Query 019663
Match_columns 337
No_of_seqs 153 out of 1404
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr9_A Protein GLPG homolog; i 100.0 1.8E-29 6.1E-34 226.1 13.0 184 128-311 6-190 (196)
2 2xov_A Rhomboid protease GLPG; 100.0 3.3E-28 1.1E-32 215.2 20.3 175 129-306 2-180 (181)
3 2hfr_A Fowlicidin-3, cathelici 12.0 63 0.0022 18.5 0.5 21 22-42 6-26 (27)
4 3vr8_C Cytochrome B-large subu 9.8 4.2E+02 0.014 22.6 5.3 20 172-191 122-143 (188)
5 2gfp_A EMRD, multidrug resista 9.0 9.1E+02 0.031 20.9 8.8 36 188-224 46-81 (375)
6 1u7g_A Probable ammonium trans 8.2 9.4E+02 0.032 22.6 7.6 24 287-310 165-188 (385)
7 3arc_J Photosystem II reaction 7.3 1.5E+02 0.0052 18.9 1.0 16 19-34 4-19 (40)
8 3qe7_A Uracil permease; uracil 5.0 9.3E+02 0.032 22.8 5.7 69 235-305 336-407 (429)
9 4aps_A DI-OR tripeptide H+ sym 4.9 1.6E+03 0.056 20.0 15.1 39 187-225 64-102 (491)
10 2b2h_A AMT-1, ammonium transpo 4.5 5.7E+02 0.02 24.3 3.7 24 287-310 154-177 (399)
No 1
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.96 E-value=1.8e-29 Score=226.11 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=137.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 019663 128 FIGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG 206 (337)
Q Consensus 128 ~~~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G 206 (337)
.+.+|+|..++++|+++|+++....+ ...++....++.+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G 85 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG 85 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45578999999999999999877643 34455555555567899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchh
Q 019663 207 PRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286 (337)
Q Consensus 207 ~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs 286 (337)
+++++.+|+.+++.|++.++++.+...+|+||++||++++..+.....+..+..+..........++..+......+++|
T Consensus 86 ~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (196)
T 2nr9_A 86 SVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMG 165 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999887767999999999999976654322222211111111011111111211111234899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 019663 287 NWGHVGGLLGGAAISWLLGPALKYE 311 (337)
Q Consensus 287 ~~gHLgG~l~G~l~g~ll~~~~~~~ 311 (337)
+.||++|+++|+++++.+.++.+++
T Consensus 166 ~~aHlgG~l~G~l~~~~~~~~~~~~ 190 (196)
T 2nr9_A 166 NAAHISGLIVGLIWGFIDSKLRKNS 190 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999887654433
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=3.3e-28 Score=215.20 Aligned_cols=175 Identities=23% Similarity=0.262 Sum_probs=136.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhch
Q 019663 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (337)
Q Consensus 129 ~~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~ 207 (337)
+.+|+|..++++|+++|+++....+ ...++....++.+.++||||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4578999999999999999877543 344555555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhc---cCc
Q 019663 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL---IKG 284 (337)
Q Consensus 208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l---~~~ 284 (337)
++++.+|+.+++.+++.++++.+...+|+||+++|++++..+.....++...... . ......+..++.++. .++
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~~ 158 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQ--R-GLIIFALIWIVAGWFDLFGMS 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCC--H-HHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceeeeH--H-HHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999887767999999999999987653322222111111 1 111222233334433 358
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 019663 285 IDNWGHVGGLLGGAAISWLLGP 306 (337)
Q Consensus 285 vs~~gHLgG~l~G~l~g~ll~~ 306 (337)
+|+.+|++|+++|+++++.+++
T Consensus 159 v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 159 MANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998865
No 3
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=12.01 E-value=63 Score=18.49 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=16.4
Q ss_pred CCcchhhhhhhhcchhhhhhh
Q 019663 22 RPPLNLITTTAKHSLSVSLSR 42 (337)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (337)
-.|..+.+++|+..+-.+.||
T Consensus 6 ~vpvaintvaaginlykairr 26 (27)
T 2hfr_A 6 LVPVAINTVAAGINLYKAIRR 26 (27)
T ss_dssp SSSSHHHHHHHHHTSTTTTTC
T ss_pred cCcceEEEeehhhhHHHHHhc
Confidence 346778888999988887776
No 4
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=9.83 E-value=4.2e+02 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=12.7
Q ss_pred chheehhccc--CCHHHHHHHH
Q 019663 172 WRLATSAFLH--ANIAHLMVNC 191 (337)
Q Consensus 172 WRL~Ts~FlH--~~~~HLl~N~ 191 (337)
|-+..+.+.| .|+-||+.++
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3444556666 5788887774
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=9.05 E-value=9.1e+02 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 019663 188 MVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224 (337)
Q Consensus 188 l~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~ 224 (337)
+.+++.-...|. +-+++|+++.+.+-......+.+.
T Consensus 46 ~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 46 LTYGVSQLFYGP-ISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHTTHHH-HHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCchhHHHHHHHHHHHHHH
Confidence 334444445555 446788888766555444444443
No 6
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=8.23 E-value=9.4e+02 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 019663 287 NWGHVGGLLGGAAISWLLGPALKY 310 (337)
Q Consensus 287 ~~gHLgG~l~G~l~g~ll~~~~~~ 310 (337)
..-|+.|...|++.++.+.||..+
T Consensus 165 ~vVH~~gG~aaL~~a~~LG~R~g~ 188 (385)
T 1u7g_A 165 TVVHINAAIAGLVGAYLIGKRVGF 188 (385)
T ss_dssp TTTHHHHHHHHHHHHHHSCCCCCT
T ss_pred eEEEecchHHHHHHHHHhcCCCCC
Confidence 345999999999999999988754
No 7
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=7.27 E-value=1.5e+02 Score=18.89 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.1
Q ss_pred ccCCCcchhhhhhhhc
Q 019663 19 WLTRPPLNLITTTAKH 34 (337)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (337)
..++-|+-+|+|+++.
T Consensus 4 ~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 4 EGGRIPLWIVATVAGM 19 (40)
T ss_dssp CTTSSCHHHHHHHHHH
T ss_pred CcCcccEEeeeeehhh
Confidence 3578899999999886
No 8
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=4.99 E-value=9.3e+02 Score=22.80 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhc--c-CchhHHHHHHHHHHHHHHHHHHh
Q 019663 235 GASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL--I-KGIDNWGHVGGLLGGAAISWLLG 305 (337)
Q Consensus 235 GaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l--~-~~vs~~gHLgG~l~G~l~g~ll~ 305 (337)
|+.-++||.+....+.....++.-....+.+ +...+.+.+-++.. + +.....|-..|.+.++++-.++.
T Consensus 336 g~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~--~i~~~~l~~G~g~~~~~~~~~~~~gi~~~~~~ai~ln~~l~ 407 (429)
T 3qe7_A 336 GVSLLLYGVIGASGIRVLIESKVDYNKAQNL--ILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFK 407 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTSHHHH--HHHHHHHHHHHHCCCCCSSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchh--HHHHHHHHHHHHHHHHhhhhhccCcHHHHHHHHHHHHHHhc
Confidence 5556667777777665552222111111111 11111222222221 1 23344455667777777766664
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=4.93 E-value=1.6e+03 Score=20.03 Aligned_cols=39 Identities=13% Similarity=-0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 019663 187 LMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225 (337)
Q Consensus 187 Ll~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s 225 (337)
.+.+++.-...|...++.+|+++.+.+-.+...++.+..
T Consensus 64 ~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 64 ASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 344455555666655443899998776665555555543
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=4.53 E-value=5.7e+02 Score=24.32 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 019663 287 NWGHVGGLLGGAAISWLLGPALKY 310 (337)
Q Consensus 287 ~~gHLgG~l~G~l~g~ll~~~~~~ 310 (337)
..-|+.|...|++.++.+.||..+
T Consensus 154 ~vVH~~gG~~aL~~a~~LG~R~g~ 177 (399)
T 2b2h_A 154 MVVHISSGFAALAVAMTIGKRAGF 177 (399)
T ss_dssp TTTHHHHHHHHHHHHHHHCCCTTT
T ss_pred eEEEechhHHHHHHHHHcCCCCCC
Confidence 345999999999999999998754
Done!