BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019665
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 20/307 (6%)
Query: 8 SGIRYTNLPEGYVRPESERPNLSEV------SECKNVPVIDLA---CDD---RSLIVQQV 55
SGI ++P+ Y+RP+ E ++++V + VP IDL DD R ++++
Sbjct: 12 SGI--ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 69
Query: 56 ADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS-KTMRLSTSFN 114
A ++G INH +P + +ERV + +EFF+L VEEK K +D + K +
Sbjct: 70 KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 129
Query: 115 VNKEKVHNWRDYLRLHCYPLDKY-VPEWPSNPSTFKEFVSTYCSEVRGLGYRVLELISES 173
N W DY YP +K + WP PS + E S Y +R L +V + +S
Sbjct: 130 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 189
Query: 174 LGLEKDYIKKVLG---EQGQHMAVNFYPPCPEPELTYGLPGHTDPNALTILLQDLEVAGL 230
LGLE D ++K +G E M +N+YP CP+PEL G+ HTD +ALT +L ++ V GL
Sbjct: 190 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGL 248
Query: 231 QVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMSVASFLCPNN 290
Q+ + KWV +P++ V++IGD L+ LSNG+YKS+ HR +VN EK R+S A F P
Sbjct: 249 QLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 308
Query: 291 DAMISPP 297
D ++ P
Sbjct: 309 DKIVLKP 315
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 20/307 (6%)
Query: 8 SGIRYTNLPEGYVRPESERPNLSEV------SECKNVPVIDLA---CDD---RSLIVQQV 55
SGI ++P+ Y+RP+ E ++++V + VP IDL DD R ++++
Sbjct: 13 SGI--ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 70
Query: 56 ADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS-KTMRLSTSFN 114
A ++G INH +P + +ERV + +EFF+L VEEK K +D + K +
Sbjct: 71 KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 130
Query: 115 VNKEKVHNWRDYLRLHCYPLDKY-VPEWPSNPSTFKEFVSTYCSEVRGLGYRVLELISES 173
N W DY YP +K + WP PS + E S Y +R L +V + +S
Sbjct: 131 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 190
Query: 174 LGLEKDYIKKVLG---EQGQHMAVNFYPPCPEPELTYGLPGHTDPNALTILLQDLEVAGL 230
LGLE D ++K +G E M +N+YP CP+PEL G+ HTD +ALT +L ++ V GL
Sbjct: 191 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGL 249
Query: 231 QVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMSVASFLCPNN 290
Q+ + KWV +P++ V++IGD L+ LSNG+YKS+ HR +VN EK R+S A F P
Sbjct: 250 QLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 309
Query: 291 DAMISPP 297
D ++ P
Sbjct: 310 DKIVLKP 316
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 20/307 (6%)
Query: 8 SGIRYTNLPEGYVRPESERPNLSEV------SECKNVPVIDLA---CDD---RSLIVQQV 55
SGI ++P+ Y+RP+ E ++++V + VP IDL DD R ++++
Sbjct: 13 SGI--ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 70
Query: 56 ADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS-KTMRLSTSFN 114
A ++G INH +P + ERV + +EFF+L VEEK K +D + K +
Sbjct: 71 KKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 130
Query: 115 VNKEKVHNWRDYLRLHCYPLDKY-VPEWPSNPSTFKEFVSTYCSEVRGLGYRVLELISES 173
N W DY YP +K + WP PS + E S Y +R L +V + +S
Sbjct: 131 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 190
Query: 174 LGLEKDYIKKVLG---EQGQHMAVNFYPPCPEPELTYGLPGHTDPNALTILLQDLEVAGL 230
LGLE D ++K +G E +N+YP CP+PEL G+ HTD +ALT +L + V GL
Sbjct: 191 LGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX-VPGL 249
Query: 231 QVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMSVASFLCPNN 290
Q+ + KWV +P++ V +IGD L+ LSNG+YKS+ HR +VN EK R+S A F P
Sbjct: 250 QLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 309
Query: 291 DAMISPP 297
D ++ P
Sbjct: 310 DKIVLKP 316
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 160/293 (54%), Gaps = 20/293 (6%)
Query: 36 KNVPVIDLA---CDDRSLIVQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPV 92
+N P+I L +R+ + + DAC+N+GFF+ +NH +P E + V + K +
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 93 EEKLKLYSDDPSKTMRLSTSFNVNKEKV--HNWRDYLRLHCYPLDKYVPEWPSNPSTFKE 150
E++ K + S + + +V +W L P+ + E P ++E
Sbjct: 62 EQRFK--------ELVASKALEGVQAEVTDXDWESTFFLKHLPISN-ISEVPDLDEEYRE 112
Query: 151 FVSTYCSEVRGLGYRVLELISESLGLEKDYIKKVL-GEQGQHMA--VNFYPPCPEPELTY 207
+ + L +L+L+ E+LGLEK Y+K G +G + V+ YPPCP+P+L
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 208 GLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSV 267
GL HTD + +L QD +V+GLQ+LKD +W+ V P ++ V+N+GDQL+ ++NG+YKSV
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 268 WHRAIVNAEKARMSVASFLCPNNDAMISPPKALTE---DGSGAVYRDFTYAEY 317
HR I + AR S+ASF P +DA+I P AL E + + VY F + +Y
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 13/256 (5%)
Query: 43 LACDDRSLIVQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEK------- 95
L D + Q++ + + YGF ++++ ++ ++ AK FF LPVE K
Sbjct: 14 LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVK 73
Query: 96 --LKLYSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPLDKYVPEWPSNPSTFKEFVS 153
+ Y +T + + +++ KE H RD H + WP+ FK VS
Sbjct: 74 GGARGYIPFGVETAKGADHYDL-KEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVS 132
Query: 154 TYCSEVRGLGYRVLELISESLGLEKDYIKKVLGEQGQHMAVNFYPPCPEPELTYGLPGHT 213
+ + G G +VLE I+ L LE+D+ K + + + + YPP P+ H
Sbjct: 133 WLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHG 192
Query: 214 DPNALTILLQDLEVAGLQVL-KDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAI 272
D N +T+LL E GL+VL +D +W+ +NP P VINIGD L+ L+N S HR +
Sbjct: 193 DINTITLLL-GAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-V 250
Query: 273 VNAEKARMSVASFLCP 288
VN R V + P
Sbjct: 251 VNPPPERRGVPRYSTP 266
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 42/303 (13%)
Query: 29 LSEVSECKNVPVIDLA---CDDRSL---IVQQVADACKNYGFFQAINHEVPLETVERVLE 82
+ VS+ NVP ID++ DD++ + QQ+ A ++ GFF A+NH + V+R+ +
Sbjct: 1 MGSVSKA-NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQ 56
Query: 83 VAKEF-FNLPVEEK----LKLYSDDPSKTMRLSTSFNV-NKEKVHNW--------RDYLR 128
KEF ++ EEK ++ Y+ + +R ++ K+ V ++ D+ R
Sbjct: 57 KTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 129 LHCYPLDKYVPEWP--SNPSTFKEFVSTYCSEVRGLGYRVLELISESLGLEKDYIKKVLG 186
+ V WP + F++F Y +V GL +L+ + +LG E+++ +
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 187 EQGQHMAVNF--YP---PCPEPELTYGLPG-------HTDPNALTILLQDLEVAGLQVLK 234
+V YP P PE + G H D + +T+L Q V LQV
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQS-NVQNLQVET 235
Query: 235 DDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRA-IVNAEKARMSVASFLCPNNDAM 293
+ + ++IN G + L+N YK+ HR VNAE R S+ F+ D++
Sbjct: 236 AAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSV 293
Query: 294 ISP 296
I P
Sbjct: 294 IDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 42/303 (13%)
Query: 29 LSEVSECKNVPVIDLA---CDDRSL---IVQQVADACKNYGFFQAINHEVPLETVERVLE 82
+ VS+ NVP ID++ DD++ + QQ+ A ++ GFF A+NH + V+R+ +
Sbjct: 1 MGSVSKA-NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQ 56
Query: 83 VAKEF-FNLPVEEK----LKLYSDDPSKTMRLSTSFNV-NKEKVHNW--------RDYLR 128
KEF ++ EEK ++ Y+ + +R ++ K+ V ++ D+ R
Sbjct: 57 KTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 129 LHCYPLDKYVPEWP--SNPSTFKEFVSTYCSEVRGLGYRVLELISESLGLEKDYIKKVLG 186
+ V WP + F++F Y +V GL +L+ + +LG E+++ +
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 187 EQGQHMAVNF--YP---PCPEPELTYGLPG-------HTDPNALTILLQDLEVAGLQVLK 234
+V YP P PE + G H D + +T+L Q V LQV
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQS-NVQNLQVET 235
Query: 235 DDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRA-IVNAEKARMSVASFLCPNNDAM 293
+ + ++IN G + L+N YK+ HR VNAE R S+ F+ D++
Sbjct: 236 AAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSV 293
Query: 294 ISP 296
I P
Sbjct: 294 IDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 29/260 (11%)
Query: 52 VQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPSKTMRLST 111
++ ++ + GF NH + E VER+ + FFN + + + S
Sbjct: 15 AKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASI 74
Query: 112 SFNVNKEKVHNWRDYLRLHCYPLDKYVPEWPSNPSTFKEFVSTYCSEVRGLGYRVLELIS 171
S V + ++Y H YP W P + + + Y + L +LE I
Sbjct: 75 SETAKGHTVKDIKEYY--HVYP-------WGRIPDSLRANILAYYEKANTLASELLEWIE 125
Query: 172 ESLGLEKDYIKK---------VLGEQGQHMAVNFYPPCPEPELTYGL--PGHTDPNALTI 220
D IK + + + YPP E + H D N +T+
Sbjct: 126 T---YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITV 182
Query: 221 LLQDLEVAGLQV-LKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAI----VNA 275
L E GLQV KD W+ V +INIGD LQ S+G + S HR I +
Sbjct: 183 LPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDK 241
Query: 276 EKARMSVASFLCPNNDAMIS 295
K+R+S+ FL P+ ++S
Sbjct: 242 TKSRISLPLFLHPHPSVVLS 261
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 45 CDDRSLIVQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS 104
C D L QQV N G QA LETV+R+L V + L ++ + + S+D
Sbjct: 239 CQDHGLTPQQVVAIASNIGGKQA------LETVQRLLPVLCQDHGLTPDQVVAIASNDGG 292
Query: 105 K 105
K
Sbjct: 293 K 293
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 45 CDDRSLIVQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS 104
C D L QQV N G QA LETV+R+L V + L ++ + + S D
Sbjct: 171 CQDHGLTPQQVVAIASNGGGKQA------LETVQRLLPVLCQAHGLTPDQVVAIASHDGG 224
Query: 105 K 105
K
Sbjct: 225 K 225
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 45 CDDRSLIVQQVADACKNYGFFQAINHEVPLETVERVLEVAKEFFNLPVEEKLKLYSDDPS 104
C D L +QV N G QA LETV+R+L V + L ++ + + S D
Sbjct: 307 CQDHGLTPEQVVAIASNGGGKQA------LETVQRLLPVLCQAHGLTPDQVVAIASHDGG 360
Query: 105 K 105
K
Sbjct: 361 K 361
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 226 EVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMS---- 281
E G++V D A + NA+ I +Q Q N + H A+ MS
Sbjct: 205 EAHGIKVFYD----ATRCVENAYFIK--EQEQGFENKSIAEIVHEMFSYADGCTMSGKXD 258
Query: 282 ----VASFLCPNNDAMISPPKALT 301
+ FLC N+D M S K L
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELV 282
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 226 EVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMS---- 281
E G++V D A + NA+ I +Q Q N + H A+ MS
Sbjct: 205 EAHGIKVFYD----ATRCVENAYFIK--EQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 282 ----VASFLCPNNDAMISPPKALT 301
+ FLC N+D M S K L
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELV 282
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 226 EVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMS---- 281
E G++V D A + NA+ I +Q Q N + H A+ MS
Sbjct: 205 EAHGIKVFYD----ATRCVENAYFIK--EQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 282 ----VASFLCPNNDAMISPPKALT 301
+ FLC N+D M S K L
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELV 282
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 226 EVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMS---- 281
E G++V D A + NA+ I +Q Q N + H A+ MS
Sbjct: 205 EAHGIKVFYD----ATRCVENAYFIK--EQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 282 ----VASFLCPNNDAMISPPKALT 301
+ FLC N+D M S K L
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELV 282
>pdb|2PO3|A Chain A, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
pdb|2PO3|B Chain B, Crystal Structure Analysis Of Desi In The Presence Of Its
Tdp-Sugar Product
Length = 424
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 164 YRVLELISESLGLEKDYIKKVLGEQGQHMAVNFYPPCPEPELTYGLP 210
Y ++E+ + G+ +D + +VL +G H F P C E E G P
Sbjct: 298 YVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQP 344
>pdb|2YHK|A Chain A, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
pdb|2YHK|B Chain B, D214a Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii
Length = 456
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 226 EVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGRYKSVWHRAIVNAEKARMS---- 281
E G++V + A + NA+ I +Q Q N + H A+ MS
Sbjct: 205 EAHGIKVF----YAATRCVENAYFIK--EQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 282 ----VASFLCPNNDAMISPPKALT 301
+ FLC N+D M S K L
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELV 282
>pdb|4AX1|B Chain B, Q157n Mutant. Crystal Structure Of The Mobile
Metallo-Beta- Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 157 SEVRGLGYRVLELISESLGLEKDYIKKVLGEQGQHMAVNFYPPCPEPE-LTYGLPGHTDP 215
+ +R LG+R ++ + E L E + Y P + L GLP TDP
Sbjct: 85 ANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDP 144
Query: 216 NALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIG 253
N + VA + L DD V+V PL V + G
Sbjct: 145 N-FEVAEPVAPVANIVTLADDGVVSVGPLALTAVASPG 181
>pdb|3S6C|A Chain A, Structure Of Human Cd1e
Length = 392
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 204 ELTYGLPGHTDPNALTILLQDLEVAGLQVLKDDKWVAVNPLPNAFVINIGDQLQALSNGR 263
E+ L GHT P L L++ E + +K + W++ P P + QL +G
Sbjct: 263 EILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRL----QLVCHVSGF 318
Query: 264 Y-KSVWHRAIVNAEKARMSVASFLCPNND 291
Y K VW + ++ R + + PN D
Sbjct: 319 YPKPVWVMWMRGEQEQRGTQRGDVLPNAD 347
>pdb|1G13|A Chain A, Human Gm2 Activator Structure
pdb|1G13|B Chain B, Human Gm2 Activator Structure
pdb|1G13|C Chain C, Human Gm2 Activator Structure
Length = 162
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 179 DYIKKVLGEQGQHMAVNFYP---PCPEPELTYGLPGH 212
DYI E + P PCPEP TYGLP H
Sbjct: 70 DYIGSCTFEHFCDVLDXLIPTGEPCPEPLRTYGLPCH 106
>pdb|2AG9|A Chain A, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
Protein
pdb|2AG9|B Chain B, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
Protein
Length = 164
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 199 PCPEPELTYGLPGH 212
PCPEP TYGLP H
Sbjct: 95 PCPEPLRTYGLPCH 108
>pdb|1PU5|A Chain A, Gm2-activator Protein Crystal Structure
pdb|1PU5|B Chain B, Gm2-activator Protein Crystal Structure
pdb|1PU5|C Chain C, Gm2-activator Protein Crystal Structure
pdb|1TJJ|A Chain A, Human Gm2 Activator Protein Paf Complex
pdb|1TJJ|B Chain B, Human Gm2 Activator Protein Paf Complex
pdb|1TJJ|C Chain C, Human Gm2 Activator Protein Paf Complex
pdb|2AF9|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|C Chain C, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG4|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG4|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
Length = 164
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 199 PCPEPELTYGLPGH 212
PCPEP TYGLP H
Sbjct: 95 PCPEPLRTYGLPCH 108
>pdb|1PUB|A Chain A, Gm2-Activator Protein Crystal Structure
Length = 162
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 199 PCPEPELTYGLPGH 212
PCPEP TYGLP H
Sbjct: 93 PCPEPLRTYGLPCH 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,744,021
Number of Sequences: 62578
Number of extensions: 453152
Number of successful extensions: 1377
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 29
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)