ID WGH+
Sbjct: 126 FGLFGAFVVLGVHYKN-----NYAIQVLVRQFTLFIGISLLFSLFDRSIDIWGHI 175
>gi|255282943|ref|ZP_05347498.1| putative small hydrophobic molecule transporter protein [Bryantella
formatexigens DSM 14469]
gi|255266482|gb|EET59687.1| peptidase, S54 family [Marvinbryantia formatexigens DSM 14469]
Length = 205
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 100/194 (51%), Gaps = 7/194 (3%)
Query: 115 EGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLI-DKGQFWR 173
EG +++ + RT + + NI + + + + +++L +GA + KG+++R
Sbjct: 4 EGINYIRS-RTKMNLLMVLINIAVFLIITIMGGDTLDAEQMLSYGAMYPPYVTQKGEYYR 62
Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA 233
L T FLH HL N L G +E+ GP RYL +Y + +A + +S+
Sbjct: 63 LFTCMFLHFGWQHLFYNMLLLWFAGDMLEERSGPVRYLVIYLAGGVAGNVLSFLTGMERQ 122
Query: 234 V---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
V GASGA+F ++G+ ++++R + G + L + + ++A G + G+D+ H
Sbjct: 123 VVSAGASGAVFAVIGALVWLVVKNRGKVEGIDN--RGLCMMAVLSLAQGFMDAGVDHMAH 180
Query: 291 VGGLLGGAAISWLL 304
+GG +GG ++ +L
Sbjct: 181 LGGFIGGFLLAAVL 194
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
G + + + G++WRL T+ FLH +AH+ +N SL +G +E G RYL VYF +
Sbjct: 24 GDLVRAYVADGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYLMVYFIAL 83
Query: 219 IASSA--MSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
SA M + N + GASGAI+GL+G+ V +++ K + +I+ N+
Sbjct: 84 FGGSAAVMLFEAANVRSAGASGAIYGLMGAVLVVVLKA-------KVSPTGVITIIVINL 136
Query: 277 AIGLLIKGIDNWGHVGGLLGG----AAISWLLGPALKYEFTSDD 316
+ + GI HVGGL+ G AAI +L G L E ++
Sbjct: 137 VFSVTMPGISLAAHVGGLVFGAAATAAIIYLPGVVLSRESSTQQ 180
>gi|413925083|gb|AFW65015.1| hypothetical protein ZEAMMB73_264327 [Zea mays]
Length = 322
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S +
Sbjct: 105 VVHEHQGWRLISCIWLHAGLVHLVVNMLSLLFIGIRLEQQFGFVRIGVIYLISGFGGSVL 164
Query: 225 SYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S F N +VGASGA+FGL+GS ++ + I + L +I+ N+AIG+L
Sbjct: 165 SALFLHSNYVSVGASGALFGLLGSMLSELIINWTIYSNKAAAIITLLFIIVINLAIGILP 224
Query: 283 KGIDNWGHVGGLLGGAAISWLL 304
DN+ H+GG G I ++L
Sbjct: 225 HA-DNFAHIGGFASGFLIGFVL 245
>gi|161507831|ref|YP_001577795.1| hypothetical protein lhv_1567 [Lactobacillus helveticus DPC 4571]
gi|160348820|gb|ABX27494.1| putative membrane protein [Lactobacillus helveticus DPC 4571]
Length = 226
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 153 DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ GA N + G Q+WRL + FLH + HL+ N + +G ME I G R+L
Sbjct: 37 NVLMKMGAMNNYAVVAGHQWWRLFAAQFLHIGVMHLVSNAIIIYYMGQYMEPIMGHVRFL 96
Query: 212 GVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNILGGGKEELQH 267
Y + I + S F + + GAS A+FGL G+ +R H ++ +
Sbjct: 97 VTYLLAGIGGNLFSLAFSSDRGLSAGASTALFGLFGAMVAIGLRNLHNPMISFLGRQALV 156
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI 327
LA + N+A+ + + GID WGH+GGL+ G ++ +LG + T + +R+ + I
Sbjct: 157 LALI---NLALDIFVPGIDIWGHIGGLITGFLLAIILGD--RVMRTYNPKWRVLAGAVLI 211
Query: 328 FHLI 331
+++
Sbjct: 212 VYIV 215
>gi|387902202|ref|YP_006332541.1| rhomboid family protein [Burkholderia sp. KJ006]
gi|387577094|gb|AFJ85810.1| Rhomboid family protein [Burkholderia sp. KJ006]
Length = 658
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 33/207 (15%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W I+LAV N+ +++ A + + LL WGA GQ WRL TSAFLH
Sbjct: 23 RPWLTIVLAVVNIAIFVLMWRAASYGDLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHG 82
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFG 242
+ H+ +N Y L +G +E++ G R+ Y SA+ S +S + VG S FG
Sbjct: 83 SWMHVALNMYMLIVLGTVLERVGGTLRFGVAYLLSALGGSLLSALWHGYHEVGGSSFAFG 142
Query: 243 LV----------------------GSFAVFIMRHRNILGGGKE---ELQHLAKVIIFNMA 277
+V G+ A ++R R G + L +A+VI+ N+
Sbjct: 143 VVLQTSGIQPVVSVGASGALMGLAGAAAALVLRRRREAGADAQVPINLAAVAQVIVLNLG 202
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL 304
G +I GID H+GG++ G WL+
Sbjct: 203 SGFVISGIDQAAHLGGVIVGFVAGWLM 229
>gi|325264281|ref|ZP_08131012.1| putative small hydrophobic molecule transporter protein
[Clostridium sp. D5]
gi|324030352|gb|EGB91636.1| putative small hydrophobic molecule transporter protein
[Clostridium sp. D5]
Length = 223
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 134 TNILLAVNVLVYIAQF---ATQDKLLLW--GAKINSLIDKG-QFWRLATSAFLHANIAHL 187
T L+ +N+ V++ AT+D L + GA + +G Q++R+ TS FLH I HL
Sbjct: 32 TTALIVINIGVFLVLSVLGATEDSLFMLEHGAMYEPYVVEGHQYYRMFTSLFLHFGIEHL 91
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFG 242
+ N L ++G +E G ++L +YF S + + +S S + GASGAIFG
Sbjct: 92 LNNMVLLGALGWNLELETGRIKFLIIYFISGLGGNMLSLWMNMSTDKMVVSAGASGAIFG 151
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISW 302
L+G+ ++++ + G+ + L +++ ++ G G+DN H+GGL+ G ++
Sbjct: 152 LMGALLCVVLKNHGRV--GRLTNRGLLFMVVLSLYFGFTSSGVDNAAHIGGLVCGFVMAA 209
Query: 303 LL 304
+L
Sbjct: 210 VL 211
>gi|223984557|ref|ZP_03634688.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
gi|223963485|gb|EEF67866.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
Length = 424
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
++WR TSAF+H ++ HL++N +L ++G EK+ G R YL + F S + SA +
Sbjct: 216 EYWRWLTSAFVHVDLWHLLMNMMALYNMGMLCEKLMGVRNYLIILFGSILFGSAFVFLGS 275
Query: 230 -NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
N A+G SG ++GL+ +F V+ ++ R IL + Q L +++ N+ I L+ G+
Sbjct: 276 GNVVAMGISGGLYGLLAAFLVYGIQTR-ILFQPQLRTQFLL-ILMINLMISLM-PGVSLA 332
Query: 289 GHVGGLLGGAAISWLL 304
H GG +GG IS +L
Sbjct: 333 AHFGGFVGGLLISVVL 348
>gi|374310995|ref|YP_005057425.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358753005|gb|AEU36395.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 284
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 104/250 (41%), Gaps = 62/250 (24%)
Query: 108 TRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQ--------------- 152
TR+ + +S LD T L IG +N+LV+ F
Sbjct: 11 TRRRNDDRHSSLLDYPATYLLIG---------INLLVFAIMFRYSPALPLMRQHISWQIL 61
Query: 153 ------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206
+ LL +G + + GQ+WRL TS F+H I HL++N + L ++G E + G
Sbjct: 62 TASFDVNTLLRFGGSDAAYVMNGQWWRLITSTFVHVTILHLVLNMWCLWNLGLFGEPLLG 121
Query: 207 PRRYLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
+ VY + A +S +S GASGAIFGL G V + + L
Sbjct: 122 RPGLIAVYLLTGTAGMMLSLTLSVAQQQDSLVAGASGAIFGLAGILIVLLSNRK--LAAP 179
Query: 262 KEELQHLAKVIIF----NMAIGLLIKG---------------------IDNWGHVGGLLG 296
+EL+ L + +I+ N+ IGLL + IDN H+GG L
Sbjct: 180 WKELRSLRRSVIWFAVLNLVIGLLPQALPAFSDGQLARLHLSPDSLPHIDNSAHLGGFLS 239
Query: 297 GAAISWLLGP 306
G A+ + L P
Sbjct: 240 GLALGFPLFP 249
>gi|115372709|ref|ZP_01460015.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
gi|115370190|gb|EAU69119.1| peptidase, S54 (rhomboid) family, putative [Stigmatella aurantiaca
DW4/3-1]
Length = 520
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 153 DKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
D ++ +GAK+ L+ + G+ WRL T+ FLH + AH+ +N L ++G +E Y
Sbjct: 40 DAMVRFGAKVGPLMTEAGEPWRLVTANFLHRDGAHVGLNMLVLLAVGWVLEGTWRRWDYA 99
Query: 212 GVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH---L 268
V +S +++ S + +VGASG +G VG V RHR +L + L
Sbjct: 100 AVLVASGLSTMTASLLWAEEVSVGASGMAYGCVGGLIVLGRRHRAVLSPLARRMAGEGVL 159
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
V++F + +G G+DN GH+GG + G
Sbjct: 160 PTVLVF-LWMGWTSAGVDNAGHLGGFVAG 187
>gi|134295675|ref|YP_001119410.1| rhomboid family protein [Burkholderia vietnamiensis G4]
gi|134138832|gb|ABO54575.1| Rhomboid family protein [Burkholderia vietnamiensis G4]
Length = 643
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 33/207 (15%)
Query: 131 RQWTNILLAV-NVLVYI-----AQFA--TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
R W I+LAV N+ +++ A + + LL WGA GQ WRL TSAFLH
Sbjct: 8 RPWLTIVLAVVNIAIFVLMWRAASYGDLSNPLLLDWGANFAPYTLTGQPWRLLTSAFLHG 67
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFG 242
+ H+ +N Y L +G +E++ G R+ Y SA+ S +S + VG S FG
Sbjct: 68 SWMHVALNMYMLIVLGTVLERVGGTLRFGVAYLLSALGGSLLSALWHGYHEVGGSSFAFG 127
Query: 243 LV----------------------GSFAVFIMRHRNILGGGKE---ELQHLAKVIIFNMA 277
+V G+ A ++R R G + L +A+VI+ N+
Sbjct: 128 VVLQTSGIQPVVSVGASGALMGLAGAAAALVLRRRREAGADAQVPINLAAVAQVIVLNLG 187
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLL 304
G +I GID H+GG++ G WL+
Sbjct: 188 SGFVISGIDQAAHLGGVIVGFVAGWLM 214
>gi|291540429|emb|CBL13540.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Roseburia intestinalis XB6B4]
Length = 348
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 130 GRQWTNILLA-VNVLVYIAQFA---TQDKLLLW--GAKINSLID-KGQFWRLATSAFLHA 182
G +T I +A +NV+VY+ TQD + G I Q+WR+ T+ F+H
Sbjct: 156 GLSYTTIAIAAINVIVYLILEILGDTQDPFYIASHGGMYPEFIQINHQWWRIFTAMFIHF 215
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GAS 237
+ HL+ N +G +E+ G + +Y S I +SY + AV GAS
Sbjct: 216 GLPHLVNNMVIFCCVGSRLERAAGHFKMFVIYMLSGIGGGLLSYFMMLYSGDYAVSAGAS 275
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GA+FG +G ++RHR G ++ + + + ++ G GIDNW HVGG+L G
Sbjct: 276 GAVFGTIGGLIWVVIRHRGRFKG--LTVKGMILMAVLSLYYGFSTIGIDNWCHVGGILTG 333
Query: 298 AAISWLL 304
++ +L
Sbjct: 334 FLVAMIL 340
>gi|339441829|ref|YP_004707834.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
gi|338901230|dbj|BAK46732.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
Length = 218
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
+++ D G+++RL TS+FLH I+HL+ N L +G +EK G +Y Y + + SS
Sbjct: 59 DAVFDSGEWYRLLTSSFLHFGISHLVNNMVMLFCLGSYLEKAFGRIKYAVFYAAVCVFSS 118
Query: 223 AMSYRFC---NSPAV--GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
S + +SPAV GASGAIFG++G+ I+R+ +L+ ++ ++
Sbjct: 119 LASSWWMLQQDSPAVSGGASGAIFGIIGALLWIILRNHGRF--RDMDLRRFLIMLALSLY 176
Query: 278 IGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
G +DN H+GGL+ G + L+ P
Sbjct: 177 YGFTTADVDNAAHIGGLIFGFLLGILMAP 205
>gi|83646149|ref|YP_434584.1| hypothetical protein HCH_03410 [Hahella chejuensis KCTC 2396]
gi|83634192|gb|ABC30159.1| uncharacterized membrane protein [Hahella chejuensis KCTC 2396]
Length = 294
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
+L WGA + GQ+WRL + FLH I HL +N ++L G +E++ G R+L ++
Sbjct: 47 MLQWGANFSPATQNGQWWRLDAAIFLHFGIVHLTLNAWALWDGGQWVERMYGQMRFLIIF 106
Query: 215 FSSAIASS--AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+S + + +++ + + GASG IFG+ G+ ++ +++ + + I
Sbjct: 107 ITSGLIGNLFSLALHVVSVVSAGASGGIFGVYGALLSYLWLNKSRVPLTEFRWLFFGAAI 166
Query: 273 --IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ + +G LI G+DN H GG + G + LL P
Sbjct: 167 FSLLTIFLGFLIDGVDNAAHGGGFITGLILGALLIP 202
>gi|340358738|ref|ZP_08681246.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885875|gb|EGQ75566.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 280
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 19/177 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
T IL+ V VY+ Q Q + + I + WR T+AFLHA++ HL N ++
Sbjct: 77 TKILVVACVAVYLIQLTHQPLENRFAFVPAAAISEP--WRFVTTAFLHASLWHLAFNMWA 134
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA---------VGASGAIFGLV 244
L +G +E + G R+ +Y SA+ S M Y + SP VGASGA+FGL
Sbjct: 135 LWVLGSALEPVLGRWRFAALYVLSAVGGSTMIY-WLASPVTMSSWWGLTVGASGAVFGLF 193
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
A+FI++HR + + ++ N+AI + + I GH+GGL GA I+
Sbjct: 194 A--ALFIIQHRF-----GRDTSGILGLLAVNLAISFMGEYISWQGHLGGLATGALIA 243
>gi|421593641|ref|ZP_16038177.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
gi|403700367|gb|EJZ17554.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
Length = 439
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
L+ AR +F T LLAV + VY + A + +L G +++
Sbjct: 57 LNNARYPVF-----TYALLAVLIAVYAGELAFGVEPSEAGSPTIRTLWMLGGTFRQNIVG 111
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
G++WRL T+ F+H +I HL +NC +L G E++ G R + ++F+SA+ S S
Sbjct: 112 DGEWWRLFTAPFMHGSIIHLALNCVALWVAGRLFERLIGWRWFAAIFFASALGGSIASVW 171
Query: 228 F--CNSPAVGASGAIFGLVGSFAV--FIMRHRNI---LGGGKEELQHLAKVIIFNMAIGL 280
N+ VGASG I GL + V F R I L G ++ + + IFN A
Sbjct: 172 INDANTVGVGASGGIVGLFAAVIVASFHFRPTPIASSLQTGAIQILIPSLLPIFNSARDG 231
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
+ ID GH GG + GAA+S LL
Sbjct: 232 --QTIDYAGHFGGAVTGAALSLLL 253
>gi|358061502|ref|ZP_09148156.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
gi|356700261|gb|EHI61767.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
Length = 206
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 20/195 (10%)
Query: 133 WTNILL-AVNVLVYI---AQFATQDKLLLW--GAKINSLI-DKGQFWRLATSAFLHANIA 185
+ NILL A+NVL +I ++++ L + GA L+ + G+++RL TS F+H I
Sbjct: 11 YINILLIAINVLYFIFLEMTGSSENSLFMIQHGAMYEPLVTENGEYYRLLTSIFMHFGIN 70
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNSPAV---GASGAI 240
H++ N L +G ME+ G +YL Y + + ++M+ N V GASGAI
Sbjct: 71 HIVNNMLMLFILGDNMERALGHIKYLFFYLICGVGANIASMTVNVMNKELVVSAGASGAI 130
Query: 241 FGLVGSFAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
FG++G + + G E+L + L VI+ ++ G G+DN H+ GLL G
Sbjct: 131 FGVIGGLLYAVAVNH----GRLEDLSTRQLVVVILCSLYFGFTSGGVDNVAHIAGLLIGI 186
Query: 299 AISWLL--GPALKYE 311
++ LL P YE
Sbjct: 187 VMAMLLYRKPKPVYE 201
>gi|229491196|ref|ZP_04385024.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229321934|gb|EEN87727.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length = 240
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYR--FCNSPAV----GA 236
HL VN Y+L +G E + G RY+G+Y S + SA M+++ F + A+ GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 131 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 175
>gi|453068740|ref|ZP_21972014.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
gi|452765301|gb|EME23561.1| hypothetical protein G418_08893 [Rhodococcus qingshengii BKS 20-40]
Length = 240
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKINS-------LIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I + L+ G ++RL S FLH I
Sbjct: 11 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 70
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYR--FCNSPAV----GA 236
HL VN Y+L +G E + G RY+G+Y S + SA M+++ F + A+ GA
Sbjct: 71 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 130
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 131 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 175
>gi|225572886|ref|ZP_03781641.1| hypothetical protein RUMHYD_01077 [Blautia hydrogenotrophica DSM
10507]
gi|225039751|gb|EEG49997.1| peptidase, S54 family [Blautia hydrogenotrophica DSM 10507]
Length = 222
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 137 LLAVNVLVYI-----AQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVN 190
++ +NV+V++ + +L GA +LI + +++RL TS FLH +AHL N
Sbjct: 32 MIVLNVVVFLIVDLSGNSGNTEHMLRCGAANAALIVEAKEYYRLFTSMFLHFGMAHLANN 91
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVG 245
L IG +E+ G +YL +Y S + + +S S + GASGAIFG++G
Sbjct: 92 MLVLYVIGDNLERAVGKVKYLLIYLFSGLGGNILSCYLEYQEGALSVSAGASGAIFGVMG 151
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVII--FNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ ++ + G E+L VI+ F++ G G+DN HVGGL+ G ++ L
Sbjct: 152 AMLYVLLANH----GRLEDLTARQIVIMAGFSLYFGFTSSGVDNAAHVGGLICGFLVAML 207
Query: 304 L 304
L
Sbjct: 208 L 208
>gi|356518507|ref|XP_003527920.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 373
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 151 TQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR 209
+Q KL GA SL+ + Q WRL T FLHA + HL++N S+ +G ++E GP R
Sbjct: 89 SQSKLDEMGALRRSLLTEHHQTWRLFTFPFLHAGVFHLLLNLSSVIYVGVSLEHHFGPIR 148
Query: 210 YLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHL 268
+Y SA S ++ F N PAVGASGA++GL+G+ ++ + + L
Sbjct: 149 IGIIYALSAFVGSLVASLFLQNMPAVGASGALYGLLGTLLSELVWNWKFHSNKISAIASL 208
Query: 269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS--WLLGPALK 309
V + N +G L +DN+ +GG + G + +LL P L+
Sbjct: 209 VFVFVCNFVLGFL-PYVDNFASIGGFISGFLLGSVFLLSPQLQ 250
>gi|291561790|emb|CBL40590.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[butyrate-producing bacterium SS3/4]
Length = 206
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 131 RQWTN-ILLAVNVLVYIAQFAT---QDKLLLW--GAKIN-SLIDKGQFWRLATSAFLHAN 183
+ + N +L+A+NVL ++ T +D ++ GA ++++ G+++RL T+ F+H
Sbjct: 8 KAYVNGLLIALNVLFFLYLEITDSSEDAYFMYTKGAMFAPAVLEDGEYYRLLTAMFMHFG 67
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS--AMSYRFCNSPAV--GASGA 239
I H+M N L IG +E+ G +YL Y I S+ +M ++ V GASGA
Sbjct: 68 IRHIMNNMLVLFVIGDNLERALGHVKYLIFYLLCGIGSNWVSMMAHTADTMTVSAGASGA 127
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
IFG+VG + +R G E+L + L +I F++ +G G+DN H+ GL+ G
Sbjct: 128 IFGVVGGLLYVVTANR----GQLEDLNTRQLVIMIFFSLYLGYTSTGVDNIAHLSGLVIG 183
Query: 298 AAISWLL 304
++ +L
Sbjct: 184 FVLAIIL 190
>gi|224104429|ref|XP_002313433.1| predicted protein [Populus trichocarpa]
gi|222849841|gb|EEE87388.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+N ++ K Q WRL + +LHA + H++ N SL IG +E+ G R VY S
Sbjct: 68 DVNRVVHKHQSWRLISCIWLHAGVFHVLANMLSLLFIGIRLEQEFGFLRVGLVYVISGFG 127
Query: 221 SSAMSYRFCNS-PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F + +VGASGA+FGL+G ++ + I L L +I N+A+G
Sbjct: 128 GSLLSALFIQTGISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLLCIIAVNLAVG 187
Query: 280 LLIKGIDNWGHVGGLLGG 297
LL +DN+ H+GG L G
Sbjct: 188 LL-PHVDNFAHIGGFLSG 204
>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa]
gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N ++ Q WRL T +LHA + H++ N SL IG +E+ G R +Y S S
Sbjct: 102 NKVVHGHQGWRLITCMWLHAGVVHVLANMLSLIFIGIRLEQQFGFVRVGIIYLVSGFGGS 161
Query: 223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
+S F + +VGASGA+FGL+G+ ++ + I L L +I N+A+G+L
Sbjct: 162 ILSSLFIQQNISVGASGALFGLLGAMLSELLTNWTIYSNKIAALLTLVVIIAINLAVGIL 221
Query: 282 IKGIDNWGHVGGLLGG 297
+DN+ H+GG + G
Sbjct: 222 -PHVDNFAHIGGFMSG 236
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T FLHA HL+ N S+ P +E++ G R+L VY S + + +
Sbjct: 53 VANGEWWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + ++ + ++ G++ + + ++ F + + +
Sbjct: 113 Y--FTEPLDYLHVGASGAIFGLFGVYLFMVLFRKELI--GQDNSKMILTLLAFAVLMSFI 168
Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
I+ H+ GL GG +S+L
Sbjct: 169 NSNINMMAHLFGLCGGFLLSFL 190
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 33/265 (12%)
Query: 47 HHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG 106
HP A LL + C P D E A F V+ T A
Sbjct: 23 RHPDRATGLLCAR-------CERPACPDCLREAAVGFQCVDCV--TEGART--------- 64
Query: 107 GTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAK 161
TR+ EG +H T R L + L + Y+ T Q + GA
Sbjct: 65 -TRQARTVEGATHASTGRRLLVVPVLIVVNLALFALTAYLGGGVTDRDVFQSDVTQEGAL 123
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+ + G++WRL TS FLH + H+ +N SL +G +E + G R+L VY S +
Sbjct: 124 VPYFVALGEWWRLVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLAVYLLSLLGG 183
Query: 222 SAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
SA Y F S GASGAI+GL+GS V ++R + + +I N+ +
Sbjct: 184 SASVYLFEEVVSLTAGASGAIYGLMGSLLVVLLRR-------RLNATPVLAIIAINVFLS 236
Query: 280 LLIKGIDNWGHVGGLLGGAAISWLL 304
+ I GH+GG+ GAA++ L
Sbjct: 237 FSLPNISILGHLGGIAVGAAVTAAL 261
>gi|436838188|ref|YP_007323404.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
gi|384069601|emb|CCH02811.1| Rhomboid protease gluP [Fibrella aestuarina BUZ 2]
Length = 251
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQF--------ATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +N+LV++ T L+ WGA L GQ WRL T+ FLH +
Sbjct: 30 TPILMGINILVFVGMVLTGVNIMSPTGQDLVNWGANYTPLTYGGQPWRLLTACFLHIGLI 89
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLV 244
H++VN SL +G +E + G R+ Y + + S +S + + + GASGAIFG+
Sbjct: 90 HIVVNMMSLRVLGSQIEPLLGTSRFAVGYVVTGLTGSLVSLWWHDMVVSAGASGAIFGIE 149
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++ + K L++ V+ N+ IG I G DN H
Sbjct: 150 GMLVGLLLTNLFDAAARKALLKNSLSVVGINLLIGAGI-GADNAAH 194
>gi|430756886|ref|YP_007210796.1| hypothetical protein A7A1_1394 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021406|gb|AGA22012.1| Hypothetical protein YdcA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 199
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVMLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ +F++ RN L G+E + + ++ F + + + I+ H+ GL GG +S+L
Sbjct: 136 Y-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFINSNINMMAHLFGLCGGFLLSFL 190
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL T+ F+HA HL N + L +E I G R+L
Sbjct: 82 SLLEWGANRRIETL--AGQWWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFL 139
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 140 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 199
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 200 FILTGLLWGLF-GGIDNAAHIGGLVSGT 226
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 37/204 (18%)
Query: 134 TNILLAVNVLVYIAQFATQ-------------------DKLLLWGAKINSL--------- 165
T L+A+NVL+ + A+ L WGA +
Sbjct: 40 TKALIAINVLIMLVSIASDRGGDAAAGGTGFGGLMGGSTPLTEWGAVLGRAMFLDGSIGG 99
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ +GQ++RL T+ FLH I HL++N ++L +G ++E + GP R+ +YF + +
Sbjct: 100 VAEGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAV 159
Query: 226 YRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F N + GAS AIFGL A+F++ R LG + + +++ N+ +
Sbjct: 160 YVFSPPNQMSAGASTAIFGLFA--AIFVIMRR--LG---RDTSAILPILVINLIFTFTVP 212
Query: 284 GIDNWGHVGGLLGGAAISWLLGPA 307
I GH+GGL+ G ++ +L A
Sbjct: 213 QISIAGHLGGLVFGGLMALVLAYA 236
>gi|50845222|gb|AAT84608.1| rhomboid protease 1 [Toxoplasma gondii]
Length = 249
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
W ++ V + + + L+ +GA LI +GQ WRL FLHAN H+ N
Sbjct: 26 DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 85
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSPAVGASGAIFGLVG---- 245
+ +G T+E+ G ++ G+YF+SAI + +S FCNS VGAS A FGL+G
Sbjct: 86 FFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQIC 145
Query: 246 --SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ MRHR+ + L +++F + G ID GH+GGLL G +I L
Sbjct: 146 EMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGG----SIDQMGHLGGLLCGFSIGML 201
>gi|396586115|ref|ZP_10486089.1| peptidase, S54 family [Actinomyces sp. ICM47]
gi|395546456|gb|EJG14095.1| peptidase, S54 family [Actinomyces sp. ICM47]
Length = 241
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 134 TNILLAVNVLVYIAQ--FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
T ++A+ +L+Y+A F + L + L + W + T AFLH + H++ N
Sbjct: 26 TYAMMAICILMYLATWVFPSLKSSL----ALVPLFLMSRPWTILTGAFLHGGLLHILFNM 81
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPA------VGASGAIFGLV 244
SL +G +E + G R+L VY SA+ SA +C P+ VGASGA+FGL
Sbjct: 82 LSLYWVGRAIEPVLGWWRFLTVYLLSALGGSAFILAWCLIQPSELLVGTVGASGAVFGLF 141
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
G AVF+++ LGG + + ++ N+ G L GI H+GG + G A +W+L
Sbjct: 142 G--AVFVLQR---LGG--ADTTPILTLLGINLVYGFLASGISWQAHIGGAVVGVAATWVL 194
>gi|89099189|ref|ZP_01172067.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
gi|89086035|gb|EAR65158.1| hypothetical protein B14911_07900 [Bacillus sp. NRRL B-14911]
Length = 522
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
L+ +GAK N LI +G++WR T LH + HL++N +L +G +E+I G R+L +Y
Sbjct: 217 LIEYGAKYNPLILEGEWWRFFTPIVLHIGLLHLIMNTLALYYLGTAVERIYGSTRFLFIY 276
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF 274
+ + S+ F +S + GASGAIFG G+ F + + + ++ V+
Sbjct: 277 ILAGFMGALASFLFNSSVSAGASGAIFGCFGALLYFGLIQPKLF--FRTMGLNILIVLGI 334
Query: 275 NMAIGLLIKGIDN 287
N+ G + GIDN
Sbjct: 335 NLLFGFSVPGIDN 347
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 134 TNILLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVN 190
T L+ +N+L++ Q A+ D L LW G+ +RL TSAFLH ++ H+ N
Sbjct: 81 TYALIGLNLLMFALQMASPDLDRALGLWPPAA----ADGELYRLLTSAFLHFSVTHIAFN 136
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAV 249
+L +G +E G R++ +Y SA+ S + Y N+ GASGA+FGL G A
Sbjct: 137 MLALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNALTAGASGAVFGLFG--AT 194
Query: 250 FIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI-----KGIDNWGHVGGLLGG 297
F++ R +++ + +I N+A LI + I GH+GGL+ G
Sbjct: 195 FVVGKRL-----NMDVRSVVMIIGLNLAFTFLIPLFTSQNISWQGHIGGLVTG 242
>gi|16077528|ref|NP_388342.1| hypothetical protein BSU04610 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308284|ref|ZP_03590131.1| hypothetical protein Bsubs1_02613 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312606|ref|ZP_03594411.1| hypothetical protein BsubsN3_02589 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317529|ref|ZP_03598823.1| hypothetical protein BsubsJ_02548 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321805|ref|ZP_03603099.1| hypothetical protein BsubsS_02619 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314135|ref|YP_004206422.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402774706|ref|YP_006628650.1| protein YdcA [Bacillus subtilis QB928]
gi|452916522|ref|ZP_21965145.1| rhomboid family protein [Bacillus subtilis MB73/2]
gi|81345920|sp|P96617.1|YDCA_BACSU RecName: Full=Putative rhomboid protease YdcA
gi|1881271|dbj|BAA19298.1| ydcA [Bacillus subtilis]
gi|2632761|emb|CAB12268.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320020409|gb|ADV95395.1| hypothetical protein BSn5_13935 [Bacillus subtilis BSn5]
gi|402479891|gb|AFQ56400.1| YdcA [Bacillus subtilis QB928]
gi|452114662|gb|EME05061.1| rhomboid family protein [Bacillus subtilis MB73/2]
Length = 199
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+ G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I + +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F + + +
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFI 168
Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
I+ H+ GL GG +S+L
Sbjct: 169 NSNINMMAHLFGLCGGFLLSFL 190
>gi|385813424|ref|YP_005849817.1| S54 family peptidase [Lactobacillus helveticus H10]
gi|323466143|gb|ADX69830.1| S54 family peptidase [Lactobacillus helveticus H10]
Length = 226
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 153 DKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+ GA N + G Q+WRL + FLH + HL+ N + +G ME I G R+L
Sbjct: 37 NVLMKMGAMNNYAVVAGHQWWRLFAAQFLHIGVMHLVSNAIIIYYMGQYMEPIMGHVRFL 96
Query: 212 GVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNILGGGKEELQH 267
Y + I + S F + + GAS A+FGL G+ +R H ++ +
Sbjct: 97 VTYLLAGIGGNLFSLAFSSDRGLSAGASTALFGLFGAMVAIGLRNLHNPMISFLGRQALV 156
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI 327
LA + N+A+ + + GID WGH+GGL+ G ++ +LG + T + +R+ + I
Sbjct: 157 LALI---NLALDIFVPGIDIWGHIGGLITGFLLAIILGDHVMR--TYNPKWRVLAGAVLI 211
Query: 328 FHLI 331
+++
Sbjct: 212 VYIV 215
>gi|224054696|ref|XP_002298351.1| predicted protein [Populus trichocarpa]
gi|222845609|gb|EEE83156.1| predicted protein [Populus trichocarpa]
Length = 328
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+++K Q WRL + +LHA + H++ N SL IG +E+ G R VY S S +
Sbjct: 108 VVNKHQSWRLISCIWLHAGVFHVVANMLSLLLIGIRLEQEFGFFRIGLVYVISGFGGSLL 167
Query: 225 SYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
S F + +VGASGA+FGL+G ++ + I L L +I N+A+GLL
Sbjct: 168 SALFIQTGISVGASGALFGLLGGMLSELITNWTIYANKSAALTTLLCIIAINLAVGLL-P 226
Query: 284 GIDNWGHVGGLLGG 297
+DN+ H+GG L G
Sbjct: 227 HVDNYAHIGGFLSG 240
>gi|153815443|ref|ZP_01968111.1| hypothetical protein RUMTOR_01678 [Ruminococcus torques ATCC 27756]
gi|145847302|gb|EDK24220.1| peptidase, S54 family [Ruminococcus torques ATCC 27756]
Length = 175
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%)
Query: 151 TQDK--LLLWGAKINSLIDKGQ-FWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
T+D +L GA I +GQ ++R+ T FLH I HLM N L ++G +E G
Sbjct: 5 TEDAAFMLQHGAMYEPFITEGQEYYRIFTCMFLHFGITHLMNNMVMLGALGWNLELEIGK 64
Query: 208 RRYLGVYFSSAIASSAMSYRFCNSP-----AVGASGAIFGLVGSFAVFIMRHRNILGGGK 262
R++ +YF S I + +S S + GASGA+FGL+G+ ++ +R L G+
Sbjct: 65 LRFIIIYFLSGIGGNILSLIAAISAGESAVSAGASGAVFGLMGALLYVVIANRGRL--GQ 122
Query: 263 EELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ + +++ ++ GL G+DN H+GGL+ G + +L
Sbjct: 123 LSGRGMIFMVVLSLYFGLTSSGVDNMAHIGGLICGFIFAVIL 164
>gi|117921729|ref|YP_870921.1| rhomboid family protein [Shewanella sp. ANA-3]
gi|117614061|gb|ABK49515.1| Rhomboid family protein [Shewanella sp. ANA-3]
Length = 525
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T ILL +N L+++ F +Q LL WGA + L+ + Q WRL ++ FLH +
Sbjct: 333 TPILLYINTLIFVLMAFVSQHVIALPNSVLLDWGANLRQLVLEQQVWRLISNVFLHGGLM 392
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL+ N Y L G +E + G R L VY + +S S + + ++GASGAI GL
Sbjct: 393 HLVFNLYGLFFAGMFLEPLLGKWRLLWVYLCCGLVASMASIGWYEATISIGASGAIMGLF 452
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
G ++I L +L + ++ +GL G+DN H
Sbjct: 453 GVLIIWIWLGLLPLADNMPLALNLTLFVTASLVMGLF-GGVDNAAH 497
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
+ N+L+ + +++Y+ F+ KLL G ++ + G+++R+ TS FLH + H+++N
Sbjct: 165 FVNVLIWLCMILYLNNFSDV-KLLDVGGLVHFNVVHGEWYRIVTSMFLHFSFEHILMNML 223
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFI 251
SL G +E I G R L VYF + + + +S F + +VGASGAIFGL+GS +
Sbjct: 224 SLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVSLSFNTTTISVGASGAIFGLIGSIFAMM 283
Query: 252 MRHRNI 257
++NI
Sbjct: 284 YVYKNI 289
>gi|418048760|ref|ZP_12686847.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
gi|353189665|gb|EHB55175.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
Length = 248
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 18/171 (10%)
Query: 137 LLAVNVLVYIAQFATQD---KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
L+AVNV++++ Q +++ +L+LW + G+++RL TSAF+H HL+ N ++
Sbjct: 43 LIAVNVVMFVLQMTSKNLERELVLWAPGVAG----GEYYRLVTSAFMHYGALHLLFNMWA 98
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFI 251
L IGP +E G R+ +Y SA+ S + Y + GASGAIFGL G A F+
Sbjct: 99 LYVIGPPLESWLGRLRFGALYALSALGGSVLVYWLAPIGAATAGASGAIFGLFG--ATFV 156
Query: 252 M-RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ +H + +++ L +I+ N+ + + I GH+GGL+ GA I+
Sbjct: 157 LAKHLRL------DMRWLVAIIVANLILTFTVPSISWQGHIGGLVVGALIA 201
>gi|226182622|dbj|BAH30726.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 266
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 24/172 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKLL--LWGAKI-------NSLIDKGQFWRLATSAFLHANI 184
T L+ +NVL ++A FA ++ G+ I L+ G ++RL S FLH I
Sbjct: 37 TYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGSGFLHFGI 96
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA--MSYR--FCNSPAV----GA 236
HL VN Y+L +G E + G RY+G+Y S + SA M+++ F + A+ GA
Sbjct: 97 LHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSLTALSWTAGA 156
Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SGAIFG++G+ AV ++R R + VI N+ I + + GI W
Sbjct: 157 SGAIFGIMGAQAVLLLRLR-------RSPVPIISVIAINVIISISLPGISFW 201
>gi|218679679|ref|ZP_03527576.1| hypothetical protein RetlC8_12631 [Rhizobium etli CIAT 894]
Length = 376
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 22/197 (11%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLAV V VY + A + L+L G S+++
Sbjct: 174 FDGARYPVF-----TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLVLGGTFRPSIVE 228
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+HA I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 229 GAEWWRLFTAPFMHAGIVHLASNCFCLWMAGMLFERLIGWRWFAAIFFASALGGSIASVW 288
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE---LQHLAKVIIFNMAIGLLI 282
N+ VGASG I GL + +R R+ + +Q L ++ ++
Sbjct: 289 INDVNTVGVGASGGIVGLFAAVIAGSIRFRSTPVASSLQVGAIQILVPSLLPFLSAAKEG 348
Query: 283 KGIDNWGHVGGLLGGAA 299
+ ID GH GG + GAA
Sbjct: 349 QTIDYAGHFGGAVTGAA 365
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-----------KGQFWRLATSAFLHA 182
T L+A N+ VY+A L + ++L + + ++WRL TSAF H
Sbjct: 21 TAWLIAANLAVYVATVVQARSFL--DNRASALFEFTALYPPLVAFRDEWWRLLTSAFQHF 78
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIF 241
HL++N Y L +G +E+ G RYL +Y SA+ S F N+ GASGAIF
Sbjct: 79 GPMHLLLNMYMLWLLGIGIERSVGHARYLAMYLVSALGGSVAVMFFSQNALTAGASGAIF 138
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
GL+G++A+ M R +++ + +++ N+ + ++ GI H
Sbjct: 139 GLMGAYAIVAMTMR-------VDVRGIGILLVLNVGVSFIVPGISLAAH 180
>gi|417938970|ref|ZP_12582263.1| peptidase, S54 family [Streptococcus infantis SK970]
gi|343390415|gb|EGV02995.1| peptidase, S54 family [Streptococcus infantis SK970]
Length = 224
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLID--KGQFWRLATSAFLHANI 184
T+ L V LV++ F T L +GA I Q WRL ++ F+H +
Sbjct: 12 TSFFLLVTTLVFVLMFLTSGFNYTSAATLYQFGAVYPPAIKAMPEQIWRLFSATFVHIGL 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
H +VN SL +G ME+I G +++ +Y S + + F N+ GAS A++G+
Sbjct: 72 EHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLFVLVFSPNAITAGASTALYGM 131
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
S V RN LQ L + +++ N+ +LI GI GH+GG +GGA
Sbjct: 132 FASIVVLRYASRN------PYLQQLGQSYLSLLVINLVGSVLIPGISLAGHLGGAVGGAL 185
Query: 300 IS 301
++
Sbjct: 186 LA 187
>gi|383809416|ref|ZP_09964936.1| peptidase, S54 family [Rothia aeria F0474]
gi|383447768|gb|EID50745.1| peptidase, S54 family [Rothia aeria F0474]
Length = 257
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL--WGAKINSLIDKGQFWRLATSAFLHA--NIAHLMV 189
T L+ +NV+VY+ Q+ + + + K + + +++R TS FLH+ + +HL++
Sbjct: 76 TYTLIGINVVVYLLQWIIPNYWVYNEFAYKADWVAYSHEYYRAITSGFLHSQNDPSHLLL 135
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFA 248
N SL G +EK+ G RYL VY ++ + SA + ++ VGASG IFGL+G++
Sbjct: 136 NMVSLYLFGAAIEKMIGNWRYLLVYLTAILGGSAAVWVLEPHAVVVGASGGIFGLMGAYL 195
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL-LGPA 307
++ + ++ ++ + +I N+ G ++ GI H+GG + GA + L + P
Sbjct: 196 TIMVALKE-----RDNVRSVMVLIGVNVIYGFIMPGISWQAHLGGFIAGAIATLLCIAPQ 250
Query: 308 L 308
L
Sbjct: 251 L 251
>gi|385680095|ref|ZP_10054023.1| membrane protein [Amycolatopsis sp. ATCC 39116]
Length = 256
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 134 TNILLAVNVLVYIAQFATQDKL------------LLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ +NVL Y+ + L +LW I + ++WRL S FLH
Sbjct: 30 TPILIVLNVLAYVVTVSQAGSLTRNDTAPLFGDGVLWPLAIAG---EDEWWRLVMSGFLH 86
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
HL VN +L +G ME + G R+ +Y S + + Y F + GASGA
Sbjct: 87 YGPIHLAVNMLALWILGRDMETLLGRVRFTVLYLVSLLGGAVAVYLFDGVDRGTAGASGA 146
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
I+GL+G+ V ++R R + I+ N+ I + + I GH+GGL+ GA
Sbjct: 147 IYGLLGAMLVAVIRLR-------LNPAYAIGTIVLNLIITVSLPNISLLGHLGGLVVGAL 199
Query: 300 IS 301
++
Sbjct: 200 VT 201
>gi|379706281|ref|YP_005261486.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
gi|374843780|emb|CCF60842.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
Length = 247
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSL----------IDKGQFWRLATSAFLHAN 183
T L+AVNV V+ A A Q + L+ +SL + G + R+ S FLH
Sbjct: 31 TYALIAVNVAVF-AVTAAQARSLVDNYNGSSLFLRWVMFPPAVADGDWVRVIGSGFLHYG 89
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFG 242
HL++N ++L +G +E + G RYL VY S + SA F +S GASGA++G
Sbjct: 90 PIHLLLNMFALYVVGRDIELVLGRSRYLAVYLVSLLGGSAAVMVFSQDSLTAGASGAVYG 149
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
L G+ V ++R R + ++ +I N+ I + GI +GH+GGL G
Sbjct: 150 LFGAITVILIRLR-------QNATNMFIIIGINVFISFSLPGISLFGHLGGLAAG 197
>gi|420152492|ref|ZP_14659536.1| peptidase, S54 family [Actinomyces massiliensis F0489]
gi|394764617|gb|EJF46356.1| peptidase, S54 family [Actinomyces massiliensis F0489]
Length = 279
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 109 RKNSGHEGTSHLDTAR--TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSL- 165
R S G S L R T+ + T L+ V +Y+ Q A GA+ +
Sbjct: 53 RNASSRRGVSSLLGGRAITDALV----TKGLIIACVTIYLVQMALPSL----GAQFAFVP 104
Query: 166 -IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+ Q WR T+AFLHA++ HL N ++L +G +E I G R+ + SA+ S M
Sbjct: 105 AVASSQPWRFMTTAFLHASLMHLAFNMWALWVLGSALEPILGRWRFAALCALSALGGSTM 164
Query: 225 SYRFCNSPA--------VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM 276
Y + A VGASGA+FGL A+FI++ R + + +++ N+
Sbjct: 165 IYWLASPTAPASWLTSTVGASGAVFGLFA--ALFIIQRRF-----GRDTSAIVGLLVLNL 217
Query: 277 AIGLLIKGIDNWGHVGGLLGGAAISWL 303
AI + I GH+GGL+ GA ++ L
Sbjct: 218 AISFIGANISWQGHLGGLVTGAIVAAL 244
>gi|383783179|ref|YP_005467746.1| hypothetical protein AMIS_80100 [Actinoplanes missouriensis 431]
gi|381376412|dbj|BAL93230.1| hypothetical protein AMIS_80100 [Actinoplanes missouriensis 431]
Length = 301
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G+++RL T FLH + HL++N + +G +E GP R++ +Y + + + +
Sbjct: 132 IANGEWYRLFTGMFLHYGVLHLLLNMMLVAQLGRYLEAQLGPARFVALYLIAGVGGNVAA 191
Query: 226 YRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y F N P+ GAS A FGLV A ++ R G++ Q L +++ N+ I
Sbjct: 192 YLFQAPNQPSAGASTATFGLV--IAAIVLNRRT----GRDSSQ-LVPLLVINLIFTFTIP 244
Query: 284 GIDNWGHVGGLLGGA 298
GI GH+GGL+ GA
Sbjct: 245 GISIAGHLGGLVAGA 259
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 27/197 (13%)
Query: 134 TNILLAVNVLVYIAQFAT--------QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T +L+A+N++++ A+ +LL WGA G++WR T F+H I
Sbjct: 76 TRVLVAINLVIFGLMGASGLSLNQPSPAELLKWGADFGPNTLNGEWWRALTCMFVHIGIL 135
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIFG 242
H+++N + L++ GP +E++ G +L Y S + S S +P V GASGA+FG
Sbjct: 136 HILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGSLASLWL--NPGVVSAGASGAVFG 193
Query: 243 LVGSFAVFIMRHRN------ILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
+ G+ + R R + G L LA +N+ GL ID H GG +
Sbjct: 194 IYGALLGLLQRQRTSIPPAALTGLKNSGLGFLA----YNVFFGLTQPNIDLAAHAGGFVT 249
Query: 297 GAAISWLLGPALKYEFT 313
G +L G L FT
Sbjct: 250 G----FLCGLVLSRPFT 262
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Query: 137 LLAVNVLVYIAQ------FATQDKLLL-WGAKINSLIDK-GQFWRLATSAFLHANIAHLM 188
L+ V VLVY+ + F ++L GA+ + + + Q+WRL T+ FLH +HL
Sbjct: 18 LVTVMVLVYLWEVLQAHSFTINSQVLFHSGAQFSPAVYQLHQWWRLITAGFLHVTFSHLA 77
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGS 246
N +L IG +E GP R+L ++F + I+ + MS F N + GASG IFGL G+
Sbjct: 78 FNMITLYFIGRLLEIELGPWRFLALFFLTVISGNLMSLAFGGVNVISAGASGGIFGLFGA 137
Query: 247 FAVF-IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
+ ++ R + + + + I+ ++ ID H+GGLLGG ++L
Sbjct: 138 IGMLGLLDKRR--AYWRSQAKLMGIFILLSIVSSFATPDIDLSAHIGGLLGG----FILV 191
Query: 306 PALKYEFTSDDGFRI 320
PA F F++
Sbjct: 192 PAFISGFHYTGLFKV 206
>gi|440793889|gb|ELR15060.1| peptidase, S54 family protein [Acanthamoeba castellanii str. Neff]
Length = 434
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 153 DKLLLWGAK-INSLIDKGQFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRY 210
+ L+ GAK + +++ + WR T FLHA + HL +N + L +E+ G R
Sbjct: 217 ETLIALGAKDVPKIVEDYEVWRFFTPIFLHAGLIHLALNLIFQLQCF--MLERQMGFVRV 274
Query: 211 LGVY----FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
VY F +ASS R +VGASGA+FGLVG V I R+ +++ L
Sbjct: 275 GLVYIVSGFGGNLASSLFLPRLI---SVGASGALFGLVGMIFVVIFRNWSLVVSPCRNLV 331
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
L ++ ++ +GLL +DN+ HVGGL+ G S ++ P+LK+
Sbjct: 332 VLCIMVAISLFLGLL-PNVDNFAHVGGLVTGLVASLIVVPSLKH 374
>gi|451337929|ref|ZP_21908468.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
gi|449419521|gb|EMD25056.1| rhomboid family serine protease [Amycolatopsis azurea DSM 43854]
Length = 320
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 19/176 (10%)
Query: 134 TNILLAVNVLVYIAQFATQ--------DKLLLWGAKINS-LIDKGQFWRLATSAFLHANI 184
T +LLA+NV+++ A L G N + G++WR+ TS FL +
Sbjct: 90 TPVLLALNVVIFFITVAQSGSISDNNFSALFQLGELSNPPTLAAGEWWRIFTSGFLQYGL 149
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIF 241
H+ N +SL +G +E G + +YF S + SA + F + +P VGASGAIF
Sbjct: 150 LHIASNAFSLWFVGRPLETALGRVPFTALYFVSMLGGSAANLVFTDLDAAPVVGASGAIF 209
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GL+G++ V +++ R L ++ N+ I + GI H GG + G
Sbjct: 210 GLIGAYTVIVIKLR-------LNPSWLLVILGLNVFITFQVPGISILAHAGGFVAG 258
>gi|449093160|ref|YP_007425651.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
gi|449027075|gb|AGE62314.1| hypothetical protein C663_0459 [Bacillus subtilis XF-1]
Length = 208
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKI---NSLIDKGQFWRLATSAFLHANIAHLMVN 190
+LA+ ++++ ++LW + N + G++WRL T LHA HL+ N
Sbjct: 18 VTFILALQAVLWLFFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILLHAGFTHLLFN 77
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPA----VGASGAIFGLVGS 246
S+ P +E++ G R+L VY S I + +Y P VGASGAIFGL G
Sbjct: 78 SMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTY--VTEPLDYVHVGASGAIFGLFGV 135
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGP 306
+ +F++ RN L G+E + + ++ F + + + I+ H+ GL GG + + P
Sbjct: 136 Y-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFINSNINMMAHLFGLCGGVSFLFFFVP 193
Query: 307 ALK 309
K
Sbjct: 194 KKK 196
>gi|331092038|ref|ZP_08340869.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402239|gb|EGG81810.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 203
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
+++RL TS FLH AHLM N L +G +E+ G +YL +YF S +A + +S F
Sbjct: 52 EYYRLITSIFLHFGFAHLMNNMVMLFFLGSILEEEIGSFKYLLLYFVSGVAGNILS-AFM 110
Query: 230 NSP------AVGASGAIFGLVGSFAVFIMR---HRNILGGGKEELQHLAKVIIFNMAIGL 280
+ + GASGAIFG++G+ + + + H L G + + +++ ++ G
Sbjct: 111 DLKTGEFVISAGASGAIFGVIGALLIIVTKNHGHLRTLDG-----RGMVFMVVCSLYHGF 165
Query: 281 LIKGIDNWGHVGGLLGGAAISWLL 304
G+DN H+GGLL G ++++L
Sbjct: 166 TSTGVDNMAHIGGLLSGILLAFIL 189
>gi|95928805|ref|ZP_01311551.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
gi|95135150|gb|EAT16803.1| Rhomboid-like protein [Desulfuromonas acetoxidans DSM 684]
Length = 266
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
+I G++WR T A+ HA + H+ N L +GP +E+ GP ++ +Y +A+A++ +
Sbjct: 92 VIQNGEWWRCITYAYTHAGLIHIGFNMMVLYQVGPMLEREIGPSGFISLYTITALAATGL 151
Query: 225 SYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH--LAKVIIFNMAIGLL 281
Y + + +GASGA+FG++G F + + + +GG + Q + + IF G L
Sbjct: 152 GYFWHPMTVVIGASGALFGMIG----FSITYFHRIGGHQALAQRDFMIRWAIFAFIFGFL 207
Query: 282 IKGIDNWGHVGGLLGGAAISWLLGPALK 309
+ G DN H+GG + GA + AL+
Sbjct: 208 V-GADNAAHLGGAVSGAVFGLVYPIALR 234
>gi|115477653|ref|NP_001062422.1| Os08g0546700 [Oryza sativa Japonica Group]
gi|42408095|dbj|BAD09236.1| putative membrane protein [Oryza sativa Japonica Group]
gi|113624391|dbj|BAF24336.1| Os08g0546700 [Oryza sativa Japonica Group]
gi|215686417|dbj|BAG87702.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201559|gb|EEC83986.1| hypothetical protein OsI_30137 [Oryza sativa Indica Group]
gi|222640971|gb|EEE69103.1| hypothetical protein OsJ_28172 [Oryza sativa Japonica Group]
Length = 323
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S +
Sbjct: 106 VVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSVL 165
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+L
Sbjct: 166 SVLFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGILP 225
Query: 283 KGIDNWGHVGGLLGGAAISWLL 304
DN+ H+GG + G + ++L
Sbjct: 226 HA-DNFAHIGGFVTGFLLGFVL 246
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
+N I +G+ WRL T F+H+ AH++ N +SL GP +E++ G R+L VY S + +
Sbjct: 49 VNLYIMEGEVWRLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGLIA 108
Query: 222 SAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
+ + VG+SGAIFGL G + I+ +++L K+ Q + + + ++ +
Sbjct: 109 NVATLLLEPLTYTHVGSSGAIFGLFGYYIAIIIFRKHML--SKQNSQIILVLCVVSLIMT 166
Query: 280 LLIKGIDNWGHVGGLLGG 297
I+ H+ GL+ G
Sbjct: 167 FFQPNINITAHLFGLISG 184
>gi|260103121|ref|ZP_05753358.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|260083068|gb|EEW67188.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
Length = 227
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 159 GAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSS 217
GA N + G Q+WRL + FLH + HL+ N + +G ME I G R+L Y +
Sbjct: 43 GAMNNYAVVAGHQWWRLFAAQFLHIGVMHLVSNAIIIYYMGQYMEPIMGHFRFLVTYLLA 102
Query: 218 AIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMR--HRNILGGGKEELQHLAKVII 273
I + S F + + GAS A+FGL G+ +R H ++ + LA +
Sbjct: 103 GIGGNLFSLAFSSDRGLSAGASTALFGLFGAMVAIGLRNLHNPMISFLGRQALVLALI-- 160
Query: 274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
N+A+ + + GID WGH+GGL+ G ++ +LG
Sbjct: 161 -NLALDIFVPGIDIWGHIGGLITGFLLAIILG 191
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A +N I +G++WR T FLH+ AH++ N +SL GP +EK+ G ++ +Y +
Sbjct: 47 AGVNLYIAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGT 106
Query: 220 ASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
++ +Y + VG+SGAIF L G + I+ +++L ++ Q + + + +
Sbjct: 107 LANVATYLVNPLSYSHVGSSGAIFALFGFYLAIILFKKHLL--SRQNSQIVLTITVIGLV 164
Query: 278 IGLLIKGIDNWGHVGGLLGGAAI 300
+ + ++ HV GL+ G I
Sbjct: 165 MTFIQPNVNVAAHVFGLISGFLI 187
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 134 TNILLAVNVLVYIAQFAT-----QDKLLL--WGAKI---NSLIDKGQFWRLATSAFLHAN 183
T IL+ +NV V+IA A D +L+ W + +G+++RL T+ F H
Sbjct: 87 TKILIGINVAVFIAVQALPSSFLSDMVLIGRWPPAPFVPTEGVAEGEWYRLVTTMFTHEE 146
Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASGAIF 241
I H+ N SL +G +E G RYL +Y S +A S ++Y + + +GASGAIF
Sbjct: 147 IWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVLAYLLASPTTATLGASGAIF 206
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW-GHVGGLLGGAAI 300
GL G+ A + R +++ + +++ ++ I +G +W HVGGL+ GA I
Sbjct: 207 GLFGATAALVRRL-------NADMRPVVILLVISL-IFTFTRGNISWQAHVGGLVAGAVI 258
Query: 301 SWLL 304
+ +
Sbjct: 259 GYAM 262
>gi|15219034|ref|NP_175667.1| RHOMBOID-like protein 5 [Arabidopsis thaliana]
gi|5903047|gb|AAD55606.1|AC008016_16 F6D8.20 [Arabidopsis thaliana]
gi|332194705|gb|AEE32826.1| RHOMBOID-like protein 5 [Arabidopsis thaliana]
Length = 309
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
GA L+++G+ WRL + +LH HLM N SL IG +E+ G R +Y S
Sbjct: 94 GALERRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISG 153
Query: 219 IASSAMSYRFC------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
+ S +S C +VGASGA+FGL+G+ ++ + I L L +I
Sbjct: 154 LGGSLVS---CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILII 210
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ N+++G L + +DN H GG L G + ++L
Sbjct: 211 VLNLSVGFLPR-VDNSAHFGGFLAGFFLGFVL 241
>gi|302384591|ref|YP_003820413.1| rhomboid family protein [Clostridium saccharolyticum WM1]
gi|302195219|gb|ADL02790.1| Rhomboid family protein [Clostridium saccharolyticum WM1]
Length = 206
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 40/199 (20%)
Query: 131 RQWTNI-LLAVNVLVYIAQFATQDKLLLWGAKINS-------------LIDKGQFWRLAT 176
R + NI L+A+NV+ ++ L + G+ +N+ ++++G+++RL T
Sbjct: 9 RAFINIGLIAMNVIYFL-------YLEMAGSTVNTQFMVNHGAMYAPLVLEEGEYFRLLT 61
Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-------YRFC 229
S F+H I H+M N L +G +E+ G +YL Y + ++ +S YR
Sbjct: 62 SVFMHFGINHIMNNMLILFILGDNLERALGHIKYLLFYLLCGVGANVISIILNLGDYR-- 119
Query: 230 NSPAVGASGAIFGLVGS--FAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGI 285
+ + GASGAIFG++G +AVFI R R E+L + L +I ++ G G+
Sbjct: 120 SVVSAGASGAIFGVIGGLLYAVFINRGR------LEDLSARQLIIMIACSLYFGFTSTGV 173
Query: 286 DNWGHVGGLLGGAAISWLL 304
DN H+GGL G + LL
Sbjct: 174 DNAAHIGGLFFGIVLGILL 192
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 157 LW--GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
LW GA + G+ +RL SAFLHA+ HL VN +L S GP +E + GPRR+L +Y
Sbjct: 208 LWRMGANSGEAVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLY 267
Query: 215 FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
+SA+ S S + +VGASGAI+GL+ + +R +L
Sbjct: 268 GASALGGSLASAMLEDRWSVGASGAIWGLMTAGIGVALRPHGLL 311
>gi|373108079|ref|ZP_09522370.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
gi|371650245|gb|EHO15713.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
Length = 206
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 134 TNILLAVNVLVYI-----AQFATQDKLLLWGAKINSLI-DKGQFWRLATSAFLHANIAHL 187
TN ++ +NVLV++ + D LL +GA I + ++WRL T+AFLH I HL
Sbjct: 13 TNWMILINVLVFLYTALRGGMSDNDILLRYGASYTPYIFENHEYWRLLTAAFLHFGIRHL 72
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFG 242
N L G ++E G +YL Y SA+ +SA S + GASGA+F
Sbjct: 73 GNNMLVLFVTGDSLEHALGHVKYLIFYLFSAVGASAASLAVEVAMGQKVLSAGASGAVFA 132
Query: 243 LVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN---MAIGLLIKGIDNWGHVGGLLGGAA 299
++G ++R+ G+ E + ++ F+ + G +G+DN H GGLL G
Sbjct: 133 VLGGLIWVLIRN-----SGRFEEFRIRNLLFFSGMMLLSGFFTEGVDNAAHAGGLLVGFL 187
Query: 300 ISWLL 304
++ +L
Sbjct: 188 LAVVL 192
>gi|50913569|ref|YP_059541.1| rhomboid family integral membrane protein [Streptococcus pyogenes
MGAS10394]
gi|209558757|ref|YP_002285229.1| hypothetical protein Spy49_0190 [Streptococcus pyogenes NZ131]
gi|50902643|gb|AAT86358.1| Integral membrane protein (Rhomboid family) [Streptococcus pyogenes
MGAS10394]
gi|209539958|gb|ACI60534.1| hypothetical protein Spy49_0190 [Streptococcus pyogenes NZ131]
Length = 223
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
++G + ++ D Q WRL T F+H H VN +L +G +E + G RR+L +Y
Sbjct: 45 MFGLLVKAMPD--QLWRLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVL 102
Query: 217 SAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
S + +A ++ + A GAS ++FGL + V +N + L+ L K +
Sbjct: 103 SGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKN------QALKDLGKSYQTL 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ N+ + L + + GH+GG++GGA +S
Sbjct: 157 IVVNLLMNLFMPNVSMAGHIGGVVGGALLS 186
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 118 SHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGA----KINSLID-----K 168
+H A + F + T L+ N+ VY+A A ++ A + +L +
Sbjct: 5 THRGGAVSRFFRLQPVTAWLITANLAVYVATAAQARSIMANSASALFETTALFPPMVAVR 64
Query: 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS-AMSYR 227
++WRL TSAF H HL++N Y L +G +E+ G R+LG+Y SA+ S A+ +
Sbjct: 65 DEWWRLLTSAFQHFGPMHLLLNMYMLWILGLGIERSIGHARFLGLYLVSALGGSVAVMFT 124
Query: 228 FCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
N+ GASGAIFGL+G++A+ M R +++ + +++ N+ + ++ G+
Sbjct: 125 SQNALTAGASGAIFGLMGAYAIVAMSLR-------LDVKGIGLLLVLNIGVSFIVPGVSL 177
Query: 288 WGH 290
H
Sbjct: 178 GAH 180
>gi|19745364|ref|NP_606500.1| hypothetical protein spyM18_0208 [Streptococcus pyogenes MGAS8232]
gi|94993583|ref|YP_601681.1| membrane protein [Streptococcus pyogenes MGAS10750]
gi|139473052|ref|YP_001127767.1| rhomboid family membrane protein [Streptococcus pyogenes str.
Manfredo]
gi|386362060|ref|YP_006071391.1| rhomboid family protein [Streptococcus pyogenes Alab49]
gi|19747469|gb|AAL96999.1| hypothetical protein spyM18_0208 [Streptococcus pyogenes MGAS8232]
gi|94547091|gb|ABF37137.1| Integral membrane protein [Streptococcus pyogenes MGAS10750]
gi|134271298|emb|CAM29515.1| rhomboid family membrane protein [Streptococcus pyogenes str.
Manfredo]
gi|350276469|gb|AEQ23837.1| rhomboid family protein [Streptococcus pyogenes Alab49]
Length = 223
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
++G + ++ D Q WRL T F+H H VN +L +G +E + G RR+L +Y
Sbjct: 45 MFGLLVKAMPD--QLWRLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVL 102
Query: 217 SAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
S + +A ++ + A GAS ++FGL + V +N + L+ L K +
Sbjct: 103 SGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKN------QALKDLGKSYQTL 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ N+ + L + + GH+GG++GGA +S
Sbjct: 157 IVVNLLMNLFMPNVSMAGHIGGVVGGALLS 186
>gi|334880686|emb|CCB81452.1| integral membrane protein [Lactobacillus pentosus MP-10]
gi|339636895|emb|CCC15711.1| integral membrane protein [Lactobacillus pentosus IG1]
Length = 227
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 15 TQIILGITVAVFLIEWLMGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 74
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 75 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAFLT 134
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ I ++ + I N+ + GID WGHV
Sbjct: 135 IGESFWENPVI----RQLTNQFLLLTILNLVFDMFSNGIDIWGHV 175
>gi|238028881|ref|YP_002913112.1| Rhomboid-like protein [Burkholderia glumae BGR1]
gi|237878075|gb|ACR30408.1| Rhomboid-like protein [Burkholderia glumae BGR1]
Length = 542
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 137 LLAVNVLVYIAQFATQ--------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
L+AVN+L+++A + ++ WGA +G +WRL T+ FLH + L
Sbjct: 162 LIAVNLLLFLAMAMSGVSALRPDVPAMIRWGANFGPDTLEGDWWRLLTAPFLHLGVFDLG 221
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSF 247
VN L +GP E+ G R L ++ F+ +A A + + GASGAIFGL G+
Sbjct: 222 VNLLVLARVGPLAERGYGGPRLLALFLFAGVMAGMASLLQDPMQCSAGASGAIFGLFGAL 281
Query: 248 AVFIMRHRNILGGGKEELQHLAK-VIIFNMAIGLLIKGIDNWGH 290
A +RHR G +A + + + GL+ IDN H
Sbjct: 282 AALRLRHRRAPGTDAGRPGLIAPGFVAYCLYYGLMHPAIDNVAH 325
>gi|71910005|ref|YP_281555.1| rhomboid family integral membrane protein [Streptococcus pyogenes
MGAS5005]
gi|94987824|ref|YP_595925.1| rhomboid family integral membrane protein [Streptococcus pyogenes
MGAS9429]
gi|94991701|ref|YP_599800.1| integral membrane protein [Streptococcus pyogenes MGAS2096]
gi|410679882|ref|YP_006932284.1| rhomboid family protein [Streptococcus pyogenes A20]
gi|417857575|ref|ZP_12502634.1| integral membrane protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|71852787|gb|AAZ50810.1| integral membrane protein (rhomboid family) [Streptococcus pyogenes
MGAS5005]
gi|94541332|gb|ABF31381.1| integral membrane protein (Rhomboid family) [Streptococcus pyogenes
MGAS9429]
gi|94545209|gb|ABF35256.1| Integral membrane protein [Streptococcus pyogenes MGAS2096]
gi|387934530|gb|EIK42643.1| integral membrane protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454734|dbj|BAM31073.1| rhomboid family integral membrane protein [Streptococcus pyogenes
M1 476]
gi|409692471|gb|AFV37331.1| rhomboid family protein [Streptococcus pyogenes A20]
Length = 223
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
++G + ++ D Q WRL T F+H H VN +L +G +E + G RR+L +Y
Sbjct: 45 MFGLLVKAMPD--QLWRLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVL 102
Query: 217 SAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
S + +A ++ + A GAS ++FGL + V +N + L+ L K +
Sbjct: 103 SGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKN------QALKDLGKSYQTL 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ N+ + L + + GH+GG++GGA +S
Sbjct: 157 IVVNLLMNLFMPNVSMAGHIGGVVGGALLS 186
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 9/186 (4%)
Query: 128 FIGRQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKG-QFWRLATSAFLH 181
F G TNIL+ VNV+V++ T + L+ +GA + I G ++ + S F+H
Sbjct: 12 FQGAFVTNILVIVNVIVFLLMSVTGGTTNINNLIRYGAMVPESIKNGSDYFSIFASMFIH 71
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGA 239
I HL++N +L +G +E I G ++L Y + + + +S F N + GASGA
Sbjct: 72 IGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSLYFANPQTISAGASGA 131
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
IFG++G + + + R++ + Q L I+ + G L +D H+GG+L G
Sbjct: 132 IFGIIGVWLMLAITFRSVPYLAQMGQQMLIFTIL-GLIGGFLGPDVDIAAHLGGVLAGFL 190
Query: 300 ISWLLG 305
+ +++G
Sbjct: 191 LGFIIG 196
>gi|357148757|ref|XP_003574883.1| PREDICTED: inactive rhomboid protein 1-like [Brachypodium
distachyon]
Length = 321
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 9/159 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT +KL L W AK+ + + Q WRL + +LHA + HL+VN SL IG +E+ G
Sbjct: 91 ATLEKLGALDW-AKV---VHQHQGWRLISCIWLHAGLIHLIVNMLSLLFIGIRLEQQFGF 146
Query: 208 RRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEEL 265
R +Y S S +S F + +VGASGA+FGL+GS ++ + I +
Sbjct: 147 VRIGIIYLLSGFGGSVLSALFLRNHYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAI 206
Query: 266 QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
L +I+ N+AIG+L DN+ H+GG + G I ++L
Sbjct: 207 ITLLFIIVINLAIGILPHA-DNFAHIGGFVSGFLIGFVL 244
>gi|449455106|ref|XP_004145294.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449473549|ref|XP_004153913.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
gi|449508492|ref|XP_004163327.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]
Length = 383
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
+++ ++ Q WRL + +LHA + H++ N SL IG +E+ G R +Y S
Sbjct: 114 EVDKVVYGHQAWRLISCLWLHAGVFHILANMLSLVFIGIRLEQEFGFVRIGMLYIVSGFG 173
Query: 221 SSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S MS F S +VGASGA+FGL+G ++ + I L L +I+ N+A+G
Sbjct: 174 GSLMSALFIQSGISVGASGALFGLLGGMLSELLTNWTIYANKLAALLTLLFIIVINLAVG 233
Query: 280 LLIKGIDNWGHVGGLLGG 297
+L +DN+ H+GG + G
Sbjct: 234 VL-PHVDNFAHIGGFISG 250
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
Y ++ VGASGA+FGL ++ V HR LG + + M + L
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLVWMVLSALFT- 246
Query: 285 IDNW-GHVGGLLGGAAISW 302
+W GH+GGLL GA +++
Sbjct: 247 --SWQGHLGGLLTGALVTY 263
>gi|221502248|gb|EEE27986.1| peptidase, S54 family protein [Toxoplasma gondii VEG]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
V + VYIA A T L+++GA I LI G+ WRL FLH N+ H++
Sbjct: 68 VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127
Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVGS 246
+N + IG TME+ G + L VYF + ++ +S FC GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG- 186
Query: 247 FAVFIMRHRNILGGGKEELQHLAKVII--FNMAIGLLIKGIDNWGHVGGL-LGGAAISWL 303
V + I ++ + V I F + + + +D+ GH+GGL +G AA WL
Sbjct: 187 --VQLAELALIWHAIQDRNSAIISVCICLFFVFVSSFGRQMDSVGHIGGLVMGFAAGIWL 244
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 134 TNILLAVNVLVYIAQFA---TQDKLLLWGAKIN-------------------SLIDKGQF 171
T +L+A+NVLVYI + D+ + GA + + I G++
Sbjct: 72 TYVLMALNVLVYIGEVVRPEIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIADGEW 131
Query: 172 WRLATSAFLHA------NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
+RL T AFLH + HL+ N ++L +IG +E G RYL +Y SA+ S +
Sbjct: 132 YRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAVGGSVLV 191
Query: 226 YRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
Y ++ VGASGA+FGL ++ V HR LG + + M + L
Sbjct: 192 YLLAPDTSTVGASGAVFGLAAAYWVI---HRR-LGHDMAAVNRFMAGFLVWMVLSALFT- 246
Query: 285 IDNW-GHVGGLLGGAAISW 302
+W GH+GGLL GA +++
Sbjct: 247 --SWQGHLGGLLTGALVTY 263
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 131 RQWTNILLAVNV----LVYIAQFATQDKLLLWGAKINSL-------IDKGQFWRLATSAF 179
R T ILL++N+ LV + D LL A S + +GQ++RL TS F
Sbjct: 86 RLVTKILLSINLAVFLLVTVRPGLVGDLTLLGRAWDPSPPPGSIEGVAEGQWYRLVTSMF 145
Query: 180 LHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGAS 237
LH + H+ N L +G +E G RYL +Y S A SA++Y N P++GAS
Sbjct: 146 LHQELMHIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAGSALTYLIAAQNQPSLGAS 205
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GA++GL G+ AV +MR N +++ + ++ N+ GI HVGGL+ G
Sbjct: 206 GAVYGLFGATAV-LMRRMNY------DMRPVLVLLALNLVFTFTWGGIAWEAHVGGLIAG 258
Query: 298 AAIS 301
AI+
Sbjct: 259 VAIA 262
>gi|386757063|ref|YP_006230279.1| rhomboid family protein [Bacillus sp. JS]
gi|384930345|gb|AFI27023.1| Rhomboid family protein [Bacillus sp. JS]
Length = 199
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
A N + G++WRL T LHA HL+ N S+ P +E++ G R+L VY S I
Sbjct: 47 AGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGI 106
Query: 220 ASSAMSYRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
+ +Y P VGASGAIFGL G + +F++ RN L G+E + + ++ F
Sbjct: 107 IGNIGTY--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMILILLAFA 162
Query: 276 MAIGLLIKGIDNWGHVGGLLGGAAISWL 303
+ + + I+ H+ GL GG +S+L
Sbjct: 163 VLMSFINSNINMMAHLFGLCGGFLLSFL 190
>gi|401406518|ref|XP_003882708.1| Rhomboid family protein, related [Neospora caninum Liverpool]
gi|325117124|emb|CBZ52676.1| Rhomboid family protein, related [Neospora caninum Liverpool]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 136 ILLAVNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
I+ V V VYIA A T L ++GA I LI GQ WRL FLH N+
Sbjct: 64 IISLVQVAVYIASLALGLAPNEVLAPTPQTLAMFGANIPELIRIGQVWRLICPLFLHLNL 123
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFG 242
H+++N + + +G TME+ G ++ L YF I ++ +S FC GAS A+F
Sbjct: 124 FHILMNLWVQSRVGLTMEEKYGSKKLLATYFGVGILANMISAAVLFCGQMKAGASTAVFA 183
Query: 243 LVG 245
L+G
Sbjct: 184 LIG 186
>gi|52078997|ref|YP_077788.1| hypothetical protein BL02214 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648699|ref|ZP_08002910.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|404487870|ref|YP_006711976.1| transmembrane protein YdcA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680901|ref|ZP_17655740.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
gi|52002208|gb|AAU22150.1| conserved membrane protein YdcA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346871|gb|AAU39505.1| putative transmembrane protein YdcA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317389118|gb|EFV69934.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|383442007|gb|EID49716.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
Length = 199
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
I G++WR T F+HA HL+ N S+ P +E++ G ++L VY + + + +
Sbjct: 53 IANGEWWRFVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGT 112
Query: 226 YRF--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
Y VGASGAIFGL G + ++ + ++G ++ + ++ ++ + + +
Sbjct: 113 YFIEPLEYMHVGASGAIFGLFGVYLYIVLFRKELMGSANSQI--IVTILAISVLMTFVNQ 170
Query: 284 GIDNWGHVGGLLGGAAIS 301
I+ H+ GLLGG A++
Sbjct: 171 NINMMAHIFGLLGGLALA 188
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 22/188 (11%)
Query: 133 WTN-ILLAVNVLV---YIAQFATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHL 187
W N I++A+N ++ Y + T D ++ A + I G + W L T+ FLH ++ HL
Sbjct: 152 WCNWIIIALNCIIFSLYAFSYETTDWVIEHLAMTPADILAGRELWTLVTATFLHGDLMHL 211
Query: 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGL 243
N Y L +G +E G ++YL +YF IA+S +S+ F N P+VGASGAI
Sbjct: 212 AGNMYFLYVVGDNIEDAVGHKKYLALYFFCGIAASLVSF-FSNMHGLIPSVGASGAI--- 267
Query: 244 VGSFAVFIM--RHRNILGGGKEELQHLAKVIIFNMAIGLLI-------KGIDNWGHVGGL 294
G FA++++ RH ++ + ++ V+ F + +G + +G+D H+GG
Sbjct: 268 AGFFAIYLLWFRHASLTFMIVVFQKKISPVLFFIIWLGFNLFGMIMANQGVDYAAHLGGF 327
Query: 295 LGGAAISW 302
G +++
Sbjct: 328 FAGLLVAY 335
>gi|115450317|ref|NP_001048759.1| Os03g0116400 [Oryza sativa Japonica Group]
gi|108705857|gb|ABF93652.1| membrane protein, putative, expressed [Oryza sativa Japonica Group]
gi|113547230|dbj|BAF10673.1| Os03g0116400 [Oryza sativa Japonica Group]
gi|125542142|gb|EAY88281.1| hypothetical protein OsI_09736 [Oryza sativa Indica Group]
gi|125584694|gb|EAZ25358.1| hypothetical protein OsJ_09173 [Oryza sativa Japonica Group]
gi|215692511|dbj|BAG87931.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 325
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 150 ATQDKL--LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
AT K+ L+W + ++ + Q +RL TS +LHA + HL+ N SL IG +E+ G
Sbjct: 94 ATLQKMGALVW----DKVVHEHQGYRLITSIWLHAGVLHLVANMLSLIFIGLRLEQQFGY 149
Query: 208 RRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ 266
R +Y S + S +S F N +VGASGA+FGL+G+ ++ + I +
Sbjct: 150 VRIGAIYLLSGLGGSVLSSLFIRNHISVGASGALFGLLGAMLSELLTNWTIYTNKVAAVI 209
Query: 267 HLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
L VI N+A+G+L ++N+ H+GG L G + ++L
Sbjct: 210 TLLFVIAVNLALGIL-PHVNNFAHIGGFLTGFLLGFVL 246
>gi|392553138|ref|ZP_10300275.1| rhomboid-like protein [Pseudoalteromonas spongiae UST010723-006]
Length = 360
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 131 RQWTN-ILLAVNVLVYIAQFA-------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
+ W N L+A+N+L++ A F + L A +N + + W L T FLH
Sbjct: 150 KPWVNWSLIAINILIFCAYFFNIESFGFVLENFALRPADVN---NGQEIWTLLTCVFLHG 206
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC---NSPAVGASGA 239
++ HL+ N Y L IG +E G ++YL Y I +S S N P+VGASGA
Sbjct: 207 SVMHLVGNMYFLYIIGDNLEDALGHKKYLMYYLICGIGASLFSLVMSQDPNIPSVGASGA 266
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAI-----GLLI--KGIDNWGHVG 292
I GL G + ++ RH ++ + L+ V F + I GL++ G+D H+G
Sbjct: 267 IAGLFGMYLMW-FRHASLTFMFVIYQKKLSAVWFFAIWIAINIFGLIVLQDGVDYGAHIG 325
Query: 293 GLLGGAAISWLL 304
G + G I + L
Sbjct: 326 GFVVGLVIGYFL 337
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLV 244
HL +N Y L +G +E + G R Y + I +S S + ++ +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
G ++ + +LA + ++ GLL G+DN H+
Sbjct: 450 GILVIWAWKKIFPEDINWVLSINLAFFVTISLVAGLL-GGVDNAAHI 495
>gi|297582849|ref|YP_003698629.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297141306|gb|ADH98063.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 255
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
+I L + VY F +++ G N I G++WRL T FLH + H+M N ++
Sbjct: 22 ISICLFFYIWVYWFGFLGGNEIFALGVGWNFAIAMGEYWRLVTPIFLHGGLMHVMFNSFA 81
Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLVGSFAVFI 251
L GP +E G R++ ++ +A+ ++ +++ N VGASGAI+GL G + +
Sbjct: 82 LFLFGPWLEAKLGISRFVMLFLGTAVIANIVTFLLQGPNYSHVGASGAIYGLFGVYLYIV 141
Query: 252 MRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+ ++++ + Q + +II + + + GI+ H+ GL+ GAA++
Sbjct: 142 LLRKDLM--DQVSSQMIVTIIIIGVIMTFVNPGINILAHLFGLIAGAALA 189
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINFQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGHV 291
G ++ + E++ +LA + ++ GLL G+DN H+
Sbjct: 450 GILVIWAWKKIF-----PEDINWVLSINLAFFVTISLVAGLL-GGVDNAAHI 495
>gi|374710297|ref|ZP_09714731.1| hypothetical protein SinuC_08740 [Sporolactobacillus inulinus CASD]
Length = 204
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Query: 134 TNILLAVNVLVYI-----------AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHA 182
T ILL +NVL+Y+ +FA G+ +++++ G +W+L T FLH
Sbjct: 18 TAILLGINVLLYLLFVLTGTWRLAPEFAFTIFNFAAGSN-DAILNGGAWWQLVTPIFLHI 76
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS--SAMSYRFCNSPAVGASGAI 240
+H++ N +SL GP +E++ G RYL + S+ + + +A+ GASGA+
Sbjct: 77 TFSHILFNAFSLYIFGPALEQLIGRFRYLIAFLSTGVIANIAALFLEPIGFVHYGASGAL 136
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
FGL+G + ++ R + +++ + +++ ++ ID GH+ G L G A+
Sbjct: 137 FGLLGIYIYLVVFRREFI--SRQDQTIIFVIVLVSLISSFFSANIDIIGHLIGFLAGLAL 194
Query: 301 S 301
+
Sbjct: 195 A 195
>gi|401403695|ref|XP_003881541.1| Rhomboid family 1 (Predicted), related [Neospora caninum Liverpool]
gi|325115954|emb|CBZ51508.1| Rhomboid family 1 (Predicted), related [Neospora caninum Liverpool]
Length = 264
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 152 QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
+ L+L GA Q WR+ T FLHA I HL++N + I +E+ G +++L
Sbjct: 64 EQTLMLLGAAYAPAFSNLQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFL 123
Query: 212 GVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQH--- 267
YF SAI + +S + +VGAS A FG+VG + G EEL+
Sbjct: 124 ATYFFSAIVGNLLSMLVQPWALSVGASTAGFGVVGGLTA---ELSAVWGKLSEELKQMYS 180
Query: 268 ----LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAI 300
L V+I+ ++ G + +D +GH+GG L G A+
Sbjct: 181 FDVCLLAVLIYFLSFG---RTVDTYGHLGGFLAGVAV 214
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 134 TNILLAVNVLVYIAQ-FATQ-------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
T IL+ +NVLV+I +++Q +L WGA + G++WRL TS F+H +A
Sbjct: 330 TPILMYLNVLVFILMAWSSQHFINLQGSFMLEWGANFRPKVLAGEWWRLITSTFIHGGLA 389
Query: 186 HLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLV 244
HL +N Y L +G +E + G R +L + +AS A + + +VGASGAI GL+
Sbjct: 390 HLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIASICWYDATVSVGASGAIMGLL 449
Query: 245 GSFAVFIMRHRNILGGGKEELQ-----HLAKVIIFNMAIGLLIKGIDNWGHV 291
G ++ + E++ +LA + ++ GLL G+DN H+
Sbjct: 450 GILVIWAWKKIF-----PEDINWVLSINLAFFVTISLVAGLL-GGVDNAAHI 495
>gi|421276262|ref|ZP_15727085.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
gi|395878215|gb|EJG89282.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
Length = 224
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLID--KGQFWRLATSAFLHANI 184
T+ L V LV++ F T L +GA I Q WRL ++ F+H +
Sbjct: 12 TSFFLLVTTLVFVLMFLTSGFNYTSAATLYKFGAVYPPAIKAMPEQIWRLFSATFVHIGL 71
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
H +VN SL +G ME I G +++ +Y S + + F N+ GAS A++G+
Sbjct: 72 EHFLVNMLSLYFLGRQMEDIFGSKQFFFIYLLSGMMGNLFVLVFSPNAITAGASTALYGM 131
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
S V RN LQ L + +++ N+ +LI GI GH+GG +GGA
Sbjct: 132 FASIVVLRYASRN------PYLQQLGQSYLSLLVINLVGSVLIPGISLAGHLGGAVGGAL 185
Query: 300 IS 301
++
Sbjct: 186 LA 187
>gi|223936160|ref|ZP_03628073.1| Rhomboid family protein [bacterium Ellin514]
gi|223895022|gb|EEF61470.1| Rhomboid family protein [bacterium Ellin514]
Length = 373
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 133 WTNILLAVNVLVYIAQFATQDKLLLWGAKINS-LIDKGQFWRLATSAFLHANIAHLMVNC 191
+T I+LA+ + + + + + A +N + +G++WRL T LH I H++ N
Sbjct: 161 YTWIILALLICIMAVEMVVGIENAIRAADLNKHAVWRGEWWRLFTGPLLHGGIPHIVFNG 220
Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVF 250
+L +G ME + V SA+ S S + N+P+VGASG + GL+G V
Sbjct: 221 MALVGLGRLMEVLATRYHLAVVLLFSALTGSIFSLFLIPNTPSVGASGGLMGLIGFLTVL 280
Query: 251 IMRHRNILGGGKEELQHLAKVIIFNMA----IGLL-IKGIDNWGHVGGLLGGAAISWLL 304
+R + L G K I N+A IG+L IDN GH+GG LGG + LL
Sbjct: 281 GLRRKAALPAG------FVKSIFINIAIIATIGILGYSIIDNAGHLGGFLGGITMGLLL 333
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 135 NILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSL 194
N+++ + +++Y+ +F+ KLL G ++ + G+++RL TS FLH N H+++N SL
Sbjct: 167 NVVIWLCMILYLNRFSDV-KLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSL 225
Query: 195 NSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGS-FAV 249
G +E I G R L +YF S + + +S F S +VGASGAIFGL+G+ FA+
Sbjct: 226 FIFGKIVESIVGSWRMLIIYFISGLFGNFVSLSFNTSTISVGASGAIFGLIGAIFAI 282
>gi|18977600|ref|NP_578957.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|397651726|ref|YP_006492307.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
gi|18893319|gb|AAL81352.1| hypothetical protein PF1228 [Pyrococcus furiosus DSM 3638]
gi|393189317|gb|AFN04015.1| hypothetical protein PFC_05360 [Pyrococcus furiosus COM1]
Length = 193
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQ-DKLLLWGAKINSLIDKGQFWRLATSAFLHANI 184
NLF T+IL + V+ ++ + DK ++ A+IN + G+FWR+ T+ F+H
Sbjct: 3 NLFRYFPGTSILAFMIVVGFVYEIVVGFDKAIMQFAQINLYVYLGEFWRVITAIFIHMGY 62
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV---GASGAIF 241
H +N + L +G +E + G R+++ V+FS A+ + +S F P V GASG +F
Sbjct: 63 IHFALNLFWLIYLGMDLEGLLGSRKFIIVFFSGAVIGNILS-LFVLPPFVASGGASGGLF 121
Query: 242 GLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+VG+ ++ +L ++ +Q +F I + G++ H GGL+ G +
Sbjct: 122 AIVGA----LLAVEGVL---RKNMQKALINALFLFLINSIFPGVNYVAHFGGLIVGILLG 174
Query: 302 WLLGPALK 309
++ G LK
Sbjct: 175 YIYGKDLK 182
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
LL+GA+ LI GQ++R+ T+ F+H HL N Y+L IG E I G R++ YF
Sbjct: 38 LLFGAQYGPLIKSGQWYRIITAMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYF 97
Query: 216 SSAIASSAMSYRF-CNSPAVGASGAIFGLVG 245
+ I + ++ F S +VGASGAIFGLVG
Sbjct: 98 ITGIVGNVATHIFYYGSLSVGASGAIFGLVG 128
>gi|383479385|ref|YP_005388279.1| putative serine protease [Streptococcus pyogenes MGAS15252]
gi|383493310|ref|YP_005410986.1| putative serine protease [Streptococcus pyogenes MGAS1882]
gi|378927375|gb|AFC65581.1| putative serine protease [Streptococcus pyogenes MGAS15252]
gi|378929038|gb|AFC67455.1| putative serine protease [Streptococcus pyogenes MGAS1882]
Length = 223
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
++G + ++ D Q WRL T F+H H VN +L +G +E + G RR+L +Y
Sbjct: 45 MFGLLVKAMPD--QLWRLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVL 102
Query: 217 SAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
S + +A ++ + A GAS ++FGL + V +N + L+ L K +
Sbjct: 103 SGVMGNAFTFWLTPETVAAGASTSLFGLFTAIVVLSFLGKN------QALKDLGKSYQTL 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ N+ + L + + GH+GG++GGA +S
Sbjct: 157 IVVNLLMNLFMPNVSMAGHIGGVVGGALLS 186
>gi|356557429|ref|XP_003547018.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]
Length = 389
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 161 KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIA 220
++ +I + Q WRL + +LH + HL+ N SL IG +E+ G R +Y S
Sbjct: 116 EVGKVIHRHQVWRLFSCIWLHGGVVHLLANMLSLVFIGIRLEQEFGFVRIGFLYVISGFG 175
Query: 221 SSAMSYRFCNS-PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIG 279
S +S F +VGASGA+FGL+G ++ + I L L +++ N+A+G
Sbjct: 176 GSLLSALFIQEGISVGASGALFGLLGGMLSELLINWTIYANKFAALLTLIVIVVINLAVG 235
Query: 280 LLIKGIDNWGHVGGLLGGAAIS--WLLGPALKY 310
+L +DN+ H+GG + G + +L+ P K+
Sbjct: 236 IL-PHVDNFAHIGGFVSGFLLGFIFLIRPQFKW 267
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 134 TNILLAVNVLVYIAQFATQDKL-------LLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
TN ++A+NVL++ A+ Q K+ + WG L+ GQ+WR+ T+ FLH I H
Sbjct: 329 TNFIIAINVLIFCAELFWQSKIGDKDFTFIPWGGLSAPLVVGGQWWRIITANFLHMGILH 388
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA----MSYRFCNSP--AVGASGAI 240
L +N +L +G +E G +YL Y + + S A + ++ +P VGASGAI
Sbjct: 389 LGMNMLALLYLGKFVEYRLGTWKYLFAYLVAGLGSMAVITYIDLKWMTTPHITVGASGAI 448
Query: 241 FGLVGSFAVFIMR--HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
G++G+ +R + + + Q + + F + L GH GL+ G
Sbjct: 449 MGMLGAMGAIHLRGWRQAKVAAAGRQFQAVLFSVGFQLVFDLTNGHTSIVGHFSGLIIGF 508
Query: 299 AISWLL 304
I +L
Sbjct: 509 LIGLML 514
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 25/169 (14%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T IL+ + ++ Y+ Q T D L+ G KI +L D ++WRL T+AFLH
Sbjct: 188 TKILIGLCLVAYVLQGVPGLTGTSRINQFTIDYSLI-GVKI-ALDD--EYWRLVTAAFLH 243
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP--AVGASGA 239
++ H++ N Y+L +G +E + G RYL ++F+ AI + +SY + GAS A
Sbjct: 244 GSVLHILFNMYALFLLGTQLEAVLGRARYLALFFACAIGGNTLSYLMSGERTFSYGASTA 303
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
IFG FA + + R + + + V+ N+ I I GID W
Sbjct: 304 IFGF---FAAYYLIARRL----RLNTNQILIVVGINLVITFTISGIDKW 345
>gi|291537195|emb|CBL10307.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Roseburia intestinalis M50/1]
Length = 348
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 130 GRQWTNILLA-VNVLVYIAQFA---TQDKLLLW--GAKINSLID-KGQFWRLATSAFLHA 182
G +T I +A +NV+VY+ TQD + G I Q+WR+ T+ F+H
Sbjct: 156 GLSYTTIAIAAINVIVYLILEILGDTQDPFYIASHGGMYPEFIQINHQWWRIFTAMFIHF 215
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GAS 237
+ HL+ N +G +E+ G + +Y S I +SY + AV GAS
Sbjct: 216 GLPHLVNNMVIFCCVGSRLERAAGHFKMFVIYMLSGIGGGLLSYFMMLYSGDYAVSAGAS 275
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GA+FG +G ++RHR G ++ + + + ++ G GIDNW HVGG+L G
Sbjct: 276 GAVFGTIGGLIWVVIRHRGRFKG--LTVKGMILMAVLSLYYGFSTIGIDNWCHVGGILTG 333
>gi|408397516|gb|EKJ76658.1| hypothetical protein FPSE_03208 [Fusarium pseudograminearum CS3096]
Length = 570
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 160 AKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAI 219
IN + Q++R TS F+HA I H++ N +I ME GP R+L VY S+ I
Sbjct: 321 GDINQSPEPNQWYRFITSIFMHAGIIHIVFNLLLQLTIAKEMEMAIGPVRFLLVYMSAGI 380
Query: 220 ASSAM--SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
+ M +Y P+VGASGA+FG++ + ++ ++L + ++
Sbjct: 381 FGNIMGGNYAPPGQPSVGASGALFGIIALVLLDLLYSWKDRRSPVKDLLFIVLDMVIAFV 440
Query: 278 IGLLIKGIDNWGHVGGLLGGAAI 300
+GLL G+DN+ H+GG L G ++
Sbjct: 441 LGLL-PGLDNFVHIGGFLMGLSL 462
>gi|424919232|ref|ZP_18342596.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392855408|gb|EJB07929.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 579
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 134 TNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLIDKGQFWRLATSAFLH 181
T LLAV V VY + A + L+L G S+++ ++WRL T+ F+H
Sbjct: 206 TYALLAVLVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVEGAEWWRLFTAPFMH 265
Query: 182 ANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGA 239
I HL NC+ L G E++ G R + ++F+SA+ S S N+ VGASG
Sbjct: 266 GGIVHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVWINDVNTVGVGASGG 325
Query: 240 IFGLVGSFAVFIMRHRNILGGGKEE---LQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
I GL + +R R+ + +Q L ++ ++ + ID GH GG +
Sbjct: 326 IVGLFAAVIAGSIRFRSTPVASSLQVGAIQILVPSLLPFLSAAKEGQTIDYAGHFGGAVT 385
Query: 297 GAA 299
GAA
Sbjct: 386 GAA 388
>gi|392948666|ref|ZP_10314270.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
gi|392436103|gb|EIW14023.1| membrane-bound protease, rhomboid family [Lactobacillus pentosus
KCA1]
Length = 218
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLL----WGAKINSLIDKGQFWRLATSAFLHANIAHLMV 189
T I+L + V V++ ++ D L GAK N I GQ+WR T FLH + H+ +
Sbjct: 6 TQIILGITVAVFLIEWLIGDGATLVFNAIGAKNNQAIAAGQWWRFITPMFLHMGLTHIAL 65
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAV 249
N + +G +E + G R L +Y I+ + MS+ + +VGAS A F L G+F
Sbjct: 66 NGVVIYFMGMQIEAMYGHWRMLALYMLGGISGNIMSFALSTNQSVGASTACFALFGAFLT 125
Query: 250 F---IMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
+ I ++ + I N+ + GID WGHV
Sbjct: 126 IGESFWENPVI----RQLTNQFLLLTILNLVFDMFSNGIDIWGHV 166
>gi|363807474|ref|NP_001242137.1| uncharacterized protein LOC100805186 [Glycine max]
gi|255644920|gb|ACU22960.1| unknown [Glycine max]
Length = 384
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ ++ K Q WRL T +LHA + HL+ N + IG +E+ G ++F S
Sbjct: 115 VSRVVHKHQGWRLVTCMWLHAGVFHLLANMLGILVIGIRLEQEFGFVLIGLLFFISGFGG 174
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S +S F S +VGASGA+FGL+G ++ + +I L L +I+ N+A+G+
Sbjct: 175 SLLSALFIQSNISVGASGALFGLLGGMLSELITNWSIYDNKLAALLTLVIIIVINLAVGI 234
Query: 281 LIKGIDNWGHVGGLLGG 297
L +DN+ H+GG L G
Sbjct: 235 L-PHVDNFAHIGGFLTG 250
>gi|242079729|ref|XP_002444633.1| hypothetical protein SORBIDRAFT_07g025140 [Sorghum bicolor]
gi|241940983|gb|EES14128.1| hypothetical protein SORBIDRAFT_07g025140 [Sorghum bicolor]
Length = 332
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
++ + Q WRL + +LHA + HL+VN SL IG +E+ G R +Y S S +
Sbjct: 115 VVHEHQGWRLISCIWLHAGLVHLVVNMLSLLFIGIRLEQQFGFVRIGVIYLISGFGGSVL 174
Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S F N +VGASGA+FGL+GS ++ + I + L +I N+AIG+L
Sbjct: 175 SALFLHSNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGILP 234
Query: 283 KGIDNWGHVGGLLGGAAISWLL 304
DN+ H+GG G + ++L
Sbjct: 235 HA-DNFAHIGGFASGFLLGFVL 255
>gi|424780986|ref|ZP_18207852.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
gi|422842406|gb|EKU26858.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
Length = 200
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 147 AQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206
+Q LL +GA+ L+ +GQ+WRL T+ F+H AHL +N +L IGP +E G
Sbjct: 37 SQNGQNVTLLTFGAEWGPLVHQGQWWRLITAMFVHIGFAHLFLNLLTLYFIGPELEFYLG 96
Query: 207 PRRYLGVYFSSAIASSAMSYRF-CNSPAVGASGAIFGLVGSFAVFIMRHRN--ILGGGKE 263
RYL +Y I + +S F N+ + G S A+FGL G + V R + + G++
Sbjct: 97 KIRYLLLYLLCGIGGNVVSLFFDGNAISAGCSTALFGLFGYYIVQAKRSSSPWMRELGRQ 156
Query: 264 ELQHLAKVIIFNM 276
+A IIFN+
Sbjct: 157 YFVFIAMNIIFNL 169
>gi|407927474|gb|EKG20366.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 557
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N + Q++R FLH + H+ N ++G MEK+ G R+ VYF++ I +
Sbjct: 282 NGELHPNQWYRFIVPIFLHGGLIHIGFNMLVQVTVGRDMEKLIGSIRFFLVYFAAGIFGN 341
Query: 223 AM--SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+ +Y SP+VGASGAIFG++ + ++ H K EL + ++ +GL
Sbjct: 342 VLGANYAPNGSPSVGASGAIFGIIALTLLDLLYHWKERLNPKRELLFIMLDVVIAFVLGL 401
Query: 281 LIKGIDNWGHVGGLLGGAAI 300
L G+DN+ H+GG + G +
Sbjct: 402 L-PGLDNFAHIGGFIMGLGL 420
>gi|169347291|ref|ZP_02866229.1| hypothetical protein CLOSPI_00006 [Clostridium spiroforme DSM 1552]
gi|169293908|gb|EDS76041.1| peptidase, S54 family [Clostridium spiroforme DSM 1552]
Length = 214
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 29/184 (15%)
Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSL--IDKGQF-----------WRLATSAFL 180
T++++ + ++VYI + T L +G ++N I+ G F +RL T+ F+
Sbjct: 11 TSVVIGICMIVYI--YTT----LKYGIEMNVYQGIESGGFNPILVIHLKDYYRLITANFI 64
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------CNSPA 233
H + H+ NCYSL + G ME + G +RY V +S A++ NS
Sbjct: 65 HFGLMHIFCNCYSLLNFGSVMEYLLGQKRYAIVMIASMFATTIFPCALYLINGSGANSVM 124
Query: 234 VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGG 293
G SGAIFGL+G+ M +++ + +A +I + I L+ I GHV G
Sbjct: 125 GGISGAIFGLMGALLALAMEFKSVYA---YVFKQIASSVILMLLISFLVPSISLVGHVSG 181
Query: 294 LLGG 297
++GG
Sbjct: 182 MIGG 185
>gi|134096653|ref|YP_001102314.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909276|emb|CAL99388.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 259
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 24/137 (17%)
Query: 136 ILLAVNVLVYIAQ---------------FATQDKLLLWGAKINSLIDKGQFWRLATSAFL 180
+L+AVNVLV++ FAT A + L+ GQ+WRL TS FL
Sbjct: 36 VLIAVNVLVHVYTSVQAGSGMDNFDSDGFATS-------ALLPILVAGGQWWRLVTSGFL 88
Query: 181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN--SPAVGASG 238
H + HL +N +L IG +E + G R+ VYF S + S + F P GASG
Sbjct: 89 HIGLPHLAMNMIALWVIGRDLELVLGRLRFTAVYFLSLLGGSTAVFVFGELVQPVAGASG 148
Query: 239 AIFGLVGSFAVFIMRHR 255
A++GL+G AV +R +
Sbjct: 149 AVYGLMGGIAVAALRLK 165
>gi|430743565|ref|YP_007202694.1| hypothetical protein Sinac_2701 [Singulisphaera acidiphila DSM
18658]
gi|430015285|gb|AGA26999.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 411
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF----SSAIASSA 223
+G+ WR+ T F+H N+ HL +N Y L +G +E G ++L VY I S+
Sbjct: 75 RGEIWRVVTCTFVHYNLLHLGMNLYGLYQLGSLVESWYGSGQFLAVYLVIGGGGNIVSAL 134
Query: 224 MSYRFCNSPAV---GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
+ + P + G S + GLV AV R R+ +G + +++F +G
Sbjct: 135 LRHARGMEPRMHSGGGSTVVLGLVALCAVMGWRSRSRIGDHLRS--QMVGILVFTAILGQ 192
Query: 281 LIKGIDNWGHVGGLLGGAAISWL 303
L IDNWGH GG L GA + +L
Sbjct: 193 LHPMIDNWGHAGGALVGAVVGFL 215
>gi|320102859|ref|YP_004178450.1| rhomboid family protein [Isosphaera pallida ATCC 43644]
gi|319750141|gb|ADV61901.1| Rhomboid family protein [Isosphaera pallida ATCC 43644]
Length = 694
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
L+G ++ +L D+ WR T FLH I HL +N + L +GP +E++ G +L +Y
Sbjct: 328 LYGPRV-ALFDES--WRALTMMFLHVGILHLAMNAWCLWVVGPLIERMFGHGSFLAIYLI 384
Query: 217 SAI--ASSAMSYRFCNSPAVGASGAIFGLVGSF-AVFIMRHRNILGGGKEELQHLA-KVI 272
+ + A++++++ N A GASGA+FGL+G+ A + R ++I L +
Sbjct: 385 AGLGGATASLAWHPINLSA-GASGAVFGLIGALGAASLHRPQSIPPLVARTLSRAVWGFV 443
Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
N+AIGL + IDN H+GGL+ G
Sbjct: 444 ALNLAIGLSLPMIDNAAHLGGLVCG 468
>gi|257413126|ref|ZP_04742087.2| integral membrane protein [Roseburia intestinalis L1-82]
gi|257204520|gb|EEV02805.1| integral membrane protein [Roseburia intestinalis L1-82]
Length = 366
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 130 GRQWTNILLA-VNVLVYIAQFA---TQDKLLLW--GAKINSLIDKG-QFWRLATSAFLHA 182
G +T I +A +NV+VY+ TQD + G I Q+WR+ T+ F+H
Sbjct: 174 GLSYTTIAIAAINVIVYLILEILGDTQDPFYIASHGGMYPEFIQINHQWWRIFTAMFIHF 233
Query: 183 NIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY---RFCNSPAV--GAS 237
+ HL+ N +G +E+ G + +Y S I +SY + AV GAS
Sbjct: 234 GLPHLVNNMVIFFCVGSRLERAAGHFKMFVIYMLSGIGGGLLSYFMMLYSGDYAVSAGAS 293
Query: 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
GA+FG +G ++RHR G ++ + + + ++ G GIDNW HVGG+L G
Sbjct: 294 GAVFGTIGGLIWVVIRHRGRFEG--LTVKGMILMAVLSLYYGFSTIGIDNWCHVGGILTG 351
>gi|421836033|ref|ZP_16270628.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
gi|409742181|gb|EKN41685.1| peptidase, S54, partial [Clostridium botulinum CFSAN001627]
Length = 266
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 149 FATQDKLLLW-GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207
F + K+L++ GAK+NS I+ G+++RL T+ FLH + HL +N Y+LN+IGP +E G
Sbjct: 179 FTSDIKVLIFLGAKVNSFINNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGK 238
Query: 208 RRYLGVYFSSAI 219
+YL +YF S I
Sbjct: 239 VKYLIIYFISGI 250
>gi|224066895|ref|XP_002302267.1| predicted protein [Populus trichocarpa]
gi|222843993|gb|EEE81540.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 151 TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
T++ L GA +L+ + Q WRL LHA + H M+N + +G +EK G R
Sbjct: 133 TEESLDKMGAIRKTLLAEHQTWRLFMCPLLHAGVFHFMINLLCIIFLGIYLEKEFGSIRT 192
Query: 211 LGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLA 269
+Y SA + + ++ F +SPAV +SGA+FGL+G+ + R+ L L
Sbjct: 193 GIIYMLSAFSGTLVTAIFVRDSPAVCSSGALFGLLGATVSALTRNWKFYTNKVAALLTLF 252
Query: 270 KVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKY 310
V FN+ +GLL +DN+ +G ++ G +LLG L Y
Sbjct: 253 FVAGFNLMLGLL-PYMDNYSSIGSMISG----FLLGLVLFY 288
>gi|225386984|ref|ZP_03756748.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
gi|225046996|gb|EEG57242.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 21/183 (11%)
Query: 137 LLAVNVLVYI---AQFATQDK--LLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVN 190
++ +NVL ++ Q +T++ +L GA L+ D GQ++RL TS F+H ++HL+ N
Sbjct: 5 IIIINVLCFLYLELQGSTENAGFMLAHGAMFAPLVVDHGQYYRLVTSVFMHFGVSHLLNN 64
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVG 245
L +G +E+ G +YL Y + ++ +S S GASGAIFG+VG
Sbjct: 65 MLVLFVLGDNLERALGHVKYLIFYLLCGVGANLVSMTVNLMTGSLSVGAGASGAIFGVVG 124
Query: 246 S--FAVFIMRHRNILGGGKEEL--QHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
+AV + R R E+L + L +I+ + G IDN H+GGL G +
Sbjct: 125 GLVYAVGVNRGR------LEDLTSRQLGVMILLTLYHGFTSMNIDNAAHIGGLAAGILLG 178
Query: 302 WLL 304
LL
Sbjct: 179 ILL 181
>gi|365904247|ref|ZP_09442006.1| membrane-associated serine protease [Lactobacillus versmoldensis
KCTC 3814]
Length = 223
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
L+ +GAKIN L+ G +WRL T FLH + H++ N +L +G +E + G R+L
Sbjct: 35 QTLVNFGAKINYLVQDGDWWRLFTPIFLHIGVLHILTNGVTLYFVGTILEPLIGHVRFLV 94
Query: 213 VYFSSAIASSAMSYRF--CNSPAVGASGA--IFGLVGSFAVFIMRHRNILGG-GKEELQH 267
++ S I + S+ F NS + GAS + I R N LG GK L
Sbjct: 95 IFLLSGITGNLASFAFGSANSISAGASTSLFGLFAAFLALALIYRENNFLGQMGKTFLAL 154
Query: 268 LAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
+ ++ + A + G+D WGH+GG +GG +LLG AL
Sbjct: 155 IIINLLLDFA----MTGVDIWGHLGGAVGG----FLLGIAL 187
>gi|443925758|gb|ELU44527.1| rhomboid family protein [Rhizoctonia solani AG-1 IA]
Length = 1236
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM-- 224
D Q++R T FLHA I H +N ++ ++ +E+ G +L +Y S+ I + +
Sbjct: 600 DPNQWFRFITPIFLHAGIIHFALNMFAQLTLSAQVEREMGSGAFLILYASAGIFGNVLGG 659
Query: 225 SYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG 284
++ P+VGASGAIFG V V ++ H I +L L +I +A+G + G
Sbjct: 660 NFALVGVPSVGASGAIFGTVAVMWVDLLAHWKIEYRPGRKLAMLCVDLIIGVALG-FVPG 718
Query: 285 IDNWGHVGGLLGGAAISWLLGPAL 308
+DN+ H+GG L G + +L P +
Sbjct: 719 VDNFAHLGGFLMGLLTAIVLYPVI 742
>gi|417937077|ref|ZP_12580383.1| peptidase, S54 family [Streptococcus infantis X]
gi|343399519|gb|EGV12041.1| peptidase, S54 family [Streptococcus infantis X]
Length = 230
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 134 TNILLAVNVLVYIAQFATQD-------KLLLWGAKINSLIDK--GQFWRLATSAFLHANI 184
T+ L V LV++ F T L +GA I Q WRL ++ F+H +
Sbjct: 18 TSFFLLVTTLVFVLMFLTSGFNYTSAATLYKFGAVYPPAIKAMPEQIWRLFSATFVHIGL 77
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NSPAVGASGAIFGL 243
H +VN SL +G ME+I G +++ +Y S + + F ++ GAS A++G+
Sbjct: 78 QHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLFVLVFSPDAITAGASTALYGM 137
Query: 244 VGSFAVFIMRHRNILGGGKEELQHLAK----VIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
S V RN LQ L + +++ N+ +LI GI GH+GG +GGA
Sbjct: 138 FASIVVLRYASRN------PYLQQLGQSYLSLLVINLVGSVLIPGISLAGHLGGAVGGAL 191
Query: 300 IS 301
++
Sbjct: 192 LA 193
>gi|325847279|ref|ZP_08169997.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480910|gb|EGC83959.1| peptidase, S54 family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 221
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|227549462|ref|ZP_03979511.1| S54 family peptidase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078461|gb|EEI16424.1| S54 family peptidase [Corynebacterium lipophiloflavum DSM 44291]
Length = 197
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 173 RLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-NS 231
RL T+ FLH +++HL VN L IG +E+ G R++ + +ASSA ++
Sbjct: 63 RLLTAGFLHLDLSHLFVNMLMLVLIGGEIERFIGTARFVVAWVVGTLASSAAVLAMAFDT 122
Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHV 291
P GASGA+F L+ R +L+ +++ N+A + G+ WGH+
Sbjct: 123 PTAGASGALFALLAVLVAIAYRR-------SSDLRAPIALLVLNVAFTFIAPGVSVWGHL 175
Query: 292 GGLLGGAAISWLL 304
GGL G ++W L
Sbjct: 176 GGLAAGILLAWPL 188
>gi|359492423|ref|XP_002284303.2| PREDICTED: uncharacterized rhomboid protein AN10929-like [Vitis
vinifera]
Length = 379
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL T +LHA HL++N S+ +G +E+ GP R VY SA S ++ F
Sbjct: 116 QTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATLFL 175
Query: 230 N-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SPAVG+SGA+FGL+GS ++ + + L L V + N A+GLL +DN+
Sbjct: 176 QKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLL-PYVDNF 234
Query: 289 GHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSDRAPI 327
++GG + G + ++L P L GF +S + I
Sbjct: 235 SNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSI 275
>gi|302141893|emb|CBI19096.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q WRL T +LHA HL++N S+ +G +E+ GP R VY SA S ++ F
Sbjct: 116 QTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATLFL 175
Query: 230 N-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
SPAVG+SGA+FGL+GS ++ + + L L V + N A+GLL +DN+
Sbjct: 176 QKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLL-PYVDNF 234
Query: 289 GHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSDRAPI 327
++GG + G + ++L P L GF +S + I
Sbjct: 235 SNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSI 275
>gi|444307905|ref|ZP_21143612.1| rhomboid family protein [Arthrobacter sp. SJCon]
gi|443479770|gb|ELT42758.1| rhomboid family protein [Arthrobacter sp. SJCon]
Length = 214
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 24/177 (13%)
Query: 137 LLAVNVLVYIAQFATQDKLL---LWGAKINSLIDKGQF--WRLATSAFLHAN--IAHLMV 189
++AV ++Y+ Q+ + + L A I + GQF WR+ T+AFLH+ I H+++
Sbjct: 5 IIAVCAVLYVLQWLIPNDAIYQTLGFANIYAEPRYGQFEPWRMLTAAFLHSQGFILHIVL 64
Query: 190 NCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS---------PAVGASGAI 240
N Y L + G +E + G R+L +Y SAI S + Y VGASGAI
Sbjct: 65 NMYMLWAFGQALEPLLGRVRFLALYLVSAIGGS-VGYLLLTPLYEPGRPLYGVVGASGAI 123
Query: 241 FGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGG 297
FGL G+ + + RHR GG +L L I N IG +I I H+GGL+ G
Sbjct: 124 FGLFGAM-LLVQRHR---GGDTRQLWVL---IAINGVIGFVIPQIAWQAHLGGLVAG 173
>gi|28492976|ref|NP_787137.1| hypothetical protein TWT009 [Tropheryma whipplei str. Twist]
gi|28476016|gb|AAO44106.1| unknown [Tropheryma whipplei str. Twist]
Length = 212
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 167 DKGQFWRLATSAFLHANIA--HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA- 223
D Q WR+ TS FLH+ HL+ N YSL +G +E+ G R+L +YF S + ++
Sbjct: 54 DSLQPWRIFTSMFLHSTFTPLHLLFNMYSLWWLGSNLEQRIGSWRFLALYFISGLGAAVG 113
Query: 224 -MSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
+ + N+ +GASG IFGL+ +F V + + L ++ N+ I L+
Sbjct: 114 IVYLQPYNTLTLGASGGIFGLLAAFIVL-----------RIDSGQLWGIVGLNLIISFLL 162
Query: 283 KGIDNWGHVGGLLGGAAISW 302
G+ H+GGLL G +W
Sbjct: 163 PGVSWQAHIGGLLSGFVAAW 182
>gi|417099012|ref|ZP_11959759.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
gi|327192676|gb|EGE59614.1| hypothetical protein RHECNPAF_2000020 [Rhizobium etli CNPAF512]
Length = 579
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLMAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE---LQHLAKVIIFNMAIGLLI 282
N+ VGASG I GL + +R R+ + +Q L ++ ++
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRSTPVASSLQVGAIQILVPSLLPFLSAAKEG 371
Query: 283 KGIDNWGHVGGLLGGAA 299
+ ID GH GG + GAA
Sbjct: 372 QTIDYAGHFGGAVTGAA 388
>gi|212697360|ref|ZP_03305488.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
gi|212675552|gb|EEB35159.1| hypothetical protein ANHYDRO_01930 [Anaerococcus hydrogenalis DSM
7454]
Length = 221
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 132 QWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAH 186
+ T IL+A+NV+V+I T + LL + A + +G++WRL F+H + H
Sbjct: 5 KMTRILMAINVIVFIFMTVTGGSENIENLLRFNAMSKIHVYQGEWWRLFCPIFIHIGVFH 64
Query: 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF--CNSPAVGASGAIFGLV 244
L++N Y LNS+G T E + G + +L +Y + + + +Y F S + GAS +++GL
Sbjct: 65 LLMNMYFLNSVGDTFESLYGSKNFLIIYLLTGVMGNLFTYAFGEITSVSAGASTSLYGLF 124
Query: 245 G 245
G
Sbjct: 125 G 125
>gi|170780474|ref|YP_001708806.1| rhomboid family membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155042|emb|CAQ00138.1| putative rhomboid family membrane protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 287
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQF--WRLATSAFLHA--NIAHLMVNCYSLN 195
+ VL + + T LW A + + G + WR+ TSAF H+ +I H++ N S+
Sbjct: 89 LQVLPVVGDYVTTS---LWFAPVYGSVASGDYEPWRMLTSAFTHSPSSILHIVFNMLSVF 145
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-------AVGASGAIFGLVGSFA 248
G +E + G R+L ++ SA+ S ++ S VGASGAIFGL+G +
Sbjct: 146 VFGRVLEPMLGRARFLALFLISALGGS-LAVEVIGSAMGEPLQAVVGASGAIFGLMGGY- 203
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F++ + LGG + L +I N+ +G +++G+ HVGGL+ GA ++ +L
Sbjct: 204 -FVLARK--LGG---NVGPLLGIIAINLLLGFVVQGVSWQAHVGGLVTGALVAIVL 253
>gi|315302996|ref|ZP_07873713.1| rhomboid family protein, partial [Listeria ivanovii FSL F6-596]
gi|313628626|gb|EFR97042.1| rhomboid family protein [Listeria ivanovii FSL F6-596]
Length = 295
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
N LI G++WR T FLH+ + HL N L +G E+I G RY+ + I +
Sbjct: 2 NPLIYAGEWWRFITPIFLHSGLIHLASNAVMLYIVGAWAERIYGKWRYVLILILGGICGN 61
Query: 223 AMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
S+ + +VGAS A+F ++G+ ++ NI K +A ++ N+ + +
Sbjct: 62 IASFTLNMNLSVGASTAVFAVMGALLYLVVLKPNIY--AKTIGVSIASLVAINLLLDVFS 119
Query: 283 KGIDNWGHVGGLLGG 297
ID GH+GGL+GG
Sbjct: 120 SQIDIAGHIGGLVGG 134
>gi|190892260|ref|YP_001978802.1| hypothetical protein RHECIAT_CH0002672 [Rhizobium etli CIAT 652]
gi|190697539|gb|ACE91624.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 579
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 120 LDTARTNLFIGRQWTNILLAVNVLVYIAQFA------------TQDKLLLWGAKINSLID 167
D AR +F T LLA V VY + A + L+L G S+++
Sbjct: 197 FDGARYPVF-----TYALLAALVAVYAGELAFGVEASRAGSPSIRTLLMLGGTFRPSIVE 251
Query: 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227
++WRL T+ F+H I HL NC+ L G E++ G R + ++F+SA+ S S
Sbjct: 252 GAEWWRLFTAPFMHGGIIHLASNCFCLLVAGMLFERLIGWRWFAAIFFASALGGSIASVW 311
Query: 228 F--CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEE---LQHLAKVIIFNMAIGLLI 282
N+ VGASG I GL + +R R+ + +Q L ++ ++
Sbjct: 312 INDVNTVGVGASGGIVGLFAAVIAGSIRFRSTPVASSLQVGAIQILVPSLLPFLSAAKEG 371
Query: 283 KGIDNWGHVGGLLGGAA 299
+ ID GH GG + GAA
Sbjct: 372 QTIDYAGHFGGAVTGAA 388
>gi|148271189|ref|YP_001220750.1| hypothetical protein CMM_0011 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829119|emb|CAN00017.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 287
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQF--WRLATSAFLHA--NIAHLMVNCYSLN 195
+ VL + + T LW A + + G + WR+ TSAF H+ +I H++ N S+
Sbjct: 89 LQVLPVVGAYVTTS---LWFAPVYGSVASGAYEPWRMLTSAFTHSPDSILHIVFNMLSVF 145
Query: 196 SIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-------AVGASGAIFGLVGSFA 248
G +E + G R+L ++ SA+ S ++ S VGASGAIFGL+G +
Sbjct: 146 VFGRVLEPMLGRARFLALFLISALGGS-LAVEVIGSAMGEPLQAVVGASGAIFGLMGGY- 203
Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
F++ + LGG + L +I N+ +G +++G+ HVGGL+ GA ++ +L
Sbjct: 204 -FVLARK--LGG---NVGPLLGIIAINLLLGFVVQGVSWQAHVGGLVTGALVALVL 253
>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]
Length = 754
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 162 INSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS 221
++ ++D+ Q WRL T +LH + HL+ N SL IG +E+ G + +Y S
Sbjct: 120 VSRVVDRHQGWRLITCIWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGG 179
Query: 222 SAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGL 280
S +S F +VGASGA+FGL+G ++ + +I L +I N+A+G+
Sbjct: 180 SLLSGLFIQENISVGASGALFGLLGGMLSELITNWSIYANKLAAFLTLVIIIAINLAVGI 239
Query: 281 LIKGIDNWGHVGGLLGG 297
L +DN+ H+GG L G
Sbjct: 240 L-PHVDNFAHIGGFLSG 255
>gi|384495876|gb|EIE86367.1| hypothetical protein RO3G_11078 [Rhizopus delemar RA 99-880]
Length = 396
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
Q +RL F+HA I H +VN + +G +EK G RY +Y +S I +S
Sbjct: 195 QSFRLVLPIFMHAGIIHFLVNMLTHLRLGVDLEKALGTPRYALLYMASGIWGFVLSAMLS 254
Query: 230 N--SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
S + G SGA+FGL+G + ++ + IL L +L + ++ +GLL G+DN
Sbjct: 255 QNLSASTGCSGALFGLIGYMFIDVLVNWKILPHPVRNLMNLLMSTVISLVLGLL-PGLDN 313
Query: 288 WGHVGGLLGGAAISWLLGP 306
+ H+GG G + L+ P
Sbjct: 314 FAHIGGFTVGILMGMLVAP 332
>gi|295107889|emb|CBL21842.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus obeum A2-162]
Length = 200
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 137 LLAVNVLVYIA-QFATQDK----LLLWGAKINSLI-DKGQFWRLATSAFLHANIAHLMVN 190
L+ +N++V++A +F + +L GA +I + G+++RL T FLH I HL+ N
Sbjct: 16 LILINIIVFLAVEFTGSSQNTIHMLDCGAAYTPMIIEGGEYYRLFTCMFLHFGIEHLLNN 75
Query: 191 CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY-----RFCNSPAVGASGAIFGLVG 245
L +G +E++ G ++L +Y + + +S + + GASGA+F ++G
Sbjct: 76 MLVLFVLGSRLERVIGKIKFLIIYLVGGLLGNVISVLVELKSMDFAVSAGASGAVFAVMG 135
Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLL 304
+ ++R++ L G + + + F++ G G+DN HV GL+ G IS LL
Sbjct: 136 AMIYIVVRNKGWL--GDLSARQILVMAFFSLYYGFTSTGVDNTAHVAGLVCGMMISILL 192
>gi|259500554|ref|ZP_05743456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302191244|ref|ZP_07267498.1| membrane-associated serine protease [Lactobacillus iners AB-1]
gi|259167938|gb|EEW52433.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
Length = 232
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS-FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
L+GS A++ + + NI+ L ++I N+ + + +D GH+GG + G ++
Sbjct: 136 LMGSVLALYFLNNDNIIAIIIGRQAFL--LLICNIVVDFFMPSVDIIGHIGGTITGFLLT 193
Query: 302 WLLGP 306
+LG
Sbjct: 194 IILGS 198
>gi|149922613|ref|ZP_01911041.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
gi|149816499|gb|EDM75996.1| Rhomboid-like protein [Plesiocystis pacifica SIR-1]
Length = 368
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 25/174 (14%)
Query: 145 YIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTME 202
Y+ F + L WGA N ID GQ+WRLA++ FLH + HL +N ++ S+G E
Sbjct: 50 YLVLFEDLELLEAWGALTPANIWID-GQWWRLASAGFLHGSWLHLGLNMLAMWSVGRWTE 108
Query: 203 KICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGAIFGLVGSFAVFIMRHRNILGGG 261
I GP R L ++ +S++ S + SP VGAS IFG+ G V + G
Sbjct: 109 SIWGPWRQLALFMASSLGGCLASVAWAESPLVVGASAGIFGIAGGLLVARLW-------G 161
Query: 262 KEELQHLAKVIIFN-----------MAIGLLIKGID---NWGHVGGLLGGAAIS 301
E +Q +VI + GL + G++ GHVGGL+ G ++
Sbjct: 162 SESVQRELEVISTRRLAGSLGFWILVGFGLPLVGVNILAQAGHVGGLVVGMLVA 215
>gi|309805213|ref|ZP_07699265.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
gi|308165447|gb|EFO67678.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
Length = 232
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 131 RQWTNILLAVNVLVYIAQFATQ-----DKLLLWGAKIN-SLIDKGQFWRLATSAFLHANI 184
R +T ++A+ ++VY + +KLL +G N +++ K QFWRL T+ F+HA
Sbjct: 16 RIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLFTAQFIHAGF 75
Query: 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFG 242
H++ N + G +E+ G RYL +Y S + + +S+ N + GAS A+FG
Sbjct: 76 FHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVISCGASTAVFG 135
Query: 243 LVGS-FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
L+GS A++ + + NI+ L ++I N+ + + +D GH+GG + G ++
Sbjct: 136 LMGSVLALYFLNNDNIIAIIIGRQAFL--LLICNIVVDFFMPSVDIIGHIGGTITGFLLT 193
Query: 302 WLLGP 306
+LG
Sbjct: 194 IILGS 198
>gi|306828065|ref|ZP_07461329.1| rhomboid family protein [Streptococcus pyogenes ATCC 10782]
gi|304429726|gb|EFM32771.1| rhomboid family protein [Streptococcus pyogenes ATCC 10782]
Length = 223
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 157 LWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFS 216
++G + ++ D Q WRL T F+H H VN +L +G +E + G RR+L +Y
Sbjct: 45 MFGLLVKAMPD--QLWRLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVL 102
Query: 217 SAIASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK----V 271
S + + ++ + A GAS ++FGL + V +N + L+ L K +
Sbjct: 103 SGVMGNVFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKN------QALKDLGKSYQTL 156
Query: 272 IIFNMAIGLLIKGIDNWGHVGGLLGGAAIS 301
I+ N+ + L + + GH+GG++GGA +S
Sbjct: 157 IVVNLLMNLFMPNVSMAGHIGGVVGGALLS 186
>gi|295425277|ref|ZP_06817980.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
gi|295065053|gb|EFG55958.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
Length = 226
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 150 ATQDKLLLWGAKINSLIDKG-QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208
AT KL GA N + G Q+WRL T+ FLH I HL+ N + +G +E + G
Sbjct: 37 ATLVKL---GAMNNYAVVAGHQWWRLITAQFLHIGIWHLVSNIVMIYYMGLIIEPMLGHW 93
Query: 209 RYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRHRN---ILGGGKE 263
R+L +Y S + + +S F + ++ GAS A+FGL G+ +RHR + G++
Sbjct: 94 RFLLIYLLSGVGGNLLSLAFGSDKSIGAGASTALFGLFGAVIALGIRHRANPVVAYVGRQ 153
Query: 264 ELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
L + + N+ I + + ID +GH+GGL+ G ++ + G L
Sbjct: 154 AL----VLAVLNLIIDIFLPNIDIYGHIGGLISGFLLAMMSGDRL 194
>gi|294827768|ref|NP_711133.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073248|ref|YP_005987565.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|293385613|gb|AAN48151.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353457037|gb|AER01582.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
Length = 226
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 154 KLLLWGA--KINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYL 211
LL WGA +I +L GQ+WRL + F+HA HL N + L +E I G R+L
Sbjct: 69 SLLEWGANRRIETL--AGQWWRLLINVFVHAGFPHLFFNGFGLIISAIFVELILGRIRFL 126
Query: 212 GVY-FSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK 270
+Y FS S A + N+ +VGASGAIFGL G+ ++ K L +
Sbjct: 127 ILYIFSGLCGSLASIVWYPNTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVT 186
Query: 271 VIIFNMAIGLLIKGIDNWGHVGGLLGGA 298
I+ + GL GIDN H+GGL+ G
Sbjct: 187 FILTGLLWGLF-GGIDNAAHIGGLVSGT 213
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,384,218,021
Number of Sequences: 23463169
Number of extensions: 223402738
Number of successful extensions: 743578
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3025
Number of HSP's successfully gapped in prelim test: 2887
Number of HSP's that attempted gapping in prelim test: 732976
Number of HSP's gapped (non-prelim): 6847
length of query: 337
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 194
effective length of database: 9,003,962,200
effective search space: 1746768666800
effective search space used: 1746768666800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)