Your job contains 1 sequence.
>019667
MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG
TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL
ETVGALEPRKSVLEDDFEEEEEKEENDQLDDGLEDGAYERDYHHGRSPTRERDRDRRRDS
YRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRLRDDREYGRERD
RDREREGRDRERRDRDRGRRRSRSRSRSRSRDRKRHARSSMSPRRDRDEPEDVGTRAEPK
KKKEKKEKKDDGTDHPDPEIAEANRIRASLGLKPLKL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019667
(337 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064811 - symbol:AT2G40650 species:3702 "Arabi... 627 3.0e-77 3
UNIPROTKB|Q0P5I6 - symbol:PRPF38A "Pre-mRNA-splicing fact... 473 3.3e-47 2
UNIPROTKB|Q8NAV1 - symbol:PRPF38A "Pre-mRNA-splicing fact... 473 3.3e-47 2
MGI|MGI:1916962 - symbol:Prpf38a "PRP38 pre-mRNA processi... 471 5.3e-47 2
ZFIN|ZDB-GENE-040801-225 - symbol:prpf38a "PRP38 pre-mRNA... 467 8.6e-47 2
WB|WBGene00008380 - symbol:prp-38 species:6239 "Caenorhab... 416 2.0e-45 2
FB|FBgn0050342 - symbol:Prp38 "pre-mRNA processing factor... 438 2.8e-41 1
DICTYBASE|DDB_G0274361 - symbol:prpf38a "putative U4/U6.U... 389 3.2e-41 2
GENEDB_PFALCIPARUM|PF11_0336 - symbol:PF11_0336 "hypothet... 333 1.9e-33 2
UNIPROTKB|Q8II38 - symbol:PF11_0336 "Pre-mRNA splicing fa... 333 1.9e-33 2
POMBASE|SPBC19C2.08 - symbol:prp38 "U4/U6 x U5 tri-snRNP ... 324 3.4e-29 1
ASPGD|ASPL0000077881 - symbol:AN4672 species:162425 "Emer... 212 5.9e-29 2
UNIPROTKB|G4N721 - symbol:MGG_03636 "Pre-mRNA-splicing fa... 294 5.2e-26 1
CGD|CAL0000644 - symbol:FGR16 species:5476 "Candida albic... 183 3.0e-14 1
UNIPROTKB|Q59WJ8 - symbol:FGR16 "Potential spliceosomal U... 183 3.0e-14 1
MGI|MGI:1914171 - symbol:Prpf38b "PRP38 pre-mRNA processi... 115 5.7e-05 2
RGD|1562940 - symbol:Prpf38b "PRP38 pre-mRNA processing f... 115 0.00015 2
UNIPROTKB|Q5VTL8 - symbol:PRPF38B "Pre-mRNA-splicing fact... 115 0.00024 2
>TAIR|locus:2064811 [details] [associations]
symbol:AT2G40650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] Pfam:PF03371 EMBL:CP002685 KO:K12849 OMA:YMRLTGS
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 EMBL:AY087415 IPI:IPI00538261 RefSeq:NP_565937.1
UniGene:At.28044 UniGene:At.72542 PRIDE:Q8LB54
EnsemblPlants:AT2G40650.1 GeneID:818660 KEGG:ath:AT2G40650
TAIR:At2g40650 InParanoid:Q8LB54 PhylomeDB:Q8LB54
ProtClustDB:CLSN2688844 Genevestigator:Q8LB54 Uniprot:Q8LB54
Length = 355
Score = 627 (225.8 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 113/133 (84%), Positives = 126/133 (94%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MELDHLGGTFGG+RKPTPF+CL++KMLQIQPEK+IVVEFIKNDDYKYVR+LGAFYLRLTG
Sbjct: 52 MELDHLGGTFGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
TD+D+YRYLEPLYNDYRK+RQK DG+F LTHVDEVI+ELLTKDYSCDIA+PR+KKRW L
Sbjct: 112 TDVDVYRYLEPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTL 171
Query: 121 ETVGALEPRKSVL 133
E G LEPRKSVL
Sbjct: 172 EQNGLLEPRKSVL 184
Score = 146 (56.5 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRAEPXXXXXXXXXX-DDGTDHPDPEIAEANRIRASLGL 332
+R +RS R+ R E +DV R EP +DGTDHP+PEIAE NR+RASLG+
Sbjct: 292 RRRSRSRSRDRK-RHETDDVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGM 350
Query: 333 KPLK 336
KPL+
Sbjct: 351 KPLR 354
Score = 36 (17.7 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 155 DGAYERDYHHGR 166
D YER+ HGR
Sbjct: 248 DRDYERERGHGR 259
>UNIPROTKB|Q0P5I6 [details] [associations]
symbol:PRPF38A "Pre-mRNA-splicing factor 38A" species:9913
"Bos taurus" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] Pfam:PF03371 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GeneTree:ENSGT00700000104035 EMBL:BC119992
IPI:IPI00716721 RefSeq:NP_001068775.1 UniGene:Bt.18521
ProteinModelPortal:Q0P5I6 Ensembl:ENSBTAT00000003524 GeneID:507240
KEGG:bta:507240 CTD:84950 eggNOG:NOG241318 HOGENOM:HOG000173665
HOVERGEN:HBG104959 InParanoid:Q0P5I6 KO:K12849 OMA:YMRLTGS
OrthoDB:EOG4NP74H NextBio:20867971 InterPro:IPR005037
InterPro:IPR024767 PANTHER:PTHR23142 Pfam:PF12871 Uniprot:Q0P5I6
Length = 312
Score = 473 (171.6 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 88/133 (66%), Positives = 107/133 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVL 133
E LEPR S L
Sbjct: 172 EEAEQLEPRVSAL 184
Score = 38 (18.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 274 KRHARSSMSPRRDRDEPED 292
+R S SPRR R D
Sbjct: 254 RRERHRSKSPRRHRSRSRD 272
>UNIPROTKB|Q8NAV1 [details] [associations]
symbol:PRPF38A "Pre-mRNA-splicing factor 38A" species:9606
"Homo sapiens" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] Pfam:PF03371 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 EMBL:AL513218 CTD:84950 eggNOG:NOG241318
HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849 OMA:YMRLTGS
OrthoDB:EOG4NP74H InterPro:IPR005037 InterPro:IPR024767
PANTHER:PTHR23142 Pfam:PF12871 EMBL:AK027842 EMBL:AK092038
EMBL:BC000777 EMBL:BC063655 EMBL:BC105004 EMBL:BC105006
IPI:IPI00171390 IPI:IPI00386847 RefSeq:NP_116253.2 UniGene:Hs.5301
ProteinModelPortal:Q8NAV1 IntAct:Q8NAV1 MINT:MINT-1382708
PhosphoSite:Q8NAV1 DMDM:74760086 PaxDb:Q8NAV1 PeptideAtlas:Q8NAV1
PRIDE:Q8NAV1 Ensembl:ENST00000257181 GeneID:84950 KEGG:hsa:84950
UCSC:uc001ctv.4 GeneCards:GC01P052870 HGNC:HGNC:25930
neXtProt:NX_Q8NAV1 PharmGKB:PA142671125 InParanoid:Q8NAV1
PhylomeDB:Q8NAV1 ChiTaRS:PRPF38A GenomeRNAi:84950 NextBio:75434
ArrayExpress:Q8NAV1 Bgee:Q8NAV1 CleanEx:HS_PRPF38A
Genevestigator:Q8NAV1 Uniprot:Q8NAV1
Length = 312
Score = 473 (171.6 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 88/133 (66%), Positives = 107/133 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVL 133
E LEPR S L
Sbjct: 172 EEAEQLEPRVSAL 184
Score = 38 (18.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 274 KRHARSSMSPRRDRDEPED 292
+R S SPRR R D
Sbjct: 254 RRERHRSKSPRRHRSRSRD 272
>MGI|MGI:1916962 [details] [associations]
symbol:Prpf38a "PRP38 pre-mRNA processing factor 38 (yeast)
domain containing A" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] MGI:MGI:1916962
Pfam:PF03371 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:AL626783 GeneTree:ENSGT00700000104035 CTD:84950
eggNOG:NOG241318 HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849
OMA:YMRLTGS OrthoDB:EOG4NP74H InterPro:IPR005037 PANTHER:PTHR23142
ChiTaRS:PRPF38A EMBL:AK075925 EMBL:AK169741 EMBL:CT010186
EMBL:BC059875 IPI:IPI00226155 IPI:IPI00845808 RefSeq:NP_766285.2
UniGene:Mm.157534 ProteinModelPortal:Q4FK66 PhosphoSite:Q4FK66
PaxDb:Q4FK66 PRIDE:Q4FK66 Ensembl:ENSMUST00000079213 GeneID:230596
KEGG:mmu:230596 InParanoid:Q4FK66 NextBio:379965 Bgee:Q4FK66
Genevestigator:Q4FK66 Uniprot:Q4FK66
Length = 312
Score = 471 (170.9 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 87/133 (65%), Positives = 107/133 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELKFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F+L HVDE I ELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVL 133
E LEPR S L
Sbjct: 172 EEAEQLEPRVSAL 184
Score = 38 (18.4 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 274 KRHARSSMSPRRDRDEPED 292
+R S SPRR R D
Sbjct: 254 RRERHRSKSPRRHRSRSRD 272
>ZFIN|ZDB-GENE-040801-225 [details] [associations]
symbol:prpf38a "PRP38 pre-mRNA processing factor 38
(yeast) domain containing A" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] Pfam:PF03371 ZFIN:ZDB-GENE-040801-225 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GeneTree:ENSGT00700000104035 CTD:84950
eggNOG:NOG241318 HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849
OMA:YMRLTGS OrthoDB:EOG4NP74H InterPro:IPR005037 PANTHER:PTHR23142
EMBL:BC075873 EMBL:BC152173 IPI:IPI00505995 RefSeq:NP_001003483.1
UniGene:Dr.34097 Ensembl:ENSDART00000057290 GeneID:445089
KEGG:dre:445089 InParanoid:Q6DHU4 NextBio:20831852 Bgee:Q6DHU4
Uniprot:Q6DHU4
Length = 313
Score = 467 (169.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 86/133 (64%), Positives = 106/133 (79%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELKFVGGVYGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T +D Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR L
Sbjct: 112 TSVDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVL 171
Query: 121 ETVGALEPRKSVL 133
E L+PR S L
Sbjct: 172 EEAELLDPRISAL 184
Score = 40 (19.1 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 278 RSSMSPRRDRD 288
R S SPRR+RD
Sbjct: 246 RRSPSPRRERD 256
>WB|WBGene00008380 [details] [associations]
symbol:prp-38 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] Pfam:PF03371
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0045132
GeneTree:ENSGT00700000104035 eggNOG:NOG241318 HOGENOM:HOG000173665
KO:K12849 OMA:YMRLTGS InterPro:IPR005037 PANTHER:PTHR23142
EMBL:Z74030 PIR:T20297 RefSeq:NP_505762.1 ProteinModelPortal:Q18942
STRING:Q18942 PaxDb:Q18942 EnsemblMetazoa:D1054.14.1
EnsemblMetazoa:D1054.14.2 GeneID:179499 KEGG:cel:CELE_D1054.14
UCSC:D1054.14.1 CTD:179499 WormBase:D1054.14 InParanoid:Q18942
NextBio:905666 Uniprot:Q18942
Length = 320
Score = 416 (151.5 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 77/133 (57%), Positives = 101/133 (75%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
M+L ++GG + GN KPTPF+CL +KMLQIQP+KDIV+EFI+ +++KY+R LGA YLRLT
Sbjct: 52 MDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTF 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
+IY+YLEPLYND+RKLR + GRF ++D+ ID LL +D CDI LPR++KRW L
Sbjct: 112 DSTEIYKYLEPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWAL 171
Query: 121 ETVGALEPRKSVL 133
E V L KS+L
Sbjct: 172 EEVDMLPSYKSLL 184
Score = 78 (32.5 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRAEPXXXXXXXXXXDDGTDHPDP-EIAEANRIRASLGL 332
+R R RDR D R + G D+ + EIAEAN +RA LGL
Sbjct: 256 RRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGL 315
Query: 333 KPLK 336
PL+
Sbjct: 316 APLE 319
Score = 54 (24.1 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 285 RDRDEPEDVGTRAEPXXXXXXXXXXDDGTDHPDPEIAEANR 325
R RD DVG R E + G D P P + + R
Sbjct: 216 RSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGR 256
>FB|FBgn0050342 [details] [associations]
symbol:Prp38 "pre-mRNA processing factor 38" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0010389 "regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] Pfam:PF03371 EMBL:AE013599 GO:GO:0043234
GO:GO:0010389 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GeneTree:ENSGT00700000104035 eggNOG:NOG241318 KO:K12849
InterPro:IPR005037 PANTHER:PTHR23142 EMBL:AY118843
RefSeq:NP_610463.2 UniGene:Dm.14383 IntAct:Q7JVL3
EnsemblMetazoa:FBtr0088582 GeneID:35934 KEGG:dme:Dmel_CG30342
UCSC:CG30342-RA CTD:35934 FlyBase:FBgn0050342 InParanoid:Q7JVL3
OMA:NVHGTNP OrthoDB:EOG400019 GenomeRNAi:35934 NextBio:795924
Uniprot:Q7JVL3
Length = 330
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 85/133 (63%), Positives = 104/133 (78%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPT F+CL +KMLQIQPEKDIVVEFIKN+++KYVR LGAFYLRLTG
Sbjct: 52 MELRFVGGVYGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
+D Y+YLEPLY D RKLR+++ G+F + ++DE IDELL D CDI LPRI+KR L
Sbjct: 112 AALDCYKYLEPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSIL 171
Query: 121 ETVGALEPRKSVL 133
E +EP+ SVL
Sbjct: 172 EENNEIEPKVSVL 184
>DICTYBASE|DDB_G0274361 [details] [associations]
symbol:prpf38a "putative U4/U6.U5 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] dictyBase:DDB_G0274361
Pfam:PF03371 GenomeReviews:CM000151_GR EMBL:AAFI02000012
eggNOG:NOG241318 KO:K12849 InterPro:IPR005037 InterPro:IPR024767
PANTHER:PTHR23142 Pfam:PF12871 RefSeq:XP_643885.1
EnsemblProtists:DDB0233545 GeneID:8619311 KEGG:ddi:DDB_G0274361
InParanoid:Q86IV3 OMA:PYWKEKC ProtClustDB:CLSZ2515186
Uniprot:Q86IV3
Length = 515
Score = 389 (142.0 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 76/133 (57%), Positives = 97/133 (72%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
M L+ GG FGGN++PT F+CL++KMLQIQPE DI+ EFI+N+D+KYVR+LGA YLRL G
Sbjct: 90 MALESYGGCFGGNKQPTHFLCLLLKMLQIQPEMDIIKEFIENEDFKYVRILGAIYLRLVG 149
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
+DIY L+PLY D+R LR+K+ G VD+ I+ELLT +YSCDIALP I R NL
Sbjct: 150 KPVDIYNQLDPLYKDFRALRRKTDMGS-TKVFVDQFIEELLTTNYSCDIALPHIPSRANL 208
Query: 121 ETVGALEPRKSVL 133
L+ R+S L
Sbjct: 209 IQQSLLKERESPL 221
Score = 65 (27.9 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 310 DDGTDHPDPEIAEANRIRASLGLKPLK 336
D+ + EI + N +RA LGLKPLK
Sbjct: 489 DNNVPNEKTEIEQMNELRAKLGLKPLK 515
>GENEDB_PFALCIPARUM|PF11_0336 [details] [associations]
symbol:PF11_0336 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF03371 EMBL:AE014186 HOGENOM:HOG000173665 KO:K12849
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 OMA:PYWKEKC ProtClustDB:CLSZ2515186
RefSeq:XP_001348007.1 ProteinModelPortal:Q8II38
EnsemblProtists:PF11_0336:mRNA GeneID:810883 KEGG:pfa:PF11_0336
EuPathDB:PlasmoDB:PF3D7_1132600 Uniprot:Q8II38
Length = 386
Score = 333 (122.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 61/132 (46%), Positives = 92/132 (69%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
+ L ++GGT+GGNRKPT F+CL++K+LQIQP+KDI+ E+IKN+D+ Y+R LG FYLRL G
Sbjct: 52 INLKYVGGTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
+++Y +LEP+ DYRK+R + +G F ++D +D L + D+ P + KR L
Sbjct: 112 KSLEVYNHLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVL 171
Query: 121 ETVGALEPRKSV 132
E L+ RK++
Sbjct: 172 EENNLLQ-RKNL 182
Score = 47 (21.6 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 324 NRIRASLGLKPLK 336
N IR LG+KPLK
Sbjct: 374 NEIRKELGMKPLK 386
>UNIPROTKB|Q8II38 [details] [associations]
symbol:PF11_0336 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF03371 EMBL:AE014186 HOGENOM:HOG000173665 KO:K12849
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 OMA:PYWKEKC ProtClustDB:CLSZ2515186
RefSeq:XP_001348007.1 ProteinModelPortal:Q8II38
EnsemblProtists:PF11_0336:mRNA GeneID:810883 KEGG:pfa:PF11_0336
EuPathDB:PlasmoDB:PF3D7_1132600 Uniprot:Q8II38
Length = 386
Score = 333 (122.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 61/132 (46%), Positives = 92/132 (69%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
+ L ++GGT+GGNRKPT F+CL++K+LQIQP+KDI+ E+IKN+D+ Y+R LG FYLRL G
Sbjct: 52 INLKYVGGTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
+++Y +LEP+ DYRK+R + +G F ++D +D L + D+ P + KR L
Sbjct: 112 KSLEVYNHLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVL 171
Query: 121 ETVGALEPRKSV 132
E L+ RK++
Sbjct: 172 EENNLLQ-RKNL 182
Score = 47 (21.6 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 324 NRIRASLGLKPLK 336
N IR LG+KPLK
Sbjct: 374 NEIRKELGMKPLK 386
>POMBASE|SPBC19C2.08 [details] [associations]
symbol:prp38 "U4/U6 x U5 tri-snRNP complex subunit Prp38
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPBC19C2.08 Pfam:PF03371
GO:GO:0005829 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0046540 GO:GO:0045292 eggNOG:NOG241318 HOGENOM:HOG000173665
KO:K12849 InterPro:IPR005037 PANTHER:PTHR23142 PIR:T39799
RefSeq:NP_595693.1 IntAct:Q9UUD2 EnsemblFungi:SPBC19C2.08.1
GeneID:2540453 KEGG:spo:SPBC19C2.08 OMA:CLAFKLL OrthoDB:EOG4B01ZV
NextBio:20801580 Uniprot:Q9UUD2
Length = 210
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 59/131 (45%), Positives = 95/131 (72%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
+ L+++GG +G N++PT F+CL+ K+LQI PEK+I+ +++ ++KY+R L AFY+RLT
Sbjct: 56 VRLEYIGGQYG-NQRPTEFICLLYKLLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTW 114
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
D+++++ LEPL DYRKLR ++ + LT++DEV+D+LL + CDI+LP ++ R L
Sbjct: 115 DDVEVHQTLEPLLRDYRKLRIRT-NSEIRLTYLDEVVDDLLNAEVVCDISLPPLRSRLQL 173
Query: 121 ETVGALEPRKS 131
E + LEP S
Sbjct: 174 EDLDLLEPLSS 184
>ASPGD|ASPL0000077881 [details] [associations]
symbol:AN4672 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03371 EMBL:BN001303
HOGENOM:HOG000173665 InterPro:IPR005037 PANTHER:PTHR23142
OMA:CLAFKLL EnsemblFungi:CADANIAT00005761 Uniprot:C8VB07
Length = 250
Score = 212 (79.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 43/90 (47%), Positives = 62/90 (68%)
Query: 44 DYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTK 103
D+KY+R L AFY+RLT ++IY+ LEPL DYRKL+++ D F+LT++D+ +D+LLTK
Sbjct: 133 DFKYLRALAAFYVRLTWEPVEIYKTLEPLLLDYRKLKRRVRDS-FVLTYMDQFVDDLLTK 191
Query: 104 DYSCDIALPRIKKRWNLETVGALEPRKSVL 133
D C +L ++ R LE + LE R S L
Sbjct: 192 DRMCGTSLWKLPSRQQLEDLDLLEVRISPL 221
Score = 125 (49.1 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDD 44
+EL +GGT+G + K +PF+CL K+LQI P++DI++E++ D
Sbjct: 62 VELTFIGGTYGVSEKASPFLCLAFKLLQINPDRDIIMEYLNFSD 105
>UNIPROTKB|G4N721 [details] [associations]
symbol:MGG_03636 "Pre-mRNA-splicing factor 38A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] Pfam:PF03371
GO:GO:0005829 GO:GO:0000398 EMBL:CM001234 GO:GO:0046540 KO:K12849
InterPro:IPR005037 PANTHER:PTHR23142 RefSeq:XP_003716253.1
EnsemblFungi:MGG_03636T0 GeneID:2676512 KEGG:mgr:MGG_03636
Uniprot:G4N721
Length = 272
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 60/131 (45%), Positives = 86/131 (65%)
Query: 5 HLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIK--NDDYKYVRVLGAFYLRLTGTD 62
++GG G ++KPTPF+CL K+LQ+ P+ I+ E++K + +KY+R L FY+RLT T
Sbjct: 70 YIGGVVGQSQKPTPFLCLAFKLLQLGPDDSILAEYLKFGGEKFKYLRALAIFYVRLTRTS 129
Query: 63 IDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNLET 122
D++R LEP D RKLR+K G LT++DE D+LLTKD C +L ++ +R LE
Sbjct: 130 ADVFRTLEPFLEDRRKLRRKGRAGTS-LTYMDEFADDLLTKDRVCATSLFKLTRRDVLED 188
Query: 123 VGALEPRKSVL 133
+ LEPR S L
Sbjct: 189 LDELEPRVSPL 199
>CGD|CAL0000644 [details] [associations]
symbol:FGR16 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0000644 Pfam:PF03371
GO:GO:0071216 GO:GO:0036180 GO:GO:0009267 GO:GO:0036170
EMBL:AACQ01000114 EMBL:AACQ01000113 eggNOG:NOG241318
InterPro:IPR005037 PANTHER:PTHR23142 KO:K12851 RefSeq:XP_713908.1
RefSeq:XP_713966.1 GeneID:3644352 GeneID:3644411
KEGG:cal:CaO19.2303 KEGG:cal:CaO19.9839 Uniprot:Q59WJ8
Length = 233
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 47/169 (27%), Positives = 81/169 (47%)
Query: 5 HLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKN---DDYKYVRVLGAFYLRLTGT 61
++GGT NR P+ F+ + ++L+++P K+I+ ++ +++KY+ L Y+RLT
Sbjct: 64 YIGGTDSSNR-PSTFISCLFRLLELEPSKEIIKTYLTQLDFNEFKYLTALTLIYIRLTYP 122
Query: 62 DIDIYRYLEPLYNDYRKLRQKSG----DGR-----FILTHVDEVIDELLTKDYSCDIALP 112
++Y + + D+RKLR K D + + +T +DE +D LL + D+ LP
Sbjct: 123 SQEVYSIFDQYFQDFRKLRIKLKTPVFDSQKLPIHYKITFIDEWVDTLLVNERVIDLMLP 182
Query: 113 RIKKRWNLETVGALEPRKSVLXXXXXXXXXXXXXXXXXXGLEDGAYERD 161
R+ R L G L PR+ + ED YE D
Sbjct: 183 RLIPRTTLVERGQLAPRQYYIDVSDEEEKDAGEEEKDAGEEEDNDYESD 231
>UNIPROTKB|Q59WJ8 [details] [associations]
symbol:FGR16 "Potential spliceosomal U4/U6.U5 tri-snRNP
factor PRP38" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] CGD:CAL0000644
Pfam:PF03371 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113 eggNOG:NOG241318
InterPro:IPR005037 PANTHER:PTHR23142 KO:K12851 RefSeq:XP_713908.1
RefSeq:XP_713966.1 GeneID:3644352 GeneID:3644411
KEGG:cal:CaO19.2303 KEGG:cal:CaO19.9839 Uniprot:Q59WJ8
Length = 233
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 47/169 (27%), Positives = 81/169 (47%)
Query: 5 HLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKN---DDYKYVRVLGAFYLRLTGT 61
++GGT NR P+ F+ + ++L+++P K+I+ ++ +++KY+ L Y+RLT
Sbjct: 64 YIGGTDSSNR-PSTFISCLFRLLELEPSKEIIKTYLTQLDFNEFKYLTALTLIYIRLTYP 122
Query: 62 DIDIYRYLEPLYNDYRKLRQKSG----DGR-----FILTHVDEVIDELLTKDYSCDIALP 112
++Y + + D+RKLR K D + + +T +DE +D LL + D+ LP
Sbjct: 123 SQEVYSIFDQYFQDFRKLRIKLKTPVFDSQKLPIHYKITFIDEWVDTLLVNERVIDLMLP 182
Query: 113 RIKKRWNLETVGALEPRKSVLXXXXXXXXXXXXXXXXXXGLEDGAYERD 161
R+ R L G L PR+ + ED YE D
Sbjct: 183 RLIPRTTLVERGQLAPRQYYIDVSDEEEKDAGEEEKDAGEEEDNDYESD 231
>MGI|MGI:1914171 [details] [associations]
symbol:Prpf38b "PRP38 pre-mRNA processing factor 38 (yeast)
domain containing B" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] MGI:MGI:1914171
Pfam:PF03371 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:AL671894 GeneTree:ENSGT00700000104061 InterPro:IPR005037
PANTHER:PTHR23142 CTD:55119 eggNOG:NOG266713 HOGENOM:HOG000115682
KO:K12850 OrthoDB:EOG4NKBWJ OMA:SIEPESQ ChiTaRS:PRPF38B
EMBL:AK003895 EMBL:AK015938 EMBL:AK018126 EMBL:BC050900
EMBL:BC052077 IPI:IPI00320636 RefSeq:NP_080121.1 UniGene:Mm.51049
ProteinModelPortal:Q80SY5 STRING:Q80SY5 PhosphoSite:Q80SY5
PaxDb:Q80SY5 PRIDE:Q80SY5 Ensembl:ENSMUST00000029480 GeneID:66921
KEGG:mmu:66921 UCSC:uc008qzx.1 InParanoid:Q80SY5 NextBio:323021
Bgee:Q80SY5 Genevestigator:Q80SY5 Uniprot:Q80SY5
Length = 542
Score = 115 (45.5 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 7 GGTFG---GNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDI 63
GG G G T F CL+ K+ ++ + V+ I + D Y+R LG Y+R T
Sbjct: 115 GGVRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPT 173
Query: 64 DIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKK--RWNLE 121
D++ + E +D L K+G G ++T + E++ LTK PRI + N++
Sbjct: 174 DLWDWFESFLDDEEDLDVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRIPVPVQKNID 231
Query: 122 TVGALEPRK 130
PRK
Sbjct: 232 QQIKTRPRK 240
Score = 43 (20.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRA 297
K+H+RS R+ R + G R+
Sbjct: 422 KKHSRSRSRERKHRSRSRNAGKRS 445
Score = 36 (17.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRAE 298
+R + RRDRD ++ G+ E
Sbjct: 356 EREKENERGRRRDRDYDKERGSDRE 380
>RGD|1562940 [details] [associations]
symbol:Prpf38b "PRP38 pre-mRNA processing factor 38 (yeast)
domain containing B" species:10116 "Rattus norvegicus" [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] RGD:1562940
Pfam:PF03371 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GeneTree:ENSGT00700000104061 InterPro:IPR005037 PANTHER:PTHR23142
CTD:55119 eggNOG:NOG266713 HOGENOM:HOG000115682 KO:K12850
OrthoDB:EOG4NKBWJ OMA:SIEPESQ EMBL:BC079264 IPI:IPI00389442
RefSeq:NP_001019476.1 UniGene:Rn.7210 ProteinModelPortal:Q6AXY7
PRIDE:Q6AXY7 Ensembl:ENSRNOT00000027738 GeneID:499691
KEGG:rno:499691 UCSC:RGD:1562940 InParanoid:Q6AXY7 NextBio:703698
Genevestigator:Q6AXY7 Uniprot:Q6AXY7
Length = 542
Score = 115 (45.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 7 GGTFG---GNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDI 63
GG G G T F CL+ K+ ++ + V+ I + D Y+R LG Y+R T
Sbjct: 114 GGVRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPT 172
Query: 64 DIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKK--RWNLE 121
D++ + E +D L K+G G ++T + E++ LTK PRI + N++
Sbjct: 173 DLWDWFESFLDDEEDLDVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRIPVPVQKNID 230
Query: 122 TVGALEPRK 130
PRK
Sbjct: 231 QQIKTRPRK 239
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRAE 298
+R + RRDRD +D G E
Sbjct: 355 EREKENERGRRRDRDYDKDRGNDRE 379
>UNIPROTKB|Q5VTL8 [details] [associations]
symbol:PRPF38B "Pre-mRNA-splicing factor 38B" species:9606
"Homo sapiens" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] Pfam:PF03371 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 EMBL:AL591719 EMBL:AL160171 InterPro:IPR005037
PANTHER:PTHR23142 CTD:55119 eggNOG:NOG266713 KO:K12850
OrthoDB:EOG4NKBWJ EMBL:AK001192 EMBL:BC007757 EMBL:BC016296
EMBL:BC024275 EMBL:BC040127 EMBL:BC053838 EMBL:BC107801
EMBL:BC130346 EMBL:BC132963 EMBL:AY211915 IPI:IPI00018098
IPI:IPI00647851 RefSeq:NP_060531.2 UniGene:Hs.342307
ProteinModelPortal:Q5VTL8 IntAct:Q5VTL8 MINT:MINT-1746333
STRING:Q5VTL8 PhosphoSite:Q5VTL8 DMDM:74746965 PaxDb:Q5VTL8
PRIDE:Q5VTL8 Ensembl:ENST00000370021 Ensembl:ENST00000370022
Ensembl:ENST00000370025 GeneID:55119 KEGG:hsa:55119 UCSC:uc001dvv.4
GeneCards:GC01P109234 HGNC:HGNC:25512 neXtProt:NX_Q5VTL8
PharmGKB:PA142671126 HOVERGEN:HBG101033 InParanoid:Q5VTL8
OMA:SIEPESQ ChiTaRS:PRPF38B GenomeRNAi:55119 NextBio:58764
Bgee:Q5VTL8 CleanEx:HS_PRPF38B Genevestigator:Q5VTL8 Uniprot:Q5VTL8
Length = 546
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 7 GGTFG---GNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDI 63
GG G G T F CL+ K+ ++ + V+ I + D Y+R LG Y+R T
Sbjct: 114 GGVRGVGTGGIVSTAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPT 172
Query: 64 DIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKK--RWNLE 121
D++ + E +D L K+G G ++T + E++ LTK PRI + N++
Sbjct: 173 DLWDWFESFLDDEEDLDVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRIPVPVQKNID 230
Query: 122 TVGALEPRK 130
PRK
Sbjct: 231 QQIKTRPRK 239
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 274 KRHARSSMSPRRDRDEPEDVGTRAE 298
+R + RRDRD ++ G E
Sbjct: 355 EREKENERGRRRDRDYDKERGNERE 379
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.141 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 337 205 0.00096 111 3 11 22 0.37 33
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 593 (63 KB)
Total size of DFA: 172 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.99u 0.08s 16.07t Elapsed: 00:00:03
Total cpu time: 15.99u 0.08s 16.07t Elapsed: 00:00:03
Start: Fri May 10 00:22:07 2013 End: Fri May 10 00:22:10 2013