Query 019664
Match_columns 337
No_of_seqs 277 out of 936
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.5E-54 3.3E-59 411.2 22.4 216 84-327 46-279 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 7.9E-54 1.7E-58 390.5 13.7 191 121-321 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1E-49 2.2E-54 361.0 21.6 171 137-324 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.8 3.6E-07 7.9E-12 89.1 19.1 138 113-255 1-158 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 4.3E-06 9.3E-11 84.7 14.1 184 112-300 6-234 (425)
6 PF13229 Beta_helix: Right han 98.1 3.3E-05 7.2E-10 64.7 10.8 133 161-325 2-138 (158)
7 PLN02218 polygalacturonase ADP 98.0 0.00028 6.1E-09 72.0 16.8 124 161-305 217-344 (431)
8 PLN02188 polygalacturonase/gly 97.9 0.00043 9.4E-09 70.1 16.4 107 159-286 178-285 (404)
9 PLN02155 polygalacturonase 97.8 0.00061 1.3E-08 68.8 14.9 124 159-303 168-296 (394)
10 PLN02793 Probable polygalactur 97.8 0.0007 1.5E-08 69.4 15.5 107 160-287 201-308 (443)
11 PLN03003 Probable polygalactur 97.8 0.0007 1.5E-08 69.6 15.3 99 201-303 186-288 (456)
12 TIGR03805 beta_helix_1 paralle 97.7 0.0013 2.9E-08 64.3 16.3 173 142-325 62-284 (314)
13 PF00295 Glyco_hydro_28: Glyco 97.7 0.00048 1E-08 67.5 12.8 150 119-303 89-242 (326)
14 TIGR03808 RR_plus_rpt_1 twin-a 97.6 0.0038 8.1E-08 64.0 17.4 115 112-246 56-176 (455)
15 PF13229 Beta_helix: Right han 97.6 0.0011 2.4E-08 55.4 11.3 131 159-321 23-158 (158)
16 PLN03010 polygalacturonase 97.5 0.0053 1.2E-07 62.4 17.7 100 201-304 205-308 (409)
17 PLN02218 polygalacturonase ADP 97.5 0.0058 1.3E-07 62.5 17.8 87 161-277 194-285 (431)
18 PF12708 Pectate_lyase_3: Pect 97.5 0.0027 5.9E-08 56.7 13.3 152 113-280 21-221 (225)
19 PF05048 NosD: Periplasmic cop 97.5 0.0053 1.2E-07 56.5 15.1 108 160-300 58-167 (236)
20 PF01696 Adeno_E1B_55K: Adenov 97.4 0.017 3.6E-07 58.4 18.9 175 113-326 57-242 (386)
21 PF05048 NosD: Periplasmic cop 97.4 0.0033 7.1E-08 57.9 13.0 132 159-324 35-168 (236)
22 PLN03003 Probable polygalactur 97.1 0.011 2.3E-07 61.0 14.1 119 122-276 104-230 (456)
23 PLN02155 polygalacturonase 97.0 0.018 3.8E-07 58.4 14.5 141 123-300 107-268 (394)
24 PLN03010 polygalacturonase 97.0 0.065 1.4E-06 54.6 18.6 87 161-275 159-250 (409)
25 PF00295 Glyco_hydro_28: Glyco 96.9 0.01 2.2E-07 58.2 12.0 108 139-276 62-184 (326)
26 PLN02197 pectinesterase 96.8 0.074 1.6E-06 56.6 17.3 153 65-246 244-443 (588)
27 smart00656 Amb_all Amb_all dom 96.7 0.049 1.1E-06 49.7 13.9 134 143-300 45-188 (190)
28 PLN02793 Probable polygalactur 96.7 0.048 1E-06 56.1 14.8 118 123-276 135-269 (443)
29 PF07602 DUF1565: Protein of u 96.7 0.12 2.6E-06 49.4 16.3 188 111-322 16-240 (246)
30 PLN02480 Probable pectinestera 96.5 0.068 1.5E-06 53.3 14.1 169 112-299 62-275 (343)
31 TIGR03808 RR_plus_rpt_1 twin-a 96.4 0.062 1.4E-06 55.3 13.7 158 144-323 121-332 (455)
32 PLN02188 polygalacturonase/gly 96.3 0.077 1.7E-06 54.0 13.2 118 123-276 114-247 (404)
33 PF00544 Pec_lyase_C: Pectate 95.8 0.091 2E-06 48.2 10.6 118 157-298 73-200 (200)
34 COG5434 PGU1 Endopygalactoruna 95.4 0.2 4.3E-06 52.9 12.4 103 160-286 262-375 (542)
35 PLN02176 putative pectinestera 95.1 0.72 1.6E-05 46.1 14.6 121 112-246 53-207 (340)
36 PLN02170 probable pectinestera 94.7 0.53 1.1E-05 49.6 12.9 166 112-299 239-450 (529)
37 PLN02506 putative pectinestera 94.4 1.1 2.3E-05 47.5 14.5 166 112-299 246-457 (537)
38 COG3420 NosD Nitrous oxidase a 94.3 0.9 1.9E-05 45.6 12.8 137 137-294 45-200 (408)
39 PLN02432 putative pectinestera 94.2 0.9 2E-05 44.5 12.8 164 112-299 25-228 (293)
40 PLN02416 probable pectinestera 93.6 0.99 2.2E-05 47.7 12.6 144 112-276 244-430 (541)
41 PLN02708 Probable pectinestera 93.5 2.2 4.7E-05 45.3 14.9 116 112-246 255-409 (553)
42 PLN02301 pectinesterase/pectin 93.4 1.1 2.4E-05 47.5 12.5 145 112-276 250-436 (548)
43 PLN02304 probable pectinestera 93.1 2.3 4.9E-05 43.2 13.7 121 112-246 89-246 (379)
44 PLN02933 Probable pectinestera 93.0 1.7 3.7E-05 45.9 13.2 145 112-276 232-418 (530)
45 PLN02314 pectinesterase 93.0 1.3 2.7E-05 47.4 12.4 167 112-299 292-507 (586)
46 PLN02916 pectinesterase family 93.0 1.8 4E-05 45.4 13.2 144 112-275 201-389 (502)
47 PLN02745 Putative pectinestera 93.0 1.8 4E-05 46.3 13.4 117 112-247 299-452 (596)
48 PLN02634 probable pectinestera 92.7 2.6 5.7E-05 42.4 13.4 122 112-247 70-234 (359)
49 PLN02217 probable pectinestera 92.5 1.9 4.1E-05 46.8 12.9 145 112-276 264-450 (670)
50 COG5434 PGU1 Endopygalactoruna 92.5 0.57 1.2E-05 49.5 8.8 133 120-275 236-395 (542)
51 PLN02484 probable pectinestera 92.5 2.2 4.8E-05 45.6 13.2 146 112-276 286-473 (587)
52 PLN02201 probable pectinestera 92.4 2.1 4.4E-05 45.2 12.8 117 112-247 220-373 (520)
53 PLN02488 probable pectinestera 92.1 2.4 5.1E-05 44.6 12.7 145 112-276 211-397 (509)
54 PLN02995 Probable pectinestera 92.1 2.2 4.7E-05 45.2 12.5 117 112-247 237-392 (539)
55 PLN02682 pectinesterase family 91.9 16 0.00034 37.1 20.3 172 112-300 84-304 (369)
56 PLN03043 Probable pectinestera 91.3 3.3 7.2E-05 43.8 12.9 145 112-276 237-426 (538)
57 PLN02990 Probable pectinestera 91.2 3.9 8.6E-05 43.6 13.3 145 112-276 273-460 (572)
58 COG3420 NosD Nitrous oxidase a 90.9 2.6 5.7E-05 42.4 10.9 94 139-248 100-193 (408)
59 PF14592 Chondroitinas_B: Chon 90.8 1.4 3E-05 45.4 9.2 115 201-326 182-324 (425)
60 PLN02713 Probable pectinestera 90.7 3.5 7.7E-05 43.9 12.5 145 112-276 264-453 (566)
61 PLN02468 putative pectinestera 90.3 3.5 7.6E-05 43.9 12.1 116 112-246 272-424 (565)
62 PLN02313 Pectinesterase/pectin 90.3 3.6 7.9E-05 44.0 12.2 145 112-276 289-475 (587)
63 PLN02671 pectinesterase 90.3 8.4 0.00018 38.9 14.1 120 112-246 73-237 (359)
64 PLN02773 pectinesterase 90.0 22 0.00047 35.4 21.1 167 112-299 19-238 (317)
65 PF01095 Pectinesterase: Pecti 88.7 4 8.6E-05 40.0 10.3 195 112-327 14-268 (298)
66 PLN02665 pectinesterase family 88.1 32 0.0007 34.9 20.0 122 112-246 82-238 (366)
67 PF08480 Disaggr_assoc: Disagg 85.6 4 8.7E-05 37.7 7.8 64 236-301 2-76 (198)
68 PF12708 Pectate_lyase_3: Pect 85.6 14 0.00031 32.7 11.4 29 203-231 112-140 (225)
69 PRK10531 acyl-CoA thioesterase 85.5 27 0.00058 36.1 14.5 53 165-230 203-256 (422)
70 PF08480 Disaggr_assoc: Disagg 82.7 26 0.00056 32.6 11.7 71 211-282 33-112 (198)
71 PF04431 Pec_lyase_N: Pectate 82.5 0.7 1.5E-05 34.6 1.3 19 23-41 22-40 (56)
72 COG3866 PelB Pectate lyase [Ca 81.8 6.2 0.00013 39.2 7.8 121 202-323 115-250 (345)
73 PLN02497 probable pectinestera 77.7 81 0.0017 31.6 19.6 123 112-246 46-201 (331)
74 TIGR03804 para_beta_helix para 75.5 4.5 9.6E-05 27.7 3.5 41 205-247 1-41 (44)
75 PF03211 Pectate_lyase: Pectat 67.6 50 0.0011 31.2 9.6 52 200-252 93-145 (215)
76 PF07602 DUF1565: Protein of u 53.7 58 0.0013 31.3 7.6 91 141-253 95-193 (246)
77 PF07822 Toxin_13: Neurotoxin 50.2 2 4.3E-05 31.3 -2.2 22 58-79 20-42 (55)
78 PF12541 DUF3737: Protein of u 48.6 1.7E+02 0.0038 28.6 9.9 30 267-300 195-224 (277)
79 TIGR03804 para_beta_helix para 39.1 75 0.0016 21.4 4.5 42 161-224 1-42 (44)
80 PRK10123 wcaM putative colanic 36.9 65 0.0014 32.2 5.2 53 166-229 266-318 (464)
81 PF10880 DUF2673: Protein of u 32.7 38 0.00082 25.7 2.2 26 10-35 8-33 (65)
82 PF12541 DUF3737: Protein of u 28.5 95 0.0021 30.4 4.7 15 165-179 16-30 (277)
83 PF01696 Adeno_E1B_55K: Adenov 25.4 4.4E+02 0.0096 27.1 9.0 86 162-255 139-227 (386)
84 PLN02698 Probable pectinestera 21.9 2.6E+02 0.0057 29.5 6.9 94 165-276 267-383 (497)
85 PF07172 GRP: Glycine rich pro 21.0 58 0.0013 26.8 1.5 10 22-31 19-28 (95)
86 PF11359 gpUL132: Glycoprotein 20.9 2.8E+02 0.006 26.4 6.1 38 114-157 146-183 (235)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-54 Score=411.23 Aligned_cols=216 Identities=34% Similarity=0.464 Sum_probs=189.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEeC------cceEeccCeEEeccCceEEEe
Q 019664 84 KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIA 157 (337)
Q Consensus 84 ~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~~~I~ 157 (337)
.+||||.||++++|++.+| |..++...+|.++|+-++|+|++. .+|.+.|||||.|.|++++|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 3799999999999999988 888899999996666667788876 467789999999999999999
Q ss_pred CCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEE-eCCceEEEEeeEeeC--------CCCCc
Q 019664 158 GGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGL 228 (337)
Q Consensus 158 gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI-~gs~nVWIDHcs~s~--------~~Dgl 228 (337)
|+||+|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||+
T Consensus 116 -g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 -GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred -eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 67999999999999999999864321 12599999 578999999999999 68999
Q ss_pred eeeeeCCceEEEEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCCcCCCccccCcEEEEEcCeeeCCcce--E
Q 019664 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMY--A 305 (337)
Q Consensus 229 iDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~~~R~Pr~R~G~~Hv~NN~y~~w~~y--a 305 (337)
+|+++++++||||||+|++|+|.+|+|.+|+. .+|+..+||+||||| +|+.||+||+|||++||+||||+....| |
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a 257 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA 257 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence 99999999999999999999999999999985 457889999999999 7999999999999999999999976544 5
Q ss_pred EecCCCceEEEEceEEECCCCC
Q 019664 306 IGGSANPTINSQGNRFAAPDRA 327 (337)
Q Consensus 306 igg~~~~~i~~egN~F~a~~~~ 327 (337)
++-...++|++|+|||+....+
T Consensus 258 ~~iG~~AkiyvE~NyF~~~~~~ 279 (345)
T COG3866 258 ITIGTSAKIYVENNYFENGSEG 279 (345)
T ss_pred EeeccceEEEEecceeccCCCC
Confidence 5444449999999999996544
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=7.9e-54 Score=390.48 Aligned_cols=191 Identities=41% Similarity=0.645 Sum_probs=160.6
Q ss_pred CCeEEEEeeceEEEeCcceEeccCeEEeccCceEEEeCCceEEEe-eeceEEEEeeEEEecccCCCccccCCCCCcCCcc
Q 019664 121 EPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQ-YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 199 (337)
Q Consensus 121 ~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~gG~gi~i~-~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~ 199 (337)
+|+ ||+++|+|+++.+|.+.|||||+|+|++++|. |+|+.+. +++|||||||+|+++. ++..|+..+...
T Consensus 1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 355 55667899999999999999999999999999 6788886 9999999999999841 111122222233
Q ss_pred ccCCCeEEEeCCceEEEEeeEeeCC--------CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEE
Q 019664 200 VSDGDGVSIFGGTHIWVDHCSLSNC--------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIA 271 (337)
Q Consensus 200 ~~dgDaIsI~gs~nVWIDHcs~s~~--------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih 271 (337)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++|+...|..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 4689999999999999999999999 99999999999999999999999999999999988877877999999
Q ss_pred eeeecCCCcCCCccccCcEEEEEcCeeeCCcceEEecCCCceEEEEceEE
Q 019664 272 FNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 321 (337)
Q Consensus 272 ~N~f~~~~~~R~Pr~R~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F 321 (337)
|||| .++.+||||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 589999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1e-49 Score=361.05 Aligned_cols=171 Identities=58% Similarity=0.907 Sum_probs=158.9
Q ss_pred cceEeccCeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEE
Q 019664 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWV 216 (337)
Q Consensus 137 ~~L~v~SnkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWI 216 (337)
.+|.|.|||||+|+|+++.|. |++|+++.++|||||||+|++..+. ++ .++|+|+++++++|||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578899999999999999998 6899999999999999999976442 11 4789999999999999
Q ss_pred EeeEeeCC---------CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCcccc
Q 019664 217 DHCSLSNC---------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR 287 (337)
Q Consensus 217 DHcs~s~~---------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R 287 (337)
|||+|+|. .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+|||||+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999887667899999999995 7999999999
Q ss_pred CcEEEEEcCeeeCCcceEEecCCCceEEEEceEEECC
Q 019664 288 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAP 324 (337)
Q Consensus 288 ~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~a~ 324 (337)
+|++|+|||||++|..|+++.+.++++++|+|||++.
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.82 E-value=3.6e-07 Score=89.12 Aligned_cols=138 Identities=17% Similarity=0.287 Sum_probs=76.5
Q ss_pred HHHhhhCCCCe-EEEEeeceEEEeCcceEec-cCeEEeccCce-EEEeC------CceEEEeeeceEEEEeeEEEecccC
Q 019664 113 LRYAVIQDEPL-WIIFARDMTIRLKEELIMN-SFKTIDGRGAS-VHIAG------GPCITIQYVTNIIIHGLNIHDCKKG 183 (337)
Q Consensus 113 Lr~av~~~~P~-~IvF~~~g~I~L~~~L~v~-SnkTI~G~ga~-~~I~g------G~gi~i~~a~NVIIrnL~i~~~~~~ 183 (337)
|.+|+.+.+|- +|++. .|+-++.+.|.+. +++||.|.|.. ..|.+ +-+|.+ .++||-|++++|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 34566555554 34343 4666666677775 77888877653 23321 223433 46666666666654311
Q ss_pred CCcc-ccCCCC------CcCC----ccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeee
Q 019664 184 GNAM-VRDSPR------HFGW----RTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVM 252 (337)
Q Consensus 184 ~~~~-i~~s~~------~~g~----r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~ 252 (337)
.+. ++.+.. ...| .....++||.+..++++-|.+|.++...|--|- ...|++++|++|.+.+-..+.
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy-v~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY-VGQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE-ECCCCCeEEECCEEccCcceE
Confidence 010 000000 0000 001346788888888888999988887763332 346788888888887544444
Q ss_pred eec
Q 019664 253 LLG 255 (337)
Q Consensus 253 LiG 255 (337)
.+-
T Consensus 156 ~i~ 158 (314)
T TIGR03805 156 EIE 158 (314)
T ss_pred EEE
Confidence 443
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.42 E-value=4.3e-06 Score=84.65 Aligned_cols=184 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred hHHHhhhCCCCeEEEEeeceEEEeCcceEe------ccCeEEecc-CceEEEeCCceEEEeeeceEEEEeeEEEecccCC
Q 019664 112 TLRYAVIQDEPLWIIFARDMTIRLKEELIM------NSFKTIDGR-GASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGG 184 (337)
Q Consensus 112 tLr~av~~~~P~~IvF~~~g~I~L~~~L~v------~SnkTI~G~-ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~ 184 (337)
+|..||.+-.|=--|+=.+|+-+ ..+|.+ ...+||..+ ...+.|.|..+|+|. ++.++|.+|.|++..+..
T Consensus 6 ~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCC
Confidence 48888876444322222345554 234443 345788876 456778877778875 699999999999754322
Q ss_pred CccccCC--CC-----Cc--------CCcc-ccCCCeEEE----eCCceEEEEeeEeeCC-CCCc-eeee-------eCC
Q 019664 185 NAMVRDS--PR-----HF--------GWRT-VSDGDGVSI----FGGTHIWVDHCSLSNC-DDGL-VDAI-------HGS 235 (337)
Q Consensus 185 ~~~i~~s--~~-----~~--------g~r~-~~dgDaIsI----~gs~nVWIDHcs~s~~-~Dgl-iDv~-------~gs 235 (337)
...+... .. |. .+.. ..+.+...+ --++|--||||+|..- ..|. +-+. .-.
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~ 163 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIA 163 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS----
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccc
Confidence 2221110 00 00 0000 011122233 1234445899999873 2232 2222 123
Q ss_pred ceEEEEcceecc-------cCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCcccc--CcEEEEEcCeeeC
Q 019664 236 TAITISNNFMTH-------HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR--HGYFHVVNNDYTH 300 (337)
Q Consensus 236 ~~VTISnn~f~~-------H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R--~G~~Hv~NN~y~~ 300 (337)
.+-+|.+|||.+ ...++.+|.|.....+. +.++.+|+| ++|.+-.=-+. -+.--+.||.|..
T Consensus 164 ~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s--~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 164 NYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDS--NTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ---EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES
T ss_pred cCceEEeccccccCCCCCCCceeEEEeccccccccc--ceeeecchh-hhcCCceeEEEeecCCceEeccEEEe
Confidence 577999999984 56788999876543333 789999999 67776633322 2333444554443
No 6
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.11 E-value=3.3e-05 Score=64.70 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=76.5
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEE
Q 019664 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (337)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 240 (337)
||.+....++.|++.+|+++ .++||.+.++..+.|+.|+|.+...|+. ..+..++++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEE
Confidence 56777888999999999853 4578888888888888899888545544 345588888
Q ss_pred EcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCcccc--CcEEEEEcCeeeCCcceEEec--CCCceEEE
Q 019664 241 SNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR--HGYFHVVNNDYTHWEMYAIGG--SANPTINS 316 (337)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R--~G~~Hv~NN~y~~w~~yaigg--~~~~~i~~ 316 (337)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++.. ...+++.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 888888876333333222 5677777774 3322222222 235677788777654443322 22457788
Q ss_pred EceEEECCC
Q 019664 317 QGNRFAAPD 325 (337)
Q Consensus 317 egN~F~a~~ 325 (337)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 888887654
No 7
>PLN02218 polygalacturonase ADPG
Probab=97.99 E-value=0.00028 Score=72.00 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=87.0
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEE
Q 019664 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (337)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 240 (337)
.+.+..++||.|+||+|.. |+ ++ ...|||-+.+++||.|.+|.++.+ |..|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~------~s---------pNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PA------DS---------PNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CC------CC---------CCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 4455678899999999873 21 11 367999999999999999999987 557778889999999
Q ss_pred EcceecccCeeeeecCCCccc-CCCcceEEEEeeeecCCCcCCCcccc---CcEEEEEcCeeeCCcceE
Q 019664 241 SNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQRIPRCR---HGYFHVVNNDYTHWEMYA 305 (337)
Q Consensus 241 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VTih~N~f~~~~~~R~Pr~R---~G~~Hv~NN~y~~w~~ya 305 (337)
++|.+.. ..++-+|+--.+. .+..-+|++.++.|. + ..+.=|+. .|.-.+-|=.|.+..|..
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~ 344 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS-G-TDNGVRIKTYQGGSGTASNIIFQNIQMEN 344 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe-c-CCcceEEeecCCCCeEEEEEEEEeEEEEc
Confidence 9999953 3456788753332 334568999999994 4 34555554 233455555555554443
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.91 E-value=0.00043 Score=70.10 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceE
Q 019664 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (337)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (337)
-..+.+..++||.|++|+|.. |.. + ...|||-+..++||+|.+|.++...| .|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~--~~~------s---------pNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISA--PSD------S---------PNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeC--CCC------C---------CCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 456667789999999999974 210 1 35799999999999999999998877 66678899999
Q ss_pred EEEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCCcCCCccc
Q 019664 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRC 286 (337)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~~~R~Pr~ 286 (337)
+|+|+.+.. ..++-+|+--.+ .....-+|++.++.|. + .++.=|+
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~Giri 285 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRI 285 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEE
Confidence 999999853 345677873221 1233568999999994 4 3444444
No 9
>PLN02155 polygalacturonase
Probab=97.78 E-value=0.00061 Score=68.84 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=87.5
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceE
Q 019664 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (337)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (337)
-..+.+..++||.|+||+|.. |+. + ...|||-+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~------~---------~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN------S---------PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC------C---------CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 456667789999999999984 210 1 25699999999999999999998877 56678889999
Q ss_pred EEEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCCcCCCcccc----CcEEEEEcCeeeCCcc
Q 019664 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCR----HGYFHVVNNDYTHWEM 303 (337)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~~~R~Pr~R----~G~~Hv~NN~y~~w~~ 303 (337)
+|++|.+.. ..++-+|+--.+ +....-+|++.++.|. + ..+.=|+. .+...|-|=.|.+..|
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 999999975 335778885322 2334558999999994 4 34444552 1223455555555443
No 10
>PLN02793 Probable polygalacturonase
Probab=97.78 E-value=0.0007 Score=69.37 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=76.0
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEE
Q 019664 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (337)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VT 239 (337)
..+.+..++||.|++|+|.. |. + ....|||-+..++||+|.+|.+... |..|.++.++++|+
T Consensus 201 ~~i~~~~~~nv~i~~l~I~~--p~------~---------spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~ 262 (443)
T PLN02793 201 MHIAFTNCRRVTISGLKVIA--PA------T---------SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIK 262 (443)
T ss_pred eEEEEEccCcEEEEEEEEEC--CC------C---------CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEE
Confidence 34556678888888888874 21 0 1367999999999999999999866 55566777899999
Q ss_pred EEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCCcCCCcccc
Q 019664 240 ISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCR 287 (337)
Q Consensus 240 ISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~~~R~Pr~R 287 (337)
|+||.+.. ..+.-+|+--.+ .....-+|++.++.|. + ..+.=|++
T Consensus 263 I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 263 IRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 99999854 234668874222 2233568999999994 4 34555553
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.77 E-value=0.0007 Score=69.61 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred cCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCccc-CCCcceEEEEeeeecCCC
Q 019664 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGL 279 (337)
Q Consensus 201 ~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VTih~N~f~~~~ 279 (337)
...|||-+..++||+|.+|.++.+.| .|.++.++++|+|+++.+.. ..++-+|+--++. .+..-+|++.++.|. ++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tGDD-CIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATGDD-CIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-GT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecCCC-eEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-CC
Confidence 36799999999999999999987755 56678899999999999864 3456788653332 234568999999994 43
Q ss_pred cCCCcccc---CcEEEEEcCeeeCCcc
Q 019664 280 VQRIPRCR---HGYFHVVNNDYTHWEM 303 (337)
Q Consensus 280 ~~R~Pr~R---~G~~Hv~NN~y~~w~~ 303 (337)
.+.=|++ .|...+-|=.|++..|
T Consensus 263 -~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 263 -MNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred -CcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 4545654 2333444545555433
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.75 E-value=0.0013 Score=64.27 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=104.7
Q ss_pred ccCeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecc------------c--CCCccccCCCCCcCCccccCCCeEE
Q 019664 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK------------K--GGNAMVRDSPRHFGWRTVSDGDGVS 207 (337)
Q Consensus 142 ~SnkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~------------~--~~~~~i~~s~~~~g~r~~~dgDaIs 207 (337)
.+++||.|..-. =.++.||.++.++|++|+++++.... + .....|++..- + ...++||.
T Consensus 62 a~~VtI~~ltI~--~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i----~-g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVE--NTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYV----R-GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEE--cCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEE----E-CCCcccEE
Confidence 566676665321 02256778888888888888886210 0 00111111100 0 12335899
Q ss_pred EeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCC----
Q 019664 208 IFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI---- 283 (337)
Q Consensus 208 I~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~---- 283 (337)
+..++++.|-+|.+.....|+. ...|.++.|.+|.+.+-.-+.++-..+.-..-...++++++|.|.. .....
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~-n~~~n~~~~ 211 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD-NNTPNFAPA 211 (314)
T ss_pred ECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC-CCCCCCccc
Confidence 9999999999999998888766 3568999999999998666666633222111112389999999954 33221
Q ss_pred -------ccccCc-------EEEEEcCeeeCCcceEEec-----------C-------CCceEEEEceEEECCC
Q 019664 284 -------PRCRHG-------YFHVVNNDYTHWEMYAIGG-----------S-------ANPTINSQGNRFAAPD 325 (337)
Q Consensus 284 -------Pr~R~G-------~~Hv~NN~y~~w~~yaigg-----------~-------~~~~i~~egN~F~a~~ 325 (337)
|.- .| .+.++||.+.+-...++.- + ..-.+.+-+|.|.+..
T Consensus 212 gn~v~~~~~g-~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g 284 (314)
T TIGR03805 212 GSIVASVPAG-TGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGG 284 (314)
T ss_pred CCceecCCCC-cEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcceEEEccEeecCC
Confidence 111 12 3689999998754433320 1 1235677788886554
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.72 E-value=0.00048 Score=67.46 Aligned_cols=150 Identities=20% Similarity=0.213 Sum_probs=95.9
Q ss_pred CCCCeEEEEeeceEEEeCcceEeccCeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCc
Q 019664 119 QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (337)
Q Consensus 119 ~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r 198 (337)
...|+.+.|...-.+.++ ++||.- +| .+.+.+..++||.|++|+|+....
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~n--sp-----~w~~~~~~~~nv~i~~i~I~~~~~---------------- 138 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIRN--SP-----FWHIHINDCDNVTISNITINNPAN---------------- 138 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEES---S-----SESEEEESEEEEEEESEEEEEGGG----------------
T ss_pred ccccceeeeeeecceEEE-------eeEecC--CC-----eeEEEEEccCCeEEcceEEEecCC----------------
Confidence 356888888764323222 233322 22 567788899999999999996321
Q ss_pred cccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCccc-CCCcceEEEEeeeecC
Q 019664 199 TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGE 277 (337)
Q Consensus 199 ~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VTih~N~f~~ 277 (337)
....|||-+.+++||.|++|.+... |-.|.++.++.+|+|+||.|.. ..++-+|+.-... +...-+|+|.++.|.
T Consensus 139 -~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~- 214 (326)
T PF00295_consen 139 -SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII- 214 (326)
T ss_dssp -CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-
T ss_pred -CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-
Confidence 1367999999999999999999887 4456667777799999999974 3346677533221 112358999999994
Q ss_pred CCcCCCcccc---CcEEEEEcCeeeCCcc
Q 019664 278 GLVQRIPRCR---HGYFHVVNNDYTHWEM 303 (337)
Q Consensus 278 ~~~~R~Pr~R---~G~~Hv~NN~y~~w~~ 303 (337)
+ ..|.-|++ .+...|-|=.|++..+
T Consensus 215 ~-t~~gi~iKt~~~~~G~v~nI~f~ni~~ 242 (326)
T PF00295_consen 215 N-TDNGIRIKTWPGGGGYVSNITFENITM 242 (326)
T ss_dssp S-ESEEEEEEEETTTSEEEEEEEEEEEEE
T ss_pred c-cceEEEEEEecccceEEeceEEEEEEe
Confidence 4 35655553 1233344444444443
No 14
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.60 E-value=0.0038 Score=64.00 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=72.3
Q ss_pred hHHHhhhCCC-C-eEEEEeeceEEEeCcceEeccCeEEeccCceE--EEeCCceEE-EeeeceEEEEeeEEEecccCCCc
Q 019664 112 TLRYAVIQDE-P-LWIIFARDMTIRLKEELIMNSFKTIDGRGASV--HIAGGPCIT-IQYVTNIIIHGLNIHDCKKGGNA 186 (337)
Q Consensus 112 tLr~av~~~~-P-~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~--~I~gG~gi~-i~~a~NVIIrnL~i~~~~~~~~~ 186 (337)
.|+.|+.+-. | -.|++.. |+- +...|.+.+++||.|+.... .|.++.++. -..++||-|++++|++- +
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G--- 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--G--- 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--C---
Confidence 3788876422 2 2355543 222 23678889999999985442 355554444 35899999999999862 1
Q ss_pred cccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCC-CCceeeeeCCceEEEEcceec
Q 019664 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-DGLVDAIHGSTAITISNNFMT 246 (337)
Q Consensus 187 ~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~-DgliDv~~gs~~VTISnn~f~ 246 (337)
.......-+|.+.+++++-|.+|.|.... .|.. .+++. ..|++|.+.
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTIT 176 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEe
Confidence 11112345888888999999999998873 6654 23444 444444433
No 15
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.57 E-value=0.0011 Score=55.40 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=76.0
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceE
Q 019664 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (337)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (337)
+.||.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.++.+. ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 457788777888888888874 246788888899999999999888 33333 478899
Q ss_pred EEEcceecccCe-eeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccC-c--EEEEEcCeeeCCcceEEecCCCce-
Q 019664 239 TISNNFMTHHDK-VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-G--YFHVVNNDYTHWEMYAIGGSANPT- 313 (337)
Q Consensus 239 TISnn~f~~H~k-~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~-G--~~Hv~NN~y~~w~~yaigg~~~~~- 313 (337)
+|++|.|.+... ++.+.. ....+++.+|.|. +..+..=.+.. . .+-+.+|.+++-..+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999988665 444442 1126788899984 33322222221 2 456688888877778875444444
Q ss_pred EEEEceEE
Q 019664 314 INSQGNRF 321 (337)
Q Consensus 314 i~~egN~F 321 (337)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 78888876
No 16
>PLN03010 polygalacturonase
Probab=97.54 E-value=0.0053 Score=62.42 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=67.3
Q ss_pred cCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCcc-cCCCcceEEEEeeeecCCC
Q 019664 201 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 279 (337)
Q Consensus 201 ~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VTih~N~f~~~~ 279 (337)
...|||-+..++||+|.+|.+... |-.|.++.++++++|.++.... ..++-+|+--+. ..+..-+|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 367999999999999999999887 5566678888888888776652 234567764322 2234568999999994 3
Q ss_pred cCCCcccc---CcEEEEEcCeeeCCcce
Q 019664 280 VQRIPRCR---HGYFHVVNNDYTHWEMY 304 (337)
Q Consensus 280 ~~R~Pr~R---~G~~Hv~NN~y~~w~~y 304 (337)
.++.=|++ .|.-.|-|=.|++..|.
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m~ 308 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITLI 308 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEEe
Confidence 34444553 23344555556665443
No 17
>PLN02218 polygalacturonase ADPG
Probab=97.52 E-value=0.0058 Score=62.53 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=68.6
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeC-----CCCCceeeeeCC
Q 019664 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (337)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gs 235 (337)
-|++.+++|+.|++|++++. | .=.|.+..++||.|++.++.. -.|| || ...+
T Consensus 194 ~i~f~~~~nv~I~gitl~nS-p--------------------~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Id-i~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA-Q--------------------QIQISIEKCSNVQVSNVVVTAPADSPNTDG-IH-ITNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC-C--------------------CEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Ee-eccc
Confidence 36778999999999999963 1 125888999999999999876 3455 44 4578
Q ss_pred ceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecC
Q 019664 236 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGE 277 (337)
Q Consensus 236 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~ 277 (337)
++|+|++|.|..-+.+.-+.+.. .+|++.+++++.
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~ 285 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGP 285 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEEC
Confidence 99999999999988887777542 278888888853
No 18
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.49 E-value=0.0027 Score=56.68 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=78.5
Q ss_pred HHHhh--h-CCCCeEEEEeeceEEEeCcceEeccCeEEeccCceE-EEe---CC--------------------------
Q 019664 113 LRYAV--I-QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASV-HIA---GG-------------------------- 159 (337)
Q Consensus 113 Lr~av--~-~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~-~I~---gG-------------------------- 159 (337)
|..|+ . ..+..+|.|- .|+..+.+.|.+.|+++|.|.|... .+. ..
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 77887 2 3455666664 4788888889999999999976521 111 00
Q ss_pred -------------ceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCC-eEEEeCC-ceEEEEeeEeeCC
Q 019664 160 -------------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGD-GVSIFGG-THIWVDHCSLSNC 224 (337)
Q Consensus 160 -------------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgD-aIsI~gs-~nVWIDHcs~s~~ 224 (337)
.++.+..++|+.|+|++++++.. .+..-.....+... ..... ++.+.++ .++++..|.+..+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRII-GSTHVSGIFIDNGSNNVIVNNCIFNGG 176 (225)
T ss_dssp EEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEEE-CCEEEEEEEEESCEEEEEEECEEEESS
T ss_pred EEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcEe-ecccceeeeeccceeEEEECCccccCC
Confidence 11112235667777777765321 11100000000000 00001 3444432 3444566767777
Q ss_pred CCCceeeeeCCceEEEEcceecc-cCeeeeecCCCcccCCCcceEEEEeeeecCCCc
Q 019664 225 DDGLVDAIHGSTAITISNNFMTH-HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV 280 (337)
Q Consensus 225 ~DgliDv~~gs~~VTISnn~f~~-H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~ 280 (337)
.+| + ..++++++++||.|.. ......+-... ++++.+|.| ++|.
T Consensus 177 ~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 177 DNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTI-ENCD 221 (225)
T ss_dssp SCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEE-ESSS
T ss_pred Cce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEE-ECCc
Confidence 777 2 3445788999998886 44444333222 477888888 4553
No 19
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.45 E-value=0.0053 Score=56.55 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=76.5
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEE
Q 019664 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (337)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VT 239 (337)
.||.+..++++.|++-.|++ ...||.+..+.+..|..+.|+....|.. ..++...+
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~----------------------n~~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~ 113 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISN----------------------NGYGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNT 113 (236)
T ss_pred eEEEEEccCCCEEEeEEEEc----------------------cCCCEEEEcCCCcEEECCEecCCCceEE--EeeCCceE
Confidence 35566666666666666653 2378999988877999999999988664 46788899
Q ss_pred EEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCcc-cc-CcEEEEEcCeeeC
Q 019664 240 ISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR-CR-HGYFHVVNNDYTH 300 (337)
Q Consensus 240 ISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr-~R-~G~~Hv~NN~y~~ 300 (337)
|++|.|.+...++.+-.+. +.++.+|.|. ++..---. +. -..-.+++|.|.+
T Consensus 114 I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~-~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 114 ISNNTISNNGYGIYLSSSS--------NNTITGNTIS-NNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred EECcEEeCCCEEEEEEeCC--------CCEEECeEEe-CCCccceEEeccCCCCEEECCCccC
Confidence 9999999777777766553 6788999995 33222222 22 2457899999944
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.41 E-value=0.017 Score=58.36 Aligned_cols=175 Identities=14% Similarity=0.170 Sum_probs=126.8
Q ss_pred HHHhhhCCCCeEEEEeeceEEEeCcceEeccCeEEeccCceEEEeC--CceEEE---------eeeceEEEEeeEEEecc
Q 019664 113 LRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG--GPCITI---------QYVTNIIIHGLNIHDCK 181 (337)
Q Consensus 113 Lr~av~~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~g--G~gi~i---------~~a~NVIIrnL~i~~~~ 181 (337)
|-+|+.+-. -|..+-+-+-.+.+++.|.+--+|+|+||.+.|.+ +.+|.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 667765543 24555555667778999999999999999999853 555654 3568999999999731
Q ss_pred cCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeeeeecCCCccc
Q 019664 182 KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT 261 (337)
Q Consensus 182 ~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~ 261 (337)
..--++-+...+++.+.-|+|....-=.++.. ....|..|+|..-+|++. +.+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SRG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cCC----
Confidence 12357888899999999999998876666543 678899999999888863 222
Q ss_pred CCCcceEEEEeeeecCCCcCCCccccCcEEEEEcCeeeCCcceEEecCCCceEEEEceEEECCCC
Q 019664 262 QDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDR 326 (337)
Q Consensus 262 ~d~~~~VTih~N~f~~~~~~R~Pr~R~G~~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~a~~~ 326 (337)
+.++++.+|.| +.+.==. +..|.+++-+|...+-.-..+ ...+-.+.+|.|..+.+
T Consensus 187 ---~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEEEE--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 34788999999 5443222 346889999999987543333 22345778899987765
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.40 E-value=0.0033 Score=57.93 Aligned_cols=132 Identities=20% Similarity=0.180 Sum_probs=97.6
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceE
Q 019664 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (337)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (337)
..|+.+..+.++.|++.+|++. ..||.+.+++++-|..|.++.+..|.. ...+.+.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCc
Confidence 4466778899999999988742 467999999999999999999998876 4556656
Q ss_pred EEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccC-cEEEEEcCeeeCCcceEEe-cCCCceEEE
Q 019664 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-GYFHVVNNDYTHWEMYAIG-GSANPTINS 316 (337)
Q Consensus 239 TISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~-G~~Hv~NN~y~~w~~yaig-g~~~~~i~~ 316 (337)
+|++|.|.+...++++-.++ ..++..|.|. + ....-.+.. ....+.+|.+.+-..|+|. ......-.+
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~-~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I 160 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS--------NNTISNNTIS-N-NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI 160 (236)
T ss_pred EEECCEecCCCceEEEeeCC--------ceEEECcEEe-C-CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence 99999999877776665554 4688899884 3 333333333 4678889999877667776 444556778
Q ss_pred EceEEECC
Q 019664 317 QGNRFAAP 324 (337)
Q Consensus 317 egN~F~a~ 324 (337)
.+|+|.+.
T Consensus 161 ~~N~f~N~ 168 (236)
T PF05048_consen 161 YNNNFNNS 168 (236)
T ss_pred ECCCccCE
Confidence 88999443
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.10 E-value=0.011 Score=61.05 Aligned_cols=119 Identities=18% Similarity=0.325 Sum_probs=85.9
Q ss_pred CeEEEEeeceEEEeCcceEeccCeEEeccCceEEE---eCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCc
Q 019664 122 PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHI---AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (337)
Q Consensus 122 P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I---~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r 198 (337)
..||.|..- +.|.+...=||+|+|..--- ..-..|++..++|+.|++|++.+. |
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS-p---------------- 160 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS-P---------------- 160 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC-C----------------
Confidence 358888642 23555444589999853210 011256788999999999999864 1
Q ss_pred cccCCCeEEEeCCceEEEEeeEeeCC-----CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEee
Q 019664 199 TVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (337)
Q Consensus 199 ~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N 273 (337)
.=.|.+.+++||.|++.++... .|| || ...|++|+|++|.+..-+.+.-+++.. .+|++.++
T Consensus 161 ----~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-ID-i~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~ 227 (456)
T PLN03003 161 ----MAHIHISECNYVTISSLRINAPESSPNTDG-ID-VGASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGI 227 (456)
T ss_pred ----cEEEEEeccccEEEEEEEEeCCCCCCCCCc-Ee-ecCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEee
Confidence 1258888999999999999763 565 45 467899999999999988888877642 26788887
Q ss_pred eec
Q 019664 274 HFG 276 (337)
Q Consensus 274 ~f~ 276 (337)
.++
T Consensus 228 ~c~ 230 (456)
T PLN03003 228 DCG 230 (456)
T ss_pred EEE
Confidence 774
No 23
>PLN02155 polygalacturonase
Probab=97.00 E-value=0.018 Score=58.39 Aligned_cols=141 Identities=19% Similarity=0.305 Sum_probs=93.6
Q ss_pred eEEEEeeceEEEeCcceEeccCeEEeccCceEEEe--CC-------ceEEEeeeceEEEEeeEEEecccCCCccccCCCC
Q 019664 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GG-------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR 193 (337)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~--gG-------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~ 193 (337)
.||.|..- +.+.+.. =||+|||..---. .+ ..|.+..++||.|++|++++. |
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-p----------- 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-Q----------- 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-C-----------
Confidence 46766542 2344544 6899998642110 01 236788999999999999863 1
Q ss_pred CcCCccccCCCeEEEeCCceEEEEeeEeeCC-----CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceE
Q 019664 194 HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQV 268 (337)
Q Consensus 194 ~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~V 268 (337)
.=.+.+.+++||.|++.++..- .|| || ...+++|+|++|.|..-+.+..+++.. -+|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-id-i~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FH-VQFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCc-cc-cccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 1258888999999999999663 455 44 457999999999999988888887652 278
Q ss_pred EEEeeeecCCC------cCCCcc-ccCcEEEEEcCeeeC
Q 019664 269 TIAFNHFGEGL------VQRIPR-CRHGYFHVVNNDYTH 300 (337)
Q Consensus 269 Tih~N~f~~~~------~~R~Pr-~R~G~~Hv~NN~y~~ 300 (337)
++.++.++.+. ..+.|. -..-.+.|.|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 88887774321 111121 001246777888765
No 24
>PLN03010 polygalacturonase
Probab=97.00 E-value=0.065 Score=54.64 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=66.1
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeC-----CCCCceeeeeCC
Q 019664 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (337)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gs 235 (337)
-|++..++||.|++|++++. | .=.|.+.++++|.|++..+.. -.|| || ...+
T Consensus 159 ~l~~~~~~nv~v~gitl~ns-p--------------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iD-i~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS-P--------------------KNHISIKTCNYVAISKINILAPETSPNTDG-ID-ISYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC-C--------------------ceEEEEeccccEEEEEEEEeCCCCCCCCCc-ee-eecc
Confidence 47788999999999999863 1 124888899999999999875 3555 44 4578
Q ss_pred ceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeee
Q 019664 236 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHF 275 (337)
Q Consensus 236 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f 275 (337)
++|+|++|.+..-+.+.-+.+..+ ...|+...+..
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~ 250 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGP 250 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeEC
Confidence 999999999999998888876421 24555555544
No 25
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.95 E-value=0.01 Score=58.16 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=75.2
Q ss_pred eEeccCeEEeccCceEEE-eC---------CceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEE
Q 019664 139 LIMNSFKTIDGRGASVHI-AG---------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI 208 (337)
Q Consensus 139 L~v~SnkTI~G~ga~~~I-~g---------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI 208 (337)
+.+...=||+|+|..=.- .+ -..|.+..++|+.|++|++++. | .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-p--------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-P--------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES--S--------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-C--------------------eeEEEE
Confidence 334444588998862100 00 1236778999999999999963 1 115888
Q ss_pred eCCceEEEEeeEeeCC-----CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 209 FGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 209 ~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
..++||+|++.++... .||. | ..++++|+|.+|.+...+.+.-+.+... +|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d-~~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-D-IDSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-E-EESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-E-EEeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 8999999999999753 4664 4 3578999999999999888777765432 7899999985
No 26
>PLN02197 pectinesterase
Probab=96.76 E-value=0.074 Score=56.58 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=93.9
Q ss_pred CcccccC--ccccccCcccccCCCCCCCCCcE---EEEcCCCCCCCCCCCch---hHHHhhhC----CCCeEEEEeeceE
Q 019664 65 DPNWEKN--RQRLADCAIGFGKNAVGGRDGRI---YVVTDPGDYDVVNPKPG---TLRYAVIQ----DEPLWIIFARDMT 132 (337)
Q Consensus 65 ~~~w~~~--r~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~p~pG---tLr~av~~----~~P~~IvF~~~g~ 132 (337)
.|.|-.. |+-|+ +.+.|.++-||.++.+ ++|. .| +.| |+.+||.. +..++||+=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa--~d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA--KD------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc--CC------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 4888654 66664 3455667767766542 3332 12 444 78888853 3346667766776
Q ss_pred EEeCcceEe---ccCeEEeccCceEE-Ee--------CCce----EE-EeeeceEEEEeeEEEecccCCCccccCCCCCc
Q 019664 133 IRLKEELIM---NSFKTIDGRGASVH-IA--------GGPC----IT-IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF 195 (337)
Q Consensus 133 I~L~~~L~v---~SnkTI~G~ga~~~-I~--------gG~g----i~-i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~ 195 (337)
-+ +.+.| .+|+|+.|.|...+ |. +|.+ =+ ...+++++.+||.|++....
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 43 55655 47899999886543 32 1211 01 13689999999999974210
Q ss_pred CCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------CceeeeeCCceEEEEcceec
Q 019664 196 GWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMT 246 (337)
Q Consensus 196 g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gs~~VTISnn~f~ 246 (337)
.+.-|+.+. .++..-+.+|.|.-..| |.+|.+-|.-..-+++|.|.
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 122344444 46777788888876544 55666666667788888775
No 27
>smart00656 Amb_all Amb_all domain.
Probab=96.74 E-value=0.049 Score=49.67 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=81.8
Q ss_pred cCeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCe-EEEe-CCceEEEEeeE
Q 019664 143 SFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHCS 220 (337)
Q Consensus 143 SnkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDa-IsI~-gs~nVWIDHcs 220 (337)
.|++|.+..... ..++-+|.+..++||+|.+..|....+. +.. ....|+ +.+. ++.+|-|-.|.
T Consensus 45 rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~~-~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GFG-DDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cCC-CCCCCccEEECcccccEEEECce
Confidence 577777753321 1235688888999999999999864211 110 112343 4443 57788888888
Q ss_pred eeCCCCCceeeeeCC------ceEEEEcceecccC-eeeeecCCCcccCCCcceEEEEeeeecCCCcCCCcccc-CcEEE
Q 019664 221 LSNCDDGLVDAIHGS------TAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR-HGYFH 292 (337)
Q Consensus 221 ~s~~~DgliDv~~gs------~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R-~G~~H 292 (337)
|....-+.+--...+ -.||+.+|+|.+.. +..++.. . ++-+.+|+| .+..+-.--++ .+.+.
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~--------g-~~hv~NN~~-~n~~~~~~~~~~~~~v~ 180 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF--------G-YVHVYNNYY-TGWTSYAIGGRMGATIL 180 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC--------C-EEEEEeeEE-eCcccEeEecCCCcEEE
Confidence 765444444211111 26999999998743 3333322 1 678889999 45443322223 36899
Q ss_pred EEcCeeeC
Q 019664 293 VVNNDYTH 300 (337)
Q Consensus 293 v~NN~y~~ 300 (337)
+-||||.+
T Consensus 181 ~E~N~F~~ 188 (190)
T smart00656 181 SEGNYFEA 188 (190)
T ss_pred EECeEEEC
Confidence 99999986
No 28
>PLN02793 Probable polygalacturonase
Probab=96.67 E-value=0.048 Score=56.11 Aligned_cols=118 Identities=17% Similarity=0.286 Sum_probs=82.2
Q ss_pred eEEEEeeceEEEeCcceEeccCeEEeccCceEE-----EeC-------CceEEEeeeceEEEEeeEEEecccCCCccccC
Q 019664 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH-----IAG-------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 190 (337)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~-----I~g-------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~ 190 (337)
.||.|..- +.|.|...=||+|+|..-- ... -.-|.+.+++||.|++|++++. |
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS-p-------- 199 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS-Q-------- 199 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC-C--------
Confidence 36666431 2344444458888885321 010 1136778999999999999963 1
Q ss_pred CCCCcCCccccCCCeEEEeCCceEEEEeeEeeC-----CCCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCc
Q 019664 191 SPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKN 265 (337)
Q Consensus 191 s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~ 265 (337)
.=.+.+.+++||.|++.++.. -.||. | ...+++|+|++|.|..-+.+..+.++.
T Consensus 200 ------------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s~nV~I~n~~I~~gDDcIaik~~s------- 258 (443)
T PLN02793 200 ------------QMHIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISASRGVVIKDSIVRTGDDCISIVGNS------- 258 (443)
T ss_pred ------------CeEEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eeccceEEEEeCEEeCCCCeEEecCCc-------
Confidence 124778899999999999975 35554 4 467899999999999998888776432
Q ss_pred ceEEEEeeeec
Q 019664 266 MQVTIAFNHFG 276 (337)
Q Consensus 266 ~~VTih~N~f~ 276 (337)
.+|++.++.++
T Consensus 259 ~nI~I~n~~c~ 269 (443)
T PLN02793 259 SRIKIRNIACG 269 (443)
T ss_pred CCEEEEEeEEe
Confidence 27888888774
No 29
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.65 E-value=0.12 Score=49.43 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=110.0
Q ss_pred hhHHHhhhCCCCeEEEEeeceEEEeC----cceEeccCeEEeccCc-----eEEEeC--------Cc-------eEEEee
Q 019664 111 GTLRYAVIQDEPLWIIFARDMTIRLK----EELIMNSFKTIDGRGA-----SVHIAG--------GP-------CITIQY 166 (337)
Q Consensus 111 GtLr~av~~~~P~~IvF~~~g~I~L~----~~L~v~SnkTI~G~ga-----~~~I~g--------G~-------gi~i~~ 166 (337)
-||.+|+.+-.|-.+|.=..|+-+-. -+|.+.+.+||.|... .+.+.+ |. .++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 36888887655544444344555432 2477788888887533 122221 11 144556
Q ss_pred eceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCC-CCCceeeee----CCceEEEE
Q 019664 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-DDGLVDAIH----GSTAITIS 241 (337)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-~DgliDv~~----gs~~VTIS 241 (337)
+++..|++++|++-.+ ..+-||.|.++ +.-|..|+|+.+ .+|...... ....++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888889999886321 25678999877 788999999997 666543222 34567888
Q ss_pred cceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCc-----CCCccccCc-EEEEEcCeeeCCcceEEecC--CCce
Q 019664 242 NNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV-----QRIPRCRHG-YFHVVNNDYTHWEMYAIGGS--ANPT 313 (337)
Q Consensus 242 nn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~-----~R~Pr~R~G-~~Hv~NN~y~~w~~yaigg~--~~~~ 313 (337)
.|.+.....+.-+-.+. .. ....+-+|++.++.. ...|-+..+ .-.+-||.+.+...|.+--. ..-+
T Consensus 157 GN~~~~~~~Gi~i~~~~--~~---~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 157 GNSIYFNKTGISISDNA--AP---VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred cceEEecCcCeEEEccc--CC---ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 88777544332222111 11 112345666643211 111443321 23467899998888888653 3458
Q ss_pred EEEEceEEE
Q 019664 314 INSQGNRFA 322 (337)
Q Consensus 314 i~~egN~F~ 322 (337)
+++.||...
T Consensus 232 l~a~gN~ld 240 (246)
T PF07602_consen 232 LYAVGNQLD 240 (246)
T ss_pred EEEeCCccC
Confidence 899999875
No 30
>PLN02480 Probable pectinesterase
Probab=96.50 E-value=0.068 Score=53.34 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=97.2
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCce-EEEeC---------CceEEEeeeceEEEEe
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGAS-VHIAG---------GPCITIQYVTNIIIHG 174 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~-~~I~g---------G~gi~i~~a~NVIIrn 174 (337)
|+.+||.+ +..+++||=+.|+-+ +.|.| .+|+||.|.+.. ..|.+ +..++ ..+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvt-V~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFT-VEAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEE-EECCCEEEEe
Confidence 78888753 234566665666544 66766 578999998743 33432 22233 3689999999
Q ss_pred eEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCCCc-----------------eeeeeCCc
Q 019664 175 LNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGL-----------------VDAIHGST 236 (337)
Q Consensus 175 L~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~ 236 (337)
|+|++..+.+. ....++-|+.+. .++++-+.+|.|.-..|=| +|.+-|.-
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g 206 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRG 206 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEccce
Confidence 99998643111 001234566664 6789999999997765544 56666666
Q ss_pred eEEEEcceecccC------eeeeecCCCcccCCCcceEEEEeeeecCCC----cCCCccccCcEEEEEcCeee
Q 019664 237 AITISNNFMTHHD------KVMLLGHSDTYTQDKNMQVTIAFNHFGEGL----VQRIPRCRHGYFHVVNNDYT 299 (337)
Q Consensus 237 ~VTISnn~f~~H~------k~~LiG~sd~~~~d~~~~VTih~N~f~~~~----~~R~Pr~R~G~~Hv~NN~y~ 299 (337)
..-+.+|.+..-. ...+--++... +...-..|.+|-+. +. -.|-.+ .+..+=+.|.++.
T Consensus 207 ~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~--~~~~GfvF~~C~i~-g~g~~yLGRPW~-~ya~vVf~~t~l~ 275 (343)
T PLN02480 207 RSIFHNCEIFVIADRRVKIYGSITAHNRES--EDNSGFVFIKGKVY-GIGEVYLGRAKG-AYSRVIFAKTYLS 275 (343)
T ss_pred eEEEEccEEEEecCCCCCCceEEEcCCCCC--CCCCEEEEECCEEc-ccCceeeecCCC-CcceEEEEecccC
Confidence 6777777776321 12222222111 22234667777763 31 112111 2455666677764
No 31
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.44 E-value=0.062 Score=55.28 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=93.0
Q ss_pred CeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecc------cCCCccccCCCCCcCCccccCCCeEEEeCCceEEEE
Q 019664 144 FKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK------KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVD 217 (337)
Q Consensus 144 nkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~------~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWID 217 (337)
.+||+|.|.+-.-. -.+|.++.++++.|++.+|++.- .+..+.+.+..- .+ ....+|.++.++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I-~g----~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTI-TQ----IAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceE-ec----cccceEEEeccCCCEEE
Confidence 34677776543222 34778889999999999998741 011122221110 01 12345888889999999
Q ss_pred eeEeeCCCCCceeeee-----------------------------------CCceEEEEcceecccC-eeeeecCCCccc
Q 019664 218 HCSLSNCDDGLVDAIH-----------------------------------GSTAITISNNFMTHHD-KVMLLGHSDTYT 261 (337)
Q Consensus 218 Hcs~s~~~DgliDv~~-----------------------------------gs~~VTISnn~f~~H~-k~~LiG~sd~~~ 261 (337)
+++++.+.|+.|-+.+ .+.+++|+.|.++++. ...-+-++.
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999886544331 2567888888888888 443333332
Q ss_pred CCCcceEEEEeeeecCCCcCCCccccC-c----E----EEEEcCeeeCC-cceEEe-cCCCceE-EEEceEEEC
Q 019664 262 QDKNMQVTIAFNHFGEGLVQRIPRCRH-G----Y----FHVVNNDYTHW-EMYAIG-GSANPTI-NSQGNRFAA 323 (337)
Q Consensus 262 ~d~~~~VTih~N~f~~~~~~R~Pr~R~-G----~----~Hv~NN~y~~w-~~yaig-g~~~~~i-~~egN~F~a 323 (337)
++.|..|.|. ++|+ + | .-+.||.++.- ..|++- -.++..+ .+|||...+
T Consensus 272 -----~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 -----NIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred -----CcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 4566666662 2344 2 1 23566766643 456662 2233333 567887755
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.26 E-value=0.077 Score=53.97 Aligned_cols=118 Identities=23% Similarity=0.333 Sum_probs=83.9
Q ss_pred eEEEEeeceEEEeCcceEeccCeEEeccCceEE------Ee-C----CceEEEeeeceEEEEeeEEEecccCCCccccCC
Q 019664 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH------IA-G----GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS 191 (337)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~------I~-g----G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s 191 (337)
.||.|.. -..|.|...=||+|+|..-- .. + -.-|.+..++||.|++|++++. |
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS-p--------- 177 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS-K--------- 177 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-C---------
Confidence 4777741 13455666678888886310 00 0 1245678999999999999963 1
Q ss_pred CCCcCCccccCCCeEEEeCCceEEEEeeEeeCC-----CCCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcc
Q 019664 192 PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNM 266 (337)
Q Consensus 192 ~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~ 266 (337)
.=.|.+..++||.|++.++..- .||. | ...+++|+|.+|.|..-+.+.-+++.. -
T Consensus 178 -----------~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 178 -----------FFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred -----------CeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 1258888999999999999763 4554 4 467899999999999988888886532 1
Q ss_pred eEEEEeeeec
Q 019664 267 QVTIAFNHFG 276 (337)
Q Consensus 267 ~VTih~N~f~ 276 (337)
+|++.++.++
T Consensus 238 nI~I~n~~c~ 247 (404)
T PLN02188 238 QVTITRIRCG 247 (404)
T ss_pred cEEEEEEEEc
Confidence 6788777774
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.85 E-value=0.091 Score=48.23 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred eCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCC-eEEEe-CCceEEEEeeEeeCCCCCcee----
Q 019664 157 AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGD-GVSIF-GGTHIWVDHCSLSNCDDGLVD---- 230 (337)
Q Consensus 157 ~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgD-aIsI~-gs~nVWIDHcs~s~~~DgliD---- 230 (337)
.++-+|.+..++||+|.+..|........ ....| .+.+. ++++|-|-+|-|.......+-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 34567888899999999999997522110 01133 36664 578888888888875333321
Q ss_pred --eeeCCceEEEEcceecccC-eeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccC-cEEEEEcCee
Q 019664 231 --AIHGSTAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-GYFHVVNNDY 298 (337)
Q Consensus 231 --v~~gs~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~-G~~Hv~NN~y 298 (337)
.......||+.+|+|.+.. +..++... ++-+.+|+|. +..+..=.+|. +.+-+-||||
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 1122369999999998743 44344322 6888999983 55555545553 5788889987
No 34
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.42 E-value=0.2 Score=52.86 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=70.2
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCceeeee------
Q 019664 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH------ 233 (337)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~------ 233 (337)
.++..+.++|+.|+||+|..-.+ ...||+-+..++||-|+-|.|+.+.| .+-++.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCcc
Confidence 46667899999999999974211 15689999999999999999998544 222221
Q ss_pred -----CCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccc
Q 019664 234 -----GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRC 286 (337)
Q Consensus 234 -----gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~ 286 (337)
-+.+|+|++|+|..-.-+..+|+.- .-+...|++-.|.| .+ ..|.=|+
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred cccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeee-cc-Ccceeee
Confidence 2568999999999533344444321 11234688888988 33 5565555
No 35
>PLN02176 putative pectinesterase
Probab=95.08 E-value=0.72 Score=46.08 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=73.8
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-Ee--CCc------eEEEeeeceEEEEee
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GGP------CITIQYVTNIIIHGL 175 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~--gG~------gi~i~~a~NVIIrnL 175 (337)
|+.+||.. +..+++||-+.|+-+ +.|.| .+|+||.|.|...+ |. .+. .+. ..+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~-v~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFT-SYASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEE-EECCCEEEEee
Confidence 67777743 334566766677654 55666 57999999986544 32 111 222 36899999999
Q ss_pred EEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeCCce
Q 019664 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTA 237 (337)
Q Consensus 176 ~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~gs~~ 237 (337)
.|++..+... .+ + ...+-|+.+. .++.+-+.+|.|.-.. .|.+|.+-|.-.
T Consensus 130 T~~Nt~~~~~-----~~---~---~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS-----NS---S---RPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC-----CC---C---CCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9998543100 00 0 0123444443 3577778888887544 455666666666
Q ss_pred EEEEcceec
Q 019664 238 ITISNNFMT 246 (337)
Q Consensus 238 VTISnn~f~ 246 (337)
.-+.+|.|.
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 777777775
No 36
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.66 E-value=0.53 Score=49.61 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=94.6
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-----EEEeeeceEE
Q 019664 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNII 171 (337)
Q Consensus 112 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-----i~i~~a~NVI 171 (337)
|+.+||.. ...+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 67888852 223677777777743 55655 58999999987544 332 211 1124789999
Q ss_pred EEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeee
Q 019664 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (337)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (337)
.+||.|++.... ..+-|+.+. .++.+-+.+|.|.-.. .|.+|.+-
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIF 379 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIF 379 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceec
Confidence 999999985210 112344443 3566778888887644 46677777
Q ss_pred CCceEEEEcceecccC----eeeeecCCCcccCCCcceEEEEeeeecCCCc----CCCccccCcEEEEEcCeee
Q 019664 234 GSTAITISNNFMTHHD----KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV----QRIPRCRHGYFHVVNNDYT 299 (337)
Q Consensus 234 gs~~VTISnn~f~~H~----k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~----~R~Pr~R~G~~Hv~NN~y~ 299 (337)
|.-..-+++|.|.--. ...+--++... .+...-..|++|-+. +.. +| |-=.+..+-+.|.++.
T Consensus 380 G~a~avFq~C~I~~~~~~~~~g~ITAq~R~~-~~~~~Gfvf~~C~it-~~~~~yLGR-PW~~ysrvVf~~t~l~ 450 (529)
T PLN02170 380 GNSAVVFQSCNIAARKPSGDRNYVTAQGRSD-PNQNTGISIHNCRIT-AESMTYLGR-PWKEYSRTVVMQSFID 450 (529)
T ss_pred ccceEEEeccEEEEecCCCCceEEEecCCCC-CCCCceEEEEeeEEe-cCCceeeeC-CCCCCceEEEEecccC
Confidence 7777788888875311 12222111111 122335678888773 211 12 1112445556677664
No 37
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.38 E-value=1.1 Score=47.50 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=94.7
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-----EEEeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-----i~i~~a~NVII 172 (337)
|+.+||.. +..++|||=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ -....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67777743 334667776677543 44555 58999999876543 332 211 01246899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... .++-|+.+. .++++-+.+|.|.-.. .|.+|.+-|
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEcc
Confidence 99999975210 122344443 4677778888887643 466777777
Q ss_pred CceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeecCCCcCCC----ccccCcEEEEEcCeee
Q 019664 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI----PRCRHGYFHVVNNDYT 299 (337)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~----Pr~R~G~~Hv~NN~y~ 299 (337)
.-..-+++|.|.--. +.++--++... .+...-..|+++.+. .. ... |--.+..+-+.|.+..
T Consensus 387 ~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~-~~-~~~yLGRPW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 387 NGAAVLQNCKIYTRVPLPLQKVTITAQGRKS-PHQSTGFSIQDSYVL-AT-QPTYLGRPWKQYSRTVFMNTYMS 457 (537)
T ss_pred CceeEEeccEEEEccCCCCCCceEEccCCCC-CCCCcEEEEEcCEEc-cC-CceEEecCCCCCceEEEEecCCC
Confidence 778888888886421 22222222111 112234677777763 21 111 2222455666677664
No 38
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.9 Score=45.57 Aligned_cols=137 Identities=22% Similarity=0.335 Sum_probs=71.6
Q ss_pred cceEeccCeEEeccCceEEEeCCceEEE-eeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceE
Q 019664 137 EELIMNSFKTIDGRGASVHIAGGPCITI-QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHI 214 (337)
Q Consensus 137 ~~L~v~SnkTI~G~ga~~~I~gG~gi~i-~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nV 214 (337)
+.++|+--+|+.|.-.++-=++|.|=.+ ..+.++||++|++|+.-.. ...-+-+|-+. ..+--
T Consensus 45 g~~vInr~l~l~ge~ga~l~g~g~G~~vtv~aP~~~v~Gl~vr~sg~~---------------lp~m~agI~v~~~at~A 109 (408)
T COG3420 45 GNFVINRALTLRGENGAVLDGGGKGSYVTVAAPDVIVEGLTVRGSGRS---------------LPAMDAGIFVGRTATGA 109 (408)
T ss_pred ccEEEccceeeccccccEEecCCcccEEEEeCCCceeeeEEEecCCCC---------------cccccceEEeccCcccc
Confidence 4556666666666632222222344333 3789999999999952100 00112233332 34444
Q ss_pred EEEeeEeeCCCCCceeeeeCCceEEEEcceec-----------------ccCeeeeecCCCcccCCCcceEEEEeeeecC
Q 019664 215 WVDHCSLSNCDDGLVDAIHGSTAITISNNFMT-----------------HHDKVMLLGHSDTYTQDKNMQVTIAFNHFGE 277 (337)
Q Consensus 215 WIDHcs~s~~~DgliDv~~gs~~VTISnn~f~-----------------~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~ 277 (337)
-|.||.+-.+.-|.. .+++..+-|--|.+. +-..+...|..-++..|...-=|=+||-| +
T Consensus 110 ~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~-~ 186 (408)
T COG3420 110 VVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF-K 186 (408)
T ss_pred eEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee-c
Confidence 555555555544444 234444444444333 22344455555556666666667788888 4
Q ss_pred CCcCCCccccCcEEEEE
Q 019664 278 GLVQRIPRCRHGYFHVV 294 (337)
Q Consensus 278 ~~~~R~Pr~R~G~~Hv~ 294 (337)
..|+--||||. |..
T Consensus 187 --gnr~~~~Rygv-HyM 200 (408)
T COG3420 187 --GNRFRDLRYGV-HYM 200 (408)
T ss_pred --ccchhheeeeE-EEE
Confidence 35666777774 443
No 39
>PLN02432 putative pectinesterase
Probab=94.23 E-value=0.9 Score=44.50 Aligned_cols=164 Identities=17% Similarity=0.223 Sum_probs=89.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC--Cc------eEEEeeeceEEEEee
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--GP------CITIQYVTNIIIHGL 175 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g--G~------gi~i~~a~NVIIrnL 175 (337)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.+...+ |.. +. .+. ..++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~-v~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLS-VLASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEE-EECCCeEEEee
Confidence 67777743 22345555555643 455655 68999999876543 321 11 122 36899999999
Q ss_pred EEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------CceeeeeCCce
Q 019664 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTA 237 (337)
Q Consensus 176 ~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gs~~ 237 (337)
.|++..+. .+-|+.+. .++++-+.+|.|.-..| |.+|.+-|.-.
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~ 163 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAA 163 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCce
Confidence 99975321 12344443 35677788888876544 45556666666
Q ss_pred EEEEcceecccC--eeeeecCCCcccCCCcceEEEEeeeecCCCcCCC----ccccCcEEEEEcCeee
Q 019664 238 ITISNNFMTHHD--KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI----PRCRHGYFHVVNNDYT 299 (337)
Q Consensus 238 VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~----Pr~R~G~~Hv~NN~y~ 299 (337)
.-+.+|.|..-. ...+.-++... .+...-..|+++-+. + .... |.=.+..+=+.|.++.
T Consensus 164 a~Fe~c~i~s~~~~~g~itA~~r~~-~~~~~Gfvf~~c~it-g-~g~~yLGRpW~~~srvvf~~t~l~ 228 (293)
T PLN02432 164 SLFEKCHLHSLSPNNGAITAQQRTS-ASENTGFTFLGCKLT-G-AGTTYLGRPWGPYSRVVFALSYMS 228 (293)
T ss_pred EEEEeeEEEEecCCCCeEEecCCCC-CCCCceEEEEeeEEc-c-cchhhccCCCCCccEEEEEecccC
Confidence 677777775311 12222122111 112234677777763 2 1111 2212345666677764
No 40
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=93.61 E-value=0.99 Score=47.74 Aligned_cols=144 Identities=16% Similarity=0.244 Sum_probs=86.5
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce------EEEeeeceEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC------ITIQYVTNII 171 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g------i~i~~a~NVI 171 (337)
|+.+||.. +..++||+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ +. ..+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLA-VSGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEE-EECCCeE
Confidence 67778753 445777777777643 55655 57999999986543 432 211 12 3689999
Q ss_pred EEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeee
Q 019664 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (337)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (337)
.+||.|++.... ..+-|+.+. .++.+-+-+|.|.-.. .|.+|.+-
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 383 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIF 383 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceee
Confidence 999999975211 122333333 3566777777776543 46677777
Q ss_pred CCceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 234 GSTAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 234 gs~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
|.-..-+++|.|.--. +..+--++... .+...-..|+++.+.
T Consensus 384 G~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~ 430 (541)
T PLN02416 384 GNAAVVFQACNIVSKMPMPGQFTVITAQSRDT-PDEDTGISIQNCSIL 430 (541)
T ss_pred ccceEEEeccEEEEecCCCCCceEEECCCCCC-CCCCCEEEEEeeEEe
Confidence 7778888888885421 12222222111 122345788888873
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.49 E-value=2.2 Score=45.33 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=76.6
Q ss_pred hHHHhhhC-----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC----C-ceE-E------EeeeceE
Q 019664 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----G-PCI-T------IQYVTNI 170 (337)
Q Consensus 112 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g----G-~gi-~------i~~a~NV 170 (337)
|+.+||.. ..-+.|||=+.|+-+ +.+.| ..|+||.|.|...+ |.+ + .|+ + ...++++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~~~f 332 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGF 332 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEcCCe
Confidence 67777742 134567776777644 45554 57999999986544 432 1 121 1 1368999
Q ss_pred EEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeee
Q 019664 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAI 232 (337)
Q Consensus 171 IIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~ 232 (337)
+.+||.|++... + ..+-|+.+. .++.+-+.+|.|.-.. .|.+|.+
T Consensus 333 ~a~~it~~Ntag--~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFI 395 (553)
T PLN02708 333 MARDLTIQNTAG--P---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFI 395 (553)
T ss_pred EEEeeEEEcCCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEE
Confidence 999999997421 0 123455554 4678888889887643 5777877
Q ss_pred eCCceEEEEcceec
Q 019664 233 HGSTAITISNNFMT 246 (337)
Q Consensus 233 ~gs~~VTISnn~f~ 246 (337)
-|.-.+-+++|.|.
T Consensus 396 FG~a~avfq~c~i~ 409 (553)
T PLN02708 396 FGNSAAVFQDCAIL 409 (553)
T ss_pred ecCceEEEEccEEE
Confidence 88888889999886
No 42
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.42 E-value=1.1 Score=47.53 Aligned_cols=145 Identities=19% Similarity=0.307 Sum_probs=86.8
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-E---E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-i---~-i~~a~NVII 172 (337)
|+.+||.. +..++|||=+.|+- ++.+.| .+|+||.|.|...+ |.+ |.+ . + ...+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 67778753 33467777777764 455666 57999999986544 332 211 0 1 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ...-|+.+. .++.+-+.+|.|.-.. .|.+|.+-|
T Consensus 328 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 328 QDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecc
Confidence 99999975210 122344443 4577778888887643 466777777
Q ss_pred CceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-..-+++|.|.--. +..+--++... .+...-+.|+++.+.
T Consensus 391 ~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~-~~~~tG~vf~~c~i~ 436 (548)
T PLN02301 391 NAAVVFQNCKIVARKPMAGQKNMVTAQGRTD-PNQNTGISIQKCDII 436 (548)
T ss_pred cceeEEeccEEEEecCCCCCCceEEecCCCC-CCCCCEEEEEeeEEe
Confidence 778888888885311 11121111111 122345788888874
No 43
>PLN02304 probable pectinesterase
Probab=93.15 E-value=2.3 Score=43.23 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=73.1
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC--Cc----e-----EEEeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--GP----C-----ITIQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g--G~----g-----i~i~~a~NVII 172 (337)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.|...+ |.. .. + -....+++++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 67788743 23356666666754 366766 68999999986543 321 10 1 11236899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------CceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~g 234 (337)
+||.|++..+.. .+ | ..++-|+.+. .+..+-+.+|.|.-..| |.+|.+-|
T Consensus 167 ~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIFG 234 (379)
T PLN02304 167 KNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFG 234 (379)
T ss_pred EeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEec
Confidence 999999864311 00 1 0123344444 46777788888876554 45555556
Q ss_pred CceEEEEcceec
Q 019664 235 STAITISNNFMT 246 (337)
Q Consensus 235 s~~VTISnn~f~ 246 (337)
.-..-+.+|.|.
T Consensus 235 ~g~A~Fe~C~I~ 246 (379)
T PLN02304 235 DARSLYENCRLI 246 (379)
T ss_pred cceEEEEccEEE
Confidence 666666777665
No 44
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.05 E-value=1.7 Score=45.87 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=83.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce----EE-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g----i~-i~~a~NVII 172 (337)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ -+ ...+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 56667642 223455555556544 45555 57899999886533 331 211 01 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------CceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~g 234 (337)
+||.|++..+. ..+-|+.+. .++.+-+.+|.|.-..| |.+|.+-|
T Consensus 310 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG 372 (530)
T PLN02933 310 KDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFG 372 (530)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceecc
Confidence 99999974211 123445544 46777788888876444 56677777
Q ss_pred CceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-..-+++|.+.-- .+.++--++... .+...-..|++|.+.
T Consensus 373 ~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~-~~~~tGfvf~~C~it 418 (530)
T PLN02933 373 NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQ-SDQPTGISIISSRIL 418 (530)
T ss_pred CceEEEeccEEEEeccCCCCceEEEecCCCC-CCCCceEEEEeeEEe
Confidence 77777888887531 122222222111 122335778888773
No 45
>PLN02314 pectinesterase
Probab=93.03 E-value=1.3 Score=47.39 Aligned_cols=167 Identities=16% Similarity=0.234 Sum_probs=96.3
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-E---E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-i---~-i~~a~NVII 172 (337)
|+.+||.. +..++||+=+.|+-+ +.+.| .+|+|+.|.|..-+ |.+ |.. + + ...+++++.
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a 369 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIA 369 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEE
Confidence 67778743 334667776777644 55555 57899999986543 332 211 0 1 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ...-|+.+. ++...-+.+|.|.-.. .|.+|.+-|
T Consensus 370 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG 432 (586)
T PLN02314 370 KDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFG 432 (586)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceecc
Confidence 99999975211 123455554 5677778888887643 466777778
Q ss_pred CceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeecCCCcC-CC------ccccCcEEEEEcCeee
Q 019664 235 STAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQ-RI------PRCRHGYFHVVNNDYT 299 (337)
Q Consensus 235 s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~-R~------Pr~R~G~~Hv~NN~y~ 299 (337)
.-.+-+++|.|.-- .+..+--++... .+...-+.|++|.+. .... .. |-=.+..+-+.|.++.
T Consensus 433 ~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~-~~~~~~~~~yLGRpW~~ysr~v~~~s~i~ 507 (586)
T PLN02314 433 NAAVVFQNCNIQPRQPLPNQFNTITAQGKKD-PNQNTGISIQRCTIS-AFGNLTAPTYLGRPWKDFSTTVIMQSYIG 507 (586)
T ss_pred CceeeeeccEEEEecCCCCCCceEecCCCCC-CCCCCEEEEEeeEEe-cCCcccccccccCCCCCCceEEEEecccC
Confidence 88888899988531 112221111111 122335688888774 3221 00 1112345666677765
No 46
>PLN02916 pectinesterase family protein
Probab=93.00 E-value=1.8 Score=45.40 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred hHHHhhhC-------CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-----EEEeeece
Q 019664 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (337)
Q Consensus 112 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-----i~i~~a~N 169 (337)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.. -....+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67777732 234677776677544 55655 47899999986544 332 211 01246899
Q ss_pred EEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceee
Q 019664 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDA 231 (337)
Q Consensus 170 VIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv 231 (337)
++.+||.|++..+. ..+-|+.+. .++..-+.+|.|.-.. .|.+|.
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDF 341 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDF 341 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccce
Confidence 99999999975311 112334433 4566778888876543 466777
Q ss_pred eeCCceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeee
Q 019664 232 IHGSTAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHF 275 (337)
Q Consensus 232 ~~gs~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f 275 (337)
+-|.-..-+++|.|.-- ....+--++... .+...-..|++|.+
T Consensus 342 IFG~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~-~~~~tGfvf~~C~i 389 (502)
T PLN02916 342 IFGDAAVVFQNCDIFVRRPMDHQGNMITAQGRDD-PHENTGISIQHSRV 389 (502)
T ss_pred eccCceEEEecCEEEEecCCCCCcceEEecCCCC-CCCCcEEEEEeeEE
Confidence 77777788888887531 122332222111 11223567788877
No 47
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.97 E-value=1.8 Score=46.31 Aligned_cols=117 Identities=17% Similarity=0.266 Sum_probs=75.1
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------CceE----E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~gi----~-i~~a~NVII 172 (337)
|+.+||.. ...+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+- + ...+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 67778753 234566666667544 55665 46899999987544 332 2110 1 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ..+-|+-+. .++..-+.+|.|.-.. .|.+|.+-|
T Consensus 377 ~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 439 (596)
T PLN02745 377 KSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFG 439 (596)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEec
Confidence 99999985210 122344443 4677778888887644 466777777
Q ss_pred CceEEEEcceecc
Q 019664 235 STAITISNNFMTH 247 (337)
Q Consensus 235 s~~VTISnn~f~~ 247 (337)
.-..-+++|.|.-
T Consensus 440 ~a~avf~~C~i~~ 452 (596)
T PLN02745 440 DAAAIFQNCLIFV 452 (596)
T ss_pred ceeEEEEecEEEE
Confidence 7788888888853
No 48
>PLN02634 probable pectinesterase
Probab=92.69 E-value=2.6 Score=42.45 Aligned_cols=122 Identities=16% Similarity=0.275 Sum_probs=71.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEEEe-----------CCceE-------EEee
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHIA-----------GGPCI-------TIQY 166 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~I~-----------gG~gi-------~i~~ 166 (337)
|+.+||.. +..+++|+=+.|+ ..+.|.| .+|+||.|.|...+|. +|..+ ....
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V~ 147 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTVY 147 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEEE
Confidence 56666642 2234555555665 3455665 5899999998665432 01111 1236
Q ss_pred eceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------Cc
Q 019664 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GL 228 (337)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gl 228 (337)
+++++.+||.|++..+.. .+ | ..++-|+.+. .++++-+.+|.|.-..| |.
T Consensus 148 a~~F~a~niTf~Nta~~~------~~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~yf~~CyIeG~ 215 (359)
T PLN02634 148 ANYFTARNISFKNTAPAP------MP---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEGS 215 (359)
T ss_pred CCCeEEEeCeEEeCCccC------CC---C---CCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCEEEEeeEEccc
Confidence 899999999999864311 00 1 1223344443 35667788888876544 55
Q ss_pred eeeeeCCceEEEEcceecc
Q 019664 229 VDAIHGSTAITISNNFMTH 247 (337)
Q Consensus 229 iDv~~gs~~VTISnn~f~~ 247 (337)
+|.+-|.-..-+.+|.|..
T Consensus 216 VDFIFG~g~a~Fe~C~I~s 234 (359)
T PLN02634 216 IDFIFGNGRSMYKDCELHS 234 (359)
T ss_pred ccEEcCCceEEEeccEEEE
Confidence 5666666666677777753
No 49
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.50 E-value=1.9 Score=46.76 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=86.8
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-E---E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-i---~-i~~a~NVII 172 (337)
|+.+||.. +..++||+=+.|+- ++.+.| ..|+|+.|.|...+ |.+ |.+ . + ...+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 67778753 33456666666753 355666 46888999986554 332 211 0 1 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ..+-|+-+. .++..-+.+|.|.-.. .|.+|.+-|
T Consensus 342 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 404 (670)
T PLN02217 342 KNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFG 404 (670)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEec
Confidence 99999975210 123455554 4677778888886543 466777778
Q ss_pred CceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-..-+++|.|.--. +.++--++... .+...-+.|++|.+.
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIV 450 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEe
Confidence 888889999886311 12221111111 122345788888884
No 50
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=92.46 E-value=0.57 Score=49.48 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCeEEEEeeceEEEeCc------ce----Ee-ccCeEEeccCceE-EEeCCceEEEeeeceEEEEeeEEEecccCCCcc
Q 019664 120 DEPLWIIFARDMTIRLKE------EL----IM-NSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187 (337)
Q Consensus 120 ~~P~~IvF~~~g~I~L~~------~L----~v-~SnkTI~G~ga~~-~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~ 187 (337)
..|+.+.|...-.+.+.. ++ .+ -+|.||.+..-+. +..+-.||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578999998866655431 11 11 3455555543221 0001237888899999999999973
Q ss_pred ccCCCCCcCCccccCCCeEEEe------------CCceEEEEeeEeeCCCCCceeeee---CCceEEEEcceecccCeee
Q 019664 188 VRDSPRHFGWRTVSDGDGVSIF------------GGTHIWVDHCSLSNCDDGLVDAIH---GSTAITISNNFMTHHDKVM 252 (337)
Q Consensus 188 i~~s~~~~g~r~~~dgDaIsI~------------gs~nVWIDHcs~s~~~DgliDv~~---gs~~VTISnn~f~~H~k~~ 252 (337)
..|+|.+. -+++|||-||.|+.++-+++.-.+ +-.+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 22444443 257899999999998888876433 4679999999999977777
Q ss_pred eecCCCcccCCCcceEEEEeeee
Q 019664 253 LLGHSDTYTQDKNMQVTIAFNHF 275 (337)
Q Consensus 253 LiG~sd~~~~d~~~~VTih~N~f 275 (337)
-|...+.-. -..-+|+|+-|.-
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 666554322 1123455555544
No 51
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.46 E-value=2.2 Score=45.63 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=87.8
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeCCce----E-E------EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGPC----I-T------IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~gG~g----i-~------i~~a~NVII 172 (337)
|+.+||.. +..++||+=+.|+-+-+ .+.| .+|+||.|.|...+ |.++.. . + ...+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778743 33467777677765421 3655 57999999986543 443221 1 1 136899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++..+. ..+-|+-+. .++..-+.+|.|.-.. -|.+|.+-|
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 427 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFG 427 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecc
Confidence 99999985211 122344443 4667778888776543 466777778
Q ss_pred CceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-..-+++|.|.-- .+.++--++... .+...-+.|++|.+.
T Consensus 428 ~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~-~~~~~G~vf~~c~i~ 473 (587)
T PLN02484 428 NAAVVLQNCSIYARKPMAQQKNTITAQNRKD-PNQNTGISIHACRIL 473 (587)
T ss_pred cceeEEeccEEEEecCCCCCceEEEecCCCC-CCCCcEEEEEeeEEe
Confidence 88888888888631 123333222111 122345788888873
No 52
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.43 E-value=2.1 Score=45.22 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=73.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce----EE-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g----i~-i~~a~NVII 172 (337)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ =+ ...+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67777743 223566665667544 55655 47899999986443 331 211 01 246899999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++..+. ..+-|+.+. .++..-+.+|.|.-.. .|.+|.+-|
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 360 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFG 360 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEec
Confidence 99999985321 122344443 3567778888876543 466777777
Q ss_pred CceEEEEcceecc
Q 019664 235 STAITISNNFMTH 247 (337)
Q Consensus 235 s~~VTISnn~f~~ 247 (337)
.-..-+++|.|.-
T Consensus 361 ~a~avf~~C~i~~ 373 (520)
T PLN02201 361 DATAVFQNCQILA 373 (520)
T ss_pred CceEEEEccEEEE
Confidence 7778888888863
No 53
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.11 E-value=2.4 Score=44.61 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=87.5
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeCCc----eE-E------EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGP----CI-T------IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~gG~----gi-~------i~~a~NVII 172 (337)
|+.+||.+ +..+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.++. |. + ...+++++.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67778743 233566666667543 55666 57999999987544 43211 11 1 136789999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ..+-|+.+. .++..-+.+|+|.-.. .|.+|.+-|
T Consensus 289 ~nitf~Ntag~-----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG 351 (509)
T PLN02488 289 IDMCFRNTAGP-----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICG 351 (509)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEec
Confidence 99999974210 123455554 4677778888887643 466777777
Q ss_pred CceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-.+-+++|.|..-. +.++--++... .+...-..|++|.+.
T Consensus 352 ~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it 397 (509)
T PLN02488 352 NAAAVFQFCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNIT 397 (509)
T ss_pred ceEEEEEccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEe
Confidence 888888999886421 22222222111 112335788888874
No 54
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.08 E-value=2.2 Score=45.22 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=74.7
Q ss_pred hHHHhhhC------CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceE-EEeCCc----eE-E------EeeeceE
Q 019664 112 TLRYAVIQ------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAGGP----CI-T------IQYVTNI 170 (337)
Q Consensus 112 tLr~av~~------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~-~I~gG~----gi-~------i~~a~NV 170 (337)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+|+.|.|... .|.++. +. + ...++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 77888853 123566666667643 45555 5799999998654 343211 11 1 1368999
Q ss_pred EEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------Cceeee
Q 019664 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAI 232 (337)
Q Consensus 171 IIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~ 232 (337)
+.+||.|++.... ..+-|+-+. .++...+.+|.|.-..| |.+|.+
T Consensus 315 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 377 (539)
T PLN02995 315 IAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFI 377 (539)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccceE
Confidence 9999999974210 123455554 46778888998876544 556666
Q ss_pred eCCceEEEEcceecc
Q 019664 233 HGSTAITISNNFMTH 247 (337)
Q Consensus 233 ~gs~~VTISnn~f~~ 247 (337)
-|.-..-+++|.|.-
T Consensus 378 FG~a~avf~~C~i~~ 392 (539)
T PLN02995 378 FGNAAAVFQNCIILP 392 (539)
T ss_pred ecccceEEeccEEEE
Confidence 677777778887753
No 55
>PLN02682 pectinesterase family protein
Probab=91.89 E-value=16 Score=37.10 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=92.6
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC----------Cc--e-----EEEee
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----------GP--C-----ITIQY 166 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g----------G~--g-----i~i~~ 166 (337)
|+.+||.. +..+++|+=+.|+- ++.+.| .+|+||.|.|...+ |.. |. + -....
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~ 161 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVN 161 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEE
Confidence 67777743 22345555555653 456666 68999999986443 321 10 0 01246
Q ss_pred eceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------Cc
Q 019664 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GL 228 (337)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gl 228 (337)
+++++.+||.|++..+.. ++ | ..++-|+.+. .++++-+.+|.|.-..| |.
T Consensus 162 a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~ 229 (369)
T PLN02682 162 SPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGS 229 (369)
T ss_pred CCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEccc
Confidence 889999999999854211 00 1 0122344443 36777788888876544 56
Q ss_pred eeeeeCCceEEEEcceecc--cCeeeeecCCCcccCCCcceEEEEeeeecCCC----cCCCccccCcEEEEEcCeeeC
Q 019664 229 VDAIHGSTAITISNNFMTH--HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGL----VQRIPRCRHGYFHVVNNDYTH 300 (337)
Q Consensus 229 iDv~~gs~~VTISnn~f~~--H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~----~~R~Pr~R~G~~Hv~NN~y~~ 300 (337)
+|.+-|.-..-+.+|.|.. ...+.+--++... .+...-..|++|-+. +. -.| |--.+..+=+.|.+..+
T Consensus 230 VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~-~~~~~GfvF~~C~it-g~g~~yLGR-pW~~yarvVf~~t~m~~ 304 (369)
T PLN02682 230 VDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQS-VLEDTGFSFVNCKVT-GSGALYLGR-AWGTFSRVVFAYTYMDN 304 (369)
T ss_pred ccEEecCceEEEEccEEEEecCCCeEEecCCCCC-CCCCceEEEEeeEec-CCCceEeec-CCCCcceEEEEeccCCC
Confidence 6666666677777777753 1122222222111 112234567777662 21 122 11124566667777653
No 56
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=91.32 E-value=3.3 Score=43.84 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=88.6
Q ss_pred hHHHhhhC---CC----CeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-----EEEeeece
Q 019664 112 TLRYAVIQ---DE----PLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (337)
Q Consensus 112 tLr~av~~---~~----P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-----i~i~~a~N 169 (337)
|+.+||.. .. -++||+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ .....+++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v~~~~ 314 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAVSGER 314 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEEECCC
Confidence 67778742 11 2677777777654 55655 58999999986543 332 211 01236799
Q ss_pred EEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceee
Q 019664 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDA 231 (337)
Q Consensus 170 VIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv 231 (337)
+|.+||.|++.... ...-|+-+. .+...-+.+|+|.-.. .|.+|.
T Consensus 315 F~a~~it~~Ntag~-----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDF 377 (538)
T PLN03043 315 FVAVDVTFRNTAGP-----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDF 377 (538)
T ss_pred EEEEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccce
Confidence 99999999974210 123455554 4677778888887643 466777
Q ss_pred eeCCceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 232 IHGSTAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 232 ~~gs~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
+-|.-.+-+++|.|.-- .+.++--++... .+...-+.|++|-+.
T Consensus 378 IFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~ 426 (538)
T PLN03043 378 IFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIE 426 (538)
T ss_pred EeecceeeeeccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEEe
Confidence 78888888999998642 122222222111 122345788888874
No 57
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=91.15 E-value=3.9 Score=43.61 Aligned_cols=145 Identities=14% Similarity=0.234 Sum_probs=87.4
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------C-ceE----E-EeeeceEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------G-PCI----T-IQYVTNII 171 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G-~gi----~-i~~a~NVI 171 (337)
|+.+||.. +..+++|+=+.|+-+ +.+.| .+|+||.|.|..-+ |.+ | .+- + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 67788853 233566666667544 55655 47999999986443 432 1 110 1 13689999
Q ss_pred EEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeee
Q 019664 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (337)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (337)
.+||.|++..+. ..+-|+-+. .++..-+.+|.|.-.. .|.+|.+-
T Consensus 351 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 413 (572)
T PLN02990 351 AKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIF 413 (572)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEc
Confidence 999999975210 123455554 4677778888886543 46677777
Q ss_pred CCceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 234 GSTAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 234 gs~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
|.-..-+++|.|.-- .+.++--++... .+...-+.|++|.+.
T Consensus 414 G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~C~it 460 (572)
T PLN02990 414 GDAKVVLQNCNIVVRKPMKGQSCMITAQGRSD-VRESTGLVLQNCHIT 460 (572)
T ss_pred cCceEEEEccEEEEecCCCCCceEEEeCCCCC-CCCCceEEEEeeEEe
Confidence 877888899988631 122222222111 112345788888874
No 58
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=90.86 E-value=2.6 Score=42.39 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=71.3
Q ss_pred eEeccCeEEeccCceEEEeCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEe
Q 019664 139 LIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218 (337)
Q Consensus 139 L~v~SnkTI~G~ga~~~I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDH 218 (337)
|.+....|-++.-.+--|+...||-+.++..+.|..-+|.+... .|....|+||++++++.+-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 44455544444432323445778899999999999999986431 2334678999999999999999
Q ss_pred eEeeCCCCCceeeeeCCceEEEEcceeccc
Q 019664 219 CSLSNCDDGLVDAIHGSTAITISNNFMTHH 248 (337)
Q Consensus 219 cs~s~~~DgliDv~~gs~~VTISnn~f~~H 248 (337)
+.+|...||... .-|+.-+|+.|.|++-
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~~ 193 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRDL 193 (408)
T ss_pred CccccccceEEE--cccccceecccchhhe
Confidence 999999999984 6788889999999863
No 59
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.76 E-value=1.4 Score=45.35 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=55.8
Q ss_pred cCCCeEEEeC------CceEEEEeeEeeCCC--CCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEe
Q 019664 201 SDGDGVSIFG------GTHIWVDHCSLSNCD--DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAF 272 (337)
Q Consensus 201 ~dgDaIsI~g------s~nVWIDHcs~s~~~--DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~ 272 (337)
.++.+|.|-. .++.-|.|+-|..|. -|.|++ .|..-||++|.|.+..-.+-+=|.. .-|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 3556777732 367778888888874 344543 4677789999999876555554543 568999
Q ss_pred eeecCCCcC--CCcccc-CcEEE-EEcCeeeCCcc----------eEEecC------CCceEEEEceEEECCCC
Q 019664 273 NHFGEGLVQ--RIPRCR-HGYFH-VVNNDYTHWEM----------YAIGGS------ANPTINSQGNRFAAPDR 326 (337)
Q Consensus 273 N~f~~~~~~--R~Pr~R-~G~~H-v~NN~y~~w~~----------yaigg~------~~~~i~~egN~F~a~~~ 326 (337)
|+|- +... ..+-+| .|.-| |+|||+++-.. +++-.+ .-..+.+++|-|++...
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 9995 3333 245666 46666 56999986422 222111 11246778888887763
No 60
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.71 E-value=3.5 Score=43.90 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=84.9
Q ss_pred hHHHhhhC-------CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-----EEEeeece
Q 019664 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (337)
Q Consensus 112 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-----i~i~~a~N 169 (337)
|+.+||.. ..-+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.+ -....+++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~ 341 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQN 341 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEEECCC
Confidence 67777743 122566666667644 55655 57899999886443 432 221 11246799
Q ss_pred EEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceee
Q 019664 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDA 231 (337)
Q Consensus 170 VIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv 231 (337)
++.+||.|++.... ..+-|+.+. .++..-+.+|.|.-.. .|.+|.
T Consensus 342 F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDF 404 (566)
T PLN02713 342 FVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDF 404 (566)
T ss_pred eEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccce
Confidence 99999999975210 122344443 4566667888776543 466777
Q ss_pred eeCCceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 232 IHGSTAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 232 ~~gs~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
+-|.-.+-+++|.|.--. +.++--++.. ..+...-..|++|.+.
T Consensus 405 IFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~ 453 (566)
T PLN02713 405 IFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRT-DPNQNTGTSIQNCTIK 453 (566)
T ss_pred ecccceEEEeccEEEEecCCCCCcceeeecCCC-CCCCCCEEEEEcCEEe
Confidence 777788888888885321 1111111111 0122345788888884
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=90.32 E-value=3.5 Score=43.90 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=74.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-E---E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-i---~-i~~a~NVII 172 (337)
|+.+||.. +.-++|||=+.|+-+ +.+.| ..|+||.|.|..-+ |.+ |.. . + ...+++++.
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~a 349 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMA 349 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeEE
Confidence 67777743 333566666667643 55655 46889999986543 331 111 0 1 136799999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------CCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (337)
+||.|++.... ...-|+.+. .+...-+.+|.|.-.. .|.+|.+-|
T Consensus 350 ~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG 412 (565)
T PLN02468 350 RDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFG 412 (565)
T ss_pred EEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeec
Confidence 99999974210 123445544 5677888999887543 467788888
Q ss_pred CceEEEEcceec
Q 019664 235 STAITISNNFMT 246 (337)
Q Consensus 235 s~~VTISnn~f~ 246 (337)
.-.+-+++|.|.
T Consensus 413 ~a~avfq~c~i~ 424 (565)
T PLN02468 413 NSAVVFQNCNIL 424 (565)
T ss_pred cceEEEeccEEE
Confidence 888889999885
No 62
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=90.31 E-value=3.6 Score=43.99 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=88.0
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC------Cce-E---E-EeeeceEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g------G~g-i---~-i~~a~NVII 172 (337)
|+.+||.. +..++||+=+.|+-+ +.+.| .+|+||.|.|...+ |.+ |.. + + ...+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 67777743 334667766677543 55655 47899999886544 332 211 0 1 136799999
Q ss_pred EeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCC-----------------CCCceeeeeC
Q 019664 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNC-----------------DDGLVDAIHG 234 (337)
Q Consensus 173 rnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~-----------------~DgliDv~~g 234 (337)
+||.|++.... ...-|+-+. +++..-+-+|+|.-. ..|.+|.+-|
T Consensus 367 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999975210 122344443 467777888888753 2577788888
Q ss_pred CceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeec
Q 019664 235 STAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 235 s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
.-.+-+++|.|.-- .+.++--++..+ .+...-+.|++|.+.
T Consensus 430 ~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~-~~~~tG~v~~~c~i~ 475 (587)
T PLN02313 430 NAAAVLQDCDINARRPNSGQKNMVTAQGRSD-PNQNTGIVIQNCRIG 475 (587)
T ss_pred ceeEEEEccEEEEecCCCCCcceEEecCCCC-CCCCceEEEEecEEe
Confidence 88889999998732 122222222111 122345788888884
No 63
>PLN02671 pectinesterase
Probab=90.26 E-value=8.4 Score=38.91 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCc---eEEEeC----------CceE-------EE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGA---SVHIAG----------GPCI-------TI 164 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga---~~~I~g----------G~gi-------~i 164 (337)
|+.+||.. +..+++|+=+.|+- .+.|.| .+++||.|.|. +..|.. |..+ ..
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56677742 22345555556653 456666 68999999873 344541 1101 12
Q ss_pred eeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCCCc---------------
Q 019664 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGL--------------- 228 (337)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~Dgl--------------- 228 (337)
..+++++.+||.|++..+... | ...+-|+.+. .++++-+.+|.|.-..|=|
T Consensus 151 v~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~yf~~CyIe 217 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCYIQ 217 (359)
T ss_pred EECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeCCCcEEEEecEEE
Confidence 367999999999998532110 0 0122344433 3577889999887665544
Q ss_pred --eeeeeCCceEEEEcceec
Q 019664 229 --VDAIHGSTAITISNNFMT 246 (337)
Q Consensus 229 --iDv~~gs~~VTISnn~f~ 246 (337)
+|.+-|.-..-+.+|.|.
T Consensus 218 G~VDFIFG~g~A~Fe~C~I~ 237 (359)
T PLN02671 218 GSVDFIFGNAKSLYQDCVIQ 237 (359)
T ss_pred EeccEEecceeEEEeccEEE
Confidence 455555555566666664
No 64
>PLN02773 pectinesterase
Probab=90.00 E-value=22 Score=35.37 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=90.0
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeC----------------Cce-----E
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----------------GPC-----I 162 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~g----------------G~g-----i 162 (337)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|++...+ |.. |.+ -
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y--~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVY--RQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceE--EEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777742 22355565556653 356666 46899999875433 321 111 1
Q ss_pred EEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC----------------
Q 019664 163 TIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD---------------- 225 (337)
Q Consensus 163 ~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~---------------- 225 (337)
.+..++|++.+||.|++..+. ..+-|+.+. .++.+-+.+|.|.-..
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~ 159 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCY 159 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeE
Confidence 123689999999999985321 122333333 3566667777765433
Q ss_pred -CCceeeeeCCceEEEEcceecccCeeeeecCCCcccCCCcceEEEEeeeecCCCcC----CC--ccccCcEEEEEcCee
Q 019664 226 -DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQ----RI--PRCRHGYFHVVNNDY 298 (337)
Q Consensus 226 -DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~----R~--Pr~R~G~~Hv~NN~y 298 (337)
.|.+|.+-|+-..-+.+|.|..-....+--++.... ....-.-|++|-+. +... .+ |--.++.+-+.|.++
T Consensus 160 IeG~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~-~~~~GfvF~~c~it-~~~~~~~~yLGRpW~~~a~vVf~~t~l 237 (317)
T PLN02773 160 IEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSS-QESTGYVFLRCVIT-GNGGSGYMYLGRPWGPFGRVVFAYTYM 237 (317)
T ss_pred EeecccEEeeccEEEEEeeEEEEccCcEEECCCCCCC-CCCceEEEEccEEe-cCCCCcceeecCCCCCCceEEEEeccc
Confidence 466676677777778888875422222222221111 11234567777773 3211 11 222245666667766
Q ss_pred e
Q 019664 299 T 299 (337)
Q Consensus 299 ~ 299 (337)
.
T Consensus 238 ~ 238 (317)
T PLN02773 238 D 238 (317)
T ss_pred C
Confidence 4
No 65
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=88.74 E-value=4 Score=39.96 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=89.9
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEec---cCeEEeccCceEE-EeCC------------ceEEEeeeceEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIMN---SFKTIDGRGASVH-IAGG------------PCITIQYVTNII 171 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~~~-I~gG------------~gi~i~~a~NVI 171 (337)
|+.+||.. +..+++||=..|+-+ +.|.|. +++||.|.|...+ |.+. +.+. ..+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~-v~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFS-VNADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEE-E-STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccc-cccccee
Confidence 57777753 334667776777654 566663 6999999986543 3321 0111 3689999
Q ss_pred EEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCce-----------------eeeeC
Q 019664 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV-----------------DAIHG 234 (337)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~Dgli-----------------Dv~~g 234 (337)
.+||.|++... .. ....-|+.+ .++++.+.+|.|.-..|=|. |.+.|
T Consensus 91 ~~nit~~Nt~g--------------~~-~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFIfG 154 (298)
T PF01095_consen 91 AENITFENTAG--------------PS-GGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFIFG 154 (298)
T ss_dssp EEEEEEEEHCS--------------GS-G----SEEE-T-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEEEE
T ss_pred eeeeEEecCCC--------------Cc-ccceeeeee-cCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEEEC
Confidence 99999998421 00 112346665 45778899999987766554 33333
Q ss_pred CceEEEEcceeccc-----CeeeeecCCCcccCCCcceEEEEeeeecCCCcCCCc--------ccc----CcEEEEEcCe
Q 019664 235 STAITISNNFMTHH-----DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIP--------RCR----HGYFHVVNND 297 (337)
Q Consensus 235 s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~P--------r~R----~G~~Hv~NN~ 297 (337)
.-..-+.+|.|..- ...++.-++.. ..+...-.-|.+|.+- ....=.| .-| +..+=++|.+
T Consensus 155 ~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~-~~~~~~G~vF~~c~i~-~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~ 232 (298)
T PF01095_consen 155 NGTAVFENCTIHSRRPGGGQGGYITAQGRT-SPSQKSGFVFDNCTIT-GDSGVSPSYSDGSVYLGRPWGPYSRVVFINTY 232 (298)
T ss_dssp SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEE-ESTTTCGGCCCSTEEEE--SSEETEEEEES-E
T ss_pred CeeEEeeeeEEEEeccccccceeEEeCCcc-ccCCCeEEEEEEeEEe-cCccccccccceeEEecCcccceeeEEEEccc
Confidence 33334444444320 01111111110 1123445678888774 2222111 112 3467777888
Q ss_pred eeC------CcceEEecCCCceEEEEceEEECCCCC
Q 019664 298 YTH------WEMYAIGGSANPTINSQGNRFAAPDRA 327 (337)
Q Consensus 298 y~~------w~~yaigg~~~~~i~~egN~F~a~~~~ 327 (337)
... |..+.-........+.|-+-.=++.++
T Consensus 233 m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~ 268 (298)
T PF01095_consen 233 MDDHINPEGWTPWSGDPNTDTVYFAEYNNTGPGANT 268 (298)
T ss_dssp E-TTEETCES--EEETTTTTCEEEEEES-BCTTC-S
T ss_pred cCCeeeccCcccccccccccceEEEEECCcCCCCCc
Confidence 764 544333333444456675555444443
No 66
>PLN02665 pectinesterase family protein
Probab=88.09 E-value=32 Score=34.86 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=70.6
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-EeCC-----ce-----EEEeeeceEEEE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGG-----PC-----ITIQYVTNIIIH 173 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~gG-----~g-----i~i~~a~NVIIr 173 (337)
|+.+||.. +..++|||=+.|+-+ +.+.| .+++|+.|.+...+ |... .| -....+++++.+
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~a~ 159 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAA 159 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeEEE
Confidence 67788743 233666766677544 56666 57899999975432 3311 01 112478999999
Q ss_pred eeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCc-----------------eeeeeCCc
Q 019664 174 GLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL-----------------VDAIHGST 236 (337)
Q Consensus 174 nL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~ 236 (337)
||.|++..+.+.+ ...| ...-|+.+. ++++-+.+|.|.-..|=| +|.+-|.-
T Consensus 160 nitf~Nta~~~~~------~~~g----~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG~g 228 (366)
T PLN02665 160 NIIIKNSAPRPDG------KRKG----AQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSG 228 (366)
T ss_pred eeEEEeCCCCcCC------CCCC----cceEEEEEc-CCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceecccc
Confidence 9999986432110 0001 122344443 567778888887655544 44444444
Q ss_pred eEEEEcceec
Q 019664 237 AITISNNFMT 246 (337)
Q Consensus 237 ~VTISnn~f~ 246 (337)
..-+.+|.|.
T Consensus 229 ~a~fe~C~i~ 238 (366)
T PLN02665 229 KSLYLNTELH 238 (366)
T ss_pred ceeeEccEEE
Confidence 5555666554
No 67
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.63 E-value=4 Score=37.73 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=39.6
Q ss_pred ceEEEEcceecccC--eeeeecCCCcccCCCcceEEEEeeeecCCCcCCCccccC--c-----E--EEEEcCeeeCC
Q 019664 236 TAITISNNFMTHHD--KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH--G-----Y--FHVVNNDYTHW 301 (337)
Q Consensus 236 ~~VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~VTih~N~f~~~~~~R~Pr~R~--G-----~--~Hv~NN~y~~w 301 (337)
++|-|-||.+.+-. -.-|+|...+++.+....|-+|||.|.. -...|...+ | + .-+.||+|+.-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeeccc
Confidence 45667777776633 3447777666666666678888888853 455555542 2 1 35667777653
No 68
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=85.60 E-value=14 Score=32.65 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=21.9
Q ss_pred CCeEEEeCCceEEEEeeEeeCCCCCceee
Q 019664 203 GDGVSIFGGTHIWVDHCSLSNCDDGLVDA 231 (337)
Q Consensus 203 gDaIsI~gs~nVWIDHcs~s~~~DgliDv 231 (337)
.++|.+..++++||++|++.++..--+.+
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 47888888999999999999875544443
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=85.55 E-value=27 Score=36.11 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=32.9
Q ss_pred eeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCCCcee
Q 019664 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 230 (337)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~DgliD 230 (337)
..+++++.+||.|++..+.+. + ...+-|+-+. .++.+-+.+|.|.-..|=|..
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~----------~---~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSV----------D---AGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCC----------C---CCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 367999999999998532100 0 0123344443 457777888888766665553
No 70
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=82.71 E-value=26 Score=32.57 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=45.0
Q ss_pred CceEEEEeeEeeCCC-CCceee-----eeCCceEEEEcceecccCee--eeecCCCccc-CCCcceEEEEeeeecCCCcC
Q 019664 211 GTHIWVDHCSLSNCD-DGLVDA-----IHGSTAITISNNFMTHHDKV--MLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQ 281 (337)
Q Consensus 211 s~nVWIDHcs~s~~~-DgliDv-----~~gs~~VTISnn~f~~H~k~--~LiG~sd~~~-~d~~~~VTih~N~f~~~~~~ 281 (337)
+++|+|.|+.|..+. ...++. ..|-.+.-|-||.|..-..+ .-+-.....+ .......++..|.+. ++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eeee
Confidence 569999999999862 333331 34556789999999963322 2221121122 234667888889994 7887
Q ss_pred C
Q 019664 282 R 282 (337)
Q Consensus 282 R 282 (337)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 7
No 71
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=82.45 E-value=0.7 Score=34.64 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=15.9
Q ss_pred ccCCCChhhhhHhhhhccc
Q 019664 23 ASAVPDPELVVHEVHKSIN 41 (337)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (337)
..-+|||++|+++||..|+
T Consensus 22 ~aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 22 AAYVPDPENVTNEFNRHVH 40 (56)
T ss_pred HhcCCCHHHHHHHHHHHHH
Confidence 3458999999999998875
No 72
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=81.79 E-value=6.2 Score=39.19 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=74.4
Q ss_pred CCCeEEEeCCceEEEEeeEeeCCC-----CCceeeeeCCceEEEEcceecccCeeeeecCCCccc--CCCcceEEEEeee
Q 019664 202 DGDGVSIFGGTHIWVDHCSLSNCD-----DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT--QDKNMQVTIAFNH 274 (337)
Q Consensus 202 dgDaIsI~gs~nVWIDHcs~s~~~-----DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~--~d~~~~VTih~N~ 274 (337)
-+-++.|..+.||+|-..+|.... +-.|.+..++.+|-|-+|-|..|....=--+.|... ....--|||-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 346789989999999999998876 334555578899999999999865431111122211 1123579999999
Q ss_pred ecCCCcCC---Ccccc---CcE--EEEEcCeeeCCcceEEecCCCceEEEEceEEEC
Q 019664 275 FGEGLVQR---IPRCR---HGY--FHVVNNDYTHWEMYAIGGSANPTINSQGNRFAA 323 (337)
Q Consensus 275 f~~~~~~R---~Pr~R---~G~--~Hv~NN~y~~w~~yaigg~~~~~i~~egN~F~a 323 (337)
|+++-.+- +|--. -|+ +-+-+|||.+--.-+-.. .-.++.+-+|||+.
T Consensus 195 fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~Pri-RfG~vHvyNNYy~~ 250 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRI-RFGMVHVYNNYYEG 250 (345)
T ss_pred eecCCeeeeeccCCcccccCCceeEEEeccccccccccCCce-EeeEEEEecccccc
Confidence 97543221 11110 243 445689998752211000 11356788999983
No 73
>PLN02497 probable pectinesterase
Probab=77.72 E-value=81 Score=31.61 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=71.1
Q ss_pred hHHHhhhC----CCCeEEEEeeceEEEeCcceEe---ccCeEEeccCceEE-Ee--CCce-----EEEeeeceEEEEeeE
Q 019664 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GGPC-----ITIQYVTNIIIHGLN 176 (337)
Q Consensus 112 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~--gG~g-----i~i~~a~NVIIrnL~ 176 (337)
|+.+||.. +..+++|+=+.|+- ++.+.| .+++||.|+|...+ |. .+.+ -....+++++.+||.
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nlT 123 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSIT 123 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEccE
Confidence 56666632 23345555556644 455655 58999999986433 32 1111 112478999999999
Q ss_pred EEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCCC-----------------CceeeeeCCceE
Q 019664 177 IHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAI 238 (337)
Q Consensus 177 i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gs~~V 238 (337)
|++..+... .+. ...++-|+.+. .++++-+.+|.|.-..| |.+|.+-|.-..
T Consensus 124 ~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a 193 (331)
T PLN02497 124 FANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQS 193 (331)
T ss_pred EEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEEEeCEEEecccEEccCceE
Confidence 998532100 000 00122344443 46777789999877655 445555565566
Q ss_pred EEEcceec
Q 019664 239 TISNNFMT 246 (337)
Q Consensus 239 TISnn~f~ 246 (337)
-+.+|.|.
T Consensus 194 ~Fe~C~I~ 201 (331)
T PLN02497 194 IYESCVIQ 201 (331)
T ss_pred EEEccEEE
Confidence 66777765
No 74
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=75.50 E-value=4.5 Score=27.70 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=26.3
Q ss_pred eEEEeCCceEEEEeeEeeCCCCCceeeeeCCceEEEEcceecc
Q 019664 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (337)
Q Consensus 205 aIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 247 (337)
||.+..+++..|..+.++...||.. ...|.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 4666666666677777777777544 3455666666666653
No 75
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=67.58 E-value=50 Score=31.19 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=39.7
Q ss_pred ccCCCeEEEeCCc-eEEEEeeEeeCCCCCceeeeeCCceEEEEcceecccCeee
Q 019664 200 VSDGDGVSIFGGT-HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVM 252 (337)
Q Consensus 200 ~~dgDaIsI~gs~-nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~ 252 (337)
.-..||+++.+.. .+.|.-.++..+.|-.|- ..+.-.++|++-+..++.|..
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~GKl~ 145 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDFGKLY 145 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCCCEEE
Confidence 3467999999887 999999999999998886 346677999986666666644
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=53.70 E-value=58 Score=31.26 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=53.2
Q ss_pred eccCeEEeccCceEE-EeCCceEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCC------ce
Q 019664 141 MNSFKTIDGRGASVH-IAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGG------TH 213 (337)
Q Consensus 141 v~SnkTI~G~ga~~~-I~gG~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs------~n 213 (337)
..++.+|.|..-... ...|.||.|..+ +..|+|-+|+++. .+||.+.+. .+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 356666666532111 123667888665 8999999999752 244555432 34
Q ss_pred EEEEeeEeeCCCCCceeee-eCCceEEEEcceecccCeeee
Q 019664 214 IWVDHCSLSNCDDGLVDAI-HGSTAITISNNFMTHHDKVML 253 (337)
Q Consensus 214 VWIDHcs~s~~~DgliDv~-~gs~~VTISnn~f~~H~k~~L 253 (337)
+.|.-+++.....|..-.. .....-+|.||+|++-..++.
T Consensus 153 ~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 153 NVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 5566667776666653211 112224789999997655543
No 77
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=50.21 E-value=2 Score=31.26 Aligned_cols=22 Identities=41% Similarity=1.004 Sum_probs=14.9
Q ss_pred CcceeccCcccccCcccccc-Cc
Q 019664 58 IDDCWRCDPNWEKNRQRLAD-CA 79 (337)
Q Consensus 58 id~cwr~~~~w~~~r~~la~-~a 79 (337)
-|+|.||...|+..|-.-|. |+
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~ 42 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCI 42 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHH
T ss_pred hhHHheecceeccccCcchhhee
Confidence 69999999999988866554 44
No 78
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=48.55 E-value=1.7e+02 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=20.7
Q ss_pred eEEEEeeeecCCCcCCCccccCcEEEEEcCeeeC
Q 019664 267 QVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH 300 (337)
Q Consensus 267 ~VTih~N~f~~~~~~R~Pr~R~G~~Hv~NN~y~~ 300 (337)
++|+.++.. .++ .|.|---.+.+.|.-+.+
T Consensus 195 NltliNC~I-~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTI-EGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEE-ecc---CccEeecceEEeCcEeec
Confidence 789999988 343 577744456677777663
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=39.14 E-value=75 Score=21.45 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=30.7
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCC
Q 019664 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC 224 (337)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~ 224 (337)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4666677777677777663 34699999988888888887753
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=36.91 E-value=65 Score=32.20 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=34.7
Q ss_pred eeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEeCCceEEEEeeEeeCCCCCce
Q 019664 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV 229 (337)
Q Consensus 166 ~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~Dgli 229 (337)
+.+..||||++-+++-|. +.....-|.-.+.|+|..|..||...+-++.--||
T Consensus 266 ngkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred CCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 456777777777766542 11111124456778999999999999988765554
No 81
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=32.73 E-value=38 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhccCCCChhhhhHh
Q 019664 10 IFLLFLMTPALILASAVPDPELVVHE 35 (337)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (337)
++++.+..|.|+.+-+.|+|..|+-.
T Consensus 8 llilafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 8 LLILAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHHHHhhhHhhhcccCCCCcceeHH
Confidence 33355567777777789999998654
No 82
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=28.53 E-value=95 Score=30.41 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=8.9
Q ss_pred eeeceEEEEeeEEEe
Q 019664 165 QYVTNIIIHGLNIHD 179 (337)
Q Consensus 165 ~~a~NVIIrnL~i~~ 179 (337)
.+++|..|.|.+|.+
T Consensus 16 f~~~d~~l~~~~f~d 30 (277)
T PF12541_consen 16 FGSHDLRLENCTFAD 30 (277)
T ss_pred cccCCCEEEeeEEeC
Confidence 345666666666653
No 83
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=25.43 E-value=4.4e+02 Score=27.11 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=46.7
Q ss_pred EEEeeeceEEEEeeEEEecccCCCccccCCCCCcCCcc---ccCCCeEEEeCCceEEEEeeEeeCCCCCceeeeeCCceE
Q 019664 162 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT---VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (337)
Q Consensus 162 i~i~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~---~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gs~~V 238 (337)
+-+....+++||+-.|.+.... . ++ .......|+ ..-.-||.-.+...+=|-+|.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g~--c-l~-~~~~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHGT--C-LE-SWAGGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCcce--e-EE-EcCCcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 4455778899999888865310 0 10 000000000 0011233333456777888888888766642 3567
Q ss_pred EEEcceecccCeeeeec
Q 019664 239 TISNNFMTHHDKVMLLG 255 (337)
Q Consensus 239 TISnn~f~~H~k~~LiG 255 (337)
+|++|-|.+-.=..|++
T Consensus 211 ~i~hn~~~ec~Cf~l~~ 227 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMK 227 (386)
T ss_pred EEecceecccceEEEEc
Confidence 88888888754444443
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=21.92 E-value=2.6e+02 Score=29.51 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=54.4
Q ss_pred eeeceEEEEeeEEEecccCCCccccCCCCCcCCccccCCCeEEEe-CCceEEEEeeEeeCCC-----------------C
Q 019664 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------D 226 (337)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~i~~s~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------D 226 (337)
..+++++.+||.|++.... .+.-|+-+. .+.++-+.+|.|.-.. .
T Consensus 267 v~~~~F~a~nitf~Ntag~-----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~ 329 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGP-----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIY 329 (497)
T ss_pred EECCCeEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEE
Confidence 3689999999999975210 111233333 3566667777776533 4
Q ss_pred CceeeeeCCceEEEEcceecccC-----eeeeecCCCcccCCCcceEEEEeeeec
Q 019664 227 GLVDAIHGSTAITISNNFMTHHD-----KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (337)
Q Consensus 227 gliDv~~gs~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VTih~N~f~ 276 (337)
|.+|.+-|.-..-+++|.|..-. +.++.-++... .+...-+.|+++.+.
T Consensus 330 G~vDFIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~c~i~ 383 (497)
T PLN02698 330 GTIDFIFGNAAAVFQNCYLFLRRPHGKSYNVILANGRSD-PGQNTGFSLQSCRIR 383 (497)
T ss_pred eccceEecccceeecccEEEEecCCCCCceEEEecCCCC-CCCCceEEEEeeEEe
Confidence 66777777777888888885311 11222111111 122345788888874
No 85
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.00 E-value=58 Score=26.77 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=4.0
Q ss_pred hccCCCChhh
Q 019664 22 LASAVPDPEL 31 (337)
Q Consensus 22 ~~~~~~~~~~ 31 (337)
.++.+..+++
T Consensus 19 isSevaa~~~ 28 (95)
T PF07172_consen 19 ISSEVAAREL 28 (95)
T ss_pred HHhhhhhHHh
Confidence 3444443333
No 86
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=20.87 E-value=2.8e+02 Score=26.43 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHhhhCCCCeEEEEeeceEEEeCcceEeccCeEEeccCceEEEe
Q 019664 114 RYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA 157 (337)
Q Consensus 114 r~av~~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~ 157 (337)
|.-...+---+|.|+++|+.+.. -|++| .|+|.|..|-
T Consensus 146 ~~~~~~d~enviyf~k~gnldts---fvnpn---yg~~spm~ie 183 (235)
T PF11359_consen 146 RERMDHDPENVIYFDKDGNLDTS---FVNPN---YGRGSPMTIE 183 (235)
T ss_pred hhhhcCCchheEEEccCCCccce---eeCCC---CCCCCCceee
Confidence 34444333359999999865422 35666 3887775443
Done!