Query 019666
Match_columns 337
No_of_seqs 243 out of 1028
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 3.3E-71 7.1E-76 517.3 23.9 284 38-337 10-298 (302)
2 COG5539 Predicted cysteine pro 100.0 8.9E-33 1.9E-37 258.1 7.8 279 36-335 7-305 (306)
3 PF02338 OTU: OTU-like cystein 99.9 2.1E-26 4.6E-31 191.6 6.8 116 192-331 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.7 1.1E-17 2.3E-22 154.6 6.0 122 185-335 109-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.6 7.1E-16 1.5E-20 144.2 7.1 102 218-336 139-244 (244)
6 KOG3991 Uncharacterized conser 99.6 3.6E-15 7.8E-20 136.1 8.5 98 218-337 156-256 (256)
7 KOG2605 OTU (ovarian tumor)-li 99.4 3.6E-13 7.9E-18 132.6 5.4 133 175-336 207-343 (371)
8 COG5539 Predicted cysteine pro 98.8 9.3E-10 2E-14 104.1 1.9 112 191-335 117-230 (306)
9 PF05415 Peptidase_C36: Beet n 87.5 1.1 2.4E-05 36.1 4.6 65 191-292 3-69 (104)
10 PF14282 FlxA: FlxA-like prote 82.1 14 0.00031 30.4 9.1 62 42-104 17-78 (106)
11 PF04645 DUF603: Protein of un 70.4 13 0.00028 33.5 6.0 45 46-97 107-151 (181)
12 PF05412 Peptidase_C33: Equine 58.8 7.2 0.00016 32.4 2.1 18 191-208 4-21 (108)
13 PF06657 Cep57_MT_bd: Centroso 55.1 59 0.0013 25.4 6.6 45 47-98 27-71 (79)
14 PRK09784 hypothetical protein; 52.4 7.5 0.00016 37.1 1.3 23 182-204 196-218 (417)
15 PF08232 Striatin: Striatin fa 52.1 40 0.00087 28.9 5.7 44 51-99 25-68 (134)
16 PF05529 Bap31: B-cell recepto 51.7 43 0.00092 30.0 6.1 54 51-105 125-181 (192)
17 PF07851 TMPIT: TMPIT-like pro 50.4 33 0.00071 34.1 5.5 42 45-97 40-81 (330)
18 PF12999 PRKCSH-like: Glucosid 49.4 38 0.00083 30.6 5.3 52 43-98 120-174 (176)
19 COG5007 Predicted transcriptio 49.0 14 0.0003 29.1 2.1 58 174-234 3-62 (80)
20 PRK11546 zraP zinc resistance 46.0 99 0.0021 27.1 7.2 60 35-98 45-110 (143)
21 PF06785 UPF0242: Uncharacteri 43.0 65 0.0014 32.1 6.2 50 42-103 132-183 (401)
22 PF06858 NOG1: Nucleolar GTP-b 42.7 65 0.0014 23.9 4.8 36 172-208 2-37 (58)
23 PRK10803 tol-pal system protei 41.6 65 0.0014 30.7 6.0 52 32-95 35-86 (263)
24 KOG4364 Chromatin assembly fac 40.9 1.7E+02 0.0037 31.9 9.3 18 87-104 295-312 (811)
25 KOG4100 Uncharacterized conser 40.7 14 0.00029 31.2 1.0 54 198-274 15-80 (125)
26 PRK11913 phhA phenylalanine 4- 40.6 39 0.00085 32.7 4.3 104 164-285 61-171 (275)
27 PF04420 CHD5: CHD5-like prote 40.5 1.1E+02 0.0024 26.9 6.9 55 48-102 37-91 (161)
28 KOG2894 Uncharacterized conser 38.8 3.4E+02 0.0075 26.5 10.2 24 35-58 62-85 (331)
29 KOG2605 OTU (ovarian tumor)-li 38.4 6.8 0.00015 39.4 -1.3 130 184-336 53-185 (371)
30 cd00361 arom_aa_hydroxylase Bi 38.3 38 0.00082 31.8 3.7 103 165-285 40-149 (221)
31 PF08581 Tup_N: Tup N-terminal 36.1 1.3E+02 0.0029 23.6 5.9 43 46-96 34-76 (79)
32 PF02388 FemAB: FemAB family; 35.2 1.2E+02 0.0027 30.5 7.1 51 43-95 241-291 (406)
33 PF02403 Seryl_tRNA_N: Seryl-t 34.2 1.5E+02 0.0032 23.9 6.2 21 75-95 72-92 (108)
34 PF10779 XhlA: Haemolysin XhlA 33.1 1.2E+02 0.0025 23.0 5.1 46 44-94 6-51 (71)
35 TIGR02338 gimC_beta prefoldin, 33.0 1.8E+02 0.0038 23.8 6.5 44 40-95 63-106 (110)
36 TIGR00513 accA acetyl-CoA carb 32.8 83 0.0018 31.1 5.2 42 49-98 8-49 (316)
37 cd03346 eu_TrpOH Eukaryotic tr 32.3 57 0.0012 31.8 3.9 106 166-289 101-212 (287)
38 PRK05724 acetyl-CoA carboxylas 31.3 84 0.0018 31.1 5.0 42 49-98 8-49 (319)
39 PF10224 DUF2205: Predicted co 30.8 96 0.0021 24.5 4.3 33 48-92 20-52 (80)
40 cd03345 eu_TyrOH Eukaryotic ty 30.5 2E+02 0.0043 28.2 7.3 103 165-285 99-207 (298)
41 PF14335 DUF4391: Domain of un 29.9 70 0.0015 29.5 4.0 49 41-93 173-221 (221)
42 PF13801 Metal_resist: Heavy-m 28.8 2.8E+02 0.0061 21.6 7.8 66 35-104 43-114 (125)
43 cd00632 Prefoldin_beta Prefold 28.5 2.2E+02 0.0048 22.9 6.4 45 40-96 59-103 (105)
44 PF06810 Phage_GP20: Phage min 28.2 1.7E+02 0.0036 25.8 5.9 47 50-105 33-82 (155)
45 PRK10963 hypothetical protein; 28.2 40 0.00086 31.3 2.1 16 223-238 6-21 (223)
46 CHL00198 accA acetyl-CoA carbo 28.1 1.3E+02 0.0028 29.8 5.7 43 49-99 11-53 (322)
47 PLN03230 acetyl-coenzyme A car 27.8 1.1E+02 0.0024 31.5 5.2 42 49-98 78-119 (431)
48 cd03348 pro_PheOH Prokaryotic 27.7 81 0.0018 29.7 4.0 104 164-285 45-155 (228)
49 PF05667 DUF812: Protein of un 27.7 1.8E+02 0.0039 31.2 7.1 56 11-68 290-345 (594)
50 TIGR01267 Phe4hydrox_mono phen 27.5 1.1E+02 0.0023 29.3 4.8 45 164-208 45-92 (248)
51 PF05159 Capsule_synth: Capsul 27.2 1.2E+02 0.0026 28.3 5.2 55 270-336 5-64 (269)
52 TIGR01270 Trp_5_monoox tryptop 27.0 71 0.0015 33.2 3.8 103 167-288 231-340 (464)
53 COG2825 HlpA Outer membrane pr 26.1 3.8E+02 0.0083 23.9 7.9 34 36-69 43-76 (170)
54 PF01920 Prefoldin_2: Prefoldi 26.1 2.7E+02 0.0058 21.8 6.4 44 40-95 58-101 (106)
55 PF05104 Rib_recp_KP_reg: Ribo 25.9 34 0.00075 30.1 1.1 20 39-58 3-22 (151)
56 PF09304 Cortex-I_coil: Cortex 25.7 3.5E+02 0.0075 22.6 6.9 47 41-96 31-77 (107)
57 KOG4809 Rab6 GTPase-interactin 25.5 1.5E+02 0.0033 31.5 5.8 23 82-104 392-414 (654)
58 PF02996 Prefoldin: Prefoldin 25.2 2.2E+02 0.0048 23.0 5.9 48 39-98 72-119 (120)
59 KOG1962 B-cell receptor-associ 25.1 1.4E+02 0.003 28.0 5.0 48 33-92 154-201 (216)
60 smart00718 DM4_12 DM4/DM12 fam 25.0 53 0.0012 26.4 2.0 31 170-207 6-37 (95)
61 COG0825 AccA Acetyl-CoA carbox 24.9 1.4E+02 0.0031 29.3 5.2 47 49-103 7-53 (317)
62 PRK11020 hypothetical protein; 24.9 1.9E+02 0.0041 24.5 5.2 22 44-65 31-52 (118)
63 KOG1265 Phospholipase C [Lipid 24.9 2.8E+02 0.0061 31.5 7.8 27 43-69 1081-1107(1189)
64 COG5481 Uncharacterized conser 24.8 3.1E+02 0.0066 20.6 6.1 49 43-93 10-61 (67)
65 KOG0642 Cell-cycle nuclear pro 24.3 84 0.0018 33.3 3.7 52 43-99 33-84 (577)
66 KOG4807 F-actin binding protei 23.4 1.5E+02 0.0033 30.3 5.2 17 42-58 354-370 (593)
67 KOG2264 Exostosin EXT1L [Signa 23.4 1.6E+02 0.0036 31.6 5.6 51 15-65 55-107 (907)
68 PF15261 DUF4591: Domain of un 22.3 1E+02 0.0022 26.7 3.3 28 31-58 100-127 (134)
69 PF15619 Lebercilin: Ciliary p 22.1 3.5E+02 0.0075 24.7 7.0 50 41-95 58-107 (194)
70 PF10211 Ax_dynein_light: Axon 21.0 6E+02 0.013 22.9 8.3 22 42-63 82-103 (189)
71 TIGR01268 Phe4hydrox_tetr phen 20.8 1.1E+02 0.0023 31.7 3.6 105 167-289 204-314 (436)
72 PF03255 ACCA: Acetyl co-enzym 20.3 15 0.00033 32.2 -2.1 38 50-95 6-43 (145)
73 TIGR01269 Tyr_3_monoox tyrosin 20.2 1.3E+02 0.0029 31.1 4.1 101 167-285 225-331 (457)
74 PF07106 TBPIP: Tat binding pr 20.2 4.2E+02 0.0092 23.0 7.0 47 46-95 88-134 (169)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-71 Score=517.25 Aligned_cols=284 Identities=44% Similarity=0.749 Sum_probs=245.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCC
Q 019666 38 KQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNG--NEKS 115 (337)
Q Consensus 38 ~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l~~~~~~~--~~~~ 115 (337)
..+++++|++|||+|+|+||++||+|||+++||+| ++||+++.+|++||.+|.+||.+||..+......+ ..+.
T Consensus 10 ~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~ 85 (302)
T KOG2606|consen 10 DEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKEN 85 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCcccc
Confidence 34556999999999999999999999999999996 88999999999999999999999999998533211 1122
Q ss_pred cchhhhhhhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHHh--cccCCchhHHHHHHHHhccCCCEEeeeC
Q 019666 116 NLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQS--NIVSDRTVEDEKLEKKLGPLGLTVNDIK 192 (337)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~sK~~~Rr~~r~~~~~~~~-~~i~~e~~--~~~~~r~~E~~~l~~~L~~~gL~i~~I~ 192 (337)
..++++..+++++....++.|+.||++|||.+++..++.++ ++|.+++. +.++.+..|.+.+.+.|...||.+++||
T Consensus 86 ~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip 165 (302)
T KOG2606|consen 86 LIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIP 165 (302)
T ss_pred chhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCC
Confidence 24455556666666665555667888887776665555555 78876544 7889999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcccc
Q 019666 193 PDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWG 272 (337)
Q Consensus 193 ~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WG 272 (337)
+||||||+||+|||..+++ ...++..||..+|+||+.|.++|.||+.++.+++.. +.++|+.||+.|++|+.||
T Consensus 166 ~DG~ClY~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~----~~~~f~~Yc~eI~~t~~WG 239 (302)
T KOG2606|consen 166 ADGHCLYAAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL----GPEDFDKYCREIRNTAAWG 239 (302)
T ss_pred CCchhhHHHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC----CHHHHHHHHHHhhhhcccc
Confidence 9999999999999998775 458899999999999999999999999999887642 2678999999999999999
Q ss_pred cHHHHHHHHHhhcccEEEEECCCCceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666 273 GELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337 (337)
Q Consensus 273 G~lEL~ALS~~l~v~I~V~~~~~~~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~ 337 (337)
|+|||.|||++|++||+||+.++|++.+|++|.. .+||.|+||+|+||||+|||||.|.
T Consensus 240 gelEL~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 240 GELELKALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred chHHHHHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 9999999999999999999999999999999852 5899999999999999999999884
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-33 Score=258.14 Aligned_cols=279 Identities=19% Similarity=0.163 Sum_probs=220.5
Q ss_pred cccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 019666 36 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK 114 (337)
Q Consensus 36 ~~~~e~-~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~~~ 114 (337)
+..-+| |+.+..+||.|.++||.+||.++|+++.|.+ +.| |+..|..|+..|..+|+-|+..+.....+.++-
T Consensus 7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea 80 (306)
T COG5539 7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA 80 (306)
T ss_pred ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence 444555 8999999999999999999999999998876 323 999999999999999999999886433222221
Q ss_pred Ccchhh--hhhhcc------------ccccccc-CCCCCccchhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 019666 115 SNLDNL--VKAVAG------------VTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE 175 (337)
Q Consensus 115 ~~~~~~--~~~~~~------------~~~~~~~-~~~~~sK~~~Rr~~r~~~~~~~~~~i~~e~~~~----~~~r~~E~~ 175 (337)
++.+++ ...++. ....... .+....++++||+.+..++.+....+++.++.+ ++....+..
T Consensus 81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~ 160 (306)
T COG5539 81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL 160 (306)
T ss_pred CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence 111111 111111 1111111 123456899999999999998888888776554 444788888
Q ss_pred HHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhh
Q 019666 176 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 255 (337)
Q Consensus 176 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~ 255 (337)
.+...+...++.-.+++|||+|+|.+|++||..+.....-.....+|-.-+.|...|...|.+|..++.++. .
T Consensus 161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~-------m 233 (306)
T COG5539 161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA-------M 233 (306)
T ss_pred CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh-------c
Confidence 999999999999999999999999999999987643212233588999999999999999999999988765 4
Q ss_pred hhHHHHHHHhcCCcccccHHHHHHHHHhhcccEEEEECCCCceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666 256 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 335 (337)
Q Consensus 256 ~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~ 335 (337)
..|++||+.|..++.||+.+|++|||..|++|++++...+|.+.+++ . +.+..+-+.|++|+|++| |||++.
T Consensus 234 ~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~-c------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 234 VLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNI-C------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred chHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeec-c------ccccchhhHHHHHHHhhc-CccccC
Confidence 68999999999999999999999999999999999999999988754 1 124567789999999999 999974
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.93 E-value=2.1e-26 Score=191.63 Aligned_cols=116 Identities=39% Similarity=0.658 Sum_probs=94.9
Q ss_pred CCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHh-cCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcc
Q 019666 192 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR-DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA 270 (337)
Q Consensus 192 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~-~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~ 270 (337)
|||||||||||++||+.... ..+.+|..||+.+++||+ .|++.|.+|+.+ . +|+++++
T Consensus 1 pgDGnClF~Avs~~l~~~~~-~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~--------------~------~~~~~~~ 59 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGG-GSEDNHQELRKAVVDYLRDKNRDKFEEFLEG--------------D------KMSKPGT 59 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-S-SSTTTHHHHHHHHHHHHHTHTTTHHHHHHHH--------------H------HHTSTTS
T ss_pred CCCccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhhhhh--------------h------hhccccc
Confidence 79999999999999994321 057899999999999999 999999999864 1 9999999
Q ss_pred cccHHHHHHHHHhhcccEEEEECCCCceE----eCCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 019666 271 WGGELELRALTHCLRKHIMIYSGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 331 (337)
Q Consensus 271 WGG~lEL~ALS~~l~v~I~V~~~~~~~~~----ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHY 331 (337)
|||++||.|||.+|+++|+||+...+... +...+. +....++|+|+|+.+.|..|+||
T Consensus 60 Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 60 WGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred cCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence 99999999999999999999987654422 222111 23457899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-17 Score=154.58 Aligned_cols=122 Identities=20% Similarity=0.393 Sum_probs=100.7
Q ss_pred CCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH
Q 019666 185 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE 264 (337)
Q Consensus 185 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~ 264 (337)
-|.++.||.|++|||+||++-+.+... ....+||+.+|..+..||+.|..-+.+ .+-.+||.|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~----~~~~elR~iiA~~Vasnp~~yn~AiLg-------------K~n~eYc~W 171 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVS----NRPYELREIIAQEVASNPDKYNDAILG-------------KPNKEYCAW 171 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccC----CCcHHHHHHHHHHHhcChhhhhHHHhC-------------CCcHHHHHH
Confidence 366788999999999999999987432 334789999999999999999765543 456899999
Q ss_pred hcCCcccccHHHHHHHHHhhcccEEEEECCCCce-EeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666 265 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 335 (337)
Q Consensus 265 m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~-~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~ 335 (337)
|.+...|||.|||..||..|+|.|.|++.....+ .||+.- .....+.|.|. |.|||++.
T Consensus 172 I~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 172 ILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred HccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence 9999999999999999999999999999876554 356531 23567999998 79999873
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.61 E-value=7.1e-16 Score=144.24 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hcCCcccccHHHHHHHHHhhcccEEEEECCCC
Q 019666 218 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP 296 (337)
Q Consensus 218 ~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~ 296 (337)
...||..++.||+.|++.|.||+.+.+ ..+|++||.. |...+.-++++.|.|||++|+++|.|+..++.
T Consensus 139 V~flRLlts~~l~~~~d~y~~fi~~~~----------~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~ 208 (244)
T PF10275_consen 139 VIFLRLLTSAYLKSNSDEYEPFIDGLE----------YLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRS 208 (244)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSTT------------S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSS
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhcccc----------cCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCC
Confidence 458999999999999999999998642 2479999974 88888899999999999999999999998754
Q ss_pred --ceEeC-CCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666 297 --DVEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 336 (337)
Q Consensus 297 --~~~ig-~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p 336 (337)
...+. ..|.. ......+.|+|.|.. +|||-++|
T Consensus 209 ~~~~~~~~~~~~~-~~~~~~~~i~LLyrp------gHYdIly~ 244 (244)
T PF10275_consen 209 VEGDEVNRHEFPP-DNESQEPQITLLYRP------GHYDILYP 244 (244)
T ss_dssp GCSTTSEEEEES--SSTTSS-SEEEEEET------BEEEEEEE
T ss_pred CCCCccccccCCC-ccCCCCCEEEEEEcC------CccccccC
Confidence 11010 11211 112346889999996 69999987
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.6e-15 Score=136.13 Aligned_cols=98 Identities=17% Similarity=0.332 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hcCCcccccHHHHHHHHHhhcccEEEEECCCC
Q 019666 218 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP 296 (337)
Q Consensus 218 ~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~ 296 (337)
+..||..++.+|+.|+|.|.|||.++ .++.+||.. +.--..-.|+++|.|||+++++.|.|...+..
T Consensus 156 V~ylRLvtS~~ik~~adfy~pFI~e~------------~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~ 223 (256)
T KOG3991|consen 156 VMYLRLVTSGFIKSNADFYQPFIDEG------------MTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRG 223 (256)
T ss_pred HHHHHHHHHHHHhhChhhhhccCCCC------------CcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCC
Confidence 57899999999999999999999762 479999986 55445568999999999999999999887643
Q ss_pred ce-EeC-CCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 019666 297 DV-EMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 337 (337)
Q Consensus 297 ~~-~ig-~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p~ 337 (337)
.- ..+ ..|. ....|.|+|.|.. .|||-++|.
T Consensus 224 ~~~~~~hH~fp----e~s~P~I~LLYrp------GHYdilY~~ 256 (256)
T KOG3991|consen 224 SGDTVNHHDFP----EASAPEIYLLYRP------GHYDILYKK 256 (256)
T ss_pred CCCCCCCCcCc----cccCceEEEEecC------CccccccCC
Confidence 22 222 2342 3457889999985 799999984
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.6e-13 Score=132.65 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=102.2
Q ss_pred HHHHHHhccCCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhh
Q 019666 175 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 254 (337)
Q Consensus 175 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~ 254 (337)
..+...+...|+.+..|..||+|+|||+++|+++ +...|..+|+.+++++..++++|..|++.
T Consensus 207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~-----d~e~~~~~~~~~~dq~~~e~~~~~~~vt~------------ 269 (371)
T KOG2605|consen 207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG-----DDEQHDHNRRECVDQLKKERDFYEDYVTE------------ 269 (371)
T ss_pred HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhc-----CHHHHHHHHHHHHHHHhhccccccccccc------------
Confidence 3344444778999999999999999999999999 45689999999999999999999988863
Q ss_pred hhhHHHHHHHhcCCcccccHHHHHHHHH---hhcccEEEEECCCCceE-eCCCcCCCCCCCCCCeEEEEeccCCCCCCCc
Q 019666 255 VERFENYCKEVESTAAWGGELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEH 330 (337)
Q Consensus 255 ~~~~~~Y~~~m~~~~~WGG~lEL~ALS~---~l~v~I~V~~~~~~~~~-ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeH 330 (337)
+|..|++.++..+.||.++|++|+|. ....++.|.+...+.|+ +.+.+. .....+++. |..-.|
T Consensus 270 --~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h 337 (371)
T KOG2605|consen 270 --DFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVH 337 (371)
T ss_pred --chhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhh
Confidence 69999999999999999999999995 55566777666666654 222221 112223333 334589
Q ss_pred cccccc
Q 019666 331 YNSVIP 336 (337)
Q Consensus 331 YnSv~p 336 (337)
|+.+++
T Consensus 338 ~~~~~~ 343 (371)
T KOG2605|consen 338 YNTARH 343 (371)
T ss_pred hhhccc
Confidence 998875
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.3e-10 Score=104.06 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=91.0
Q ss_pred eCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhcCCcc
Q 019666 191 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA 270 (337)
Q Consensus 191 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~ 270 (337)
..+|..|+|+++++.++-. .+.+||..++..+.+|||.|.+.+.+ .+.-.||.++.++..
T Consensus 117 ~~~d~srl~q~~~~~l~~a-------sv~~lrE~vs~Ev~snPDl~n~~i~~-------------~~~i~y~~~i~k~d~ 176 (306)
T COG5539 117 GQDDNSRLFQAERYSLRDA-------SVAKLREVVSLEVLSNPDLYNPAILE-------------IDVIAYATWIVKPDS 176 (306)
T ss_pred CCCchHHHHHHHHhhhhhh-------hHHHHHHHHHHHHhhCccccchhhcC-------------cchHHHHHhhhcccc
Confidence 3358899999999999752 68999999999999999999998875 356799999999999
Q ss_pred cc-cHHHHHHHHHhhcccEEEEECCCC-ceEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 019666 271 WG-GELELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 335 (337)
Q Consensus 271 WG-G~lEL~ALS~~l~v~I~V~~~~~~-~~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~ 335 (337)
|| |.+||.+||+.|++.|+|+..+.. ...+++. .....+.+.|. |.|||+..
T Consensus 177 ~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 177 QGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred CCCceEEEeEeccccceeeeeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 99 999999999999999999998843 2234331 11234667777 68999753
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=87.53 E-value=1.1 Score=36.13 Aligned_cols=65 Identities=15% Similarity=0.375 Sum_probs=46.4
Q ss_pred eCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhc--CC
Q 019666 191 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVE--ST 268 (337)
Q Consensus 191 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~--~~ 268 (337)
|..|+|||.-||+.+|+.. ...|-.. |..|. ..+..||.+++ .+
T Consensus 3 ~sR~NNCLVVAis~~L~~T--------~e~l~~~----M~An~----------------------~~i~~y~~W~r~~~~ 48 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT--------LEKLDNL----MQANV----------------------STIKKYHTWLRKKRP 48 (104)
T ss_pred ccCCCCeEeehHHHHhcch--------HHHHHHH----HHhhH----------------------HHHHHHHHHHhcCCC
Confidence 5679999999999999752 3333332 33321 35789999875 56
Q ss_pred cccccHHHHHHHHHhhcccEEEEE
Q 019666 269 AAWGGELELRALTHCLRKHIMIYS 292 (337)
Q Consensus 269 ~~WGG~lEL~ALS~~l~v~I~V~~ 292 (337)
.+|-+ -..+|+.|++.|.|--
T Consensus 49 STW~D---C~mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 49 STWDD---CRMFADALKVSMQVKV 69 (104)
T ss_pred CcHHH---HHHHHHhheeEEEEEE
Confidence 79976 4578999999988744
No 10
>PF14282 FlxA: FlxA-like protein
Probab=82.13 E-value=14 Score=30.36 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019666 42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104 (337)
Q Consensus 42 ~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l 104 (337)
.+....+=.+.++.|+.+|..+.....-.++ .++.+++.+..+|..|++.|...+.+.-..-
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888899999999999988764221222 3356779999999999999998887766554
No 11
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=70.39 E-value=13 Score=33.51 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 019666 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 97 (337)
Q Consensus 46 ~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh 97 (337)
++-+++|...|..+|..|.+... ++.++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 56788999999999999998777 3566789999999999998764
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=58.76 E-value=7.2 Score=32.40 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.6
Q ss_pred eCCCCcchHHHHHHHHhh
Q 019666 191 IKPDGHCLYRAVEDQLAH 208 (337)
Q Consensus 191 I~~DGnCLFrAIa~QL~~ 208 (337)
-|+||+|-+|+|+.-++.
T Consensus 4 PP~DG~CG~H~i~aI~n~ 21 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNH 21 (108)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 478999999999988875
No 13
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=55.13 E-value=59 Score=25.43 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 47 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 47 ~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
...+.|..+|++....|..+.. +.+|+.+..++..|-..|+.+..
T Consensus 27 ~hm~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 27 GHMKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655544 57899999999999999988764
No 14
>PRK09784 hypothetical protein; Provisional
Probab=52.42 E-value=7.5 Score=37.12 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.6
Q ss_pred ccCCCEEeeeCCCCcchHHHHHH
Q 019666 182 GPLGLTVNDIKPDGHCLYRAVED 204 (337)
Q Consensus 182 ~~~gL~i~~I~~DGnCLFrAIa~ 204 (337)
+.+||+--+|.|||-||.|||.-
T Consensus 196 ~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 196 KTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhCceecccCCCchhHHHHHHH
Confidence 56899999999999999999854
No 15
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.06 E-value=40 Score=28.93 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 019666 51 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (337)
Q Consensus 51 kE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (337)
-|+.+|+++|..|--... .++..++.+...|..||..|++--.+
T Consensus 25 iERaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999998854433 45678899999999999999765543
No 16
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.69 E-value=43 Score=30.04 Aligned_cols=54 Identities=37% Similarity=0.542 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019666 51 KEISQLQNKETELKKAAAKGSKAEQ---KAKKKQVEEEISRLSAKLREKHAKELASLG 105 (337)
Q Consensus 51 kE~k~Lq~~i~~~Kk~a~kg~K~~~---Kk~rK~v~~e~~~le~el~~rh~~El~~l~ 105 (337)
+++..+++++..++|++....++.+ +...+...+|+++|+.+|+. .+.|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3455667788888887754333111 13345678899999999988 666666665
No 17
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.38 E-value=33 Score=34.06 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 019666 45 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 97 (337)
Q Consensus 45 l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh 97 (337)
-+.+||+.+++|...++..+++++ .+-.+.+++|+.++++|.
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 356778888888887777765544 255667788888888776
No 18
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=49.36 E-value=38 Score=30.65 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 43 DEMLSRHRKEISQLQNKET---ELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 43 e~l~~rHrkE~k~Lq~~i~---~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
.+|-+.+|+++......+. .+|.... ++.+++++++..++.+|+.+|....+
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i----~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELI----EEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777777665554321 1111111 12246788899999999999887654
No 19
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=48.96 E-value=14 Score=29.13 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHhc-cCCCEEeeeCCCCcchHH-HHHHHHhhccCCCCCccHHHHHHHHHHHHhcCcc
Q 019666 174 DEKLEKKLG-PLGLTVNDIKPDGHCLYR-AVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS 234 (337)
Q Consensus 174 ~~~l~~~L~-~~gL~i~~I~~DGnCLFr-AIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d 234 (337)
.+.++.+|. .+.+.-.+|.|||+-+|- +|++.+.+.+. -..++.+-.-+.+||.+|.=
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~sr---vkrqq~vYApL~~~i~~~~I 62 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEGDGSHFQVIAVSEEFAGKSR---VKRQQLVYAPLMAYIADNEI 62 (80)
T ss_pred HHHHHHHHHhcCCccEEEEecCCceEEEEEehHhhcCccH---HHHHHHHHHHHHHHhhcCce
Confidence 345666664 578899999999998887 68888876432 24466677777888887653
No 20
>PRK11546 zraP zinc resistance protein; Provisional
Probab=46.01 E-value=99 Score=27.10 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=43.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 35 SQKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 35 ~~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a------~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
+.++...++.|.+.+..+--+|..++.+.+=.. ++.|. ++=+.+..||..|..+|.++|.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~----~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS----SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888888888888877665543222 34453 5567899999999999988875
No 21
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.96 E-value=65 Score=32.13 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Q 019666 42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE--KHAKELAS 103 (337)
Q Consensus 42 ~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~--rh~~El~~ 103 (337)
+|.++++|+.|..-||.++++++.... +-.+|-..|-+||.+ +.+++|.+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~------------Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECG------------EKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999977655 566777788666654 56667765
No 22
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=42.75 E-value=65 Score=23.93 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=25.0
Q ss_pred hHHHHHHHHhccCCCEEeeeCCCCcchHHHHHHHHhh
Q 019666 172 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 208 (337)
Q Consensus 172 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~ 208 (337)
+|.+++...---.+..++-+-+-|.|-| +|..|+..
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 5677776655556677888999999999 89999865
No 23
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.56 E-value=65 Score=30.66 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 32 GDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 32 ~~~~~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
..+.+.--...|.++.-|.+-+-+||.+|..|+..+. ++.-+++++..+|++
T Consensus 35 ~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~------------~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 35 SGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDID------------SLRGQIQENQYQLNQ 86 (263)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHHHHH
Confidence 3344444456788999999999999999999987776 555566666655554
No 24
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=40.93 E-value=1.7e+02 Score=31.86 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019666 87 SRLSAKLREKHAKELASL 104 (337)
Q Consensus 87 ~~le~el~~rh~~El~~l 104 (337)
++++..|+.+.++|+..-
T Consensus 295 ekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 295 EKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666555543
No 25
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.67 E-value=14 Score=31.23 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhccCCCCCccHHHHHHHHHHHHh--------cCccccccccccccccchhhhhhhhhhHHHHHHHhcC--
Q 019666 198 LYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR--------DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES-- 267 (337)
Q Consensus 198 LFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~--------~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~~m~~-- 267 (337)
||+.|..+-.+. ..++|.+-=.|++ -||+.-.+||. +|+.||..+.+
T Consensus 15 LYkriLrlHr~l--------p~~~R~lGD~YVkdEFrrHk~vnp~~~~~Flt---------------eW~~Ya~~l~qql 71 (125)
T KOG4100|consen 15 LYKRILRLHRGL--------PAELRALGDQYVKDEFRRHKTVNPLEAQGFLT---------------EWERYAVALSQQL 71 (125)
T ss_pred HHHHHHHHHccC--------ChHHHHHHHHHHHHHHHHhccCChHHHHHHHH---------------HHHHHHHHHHHHh
Confidence 777776665553 2245544444443 35666666664 69999987654
Q ss_pred --CcccccH
Q 019666 268 --TAAWGGE 274 (337)
Q Consensus 268 --~~~WGG~ 274 (337)
.|.|-|.
T Consensus 72 ~~~g~~K~~ 80 (125)
T KOG4100|consen 72 SSAGKWKGE 80 (125)
T ss_pred hhcCccccc
Confidence 5777553
No 26
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=40.58 E-value=39 Score=32.70 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=61.8
Q ss_pred hcccCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCcccccccc
Q 019666 164 SNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFY 240 (337)
Q Consensus 164 ~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl 240 (337)
-+...++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+- |+.|||.+.+.+ |+
T Consensus 61 L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~--Yt 122 (275)
T PRK11913 61 LGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANRRFP----------------VATFIRRPEELD--YL 122 (275)
T ss_pred cCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHhcCccc----------------eeeeecCccccC--CC
Confidence 34455666677789999986 8999999999 888888888876654 345666554421 22
Q ss_pred cccccc-c--hhhhhhhhhhHHHHHHHhcCCcccccHHHHH-HHHHhhc
Q 019666 241 LSENMI-G--EESAQSQVERFENYCKEVESTAAWGGELELR-ALTHCLR 285 (337)
Q Consensus 241 ~~~~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~-ALS~~l~ 285 (337)
..++.. + +....-....|.+|...+..-+.=+...... .||++|=
T Consensus 123 pEPDifHevfGHvPmL~~p~FAdf~q~~G~~~l~a~~~~~~~~LarlyW 171 (275)
T PRK11913 123 QEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLARLYW 171 (275)
T ss_pred CCCchHHHHhccchhhcCHHHHHHHHHHHHHHhCcChhhHHHHHhhhee
Confidence 222110 0 0000112357888888765444333333444 6788764
No 27
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.49 E-value=1.1e+02 Score=26.91 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019666 48 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 102 (337)
Q Consensus 48 rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~ 102 (337)
+-.++.++|+.+|.++|+....-+-++.=.+=-.++.++.+|++||++..+.-..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776643222222222334677888888888876654443
No 28
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=38.81 E-value=3.4e+02 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=15.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHH
Q 019666 35 SQKKQETRDEMLSRHRKEISQLQN 58 (337)
Q Consensus 35 ~~~~~e~~e~l~~rHrkE~k~Lq~ 58 (337)
+--+--|+++|.++.....++=..
T Consensus 62 sTvGLVtL~Dmk~kqeniVreRek 85 (331)
T KOG2894|consen 62 STVGLVTLDDMKAKQENIVREREK 85 (331)
T ss_pred cccceEEHHHHHHHHHHHHHHHHH
Confidence 334566788888887765554433
No 29
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=6.8 Score=39.39 Aligned_cols=130 Identities=11% Similarity=-0.002 Sum_probs=85.5
Q ss_pred CCCEEeeeCCCCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH
Q 019666 184 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK 263 (337)
Q Consensus 184 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~~~~~~~~~~~~~~~~~~Y~~ 263 (337)
.+..+....-|+.|.++...+++... +.-...=+..++-|...+.+.|.+ .. +..+.-|+-
T Consensus 53 ~~~~r~~~v~~~~~~~~~~~d~~~~~-----e~~e~~~~~~~v~~~~~~~~~~~~---~~-----------~~~~~~~~~ 113 (371)
T KOG2605|consen 53 YNNKRYGEVDRDFMIARGHQDEVLTV-----EDAEMAAICQSVLFKVLYQERFKL---PS-----------DTPCNGENS 113 (371)
T ss_pred ccCccccchhhhhhhhcccccccccc-----cHHHHhhHHhhhhhhhhhhhcccC---CC-----------CCcccccCC
Confidence 44556666779999999999999874 445666777888899888888875 22 235677888
Q ss_pred HhcCCcccccHHHHHHHHHhhcccEEEEECCCCceEeCCCcCCCCCCCCCCeEEEEec---cCCCCCCCccccccc
Q 019666 264 EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYH---RHAFGLGEHYNSVIP 336 (337)
Q Consensus 264 ~m~~~~~WGG~lEL~ALS~~l~v~I~V~~~~~~~~~ig~ef~~~~~~~~~~~I~L~Y~---~h~y~LGeHYnSv~p 336 (337)
.|...+.|-|...+.|.+.-....+...-..++.| .|..+.. .....+.+.+|+ .-++..|+++|...|
T Consensus 114 ~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~-~~~~~sd---~~~~~~~~~~~~~~~~~~~~~g~~in~y~~ 185 (371)
T KOG2605|consen 114 PMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEW-LGQSPSD---PLRSVPSMEAIHARHPEAKEVGVRINDYNP 185 (371)
T ss_pred CCCcccccccccccccccccccccchhhhccCchh-ccccccc---cccccccccchhhccccchhhcccccCCCc
Confidence 88889999999888887766555444444444444 2222221 112345566666 345556677776554
No 30
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=38.31 E-value=38 Score=31.75 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=61.3
Q ss_pred cccCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccc
Q 019666 165 NIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 241 (337)
Q Consensus 165 ~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~ 241 (337)
+...++.--.+.|.+.|++ -|+.++.|+| ..+=+|..+|+..+- ++.|||.+.+.. |+.
T Consensus 40 ~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~--Ytp 101 (221)
T cd00361 40 GLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVFP----------------VTQYIRHPEEPD--YTP 101 (221)
T ss_pred CCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCcCCCC--CCC
Confidence 3455666667789999987 8999999999 778888888775543 234565544311 121
Q ss_pred ccccc-c--hhhhhhhhhhHHHHHHHhcCCcccccH-HHHHHHHHhhc
Q 019666 242 SENMI-G--EESAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLR 285 (337)
Q Consensus 242 ~~~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~ALS~~l~ 285 (337)
.+|.. + +....-....|.+|...+..-+.=... -++..||++|=
T Consensus 102 EPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyW 149 (221)
T cd00361 102 EPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYW 149 (221)
T ss_pred CChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhh
Confidence 22110 0 000011235788888876544433334 46777888874
No 31
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.05 E-value=1.3e+02 Score=23.58 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 019666 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (337)
Q Consensus 46 ~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (337)
+..+-.|+-.++.++-.|-.+-. |-|..-.+||.+|..+|+.|
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~--------kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHR--------KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555544434 55666777777777777665
No 32
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.18 E-value=1.2e+02 Score=30.54 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 43 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 43 e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
.+.+..=.+++..|+.+|..++....+..| .++++++++++++.+++++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 556666677888888888888776543333 256778899999988887765
No 33
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.21 E-value=1.5e+02 Score=23.87 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 019666 75 QKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 75 ~Kk~rK~v~~e~~~le~el~~ 95 (337)
-+..-+.+.+++..+|.++.+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777776654
No 34
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.13 E-value=1.2e+02 Score=22.98 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 019666 44 EMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 94 (337)
Q Consensus 44 ~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~ 94 (337)
+=+.||...++++..++..+.+.-..-+ +.-+.++.++.+++..++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 4478899999999999998887766322 234778888888776543
No 35
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.96 E-value=1.8e+02 Score=23.79 Aligned_cols=44 Identities=16% Similarity=0.426 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 40 e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
-+.+++.....+.+..+...|..+.+ +.+.+..++..++..|.+
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek------------~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQR------------QEERLREQLKELQEKIQE 106 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877754 345677777777777765
No 36
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=32.78 E-value=83 Score=31.05 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 49 HrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
.-|.+.+|+.||..|++.... ..-.+.+||.+||..+.+..+
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457899999999999986652 234788999999998776544
No 37
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=32.35 E-value=57 Score=31.78 Aligned_cols=106 Identities=13% Similarity=0.220 Sum_probs=62.9
Q ss_pred ccCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCcccccccccc
Q 019666 166 IVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 242 (337)
Q Consensus 166 ~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~ 242 (337)
...++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. |+.|||.+.+.+ |+..
T Consensus 101 l~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~--YtpE 162 (287)
T cd03346 101 YREDNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFH----------------CTQYVRHSSDPF--YTPE 162 (287)
T ss_pred CCcCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------ceeeecCccccC--CCCC
Confidence 344566667789999987 5999999999 778888888877665 245666554321 1212
Q ss_pred cccc-c--hhhhhhhhhhHHHHHHHhcCCcccccHHHHHHHHHhhcccEE
Q 019666 243 ENMI-G--EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 289 (337)
Q Consensus 243 ~~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~ 289 (337)
++.. + +....-....|.+|...+..-+.=+..-+|.-||++|=-.|.
T Consensus 163 PDifHEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 163 PDTCHELLGHVPLLADPSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred CchHHHHhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhcc
Confidence 2110 0 000011235788888886532222255567778888754443
No 38
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=31.28 E-value=84 Score=31.06 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 49 HrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
.-|.+.+|+.+|..||+....+ .-.+.+||.+||..+++-.+
T Consensus 8 fe~~i~~l~~~i~~l~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 8 FEKPIAELEAKIEELRAVAEDS--------DVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhccc--------cccHHHHHHHHHHHHHHHHH
Confidence 4577899999999999865521 24788999999998776544
No 39
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.81 E-value=96 Score=24.49 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHH
Q 019666 48 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 92 (337)
Q Consensus 48 rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~e 92 (337)
+=.++.++||..+..|---+ -.|..||.+|+.|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rv------------e~Vk~E~~kL~~E 52 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRV------------EEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 33456677777766664333 3788889988765
No 40
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=30.51 E-value=2e+02 Score=28.24 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=61.0
Q ss_pred cccCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccc
Q 019666 165 NIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 241 (337)
Q Consensus 165 ~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~ 241 (337)
+...++.-..+.+.+.|++ -|+.++.|+| ...=+|..+|+-.+. |+.|||.+.+.+ |+.
T Consensus 99 gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp----------------~t~yIR~~~~~~--Ytp 160 (298)
T cd03345 99 GYSEDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHASSPM--HSP 160 (298)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCccc----------------ccceecCCcccC--CCC
Confidence 3445566667789999987 8999999999 777788888876654 235666654421 111
Q ss_pred ccccc-c--hhhhhhhhhhHHHHHHHhcCCcccccHHHHHHHHHhhc
Q 019666 242 SENMI-G--EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 285 (337)
Q Consensus 242 ~~~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~ 285 (337)
.++.. + +....-....|.+|...+..-+-=+..-+|.-||++|=
T Consensus 161 EPDi~HEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYW 207 (298)
T cd03345 161 EPDCCHELLGHVPMLADPTFAQFSQDIGLASLGASDEEIEKLSTLYW 207 (298)
T ss_pred CCchHHHHhccchhhCCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhh
Confidence 22110 0 00001113578888887654332234455666888763
No 41
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=29.89 E-value=70 Score=29.49 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 019666 41 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93 (337)
Q Consensus 41 ~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el 93 (337)
+..+...+. .++..|+..|..+++.+.|-. |=.+|=++|.++.++++||
T Consensus 173 ~~~~~~~~~-~~i~~L~kei~~L~~~~~kEk---q~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIERL-EQIEKLEKEIAKLKKKIKKEK---QFNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcC
Confidence 445544443 567888899999988877432 2356778999999888775
No 42
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=28.82 E-value=2.8e+02 Score=21.60 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=47.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019666 35 SQKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104 (337)
Q Consensus 35 ~~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a------~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~l 104 (337)
+.+......++...|+++..++...+..++... ++.|. .+=..+.+++..+..++..+...=+-++
T Consensus 43 t~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 43 TPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALLEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555568899999999999998888877665 34554 5567888888888888887765555443
No 43
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.52 E-value=2.2e+02 Score=22.89 Aligned_cols=45 Identities=11% Similarity=0.391 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 019666 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (337)
Q Consensus 40 e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (337)
.+.+++.......+..|...|..+.++ -+.+..++..++.+|.+-
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~------------~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQ------------EEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 455777777777788888877776543 346777777777777654
No 44
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.21 E-value=1.7e+02 Score=25.76 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 019666 50 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 105 (337)
Q Consensus 50 rkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~---~rh~~El~~l~ 105 (337)
+.++++...+|..||+++. | =-++..+|+.|+.+.+ +.|+.+|..+.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~--d-------~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAK--D-------NEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHhccC--C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777776433 1 2478888888887765 57777777654
No 45
>PRK10963 hypothetical protein; Provisional
Probab=28.17 E-value=40 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHhcCcccccc
Q 019666 223 QMVAAYMRDHSSDFLP 238 (337)
Q Consensus 223 ~~~a~yi~~n~d~F~p 238 (337)
..+++|+++|||.|..
T Consensus 6 ~~V~~yL~~~PdFf~~ 21 (223)
T PRK10963 6 RAVVDYLLQNPDFFIR 21 (223)
T ss_pred HHHHHHHHHCchHHhh
Confidence 4689999999999864
No 46
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=28.11 E-value=1.3e+02 Score=29.85 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 019666 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (337)
Q Consensus 49 HrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (337)
.-|.+.+|+.+|..|++-...+ .-.+.+||.+|+..+.+..++
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~--------~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKN--------DKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhccc--------ccCHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999865421 247899999999988776544
No 47
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=27.80 E-value=1.1e+02 Score=31.51 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 49 HrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
.-|.+.+|+.+|..|++....+ .-.+.+||.+||..+.+-.+
T Consensus 78 fe~pi~ele~ki~el~~~~~~~--------~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANKT--------GVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhcc--------cccHHHHHHHHHHHHHHHHH
Confidence 5578999999999999876522 35789999999998766544
No 48
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=27.71 E-value=81 Score=29.72 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=59.1
Q ss_pred hcccCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCcccccccc
Q 019666 164 SNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFY 240 (337)
Q Consensus 164 ~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl 240 (337)
-+...++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+- ++.|||.+.+.+ |+
T Consensus 45 L~l~~d~IPql~~vn~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~--Yt 106 (228)
T cd03348 45 LGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLANRRFP----------------VTNFIRRPEELD--YL 106 (228)
T ss_pred cCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCccccC--CC
Confidence 33455566666789999987 8999999998 777788877775543 344566554311 11
Q ss_pred cccccc-c--hhhhhhhhhhHHHHHHHhcCCcccccH-HHHHHHHHhhc
Q 019666 241 LSENMI-G--EESAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLR 285 (337)
Q Consensus 241 ~~~~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~ALS~~l~ 285 (337)
..+|.. + +....-....|.+|...+..-+.=... -++.-||++|=
T Consensus 107 pEPDifHe~fGHvPmL~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyW 155 (228)
T cd03348 107 QEPDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKATGLEDRALLARLYW 155 (228)
T ss_pred CCcHHHHHHhcccHhhcCHHHHHHHHHHHHHHhCCCCHHHHHHHhHhhh
Confidence 121110 0 000011235688888875433322333 45666777764
No 49
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.69 E-value=1.8e+02 Score=31.25 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=34.0
Q ss_pred hcccccccchhhhccCccccCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019666 11 ILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAA 68 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~ 68 (337)
.-|++...++...++. ..+.........+.+.....+.+|+.+||.+|+.++..+.
T Consensus 290 ~k~s~f~~~ek~~~~~--~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~ 345 (594)
T PF05667_consen 290 DKGSRFTHSEKPQEAA--PAAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIE 345 (594)
T ss_pred ccccccccccchhhhh--hccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554422211 1123333444455566778899999999999998887775
No 50
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=27.50 E-value=1.1e+02 Score=29.30 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=35.0
Q ss_pred hcccCCchhHHHHHHHHhc-cCCCEEeeeCC--CCcchHHHHHHHHhh
Q 019666 164 SNIVSDRTVEDEKLEKKLG-PLGLTVNDIKP--DGHCLYRAVEDQLAH 208 (337)
Q Consensus 164 ~~~~~~r~~E~~~l~~~L~-~~gL~i~~I~~--DGnCLFrAIa~QL~~ 208 (337)
-+...++.--.+.+.+.|. .-|+.++.|+| ...=+|..+|+-.+-
T Consensus 45 lgl~~d~IPql~~vn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp 92 (248)
T TIGR01267 45 LGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLANRRFP 92 (248)
T ss_pred cCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc
Confidence 3445566666778999998 78999999999 888888888876654
No 51
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=27.24 E-value=1.2e+02 Score=28.26 Aligned_cols=55 Identities=16% Similarity=0.378 Sum_probs=37.9
Q ss_pred ccccHH----HHHHHHHhhcccEEEEECCCCc-eEeCCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 019666 270 AWGGEL----ELRALTHCLRKHIMIYSGSFPD-VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 336 (337)
Q Consensus 270 ~WGG~l----EL~ALS~~l~v~I~V~~~~~~~-~~ig~ef~~~~~~~~~~~I~L~Y~~h~y~LGeHYnSv~p 336 (337)
.||+.- .+..+|+.+++|+.++..+--. +.+|.+ ..+|.++.+... |.+|+|..|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR~~~~~~~--------~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLRSIGLGSD--------GYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCcccccccccc--------CCCCeEEEECCC----CccCCCCCc
Confidence 588763 3456789999999999877422 222221 256888888876 889998766
No 52
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=26.98 E-value=71 Score=33.19 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=60.8
Q ss_pred cCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccc
Q 019666 167 VSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSE 243 (337)
Q Consensus 167 ~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~ 243 (337)
..++.--.+.+.+.|.+ -|+.++.|+| ...=+|..+|+..+. |+.|||.+.+.+ |+..+
T Consensus 231 ~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~r~F~~~LA~R~F~----------------~tqyIR~~~~~~--YtpEP 292 (464)
T TIGR01270 231 REDNIPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFRVFH----------------CTQYVRHSADPF--YTPEP 292 (464)
T ss_pred CccCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------eeeeeccccccC--cCCCC
Confidence 34455556678889975 5999999999 778888888887765 244666654321 11111
Q ss_pred ccc-c--hhhhhhhhhhHHHHHHHhcCCcccc-cHHHHHHHHHhhcccE
Q 019666 244 NMI-G--EESAQSQVERFENYCKEVESTAAWG-GELELRALTHCLRKHI 288 (337)
Q Consensus 244 ~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WG-G~lEL~ALS~~l~v~I 288 (337)
+.. + +....-....|.+|...+..-+ .| ..-+|.-||++|=-.|
T Consensus 293 Di~HEl~GHvPlLadp~FA~f~q~~G~~s-l~a~~e~i~~LarlyWfTV 340 (464)
T TIGR01270 293 DTCHELLGHMPLLADPSFAQFSQEIGLAS-LGASEEDIKKLATLYFFTI 340 (464)
T ss_pred chHHHHhcccchhcCHHHHHHHHHHHHhh-cCCCHHHHHHHhHhhhhhh
Confidence 110 0 0000112357888888865433 33 4556777888875443
No 53
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=26.13 E-value=3.8e+02 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=27.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019666 36 QKKQETRDEMLSRHRKEISQLQNKETELKKAAAK 69 (337)
Q Consensus 36 ~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~k 69 (337)
......++.+..+|-.|+..+|..+..+.+...+
T Consensus 43 k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445667999999999999998888888777664
No 54
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.05 E-value=2.7e+02 Score=21.78 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 40 e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
.+.+++...-...++.++..|..+++. .+.+..++..++..|.+
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~------------~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQ------------LKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 356888888888999999998888654 44777777777777654
No 55
>PF05104 Rib_recp_KP_reg: Ribosome receptor lysine/proline rich region; InterPro: IPR007794 The ribosome receptor is an integral endoplasmic reticulum protein that has been suggested to be involved in secretion. This highly conserved region is found towards the C terminus of the transmembrane domain []. The function is unclear.; GO: 0015031 protein transport, 0030176 integral to endoplasmic reticulum membrane
Probab=25.87 E-value=34 Score=30.06 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 019666 39 QETRDEMLSRHRKEISQLQN 58 (337)
Q Consensus 39 ~e~~e~l~~rHrkE~k~Lq~ 58 (337)
+.|+|+.|+.+|+|+--+|.
T Consensus 3 EtSYEEaLAkQrke~~K~~~ 22 (151)
T PF05104_consen 3 ETSYEEALAKQRKELEKTQP 22 (151)
T ss_pred cccHHHHHHHHHHHhhcccc
Confidence 45789999999999955543
No 56
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.69 E-value=3.5e+02 Score=22.63 Aligned_cols=47 Identities=6% Similarity=0.252 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 019666 41 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (337)
Q Consensus 41 ~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (337)
|.++| +..|.+++..+..+++=..+.. ++.-+++.+|+.+.+.|+..
T Consensus 31 S~~eL-~kqkd~L~~~l~~L~~q~~s~~--------qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 31 SQGEL-AKQKDQLRNALQSLQAQNASRN--------QRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34554 5666666666666655555555 56678888888888777653
No 57
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.52 E-value=1.5e+02 Score=31.49 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019666 82 VEEEISRLSAKLREKHAKELASL 104 (337)
Q Consensus 82 v~~e~~~le~el~~rh~~El~~l 104 (337)
-+++|.+|+++|..-|..+..+.
T Consensus 392 kkEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 392 KKEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhh
Confidence 36899999999999999998764
No 58
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.18 E-value=2.2e+02 Score=22.97 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 019666 39 QETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (337)
Q Consensus 39 ~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (337)
+.|.++-...-.+-++.|+..+..+.+... .+.+++..++..|.+.+.
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~------------~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELA------------ELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHCHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc
Confidence 445677677777777788887777765444 788888888888887764
No 59
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.09 E-value=1.4e+02 Score=28.00 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=23.5
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHH
Q 019666 33 DASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 92 (337)
Q Consensus 33 ~~~~~~~e~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~e 92 (337)
|...+...+.++=++.-.++++.+|.+...|+|++. +++.|..+|-.+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e------------~~~~EydrLlee 201 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE------------GLQDEYDRLLEE 201 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HcccHHHHHHHH
Confidence 333344444433344444444445555555555444 566666666543
No 60
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=24.97 E-value=53 Score=26.44 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=24.4
Q ss_pred chhHHHHHHHHhccCCCEEeeeCCCC-cchHHHHHHHHh
Q 019666 170 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 207 (337)
Q Consensus 170 r~~E~~~l~~~L~~~gL~i~~I~~DG-nCLFrAIa~QL~ 207 (337)
|..=.+.|...|...|+ || .|+-|||...-.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 44557788888988886 77 999999977554
No 61
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=24.94 E-value=1.4e+02 Score=29.27 Aligned_cols=47 Identities=32% Similarity=0.420 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019666 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 103 (337)
Q Consensus 49 HrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~El~~ 103 (337)
+-|...+|+++|..+|+....+ .-.+.++|.+||..+.+--..--..
T Consensus 7 fEkpi~ele~kI~~l~~~~~~~--------~~~~~~eI~~Le~~~~~~~~~iy~~ 53 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEEN--------DVDLSDEIERLEKRLAELTKKIYSN 53 (317)
T ss_pred hhhHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHhhHHHHhhhhhcc
Confidence 4678899999999999988633 3479999999998877655544433
No 62
>PRK11020 hypothetical protein; Provisional
Probab=24.91 E-value=1.9e+02 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019666 44 EMLSRHRKEISQLQNKETELKK 65 (337)
Q Consensus 44 ~l~~rHrkE~k~Lq~~i~~~Kk 65 (337)
++.+.|.+|+..|..+|..+|.
T Consensus 31 ~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 31 EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666653
No 63
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.89 E-value=2.8e+02 Score=31.47 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019666 43 DEMLSRHRKEISQLQNKETELKKAAAK 69 (337)
Q Consensus 43 e~l~~rHrkE~k~Lq~~i~~~Kk~a~k 69 (337)
-.|...|-+|.|+|+.+.+..+..--|
T Consensus 1081 k~LK~~~e~e~kElk~~l~kkr~e~ik 1107 (1189)
T KOG1265|consen 1081 KALKESLEKETKELKKKLDKKRMEDIK 1107 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666666666655544443333
No 64
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.75 E-value=3.1e+02 Score=20.64 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCh---hHHHhhhHHHHHHHHHHHHHH
Q 019666 43 DEMLSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 93 (337)
Q Consensus 43 e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K---~~~Kk~rK~v~~e~~~le~el 93 (337)
+--++|-|+|-+|+-+-|..|-- +.-|- +-=||+|=.+.+++.+||..+
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~--~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIA--TGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH--hCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44589999999999988877754 22222 222466778889999988754
No 65
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=24.35 E-value=84 Score=33.27 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 019666 43 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (337)
Q Consensus 43 e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (337)
|-..++---|+.+||++|..|. |+.+.++--|+.+...+..||-.|++.|+.
T Consensus 33 E~dr~~WElERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred hhhhhheehhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 4456677789999999999994 333345567889999999999999998864
No 66
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.39 E-value=1.5e+02 Score=30.30 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019666 42 RDEMLSRHRKEISQLQN 58 (337)
Q Consensus 42 ~e~l~~rHrkE~k~Lq~ 58 (337)
+|+|++.|.+|+..|+.
T Consensus 354 iEdLQRqHqRELekLre 370 (593)
T KOG4807|consen 354 IEDLQRQHQRELEKLRE 370 (593)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47777777777777763
No 67
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.39 E-value=1.6e+02 Score=31.57 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=24.3
Q ss_pred ccccchhhhccCccccCCCccccc--cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019666 15 QMADTQEIEETPSEAHSGDASQKK--QETRDEMLSRHRKEISQLQNKETELKK 65 (337)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--~e~~e~l~~rHrkE~k~Lq~~i~~~Kk 65 (337)
|-|+.|.|+.+-.-..|-.+--++ -+.+-.|++--+-|+.+|++|-|.|..
T Consensus 55 qdA~~~~~~~~~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~s 107 (907)
T KOG2264|consen 55 QDALKQNIENLDPYDASCSGYSIGRILREQKRILASVSLELTELEVKRQELNS 107 (907)
T ss_pred cccchhcccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777653221111111111 111223555566677777776554433
No 68
>PF15261 DUF4591: Domain of unknown function (DUF4591)
Probab=22.31 E-value=1e+02 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=18.9
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHH
Q 019666 31 SGDASQKKQETRDEMLSRHRKEISQLQN 58 (337)
Q Consensus 31 ~~~~~~~~~e~~e~l~~rHrkE~k~Lq~ 58 (337)
..+.+-.....+|.|.+||.+|+....+
T Consensus 100 ~~e~~~~~ls~Le~L~~RHe~ek~~Va~ 127 (134)
T PF15261_consen 100 QDEASLPELSELEMLEQRHEREKQAVAA 127 (134)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3333333334579999999999887655
No 69
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.10 E-value=3.5e+02 Score=24.71 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 41 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 41 ~~e~l~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
.+-.|+++|..|.+-|+.++-..+.... .-.++-|+.+.++-++..++..
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r-----~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQER-----ELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999998655544332 0124456777777777776653
No 70
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.03 E-value=6e+02 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019666 42 RDEMLSRHRKEISQLQNKETEL 63 (337)
Q Consensus 42 ~e~l~~rHrkE~k~Lq~~i~~~ 63 (337)
++.|+.|=|.|...+-+.++.+
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l 103 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTL 103 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444333
No 71
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=20.80 E-value=1.1e+02 Score=31.73 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=60.7
Q ss_pred cCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccc
Q 019666 167 VSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSE 243 (337)
Q Consensus 167 ~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~ 243 (337)
..++.--.+.+.+.|++ -|+.++.|+| ...=+|..+|+-.+. |+.|||.+.+-+ |+..+
T Consensus 204 ~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~~~F~~~LA~r~F~----------------~t~yiR~~~~~~--YtpEP 265 (436)
T TIGR01268 204 REDNIPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFH----------------STQYIRHHSKPM--YTPEP 265 (436)
T ss_pred CccCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------eeeeeccccccc--CCCCC
Confidence 44455566678899988 4999999999 777788888877665 234566554311 11111
Q ss_pred ccc-c--hhhhhhhhhhHHHHHHHhcCCcccccHHHHHHHHHhhcccEE
Q 019666 244 NMI-G--EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 289 (337)
Q Consensus 244 ~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~v~I~ 289 (337)
+.. + +....-....|.+|...+..-+.=+..-+|.-||++|=-.|.
T Consensus 266 Di~Hel~GHvPlla~p~fA~f~q~~G~~~l~a~~~~i~~LarlyWfTVE 314 (436)
T TIGR01268 266 DICHELLGHVPLFADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIE 314 (436)
T ss_pred hhHHHHhccchhhCCHHHHHHHHHHHHhhcCCCHHHHHHHhhhheeeec
Confidence 110 0 000011135788888886543332233456668888754443
No 72
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=20.29 E-value=15 Score=32.16 Aligned_cols=38 Identities=37% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 50 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 50 rkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
-+.+++|+.+|..|++.+.+ ..-.+.++|.+|+..+..
T Consensus 6 Ek~I~ele~kI~eL~~~~~~--------~~~d~~~ei~~Le~k~~~ 43 (145)
T PF03255_consen 6 EKPIKELEEKIEELKKLAEE--------GGIDLSDEIASLEEKLEK 43 (145)
T ss_dssp CHHHHHCCCCCC----------------------TCHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHHHH
Confidence 36788899999999877662 234678888888887754
No 73
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=20.21 E-value=1.3e+02 Score=31.14 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=58.3
Q ss_pred cCCchhHHHHHHHHhcc-CCCEEeeeCC--CCcchHHHHHHHHhhccCCCCCccHHHHHHHHHHHHhcCccccccccccc
Q 019666 167 VSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSE 243 (337)
Q Consensus 167 ~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pFl~~~ 243 (337)
..++.--.+.+.+.|.+ -|+.++.|+| ...=+|..+|+-.+. |+.|||.+.+.+ |+..+
T Consensus 225 ~~d~IPqL~dvs~~L~~~TGw~l~pV~GLl~~rdF~~~LA~RvFp----------------~TqyIR~~~~~~--YtpEP 286 (457)
T TIGR01269 225 NSESIPQLQTISEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHHSSPM--HTPEP 286 (457)
T ss_pred CcCCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------ceeeecCccccC--CCCCC
Confidence 34455566778999987 5999999999 888888888887765 234666554321 11122
Q ss_pred ccc-c--hhhhhhhhhhHHHHHHHhcCCcccccHHHHHHHHHhhc
Q 019666 244 NMI-G--EESAQSQVERFENYCKEVESTAAWGGELELRALTHCLR 285 (337)
Q Consensus 244 ~~~-~--~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALS~~l~ 285 (337)
+.. + +....-....|.+|...+..-+-=+..-+|.-||++|=
T Consensus 287 Di~HEl~GHvPlLadp~FA~F~q~~G~asl~As~e~i~~LarlYW 331 (457)
T TIGR01269 287 DCIHELLGHMPMLADRQFAQFSQEIGLASLGASEEEIEKLSTLYW 331 (457)
T ss_pred chHHHHhcccccccCHHHHHHHHHHHHHhcCCCHHHHHHHhHhHh
Confidence 110 0 00001123578888888543222123445556777763
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.20 E-value=4.2e+02 Score=23.04 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 019666 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (337)
Q Consensus 46 ~~rHrkE~k~Lq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (337)
++.-+++.+.|.+.+.++.+..|-.+= ...-.++..+|..|+..|..
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el---~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEEL---REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888776652211 23445666777777776665
Done!