Query 019663
Match_columns 337
No_of_seqs 153 out of 1404
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 100.0 1.4E-27 2.9E-32 224.9 20.1 180 130-309 52-243 (278)
2 PRK10907 intramembrane serine 99.9 1.6E-26 3.5E-31 217.9 20.2 177 130-309 93-273 (276)
3 COG0705 Membrane associated se 99.9 2.2E-23 4.8E-28 191.4 18.4 183 130-312 16-217 (228)
4 PF01694 Rhomboid: Rhomboid fa 99.9 2.2E-22 4.8E-27 171.1 6.0 141 167-308 2-144 (145)
5 KOG2289 Rhomboid family protei 99.9 2.1E-22 4.5E-27 191.6 4.2 169 159-328 107-278 (316)
6 KOG2632 Rhomboid family protei 99.7 6.1E-17 1.3E-21 149.0 13.6 174 127-303 11-195 (258)
7 KOG2290 Rhomboid family protei 99.6 8.7E-16 1.9E-20 149.5 5.8 146 168-315 448-594 (652)
8 KOG2980 Integral membrane prot 99.2 1.4E-11 3E-16 115.7 3.9 178 133-312 117-307 (310)
9 PF04511 DER1: Der1-like famil 98.8 1.3E-07 2.9E-12 85.4 13.2 170 131-303 2-179 (197)
10 PF08551 DUF1751: Eukaryotic i 98.5 8.4E-08 1.8E-12 77.4 2.9 76 170-245 7-95 (99)
11 KOG0858 Predicted membrane pro 98.3 4.7E-06 1E-10 76.4 10.1 99 128-226 10-112 (239)
12 KOG2890 Predicted membrane pro 98.2 6.4E-06 1.4E-10 77.8 9.3 142 169-312 65-221 (326)
13 COG5291 Predicted membrane pro 97.0 0.0019 4.1E-08 59.7 6.7 88 130-219 19-112 (313)
14 KOG4463 Uncharacterized conser 95.8 0.011 2.3E-07 55.3 4.1 85 159-244 38-131 (323)
15 PF03419 Peptidase_U4: Sporula 57.5 56 0.0012 31.1 8.3 38 185-226 11-48 (293)
16 COG4769 Predicted membrane pro 54.3 60 0.0013 28.8 7.1 102 203-305 50-162 (181)
17 TIGR02854 spore_II_GA sigma-E 52.9 1.2E+02 0.0027 28.9 9.8 39 185-227 11-49 (288)
18 COG0705 Membrane associated se 49.6 45 0.00098 30.1 6.1 76 167-255 136-211 (228)
19 PF04632 FUSC: Fusaric acid re 48.9 1.1E+02 0.0023 32.2 9.5 22 205-226 383-404 (650)
20 PLN02715 lipid phosphate phosp 45.6 3E+02 0.0066 26.9 14.0 18 291-308 251-268 (327)
21 PF09527 ATPase_gene1: Putativ 40.0 1.3E+02 0.0028 21.0 6.4 42 185-226 8-50 (55)
22 PF12732 YtxH: YtxH-like prote 38.9 14 0.00031 27.7 0.8 31 288-318 3-33 (74)
23 COG1296 AzlC Predicted branche 33.7 4E+02 0.0087 24.9 10.8 85 213-306 146-230 (238)
24 PF14898 DUF4491: Domain of un 31.6 82 0.0018 25.2 4.0 44 186-230 5-54 (94)
25 COG4393 Predicted membrane pro 29.1 5.8E+02 0.013 25.3 10.6 93 208-304 32-136 (405)
26 PF13105 DUF3959: Protein of u 28.3 3.4E+02 0.0074 24.6 7.8 26 288-313 134-159 (239)
27 COG1289 Predicted membrane pro 26.0 4.9E+02 0.011 27.8 10.2 39 287-325 481-519 (674)
28 KOG0255 Synaptic vesicle trans 25.5 3E+02 0.0066 27.7 8.1 43 184-227 125-167 (521)
29 TIGR02230 ATPase_gene1 F0F1-AT 24.4 2.8E+02 0.0061 22.4 6.0 42 185-226 50-92 (100)
30 PRK09796 PTS system cellobiose 23.4 3.3E+02 0.0072 28.1 7.9 25 196-220 164-188 (472)
31 PF07301 DUF1453: Protein of u 23.2 4.9E+02 0.011 22.5 8.7 43 283-327 53-95 (148)
32 PF09858 DUF2085: Predicted me 22.9 3.9E+02 0.0083 21.1 6.8 20 284-303 73-92 (93)
33 PF06609 TRI12: Fungal trichot 22.3 9.7E+02 0.021 25.5 16.0 42 186-228 87-128 (599)
34 PF06946 Phage_holin_5: Phage 20.4 4.5E+02 0.0098 21.0 8.1 13 291-303 65-77 (93)
35 PF04892 VanZ: VanZ like famil 20.3 4.6E+02 0.01 21.1 8.8 74 238-311 55-133 (133)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.96 E-value=1.4e-27 Score=224.91 Aligned_cols=180 Identities=24% Similarity=0.384 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhch---------HHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHH
Q 019663 130 GRQWTNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPT 200 (337)
Q Consensus 130 ~~~~T~~li~i~v~vfll~~~~~---------~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~ 200 (337)
-+..|..++++++++|++....+ +.+.++|++.+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus 52 i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~ 131 (278)
T PTZ00101 52 WKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFT 131 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44569999999999999876521 257778888777788999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHH--HH
Q 019663 201 MEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN--MA 277 (337)
Q Consensus 201 lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~--lv 277 (337)
+|+.+|++|++.+|+++|++|++++..+.+ ..++||||++||++++........+.........+..+....++. +.
T Consensus 132 lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~ 211 (278)
T PTZ00101 132 LEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFFYY 211 (278)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654 568999999999999987654433322221111111111112222 22
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHHHHhcccc
Q 019663 278 IGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309 (337)
Q Consensus 278 l~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~ 309 (337)
.....+++|++||+||+++|+++|+++.++.+
T Consensus 212 ~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~ 243 (278)
T PTZ00101 212 FTFNGSNIDHVGHLGGLLSGISMGILYNSQME 243 (278)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 23335789999999999999999999866543
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=1.6e-26 Score=217.86 Aligned_cols=177 Identities=24% Similarity=0.260 Sum_probs=136.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchH
Q 019663 130 GRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR 208 (337)
Q Consensus 130 ~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~ 208 (337)
..|+|..++++|+++|+++....+ ....+...+......+||||++|++|+|.|+.|+++||+.+|.+|..+|+.+|++
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~ 172 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG 172 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 557899999999999999876543 3444444444455689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHH---HHhccCch
Q 019663 209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKGI 285 (337)
Q Consensus 209 ~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lv---l~~l~~~v 285 (337)
+++.+|++++++|++..+++......|+||+|||++++..+...+... .... ..+.+..+.++.++ .++...++
T Consensus 173 ~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~-~~~~--lp~~~~~f~llwl~~g~~~~~g~~I 249 (276)
T PRK10907 173 KLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQ-SGIY--LPRGLIAFALLWLVAGYFDLFGMSI 249 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccc-cchh--hhHHHHHHHHHHHHHHHHHccCccc
Confidence 999999999999999998888778899999999999976544322111 1110 01112222222222 33445689
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccc
Q 019663 286 DNWGHVGGLLGGAAISWLLGPALK 309 (337)
Q Consensus 286 s~~gHLgG~l~G~l~g~ll~~~~~ 309 (337)
++.||++|+++|+++|++..++.+
T Consensus 250 an~AHlgGli~Gll~g~~~~~~~~ 273 (276)
T PRK10907 250 ANAAHVAGLAVGLAMAFWDTRNAR 273 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999998765544
No 3
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.91 E-value=2.2e-23 Score=191.44 Aligned_cols=183 Identities=29% Similarity=0.461 Sum_probs=142.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhchHH-HHH-------hhhcchhhhccC---CcchheehhcccCCHHHHHHHHHHHHHHH
Q 019663 130 GRQWTNILLAVNVLVYIAQFATQDK-LLL-------WGAKINSLIDKG---QFWRLATSAFLHANIAHLMVNCYSLNSIG 198 (337)
Q Consensus 130 ~~~~T~~li~i~v~vfll~~~~~~~-l~~-------~g~~~~~~i~~g---q~WRL~Ts~FlH~~~~HLl~N~~~L~~~G 198 (337)
.++.|..++++|+++|+.+...... ... .+..+....... |+||++|++|+|.|+.|+++||+.++.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 5678999999999999998765332 111 223333332222 89999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC---CccccHHHHHHHHHHHHHHHHHhhhhhcCC---chhHHHHHHHHH
Q 019663 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAVFIMRHRNILGG---GKEELQHLAKVI 272 (337)
Q Consensus 199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~---~~~vGaSGaVfGll~a~~v~~~~~~~~l~~---~~~~l~~i~~~l 272 (337)
..+|+.+|+.+|+.+|+++++++++.++.+.+ .+.+|+||+++|+++++.+..+..+..... +......+...+
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL 175 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence 99999999999999999999999999888764 369999999999999999999987754432 233333333444
Q ss_pred HHHHHHHhccC--chhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663 273 IFNMAIGLLIK--GIDNWGHVGGLLGGAAISWLLGPALKYEF 312 (337)
Q Consensus 273 ~~~lvl~~l~~--~vs~~gHLgG~l~G~l~g~ll~~~~~~~~ 312 (337)
+.++....... ++++.+|++|+++|+++++.+.++..+++
T Consensus 176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~~~ 217 (228)
T COG0705 176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRKRR 217 (228)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 44555554433 69999999999999999999877665443
No 4
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.86 E-value=2.2e-22 Score=171.10 Aligned_cols=141 Identities=36% Similarity=0.601 Sum_probs=106.6
Q ss_pred ccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcCC--ccccHHHHHHHHH
Q 019663 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLV 244 (337)
Q Consensus 167 ~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~--~~vGaSGaVfGll 244 (337)
+++|+||++||.|+|.|+.|++.|++.++.+|..+|+.+|+.+++.+|+++++.++++..++.+. +.+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 57899999999999999999999999999999999999999999999999999999999887654 5999999999999
Q ss_pred HHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhccc
Q 019663 245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308 (337)
Q Consensus 245 ~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~ 308 (337)
++.....+..++...............+...+.... .+++++.+|++|+++|++++..+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~~~ 144 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILRRP 144 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988764333211111111111222333333 578999999999999999999987765
No 5
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-22 Score=191.57 Aligned_cols=169 Identities=31% Similarity=0.488 Sum_probs=141.7
Q ss_pred hhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHH
Q 019663 159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGAS 237 (337)
Q Consensus 159 g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaS 237 (337)
+....+...++|+||++|++|+|+|+.||++||+.+..+|..+|...|..|+-.+|+++++.|++++.++.. ..++|+|
T Consensus 107 ~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGAS 186 (316)
T KOG2289|consen 107 GLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGAS 186 (316)
T ss_pred CceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceeccc
Confidence 344567778899999999999999999999999999999999999999999999999999999999999875 4599999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhcccccccCCccc
Q 019663 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDG 317 (337)
Q Consensus 238 GaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~~~~~~ 317 (337)
|++||++++.......++..+......+..++.++++++.+++.+ .+++++|++|++.|..+++++..+.+..--..+.
T Consensus 187 ggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~-~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~ 265 (316)
T KOG2289|consen 187 GGVFALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAP-YVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGL 265 (316)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhcccc-ceeccccccccCCCcchhHHhhhccceeEEeccc
Confidence 999999999999998888877766555677777777888888765 6888999999999999999987666554433333
Q ss_pred cc--cccccCchh
Q 019663 318 FR--IFSDRAPIF 328 (337)
Q Consensus 318 r~--~f~~~~~~~ 328 (337)
+. .+.++++..
T Consensus 266 ~~~~~~~~~~~~q 278 (316)
T KOG2289|consen 266 IVLRVFSKRLPYQ 278 (316)
T ss_pred eeeeccccccccc
Confidence 33 555555543
No 6
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.72 E-value=6.1e-17 Score=149.00 Aligned_cols=174 Identities=22% Similarity=0.260 Sum_probs=139.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 019663 127 LFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206 (337)
Q Consensus 127 ~~~~~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G 206 (337)
..+-+.+|..++.++.++|+......-. .....+...+.+.|.||++||.++|.+..|+++||+++|.+|...|+..|
T Consensus 11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G 88 (258)
T KOG2632|consen 11 WMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHG 88 (258)
T ss_pred cccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhcc
Confidence 4445678999999999999988776433 33445667778899999999999999999999999999999999999999
Q ss_pred -hHHHHHHHHHHHHHHHHHHhHhc----------CCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHH
Q 019663 207 -PRRYLGVYFSSAIASSAMSYRFC----------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275 (337)
Q Consensus 207 -~~~fl~lyl~sgi~g~l~s~l~~----------~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~ 275 (337)
+.+++.++.+.+++.++..++.. .+..+|.|++.|+.+.......+...+.+... ..+.......+..
T Consensus 89 ~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~-~siP~~l~Pw~lL 167 (258)
T KOG2632|consen 89 TTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGL-FSIPIVLAPWALL 167 (258)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccc-ccccHHHHHHHHH
Confidence 88888888888888888876543 24579999999999999888877766433321 1234444555566
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHH
Q 019663 276 MAIGLLIKGIDNWGHVGGLLGGAAISWL 303 (337)
Q Consensus 276 lvl~~l~~~vs~~gHLgG~l~G~l~g~l 303 (337)
+...++.++.++.||++|+++|+++++.
T Consensus 168 i~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 168 IATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 6666777899999999999999999983
No 7
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.59 E-value=8.7e-16 Score=149.55 Aligned_cols=146 Identities=30% Similarity=0.442 Sum_probs=124.5
Q ss_pred cCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHHHHHHHHHHH
Q 019663 168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS 246 (337)
Q Consensus 168 ~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGll~a 246 (337)
..|++||+||.|+|+|+.|++..+.....+..-+|+..|..|...+|+++|+.||+.+..+.+ .+.+|+||+-+|++.+
T Consensus 448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~ 527 (652)
T KOG2290|consen 448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC 527 (652)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence 358999999999999999999999999999999999999999999999999999999998875 5799999999999999
Q ss_pred HHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhcccccccCCc
Q 019663 247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSD 315 (337)
Q Consensus 247 ~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~~~~ 315 (337)
..+-.+..+..+..+...+..+.+.+... .++++ +-+|+++|+.|++.|++.++.+.|-......+.
T Consensus 528 l~vEl~qs~~il~~~w~a~~~Lia~~L~L-~iGli-PWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~ 594 (652)
T KOG2290|consen 528 LFVELFQSWQILERPWRAFFHLIATLLVL-CIGLI-PWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL 594 (652)
T ss_pred HHHHHHhhhHhhhhHHHHHHHHHHHHHHH-Hhccc-cchhhHHHHHHHHHHHHHHHHhhccccccchhh
Confidence 99999999988876554444433333333 33665 479999999999999999999998877765444
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-11 Score=115.66 Aligned_cols=178 Identities=20% Similarity=0.226 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHH--HHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHH-HHHHHhchHH
Q 019663 133 WTNILLAVNVLVYIAQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRR 209 (337)
Q Consensus 133 ~T~~li~i~v~vfll~~~~~~~--l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~-~lE~~~G~~~ 209 (337)
..+.++++|+.+|.++...+-. ...|... +.....--|.+++|.|.|.+.+|+..||+.++.+.. .+...+|...
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls--~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~ 194 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLS--RNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSS 194 (310)
T ss_pred chhHHHHHHHHHHHHHHhcchhhhhhhHHhh--cccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhh
Confidence 6888999999999999887542 2233321 122333456699999999999999999999999988 7878899999
Q ss_pred HHHHHHHHHHHHHHHHhHh-----cCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHH--HHHH--HHHHHHHHHh
Q 019663 210 YLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ--HLAK--VIIFNMAIGL 280 (337)
Q Consensus 210 fl~lyl~sgi~g~l~s~l~-----~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~--~i~~--~l~~~lvl~~ 280 (337)
+.++|+.++..|....... ..++.+||||+++++++..+..+|+.+.++.+....-. .... +..+.+-...
T Consensus 195 ~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~ 274 (310)
T KOG2980|consen 195 FFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLI 274 (310)
T ss_pred cccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHHhhhccee
Confidence 9999997666666655433 13578999999999999999999988866544321111 1111 1111111111
Q ss_pred c-cCchhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663 281 L-IKGIDNWGHVGGLLGGAAISWLLGPALKYEF 312 (337)
Q Consensus 281 l-~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~ 312 (337)
+ -...|+.+|++|.+.|++.+.+..++.++++
T Consensus 275 l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kgR 307 (310)
T KOG2980|consen 275 LGWGFFNHAAHLSGSLFGVVVATYLWARIRKGR 307 (310)
T ss_pred eccccchhHhhhcchHHHHHHHHHHHHHHHcCc
Confidence 1 2457777999999999999999876666553
No 9
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=98.77 E-value=1.3e-07 Score=85.37 Aligned_cols=170 Identities=20% Similarity=0.151 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCCH-HHHHHHHHHHHHHHHHHHHH-h-ch
Q 019663 131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEKI-C-GP 207 (337)
Q Consensus 131 ~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~-~HLl~N~~~L~~~G~~lE~~-~-G~ 207 (337)
||+|..+++..+++.++....--+..+....++.+++++|+||++|+.|.-++. .++++|++.++..++.+|+. + ++
T Consensus 2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~ 81 (197)
T PF04511_consen 2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR 81 (197)
T ss_pred ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence 688999999999999888776444444555566667889999999999997766 79999999999999999998 2 22
Q ss_pred -HHHHHHHHHHHHHHHHHHhHhcCC----ccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhcc
Q 019663 208 -RRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282 (337)
Q Consensus 208 -~~fl~lyl~sgi~g~l~s~l~~~~----~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~ 282 (337)
.+|+...+.+++.-.+++.+.... +.+| +.-...+.-.++-..|+.+..+... ..++......+. +++.++.
T Consensus 82 ~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~-~~i~a~ylP~~~-~~~~~l~ 158 (197)
T PF04511_consen 82 SADYLWFLLFGASLILILSLLIGPYFFNIPFLG-SSLSFALTYIWSRKNPNAQVSFFGL-FTIKAKYLPWVL-LAFSLLF 158 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhCcccceeeEEE-EEEChhhHHHHH-HHHHHHh
Confidence 578777777766666666543211 1122 1222222222222223222222111 112222222222 3333333
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 019663 283 KGIDNWGHVGGLLGGAAISWL 303 (337)
Q Consensus 283 ~~vs~~gHLgG~l~G~l~g~l 303 (337)
.+.+...++.|+++|.++-++
T Consensus 159 ~~~~~~~~l~Gi~~Ghly~fl 179 (197)
T PF04511_consen 159 GGSSPIPDLLGILVGHLYYFL 179 (197)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 344666899999999998544
No 10
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.48 E-value=8.4e-08 Score=77.44 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=65.6
Q ss_pred CcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhc--------C-----CccccH
Q 019663 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--------N-----SPAVGA 236 (337)
Q Consensus 170 q~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~--------~-----~~~vGa 236 (337)
++|+++|+.|++.++..++.|.+.++..|+.+|+.||+++++.+.+..+++.|+...+.. + .+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 799999999999999999999999999999999999999999999999999998876532 1 345577
Q ss_pred HHHHHHHHH
Q 019663 237 SGAIFGLVG 245 (337)
Q Consensus 237 SGaVfGll~ 245 (337)
.|.+.|++.
T Consensus 87 ~~~~~g~lV 95 (99)
T PF08551_consen 87 MGVLAGFLV 95 (99)
T ss_pred HHhHhheEE
Confidence 777777654
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=98.30 E-value=4.7e-06 Score=76.43 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=80.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCC-HHHHHHHHHHHHHHHHHHHHHh-
Q 019663 128 FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEKIC- 205 (337)
Q Consensus 128 ~~~~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~-~~HLl~N~~~L~~~G~~lE~~~- 205 (337)
.+-||+|....++|++..++....--+..+.-.+++-++++.|+||++|+.+.-+. =.|.++||+.++-..+.+|+--
T Consensus 10 ~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f 89 (239)
T KOG0858|consen 10 LQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSF 89 (239)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34578999999999999988877655444555566777889999999999999966 4999999999999999999953
Q ss_pred --chHHHHHHHHHHHHHHHHHHh
Q 019663 206 --GPRRYLGVYFSSAIASSAMSY 226 (337)
Q Consensus 206 --G~~~fl~lyl~sgi~g~l~s~ 226 (337)
-+.+|+.+++.++++-.+.++
T Consensus 90 ~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 90 RGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 347888888888888776655
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=98.22 E-value=6.4e-06 Score=77.80 Aligned_cols=142 Identities=16% Similarity=0.236 Sum_probs=101.5
Q ss_pred CCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHh-------c------CCcccc
Q 019663 169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------C------NSPAVG 235 (337)
Q Consensus 169 gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~-------~------~~~~vG 235 (337)
..+|+++|+.|+-.+++..+.|.+.+.+.|..+|..||+..++.+|.+.....+++.... . ..+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 489999999999999999999999999999999999999999998886665555543221 1 235789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc-CCchhHHHHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663 236 ASGAIFGLVGSFAVFIMRHRNIL-GGGKEELQHL-AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEF 312 (337)
Q Consensus 236 aSGaVfGll~a~~v~~~~~~~~l-~~~~~~l~~i-~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~ 312 (337)
.-|.+.|++.++--.+|+..... ..+....+.+ ...+.+.+++.+. .-...+.+.-+..|...+|.+.+-.++.+
T Consensus 145 ~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~--~f~~f~~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 145 TTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII--TFLVFASLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred chHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH--HHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence 99999999999999888774211 1111110000 1111222233322 34556668888999999999988777765
No 13
>COG5291 Predicted membrane protein [Function unknown]
Probab=96.99 E-value=0.0019 Score=59.70 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhchHHHHHhhh--cchhhhccCCcchheehhcccCCH-HHHHHHHHHHHHHHHHHHH-Hh
Q 019663 130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEK-IC 205 (337)
Q Consensus 130 ~~~~T~~li~i~v~vfll~~~~~~~l~~~g~--~~~~~i~~gq~WRL~Ts~FlH~~~-~HLl~N~~~L~~~G~~lE~-~~ 205 (337)
-||+|..+..+..++.++....-. ..|.. ..+-.+++.|+||++||-..-++. ...++|++.+|-..+.+|+ ..
T Consensus 19 IPPITRy~~ll~~a~til~~~~lv--sPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f 96 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLV--SPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCF 96 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhc--CccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcccc
Confidence 577887777766666655433311 11111 234455778999999988888775 8999999999999999998 45
Q ss_pred chH--HHHHHHHHHHH
Q 019663 206 GPR--RYLGVYFSSAI 219 (337)
Q Consensus 206 G~~--~fl~lyl~sgi 219 (337)
++. .++...+.+.+
T Consensus 97 ~~~lv~Y~~yl~~~~l 112 (313)
T COG5291 97 NTSLVEYFWYLLVISL 112 (313)
T ss_pred CccHHHHHHHHHHHHH
Confidence 554 55444444433
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.011 Score=55.31 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=63.3
Q ss_pred hhcchhhhc-cCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhc--------
Q 019663 159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC-------- 229 (337)
Q Consensus 159 g~~~~~~i~-~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~-------- 229 (337)
+..+...+. ..|+||++-+.|.-.|-..++.-.+.+|.+ +-+|+.+|+.+|..+.+.+++.+-++.+.+.
T Consensus 38 ~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il~~l~~~~~~ 116 (323)
T KOG4463|consen 38 GLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVILLSLLKDTTA 116 (323)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444333 479999999999999999999888877776 7799999999999999988888888765431
Q ss_pred CCccccHHHHHHHHH
Q 019663 230 NSPAVGASGAIFGLV 244 (337)
Q Consensus 230 ~~~~vGaSGaVfGll 244 (337)
+.-.++.-|.+|+.+
T Consensus 117 nl~~~qp~~liFa~~ 131 (323)
T KOG4463|consen 117 NLLTSQPYGLIFASF 131 (323)
T ss_pred hhhhcCCCceeeeec
Confidence 233445555555554
No 15
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=57.50 E-value=56 Score=31.09 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q 019663 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSY 226 (337)
Q Consensus 185 ~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~ 226 (337)
..+++|.+.|+..+..+......+|.+ +++++|++.++
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll----~~A~~Gal~~~ 48 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLL----LGAAIGALYSL 48 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHHH
Confidence 568899999999999998888888874 34444555443
No 16
>COG4769 Predicted membrane protein [Function unknown]
Probab=54.25 E-value=60 Score=28.75 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=51.0
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHhH-hcCCccccHHHHHHHHHHHHHHHHHhhhh--hcCCch--hHHHHHHHHHHHH--
Q 019663 203 KICGPRRYLGVYFSSAIASSAMSYR-FCNSPAVGASGAIFGLVGSFAVFIMRHRN--ILGGGK--EELQHLAKVIIFN-- 275 (337)
Q Consensus 203 ~~~G~~~fl~lyl~sgi~g~l~s~l-~~~~~~vGaSGaVfGll~a~~v~~~~~~~--~l~~~~--~~l~~i~~~l~~~-- 275 (337)
..++.+..+.+-++=.+++++++-. +.+.-..+++|++.+.+..+.+....-|. .++... -..-.+...++..
T Consensus 50 ~~l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLivas~L 129 (181)
T COG4769 50 ETLNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVMGAFTHNLGQLIVASFL 129 (181)
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHcCCceEeeeehhhHHHHHHhHHHHHHHHHH
Confidence 3456666665555555555555432 22334567888888887777766544332 111110 0011111111111
Q ss_pred ----HHHHhccCchhHHHHHHHHHHHHHHHHHHh
Q 019663 276 ----MAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305 (337)
Q Consensus 276 ----lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~ 305 (337)
-++.+ -|-..+.|-+.|...|++...++.
T Consensus 130 v~~~~v~l~-lPll~flGivsG~~vg~~~~~~i~ 162 (181)
T COG4769 130 VFTTSVMLY-LPLLIFLGIVSGTAVGILANTLII 162 (181)
T ss_pred HhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 134666777888888888776653
No 17
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=52.86 E-value=1.2e+02 Score=28.85 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhH
Q 019663 185 AHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227 (337)
Q Consensus 185 ~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l 227 (337)
..+++|.+.|+..+..+.+....+|.++ ++++|++.+++
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~----ga~iGa~~~~~ 49 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLL----AALIGSLYVLF 49 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHH----HHHHHHHHHHH
Confidence 5788999999999999988888888744 44444444433
No 18
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=49.63 E-value=45 Score=30.15 Aligned_cols=76 Identities=21% Similarity=0.183 Sum_probs=53.6
Q ss_pred ccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHH
Q 019663 167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGS 246 (337)
Q Consensus 167 ~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a 246 (337)
..|++++++++.++|....+...+... ..+.+.+++...+..+++.......+.++.++-+.|+++.
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G 202 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGG 202 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 457788888888888777766666544 3445667777777777777666555688899999999887
Q ss_pred HHHHHHhhh
Q 019663 247 FAVFIMRHR 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
........+
T Consensus 203 ~l~~~~~~~ 211 (228)
T COG0705 203 LLLAALLSR 211 (228)
T ss_pred HHHHHHHhh
Confidence 766544333
No 19
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=48.92 E-value=1.1e+02 Score=32.25 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=10.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHh
Q 019663 205 CGPRRYLGVYFSSAIASSAMSY 226 (337)
Q Consensus 205 ~G~~~fl~lyl~sgi~g~l~s~ 226 (337)
-.+.+....++.+.++|.++..
T Consensus 383 ~~P~~~~~~~~~G~l~~~~~a~ 404 (650)
T PF04632_consen 383 DNPAPALRLFLIGALLGAVLAF 404 (650)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444443
No 20
>PLN02715 lipid phosphate phosphatase
Probab=45.62 E-value=3e+02 Score=26.94 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhccc
Q 019663 291 VGGLLGGAAISWLLGPAL 308 (337)
Q Consensus 291 LgG~l~G~l~g~ll~~~~ 308 (337)
++|.+.|++++++..++.
T Consensus 251 laG~lLG~~~a~~~y~~~ 268 (327)
T PLN02715 251 FAGALIGILVAAFCYRQF 268 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888887765444
No 21
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=40.00 E-value=1.3e+02 Score=20.99 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHh
Q 019663 185 AHLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSY 226 (337)
Q Consensus 185 ~HLl~N~~~L~~~G~~lE~~~G~-~~fl~lyl~sgi~g~l~s~ 226 (337)
..++.++..-..+|..+++.+++ .-+..+.++.|+.+++...
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 35677788888999999999998 5555566666666666544
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=38.92 E-value=14 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCcccc
Q 019663 288 WGHVGGLLGGAAISWLLGPALKYEFTSDDGF 318 (337)
Q Consensus 288 ~gHLgG~l~G~l~g~ll~~~~~~~~~~~~~r 318 (337)
.|-+.|.++|.+.++++.|+..++-+....+
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~ 33 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGKETREKLKD 33 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4668899999999999998877765544443
No 23
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=33.70 E-value=4e+02 Score=24.86 Aligned_cols=85 Identities=14% Similarity=0.289 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHH
Q 019663 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVG 292 (337)
Q Consensus 213 lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLg 292 (337)
.+.+++++|+++.-...+....|..=++-+++....+-.++.++ ........++...+...+.+ ..+.-+.
T Consensus 146 ~Wv~~t~iGa~~G~~l~~~~~~GldFal~a~Fi~L~~~~~k~~~-------~~~~~~~~~~~a~~~~~l~~--~~~~v~~ 216 (238)
T COG1296 146 YWVVGTLIGALLGSLLPDPETIGLDFALPALFIVLVIPQFKRRK-------TLLSVLASLVLALVALVLFG--GPWAVLA 216 (238)
T ss_pred HHHHHHHHHHHhhhccCCHhhhhHHHHHHHHHHHHHHHHHhcch-------hHHHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 34455555655543333444556555555555544444333322 11122222222222222211 4445567
Q ss_pred HHHHHHHHHHHHhc
Q 019663 293 GLLGGAAISWLLGP 306 (337)
Q Consensus 293 G~l~G~l~g~ll~~ 306 (337)
|.++|++...+..+
T Consensus 217 ~~la~l~~~~l~~~ 230 (238)
T COG1296 217 GILAGLLAALLLAA 230 (238)
T ss_pred HHHHHHHHHHHhcc
Confidence 78888877666543
No 24
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=31.55 E-value=82 Score=25.17 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHH------HHHHHhchHHHHHHHHHHHHHHHHHHhHhcC
Q 019663 186 HLMVNCYSLNSIGP------TMEKICGPRRYLGVYFSSAIASSAMSYRFCN 230 (337)
Q Consensus 186 HLl~N~~~L~~~G~------~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~ 230 (337)
-++.....+..+|- ..|+.+|+ +.+.+|++.|+.....++...+
T Consensus 5 Giiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~ 54 (94)
T PF14898_consen 5 GIIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFVSN 54 (94)
T ss_pred hHHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHHcc
Confidence 34555555666653 35788888 4789999999999888876544
No 25
>COG4393 Predicted membrane protein [Function unknown]
Probab=29.05 E-value=5.8e+02 Score=25.30 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhc--CCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhcc---
Q 019663 208 RRYLGVYFSSAIASSAMSYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI--- 282 (337)
Q Consensus 208 ~~fl~lyl~sgi~g~l~s~l~~--~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~--- 282 (337)
...+++-++++..|...+..+. +...+-.+++..|.+..+.+...-.+..+.. .+.........+-.+..+
T Consensus 32 ~~vvwl~~L~~~~g~~~~~y~pKsq~~~l~l~~v~i~sLLlf~~sqfw~~i~l~~----Fw~~lLsF~aaL~wg~~~n~f 107 (405)
T COG4393 32 FFVVWLGFLFGYFGFFIAAYFPKSQNLILNLDFVFIGSLLLFFISQFWKKIELLN----FWLLLLSFCAALHWGFMPNLF 107 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccCcccc
Confidence 3445555667777777665554 3457778888888777666654444432221 122222222333333332
Q ss_pred -------CchhHHHHHHHHHHHHHHHHHH
Q 019663 283 -------KGIDNWGHVGGLLGGAAISWLL 304 (337)
Q Consensus 283 -------~~vs~~gHLgG~l~G~l~g~ll 304 (337)
-+++..-|+++++.+++..+++
T Consensus 108 ~if~tdvinTd~ll~lg~i~lall~~ili 136 (405)
T COG4393 108 AIFGTDVINTDSLLRLGAILLALLTIILI 136 (405)
T ss_pred ccccccccccHHHHHhHHHHHHHHHHHHH
Confidence 3577788999999998887654
No 26
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=28.26 E-value=3.4e+02 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccC
Q 019663 288 WGHVGGLLGGAAISWLLGPALKYEFT 313 (337)
Q Consensus 288 ~gHLgG~l~G~l~g~ll~~~~~~~~~ 313 (337)
.--++|++.|-+++.++.++.+.++.
T Consensus 134 llLvgGli~GGLlA~~~hRke~d~~k 159 (239)
T PF13105_consen 134 LLLVGGLILGGLLAMLIHRKEKDNNK 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccch
Confidence 34568999999999888776665443
No 27
>COG1289 Predicted membrane protein [Function unknown]
Probab=26.04 E-value=4.9e+02 Score=27.79 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCccccccccccC
Q 019663 287 NWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRA 325 (337)
Q Consensus 287 ~~gHLgG~l~G~l~g~ll~~~~~~~~~~~~~r~~f~~~~ 325 (337)
...-+.|.++|.+.++++.|.++..+.++..++..+...
T Consensus 481 ~~d~~iG~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~ 519 (674)
T COG1289 481 FLDTLLGSLIALALAFLVWPLWRPRRLRRALRRALRALR 519 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 446678999999999989999998888777777555443
No 28
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=25.46 E-value=3e+02 Score=27.73 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhH
Q 019663 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR 227 (337)
Q Consensus 184 ~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l 227 (337)
-..++.-+++-..+|..-|+ +|++..+.+-++..+++++.+.+
T Consensus 125 s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~ 167 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAF 167 (521)
T ss_pred HHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777788887877 99999888777777777665544
No 29
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.41 E-value=2.8e+02 Score=22.39 Aligned_cols=42 Identities=2% Similarity=-0.016 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHh
Q 019663 185 AHLMVNCYSLNSIGPTMEKICGP-RRYLGVYFSSAIASSAMSY 226 (337)
Q Consensus 185 ~HLl~N~~~L~~~G~~lE~~~G~-~~fl~lyl~sgi~g~l~s~ 226 (337)
++++.-.+.-..+|..+.+.+|+ ..+...+++.|++.++...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45566677778889999999886 3455566677777666654
No 30
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=23.42 E-value=3.3e+02 Score=28.06 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHH
Q 019663 196 SIGPTMEKICGPRRYLGVYFSSAIA 220 (337)
Q Consensus 196 ~~G~~lE~~~G~~~fl~lyl~sgi~ 220 (337)
.+|...-+.+|...++.+.+.+.+.
T Consensus 164 ~v~~saak~f~~np~lg~~ig~~L~ 188 (472)
T PRK09796 164 MVAASAAIKFKTNMSLAIAIAGVLV 188 (472)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4566677888999988888777765
No 31
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=23.24 E-value=4.9e+02 Score=22.52 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=30.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccCch
Q 019663 283 KGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPI 327 (337)
Q Consensus 283 ~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~~~~~~r~~f~~~~~~ 327 (337)
....++=-+.+++.|.++++.+.+.-+.+.+ |++-..+++..+
T Consensus 53 ~~~~~~~~l~A~~~G~lFs~~Li~ts~fEvr--d~~Iy~krSkaF 95 (148)
T PF07301_consen 53 FRPPWLEVLEAFLVGALFSYPLIKTSKFEVR--DGQIYLKRSKAF 95 (148)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhceEEEE--CCeEEEeccccH
Confidence 3667777788999999999998877777655 555555555444
No 32
>PF09858 DUF2085: Predicted membrane protein (DUF2085); InterPro: IPR019206 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.87 E-value=3.9e+02 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 019663 284 GIDNWGHVGGLLGGAAISWL 303 (337)
Q Consensus 284 ~vs~~gHLgG~l~G~l~g~l 303 (337)
+.+..=-+.|++.|+.++++
T Consensus 73 s~N~lR~iTG~l~G~~~~~~ 92 (93)
T PF09858_consen 73 SNNLLRLITGLLFGLGLGLF 92 (93)
T ss_pred CCChhHHHhhHHHHhHHhee
Confidence 34445567788888877653
No 33
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.27 E-value=9.7e+02 Score=25.53 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHh
Q 019663 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228 (337)
Q Consensus 186 HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~ 228 (337)
..+.+....-++|+ +.+.+|++.++..-.+.++.|.++....
T Consensus 87 ~~l~~av~~~~~G~-LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 87 WTLASAVSFPFVGR-LSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHhhHH-HHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 45566666666766 6699999999888888888888775543
No 34
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.42 E-value=4.5e+02 Score=20.99 Aligned_cols=13 Identities=38% Similarity=0.337 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 019663 291 VGGLLGGAAISWL 303 (337)
Q Consensus 291 LgG~l~G~l~g~l 303 (337)
..|.++|+...-+
T Consensus 65 ~aG~laGlAaTGL 77 (93)
T PF06946_consen 65 WAGGLAGLAATGL 77 (93)
T ss_pred HHHHHhhhhhhhH
Confidence 4566777666544
No 35
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=20.28 E-value=4.6e+02 Score=21.06 Aligned_cols=74 Identities=15% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCc-----hhHHHHHHHHHHHHHHHHHHhcccccc
Q 019663 238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKG-----IDNWGHVGGLLGGAAISWLLGPALKYE 311 (337)
Q Consensus 238 GaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~-----vs~~gHLgG~l~G~l~g~ll~~~~~~~ 311 (337)
.+-+.++.......+...+....................+..+..+. .|......|++.|+++...+.+.++||
T Consensus 55 ~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~Q~~~~~r~~d~~Dv~~n~~G~~lG~~l~~~~~~~~~r~ 133 (133)
T PF04892_consen 55 IGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLFSLFIELIQLFLPGRSFDIDDVLANTLGALLGYLLYRLIRKRWQRK 133 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Done!