BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019667
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1
Length = 312
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELKFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F+L HVDE I ELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E LEPR S LE+D
Sbjct: 172 EEAEQLEPRVSALEEDM 188
>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1
Length = 312
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E LEPR S LE+D
Sbjct: 172 EEAEQLEPRVSALEEDM 188
>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2
SV=1
Length = 312
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E LEPR S LE+D
Sbjct: 172 EEAEQLEPRVSALEEDM 188
>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1
Length = 312
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E LEPR S LE+D
Sbjct: 172 EEAEQLEPRVSALEEDM 188
>sp|Q0P5I6|PR38A_BOVIN Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1
Length = 312
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T ID Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR+ L
Sbjct: 112 TAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E LEPR S LE+D
Sbjct: 172 EEAEQLEPRVSALEEDM 188
>sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1
Length = 313
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 109/137 (79%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR+LGA Y+RLTG
Sbjct: 52 MELKFVGGVYGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T +D Y+YLEPLYNDYRK++ ++ +G F L HVDE IDELL + CDI LPR++KR L
Sbjct: 112 TSVDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E L+PR S LE+D
Sbjct: 172 EEAELLDPRISALEEDL 188
>sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1
Length = 312
Score = 194 bits (492), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 109/137 (79%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL +GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR LGA Y+RLTG
Sbjct: 52 MELKFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T D Y+YLEPLYNDYRK++ ++ DG F L HVDE ID+LL ++ CD+ LPR++KR+ L
Sbjct: 112 TATDCYKYLEPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E L+PR S LE+D
Sbjct: 172 EETEQLDPRVSALEEDM 188
>sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2
SV=1
Length = 312
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 110/137 (80%)
Query: 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTG 60
MEL ++GG +GGN KPTPF+CL +KMLQIQPEKDI+VEFIKN+D+KYVR LGA Y+RLTG
Sbjct: 52 MELKYVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTG 111
Query: 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNL 120
T D Y+YLEPLYNDYRK++ ++ +G F L HVDE ID+LL ++ CD+ LPR++KR+ L
Sbjct: 112 TATDCYKYLEPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVL 171
Query: 121 ETVGALEPRKSVLEDDF 137
E L+PR S LE+D
Sbjct: 172 EETEQLDPRVSALEEDM 188
>sp|Q9UUD2|PRP38_SCHPO Pre-mRNA-splicing factor 38 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp38 PE=3 SV=1
Length = 210
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 87/115 (75%), Gaps = 2/115 (1%)
Query: 3 LDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTD 62
L+++GG +G N++PT F+CL+ K+LQI PEK+I+ +++ ++KY+R L AFY+RLT D
Sbjct: 58 LEYIGGQYG-NQRPTEFICLLYKLLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDD 116
Query: 63 IDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKR 117
+++++ LEPL DYRKLR ++ + LT++DEV+D+LL + CDI+LP ++ R
Sbjct: 117 VEVHQTLEPLLRDYRKLRIRT-NSEIRLTYLDEVVDDLLNAEVVCDISLPPLRSR 170
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 80/108 (74%), Gaps = 5/108 (4%)
Query: 170 RERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRL 229
RE+DRD+ + R +D+D + + R++ + +E ++G+++DRD+ R++DR++ RD++R ++
Sbjct: 802 REKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKV 861
Query: 230 RD-DREYGRERDRDREREGRDRER---RDRDRGRRRSRSRSRSRSRDR 273
R+ DR+ RE+DRD+ RE +DRE+ RDRD+GR + R + + ++R++
Sbjct: 862 REKDRDKVREKDRDKLRE-KDREKIRERDRDKGREKDRDKEQVKTREK 908
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 170 RERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRL 229
RE+D+D+ + + +DRD R+ DRD+ R ++RD+ R++DRD+ R++DR++ R+++R ++
Sbjct: 826 REKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKI 885
Query: 230 RD-DREYGRERDRDREREGRDRERRDRDRGRRRSRSRSRSRSRDRKRHARSSMSPRRDRD 288
R+ DR+ GRE+DRD+E + + RE +D+++ R + R + R + RD+ R +R+++
Sbjct: 886 RERDRDKGREKDRDKE-QVKTRE-KDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKE 943
Query: 289 EPED 292
ED
Sbjct: 944 LTED 947
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 76/119 (63%), Gaps = 12/119 (10%)
Query: 136 DFEEEEEKEENDQLDDGLE---DGAYERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDY 192
+ E+ EK+++ +L+ G E D E+ R RE+DRD+ RD +DRD R+
Sbjct: 809 EMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRD----KDRDKVREK 864
Query: 193 DRDRGRGRERDRGRDRDRDRDRDRD----RERDRDRNRYRLRD-DREYGRERDRDRERE 246
DRD+ R ++RD+ R++DR++ R+RD RE+DRD+ + + R+ D+E R +DRD+ERE
Sbjct: 865 DRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKERE 923
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 77/117 (65%), Gaps = 13/117 (11%)
Query: 172 RDRDRRRDSYRYRDRDYDRDYDRDRGRG--RERDRGRDRDRDRDRDRDRERDRDRNRYRL 229
RD+ R +D + R++D D++ ++DR + +E ++GR++D+D++ ++ RE+DRD+ +
Sbjct: 754 RDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKA 813
Query: 230 RD-----DREYGRERDRDRERE-GRDRER-----RDRDRGRRRSRSRSRSRSRDRKR 275
R+ + E GRE+D+D+E E G++++R +DRD+ R + R + R + RD+ R
Sbjct: 814 REKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVR 870
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 170 RERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRL 229
RE+D+D+ + R +DRD + + R++ + +E ++GR++D+D++ ++ +E+DRD+ R +
Sbjct: 790 REKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREK- 848
Query: 230 RDDREYGRERDRDREREG-RDRER-RDRDRGRRRSRSRSRSRSRDRKR 275
DR+ R++DRD+ RE RD+ R +DRD+ R + R + R R RD+ R
Sbjct: 849 --DRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGR 894
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 74/123 (60%), Gaps = 17/123 (13%)
Query: 170 RERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRL 229
+ER +DR ++ + RD++ + D+ R + E+ R +D+D++ ++DR++ +D++ + R
Sbjct: 732 KERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGRE 791
Query: 230 RD---DREYGRERDRDRERE-------------GRDRER-RDRDRGRRRSRSRSRSRSRD 272
+D + E GRE+DRD+E E GR++++ ++ ++G+ + R + R + RD
Sbjct: 792 KDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRD 851
Query: 273 RKR 275
+ R
Sbjct: 852 KVR 854
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 83/145 (57%), Gaps = 19/145 (13%)
Query: 184 RDRDYDRDYDRDRGRGRERDRGRDRDRD----------RDRDRDRERDRDRNRYRLRD-- 231
R+++ ++ D++R + +E+D+ + RD++ +DR +++E+ RD+ + + RD
Sbjct: 698 REKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKK 757
Query: 232 ---DREYGRERDRDREREGRDRER---RDRDRGRRRSRSRSRSRSRDRKRHARSSMSPRR 285
D E RE+D+D+E E +DRE+ ++ ++GR + + + + R++ R + +
Sbjct: 758 RSKDLEKCREKDQDKELE-KDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREK 816
Query: 286 DRDEPEDVGTRAEPKKKKEKKEKKD 310
D+D+ + G + K+ EK ++KD
Sbjct: 817 DQDKELEKGREKDQDKELEKGQEKD 841
>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=2
SV=1
Length = 542
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 20 MCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKL 79
CL+ K+ ++ + V+ I + D Y+R LG Y+R T D++ + E +D L
Sbjct: 129 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 188
Query: 80 RQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRI 114
K+G G ++T + E++ LTK PRI
Sbjct: 189 DVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRI 221
>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1
Length = 546
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 20 MCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKL 79
CL+ K+ ++ + V+ I + D Y+R LG Y+R T D++ + E +D L
Sbjct: 129 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 188
Query: 80 RQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRI 114
K+G G ++T + E++ LTK PRI
Sbjct: 189 DVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRI 221
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
Length = 501
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 20 MCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKL 79
CL+ K+ ++ + V+ I + D +R LG Y+R T D+ + + +D +L
Sbjct: 107 FCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDWYDEFLDDEEEL 166
Query: 80 RQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRI 114
K+G G ++T V E++ LTK PRI
Sbjct: 167 DVKAGGG-CVMT-VGEMLRSFLTKLEWFSTLFPRI 199
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 176 RRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRLRDDREY 235
R +D ++R+RD ++ D++ + R+ ++ +++D ++ ++ ++ R +D +++ +D ++
Sbjct: 70 REKDGEKHRERDGEKHRDKNGEKHRDGEKHKEKDIEKHKEVEKHRVKDGEKHKEKDVEKH 129
Query: 236 GRERDRDREREGRDRERRDRDRGRRRSRSRSRSRSRDRKRHARSSMSPRRDRDEPEDVGT 295
+E+D ++ R+G + RD+DR +++ S + + SP R +DEPED G
Sbjct: 130 -KEKDVEKHRDGEKHKHRDKDREKKKEEKMKSSSGGVKVKKENGFSSPVRVKDEPEDQGF 188
Query: 296 RAEPKKKKEKKEKKDDGTDHPDPEI 320
PK+ K K ++D D+ +I
Sbjct: 189 YVSPKENKAMKRPREDDEDYKPKKI 213
>sp|Q5UPJ3|YL116_MIMIV Uncharacterized protein L116 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L116 PE=3 SV=1
Length = 563
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 166 RSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRN 225
RSP R R R R YR +R R +R R R ER R R +R R DR R N
Sbjct: 138 RSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSHYRSPDRSHYRSHN 197
Query: 226 R------YRLRDDREYGRERDRDREREGRDRERRDRDRGRRRSRSRSRSRSRDRKRHARS 279
+ YR + Y R +R R +R RD R +S RSR SRD R
Sbjct: 198 KSTERSHYRSTERSRY-RSPERSHYRSPEISRKRSRDESREKSLGRSRKMSRDESREKSL 256
Query: 280 SMSPRRDRDEPEDVGTRAEPKKKKEKKEKKDD 311
+ S +R RDE ++ EP+ K+ +EK D
Sbjct: 257 NESHKRSRDESQE--KSYEPRPAKKLREKSPD 286
>sp|B3KS81|SRRM5_HUMAN Serine/arginine repetitive matrix protein 5 OS=Homo sapiens
GN=SRRM5 PE=1 SV=3
Length = 715
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 159 ERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDR 218
+RD+ RSP + RDR R R Y+ RDR R ++ R R R + RDR R R ++
Sbjct: 398 QRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNK 457
Query: 219 ERDRDRNRY--------------RLRDDREYG---RERDRDRERE-GRDRE-RRDRDRGR 259
RD R+R + RD + G +ERD R R ++R+ R+ R +
Sbjct: 458 ARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSK 517
Query: 260 RRSRSRSRSRSRDRKRHARSSMSPRRDRD 288
R RSRS S++R+R R S SP ++RD
Sbjct: 518 ERDHRRSRSPSKERQR--RQSRSPNKERD 544
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 160 RDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYD--RDRGRGRERDRG----------RD 207
RD RSP + RD R R Y+ RDR R + RD R R ++ ++
Sbjct: 423 RDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKE 482
Query: 208 RDRDRDRDRDRERDRDRNRY-----RLRDDREYGRERDRDRERE-GRDRERRDRDRGRRR 261
RD + +ERD R+R + R R +ERD R R ++R+RR R +
Sbjct: 483 RDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQ-SRSPNK 541
Query: 262 SRSRSRSRSRDRKRHARSSMSPRRDRD 288
R RS+SRS +R R S SP ++RD
Sbjct: 542 ERDRSQSRSPSEEREHRQSRSPSKERD 568
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 153 LEDGAYERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDR 212
L + ERD+ RSP++ER + R S + RD R ++R R + R ++RDR +
Sbjct: 488 LGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQ 547
Query: 213 DRDRDRERDRDRNRYRLRDDREYGRERDRDRERE 246
R ER+ R R +ERDR R R
Sbjct: 548 SRSPSEERE-------HRQSRSPSKERDRRRWRS 574
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 159 ERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDR 218
ERD+ SP +E R + + RD R ++ R R R R + RDR R R ++
Sbjct: 374 ERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNK 433
Query: 219 ERD--RDRNRYRLRD---DREYGRERDRDRERE 246
RD R R+ Y+ RD R + RD R R
Sbjct: 434 ARDCSRSRSPYKARDRSRSRSPNKARDHSRSRS 466
>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1
Length = 542
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 20 MCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKL 79
CL+ K+ ++ + V+ I + D Y+R LG Y+R T D++ + E +D L
Sbjct: 130 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 189
Query: 80 RQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKK--RWNLETVGALEPRKSVLEDDF 137
K+G G ++T + E++ LTK PRI + N++ PRK + +D
Sbjct: 190 DVKAGGG-CVMT-IGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRK-IKKDGK 246
Query: 138 EEEEEKEENDQLDDGLEDGAYERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDR 196
E EE + + + R S + DR+ +R+ +R R
Sbjct: 247 EGIEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSF-DRELEREKERQR 304
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Query: 170 RERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRD 223
RER +DR RD + RDR+ D+ R++ R RE+DR R+++R+RD+DRD++++R+
Sbjct: 206 RERTKDRDRDKDKSRDREKDKT--REKEREREKDRNREKERERDKDRDKKKERE 257
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
Query: 187 DYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERDRDRNRYRLRDDREYGRERDRDRERE 246
D R+ +R + R R++D+ RDR++D+ R+++RER++DRNR + +RE ++RD+ +ERE
Sbjct: 201 DKGRERERTKDRDRDKDKSRDREKDKTREKEREREKDRNREK---ERERDKDRDKKKERE 257
Query: 247 G 247
Sbjct: 258 S 258
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 12/113 (10%)
Query: 169 TRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRERD---RDRN 225
+RERD DR R+ R+RD+D RD+DR+R R +RDR+R+ DR ++
Sbjct: 2124 SRERDWDRPREWDRHRDKDSSRDWDRNRER--------SANRDREREADRGKEWDRSRER 2175
Query: 226 RYRLRDDREYGRERDRDREREGRDRERRDRDRGR-RRSRSRSRSRSRDRKRHA 277
+R+ R+RDR R RE + RDR+RGR R+ RS+S+ +RD K A
Sbjct: 2176 SRNRERERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDPKPEA 2228
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 25/140 (17%)
Query: 194 RDRGRGRERDR---GRDRDRDR-DRDRDRERDRDRNRYRLRDDREYGRERDRDREREGRD 249
RD GRER+R DR+R+R + DRER R + Y DRE RE D+ER+ R+
Sbjct: 1135 RDNSTGRERNRENSSYDRERNRGNSSYDRERKRGNSSY----DRERNRESSYDKERKNRN 1190
Query: 250 RERRDRDRGRRRSRSRSR----------------SRS-RDRKRHARSSMSPRRDRDEPED 292
DR R R RSRS R SRS +D +R RSS + R DR E D
Sbjct: 1191 AVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSD 1250
Query: 293 VGTRAEPKKKKEKKEKKDDG 312
G R++ ++ ++ E+ D G
Sbjct: 1251 RGERSDRGERSDRGERSDRG 1270
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 157 AYERDYHHGRSPTRER-------DRDRRRDSYRYRDRDYDRDYDRDRG----RGRERDRG 205
+YER S RE+ ++D RR R+ DR DRG RG DRG
Sbjct: 1205 SYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSDRGERSDRGERSDRG 1264
Query: 206 RDRDRDRDRDRDRERDRDRNRYRLRDDREYGRERDRDREREGRDRERRDRDRG 258
DR DR DR++ R R ++ RERDRDR+ +G+ +R+RD G
Sbjct: 1265 ERSDRGERSDRGERSDREKERSRAKE-----RERDRDRDLKGQRERKRERDDG 1312
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 38.5 bits (88), Expect = 0.069, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 167 SPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRE--RDRDR 224
SP E R R++ + +D R+ + + R +RD R+ R RE R+ R
Sbjct: 834 SPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKR 893
Query: 225 NRYRLRDD------REYGRERDRDREREG------RDRERRDRDRGRRRSRSRSRSRSRD 272
++ R++D R RER+ DR+ + + R R R SR R++S+S
Sbjct: 894 SQPRVKDSSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSS 953
Query: 273 RKRHARSSMSPRRDR---------DEPEDVGTRAEPKKKKE--KKEKKDDGTDHPDPEIA 321
R R S SPR D + +P+K+ E +KEK D D DP A
Sbjct: 954 FGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADDPNSA 1013
Query: 322 EANR 325
+ +R
Sbjct: 1014 DKHR 1017
Score = 35.4 bits (80), Expect = 0.56, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 237 RERDRDREREGRDRERRDRDRGRRRSRSRSRSRSRDRKRHARSSMSPRRDRDEPEDVGTR 296
RE ++ + + + RGR++SRS+S + R+R S SP+RD
Sbjct: 821 RETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSES 880
Query: 297 AEPKKKKEKKEKK 309
P+++ ++ K+
Sbjct: 881 LSPRRETSRENKR 893
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 169 TRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDR-DRDRDRDRERDRDRNRY 227
++ R+++R ++ + DRD R+ DRDR R ER++ R R + DRDR+
Sbjct: 190 SKPREKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDR 249
Query: 228 RLRDDREYGRERDRDRER---EGRDRERRDRDRGRRRSRSRSRSRSRD 272
+ G+E++R ++R +G+DRERR G +R R +SRD
Sbjct: 250 DRDRRSDGGKEKERQKDRDRDKGKDRERRKSKNG-EHTRDPDREKSRD 296
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 26/127 (20%)
Query: 169 TRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDR---------------------GRD 207
+E DRDR R+ R R+RD +R+ R R + ++RDR G++
Sbjct: 202 AKEADRDRHREPDRDRNRDGEREKARARAK-QDRDRNNKDRDRETERDRDRDRRSDGGKE 260
Query: 208 RDRDRDRDRDRERDRDRNRYRLRDDREYGRERDRDREREGRDRERR-DRDRGRRRSRSRS 266
++R +DRDRD+ +DR+R + + + E+ R+ DR++ R+ E++ D G +S +
Sbjct: 261 KERQKDRDRDKGKDRERRKSK---NGEHTRDPDREKSRDADKSEKKADISVGASKSSTLK 317
Query: 267 RSRSRDR 273
S+ R +
Sbjct: 318 ASKRRSK 324
>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2
Length = 1190
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 161 DYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRDRER 220
+ H GRS + E +R R R R R+ D DR RGR E RG D+D R RDR R R
Sbjct: 162 NSHGGRSRSWEDSPERGRPHERARSRERDLSRDRSRGRSLE--RGLDQDHARTRDRSRGR 219
Query: 221 DRDRN 225
+R
Sbjct: 220 SLERG 224
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 137 FEEEEEKEENDQLDDGLEDGAYERDYHHGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDR 196
E E+ E N + D + D + + GR E D + + RD++R+ R
Sbjct: 1 MSEFEDHEGNGTVADAIYD-----EENGGRDGEIEDQLDSKP---KRESRDHERETSRS- 51
Query: 197 GRGRERDRGRDRDRDRDRDRDRERDRDRNRYRLRDDREYGRERDRDREREGRDRERRD 254
+ RER++GRD+DR+RD + R R RDR D E +ER RD++R+ R+R R
Sbjct: 52 -KDREREKGRDKDRERDSEVSR-RSRDR-------DGEKSKERSRDKDRDHRERHHRS 100
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 164 HGRSPTRERDRDRRRDSYRYRDRDYDRDYDRDRGRGRERDRGRDRDRDRDRDRD-RERDR 222
H R +R +DR+R + RD+D +RD + R R R+RD + ++R RD+DRD RER
Sbjct: 44 HERETSRSKDREREKG----RDKDRERDSEVSR-RSRDRDGEKSKERSRDKDRDHRERHH 98
Query: 223 DRNRYR 228
+R+R
Sbjct: 99 RSSRHR 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,756,231
Number of Sequences: 539616
Number of extensions: 7287909
Number of successful extensions: 122721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 1379
Number of HSP's that attempted gapping in prelim test: 48715
Number of HSP's gapped (non-prelim): 22596
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)