BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019664
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 13/285 (4%)
Query: 56 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
NPID CWR D NW++NR +LADCA+GFG + +GG+ G Y VT D + VNP PGTLRY
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60
Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHG 174
+++ LWIIF+++M I+LK L + KTIDGRGA VH+ GGPC+ ++ V+++I+H
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 175 LNIHDCKKG--GNAMVRDS----PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL 228
L+IH C G+ +V +S P H DGD +++ T+ W+DH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH 288
+D GST ITISNN +H KVMLLGH DTY DK+M+VT+AFN FG QR+PR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 289 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
G HV NN+Y W +YAIGGS+NPTI S+GN F AP ++ KEV+
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVT 280
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 44/268 (16%)
Query: 75 LADCAIGFG--------KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWII 126
L D +GF + VGG G I V + + G +Y ++ D I+
Sbjct: 2 LNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEELEKYTTAEG--KYVIVVDGT--IV 57
Query: 127 FARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNA 186
F K E+ + S KTI G + + GG + I+ N+II ++
Sbjct: 58 F------EPKREIKVLSDKTIVGINDAKIVGGG--LVIKDAQNVIIRNIHFEGF------ 103
Query: 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246
+ D PR + D D +++ HIW+DH + N +DG VD S IT+S N
Sbjct: 104 YMEDDPRGKKY----DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFV 159
Query: 247 HHDKVMLLGHSDTYTQDKNMQ---VTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH--- 300
HDKV L+G SD ++ Q VT N+F + L+QR+PR R G HV NN Y+
Sbjct: 160 DHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYF-KNLIQRMPRIRFGMAHVFNNFYSMGLR 218
Query: 301 -------WEMYAIGGSANPTINSQGNRF 321
+ +Y + + ++ +GN F
Sbjct: 219 TGVSGNVFPIYGVASAMGAKVHVEGNYF 246
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDY------- 298
HDK + G SD+ T D +++T+ N + + +VQR PR R G HV NN Y
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 299 THWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
++ YA G + I +Q N P + +K +S
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDY------- 298
HDK + G SD+ T D +++T+ N + + +VQ+ PR R G HV NN Y
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 299 THWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
++ YA G + I +Q N P + +K +S
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 25/146 (17%)
Query: 201 SDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNN 243
S+ D +SI G +HIW+DH + ++ D DG +D + S ITIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 244 FMTHHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWE 302
T+HDKV L+G SD+ D +++VT+ N++ + + QR+PR R G H+ NN Y
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQVHIYNNYYEFSN 305
Query: 303 M------YAIGGSANPTINSQGNRFA 322
+ YA G I +Q N F+
Sbjct: 306 LADYDFQYAWGVGVFSQIYAQNNYFS 331
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 32/230 (13%)
Query: 129 RDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMV 188
++ R+ ++ N+ TI G G + + GG I+ N+II + D
Sbjct: 115 KNQKARVMVDIPANT--TIVGSGTNAKVVGG-NFQIK-SDNVIIRNIEFQDAYDYFPQWD 170
Query: 189 RDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDA 231
+ W S D ++I GGTHIW+DHC+ ++ DG DA
Sbjct: 171 PTAGSSGNW--ASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDA 228
Query: 232 IHGSTAITISNNFMTHHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPRCRHGY 290
+G+ IT+S N+ HD + G SD+ T D +++T+ N + + +VQR PR R G
Sbjct: 229 SNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQ 287
Query: 291 FHVVNNDYTHWEM-------YAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
HV NN Y YA G + I +Q N P + +K +S
Sbjct: 288 VHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 337
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEM-- 303
HDK + G SD+ T D +++T+ N + + +VQ PR R G HV NN Y
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNNYYEGSTSSS 302
Query: 304 -----YAIGGSANPTINSQGNRFAAPDRAFSKEVS 333
YA G + I +Q N P + +K +S
Sbjct: 303 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 337
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 25/146 (17%)
Query: 210 GGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMTHHDKVM 252
G H+W+DH ++S+ + DG +D GS +TISN+ + HDK M
Sbjct: 151 GAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTM 210
Query: 253 LLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNN-------DYTHWEMY 304
L+GHSD+ +QDK FN+ + +R PR R+G H NN D + Y
Sbjct: 211 LIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 305 AIGGSANPTINSQGNRFAAPDRAFSK 330
+ G + ++ S+GN F + + SK
Sbjct: 271 SFGIGTSGSVLSEGNSFTIANLSASK 296
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 196 GWRTVSDGDGVSIFGGTH-IWVDHCSLSNCD-----------------DGLVDAIHGSTA 237
GW ++ D ++I G H +W+DH ++S+ + DG +D GS
Sbjct: 138 GWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDY 195
Query: 238 ITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNN 296
+TISN+ + HDK ML+GH+DT + QDK FN+ + +R PR R+G H NN
Sbjct: 196 VTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255
Query: 297 -------DYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSK 330
D + Y+ G + ++ S+GN F + + SK
Sbjct: 256 VFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASK 296
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 56/267 (20%)
Query: 84 KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNS 143
K A+ G D ++ G D+ K Y D+ + + ++ + S
Sbjct: 37 KKALNGTDSSAKIIKVTGPIDISGGKA----YTSFDDQ------------KARSQISIPS 80
Query: 144 FKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF----GWRT 199
TI G G++ G + I+ V N+I+ L I D H+ GW
Sbjct: 81 NTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIE--------TPVDVAPHYESGDGWN- 130
Query: 200 VSDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISN 242
++ D I T++WVDH ++S+ DG +D GS +TIS
Sbjct: 131 -AEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISY 189
Query: 243 NFMTHHDKVMLLGHSDTYTQDKNMQVTIAF-NHFGEGLVQRIPRCRHGYFHVVNNDY--- 298
+ HDK +L+GHSD+ + ++ + F N+ + + +R PR R G H NN Y
Sbjct: 190 SRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGD 249
Query: 299 ----THWEMYAIGGSANPTINSQGNRF 321
+ +Y+ G + +I S+ N F
Sbjct: 250 VKHSVYPYLYSFGLGTSGSILSESNSF 276
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIPRCRHGYFHVVNNDYTH 300
F E + R+P R G H+ NN + +
Sbjct: 200 RF-ENVESRVPLQRRGLSHIYNNYFNN 225
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIPRCRHGYFHVVNNDYTH 300
F E + R+P R G H+ NN + +
Sbjct: 200 RF-ENVESRVPLQRFGLSHIYNNYFNN 225
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIPRCRHGYFHVVNNDYTH 300
F E + R+P R G H+ NN + +
Sbjct: 200 RF-ENVESRVPLQRFGLSHIYNNYFNN 225
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218
G I + NIII ++IH ++G + V+D ++W+DH
Sbjct: 94 GIGIRLSNAHNIIIQNVSIHHVREGEGTAIE----------VTDDS-------KNVWIDH 136
Query: 219 CSL---------SNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVT 269
S+ DGLVD + IT+S N +H K ML+GH+D + + ++T
Sbjct: 137 NEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD-KIT 195
Query: 270 IAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 321
N+F L R+P R+ H+ NN + AI + + N F
Sbjct: 196 YHHNYF-NNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYF 246
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 202 DGDGVSIFGGTHIWVDHCSL----SNCD---------DGLVDAIHGSTAITISNNFMTHH 248
DGD + + ++WVDH L CD + VD S +T+S N++
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 249 DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH 300
KV L G S + D +T N++ + + R+P R G H NN YT+
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNARLPLQRGGLVHAYNNLYTN 236
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 202 DGDGVSIFGGTHIWVDHCSL----SNCD---------DGLVDAIHGSTAITISNNFMTHH 248
DGD + + ++WVDH L CD + VD S +T+S N++
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 249 DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH 300
KV L G S + D +T N++ + + ++P R G H NN YT+
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNAKLPLQRGGLVHAYNNLYTN 236
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 139 LIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198
+ +NS K+I G+G I G + N+II + + D +P++
Sbjct: 104 ITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDI----------NPKY---- 149
Query: 199 TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTA---ITISNNFMTHHD--KVML 253
V GD +++ +W+DH + + G + G++A +TIS + +
Sbjct: 150 -VWGGDAITVDDSDLVWIDHVTTARI--GRQHIVLGTSADNRVTISYSLIDGRSDYSATC 206
Query: 254 LGHS--DTYTQDKNMQVTIAFNHFGEGLVQRIPRCR-HGYFHVVNNDYTHWEMYAIGGSA 310
GH Y N VT+ N+F L R+P+ + + H VNN + +++ +A
Sbjct: 207 NGHHYWGVYLDGSNDMVTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGT 265
Query: 311 NPTINSQGNRF 321
+ ++GN F
Sbjct: 266 GGYVLAEGNVF 276
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 147 IDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG-WRTVSDGD 204
I G ++ I G GP ++ + ++I++G + G M+R P + V +
Sbjct: 151 IKGLMTNLIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFCPSCLNVFNNVQENK 210
Query: 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSD 258
SIF + D +L+ + L+ +HG I ISN +T + K + HSD
Sbjct: 211 DTSIFSRRAYFAD-PALTLMHE-LIHVLHGLYGIKISNLPITPNTKEFFMQHSD 262
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP D W + + R LA C +G AVGGR+ TD
Sbjct: 36 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 93
Query: 104 DVVNP 108
D NP
Sbjct: 94 DCYNP 98
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP D W + + R LA C +G AVGGR+ TD
Sbjct: 35 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 104 DVVNP 108
D NP
Sbjct: 93 DCYNP 97
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 29 RQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 86
Query: 104 DVVNP 108
D NP
Sbjct: 87 DCYNP 91
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 28 RQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 85
Query: 104 DVVNP 108
D NP
Sbjct: 86 DCYNP 90
>pdb|2HKF|L Chain L, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|L Chain L, Crystal Structure Of The Fab M75
Length = 219
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 285 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFA-APDR 326
R H N Y HW + G S N I NRF+ PDR
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPNLLIYKVSNRFSGVPDR 66
>pdb|3UO1|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 218
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 285 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFA-APDR 326
R H N Y HW + G S N I NRF+ PDR
Sbjct: 24 RSSQSLVHSNGNTYLHWYLQKPGQSPNLLIYKVSNRFSGVPDR 66
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 35 RQSLSYLE--AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 104 DVVNP 108
D NP
Sbjct: 93 DCYNP 97
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 254 LGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEM 303
L HS YT D N+ V++ GEG+ Q CR + H+ +W M
Sbjct: 289 LCHSQPYTFDINLSVSLK----GEGMSQAATICRSNFKHM------YWTM 328
>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|2HZY|A Chain A, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
pdb|2HZY|B Chain B, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
Length = 421
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 254 LGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEM 303
L HS YT D N+ V++ GEG+ Q CR + H+ +W M
Sbjct: 289 LCHSQPYTFDINLSVSLK----GEGMSQAATICRSNFKHM------YWTM 328
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 254 LGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEM 303
L HS YT D N+ V++ GEG+ Q CR + H+ +W M
Sbjct: 287 LCHSQPYTFDINLSVSLK----GEGMSQAATICRSNFKHM------YWTM 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,195,939
Number of Sequences: 62578
Number of extensions: 504101
Number of successful extensions: 1081
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 31
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)