Query 019667
Match_columns 337
No_of_seqs 264 out of 393
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2889 Predicted PRP38-like s 100.0 4.7E-47 1E-51 337.6 6.3 148 1-148 52-199 (204)
2 PF03371 PRP38: PRP38 family; 100.0 4.1E-44 8.8E-49 320.7 7.7 124 2-126 49-172 (172)
3 KOG2888 Putative RNA binding p 100.0 4.2E-40 9.2E-45 316.0 8.4 128 2-131 92-238 (453)
4 TIGR01642 U2AF_lg U2 snRNP aux 97.1 0.0006 1.3E-08 69.2 5.5 9 316-324 124-132 (509)
5 KOG4676 Splicing factor, argin 96.8 0.00057 1.2E-08 68.7 2.0 6 37-42 68-73 (479)
6 TIGR01642 U2AF_lg U2 snRNP aux 96.8 0.0013 2.8E-08 66.7 4.4 11 318-328 121-131 (509)
7 KOG0113 U1 small nuclear ribon 96.7 0.0017 3.8E-08 63.4 3.9 71 12-86 94-165 (335)
8 PF12871 PRP38_assoc: Pre-mRNA 96.1 0.0052 1.1E-07 50.6 3.4 22 128-149 1-22 (97)
9 KOG3263 Nucleic acid binding p 95.6 0.013 2.8E-07 53.3 3.7 14 314-327 137-150 (196)
10 KOG2217 U4/U6.U5 snRNP associa 95.3 0.014 3.1E-07 62.1 3.4 21 316-336 51-71 (705)
11 KOG2888 Putative RNA binding p 94.6 0.024 5.2E-07 56.4 2.8 18 92-109 173-190 (453)
12 KOG4368 Predicted RNA binding 81.5 1.3 2.8E-05 47.3 3.2 9 100-108 511-519 (757)
13 KOG0796 Spliceosome subunit [R 76.8 1.3 2.8E-05 44.0 1.4 14 90-103 124-137 (319)
14 KOG0796 Spliceosome subunit [R 76.0 1.5 3.3E-05 43.5 1.7 9 67-75 86-94 (319)
15 KOG0113 U1 small nuclear ribon 68.9 5.6 0.00012 39.5 3.8 10 22-31 8-17 (335)
16 KOG0151 Predicted splicing reg 59.2 6.7 0.00014 43.0 2.4 6 22-27 470-475 (877)
17 KOG1847 mRNA splicing factor [ 54.5 7.7 0.00017 42.1 2.0 19 33-51 430-448 (878)
18 KOG0147 Transcriptional coacti 47.6 26 0.00057 37.2 4.6 12 93-104 5-16 (549)
19 KOG1567 Ribonucleotide reducta 46.1 19 0.00041 35.8 3.0 28 14-41 222-249 (344)
20 PF07315 DUF1462: Protein of u 39.4 29 0.00063 28.8 2.7 45 61-111 17-72 (93)
21 KOG0835 Cyclin L [General func 37.7 18 0.00038 36.5 1.4 9 107-115 197-205 (367)
22 KOG0835 Cyclin L [General func 36.5 23 0.0005 35.7 2.1 43 14-56 139-192 (367)
23 KOG4246 Predicted DNA-binding 35.5 18 0.00039 40.5 1.2 18 109-126 190-207 (1194)
24 PF06762 LMF1: Lipase maturati 35.1 46 0.001 33.9 4.0 41 16-60 312-359 (384)
25 KOG4246 Predicted DNA-binding 34.7 19 0.00042 40.3 1.3 11 25-35 117-127 (1194)
26 PF07280 DUF1443: Protein of u 34.4 21 0.00044 25.7 1.0 30 18-48 6-35 (43)
27 KOG1847 mRNA splicing factor [ 29.5 34 0.00074 37.4 2.1 9 321-329 856-864 (878)
28 KOG0669 Cyclin T-dependent kin 28.9 47 0.001 33.0 2.8 35 24-58 67-103 (376)
29 smart00777 Mad3_BUB1_I Mad3/BU 27.9 62 0.0013 28.0 3.1 27 43-70 64-90 (125)
30 KOG0670 U4/U6-associated splic 27.5 89 0.0019 34.0 4.6 12 93-104 48-59 (752)
31 COG1019 Predicted nucleotidylt 27.0 44 0.00095 30.3 2.0 6 5-10 9-14 (158)
32 COG4837 Uncharacterized protei 26.3 53 0.0012 27.6 2.2 44 61-110 24-78 (106)
33 KOG2548 SWAP mRNA splicing reg 26.3 29 0.00064 37.0 0.9 19 89-107 124-142 (653)
34 KOG2226 Proteins containing re 26.2 1.3E+02 0.0028 33.3 5.6 100 12-113 299-425 (786)
35 cd02164 PPAT_CoAS phosphopante 24.4 46 0.001 29.1 1.7 7 5-11 3-9 (143)
36 PF07420 DUF1509: Protein of u 24.2 51 0.0011 32.9 2.0 18 49-66 110-127 (377)
37 KOG0666 Cyclin C-dependent kin 21.9 53 0.0011 33.5 1.7 23 14-37 309-331 (438)
No 1
>KOG2889 consensus Predicted PRP38-like splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-47 Score=337.58 Aligned_cols=148 Identities=64% Similarity=1.090 Sum_probs=143.2
Q ss_pred CcccccCCccCCCCCCCchhHHHHHHhccCCCHHHHHHHhcCCCcceeeecccchhhhccchHHHHHHhhhhhhhhhhhh
Q 019667 1 MELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLR 80 (337)
Q Consensus 1 ~~l~~iGg~~g~~~~Ps~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p~ely~~lEp~l~DyrKlr 80 (337)
|+|.||||.||||.+||||+||.+|||||+|+++|+.+||.+.+||||+|||||||||||...++|+||+|||+||+||+
T Consensus 52 m~l~~lgg~yGgn~kpt~fKOG~lkmLqiqpeK~i~~efi~~~~fkY~ralgafYlRLt~~~~~~y~ylepl~nDyRKir 131 (204)
T KOG2889|consen 52 MELLYLGGKYGGNSKPTPFLCLDLKMLQIQPEKEIGSEFIMNHDFKYVRALGAFYLRLTGTDVDVYKYLEPLLNDYRKIR 131 (204)
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHcCCCCCcccchHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceeeeeHHHHHHHHHhccccccccCCCcccchhHhHhccCCCccccchhhhhHHHhhhhhhc
Q 019667 81 QKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNLETVGALEPRKSVLEDDFEEEEEKEENDQ 148 (337)
Q Consensus 81 ~~~~dg~~~~~~~defvd~LL~~~~~~~i~LPRip~R~~lE~~~~LepR~s~Le~~~Ee~eeeeEee~ 148 (337)
+.+.+|++++||||+|||+||++.+||+|+|||+.+|++||+++.|+|++|.|+++++++++.++++.
T Consensus 132 ~~~~~g~~~l~ylDe~iDdLL~~~r~cdI~Lprl~kr~~le~~~~lep~~s~ld~d~~~~e~~~~~e~ 199 (204)
T KOG2889|consen 132 VVNGQGNRTLMYLDEVIDDLLNKSRICDIHLPRLDKRWQLEELDLLEPRKSSLDEDDDDEESSEEEEE 199 (204)
T ss_pred hhcCCCceeeeeHHHHHHHHhhhcceeccccchhhhhhhhhhhccccccccccccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999887766663
No 2
>PF03371 PRP38: PRP38 family; InterPro: IPR005037 Members of this family are related to the pre mRNA splicing factor PRP38 from yeast [], therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation [].
Probab=100.00 E-value=4.1e-44 Score=320.74 Aligned_cols=124 Identities=48% Similarity=0.917 Sum_probs=120.0
Q ss_pred cccccCCccCCCCCCCchhHHHHHHhccCCCHHHHHHHhcCCCcceeeecccchhhhccchHHHHHHhhhhhhhhhhhhh
Q 019667 2 ELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRQ 81 (337)
Q Consensus 2 ~l~~iGg~~g~~~~Ps~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p~ely~~lEp~l~DyrKlr~ 81 (337)
.|+|||||+||+++||+|||||||||||+|+++||.+||++.+||||||||||||||+++|.++|+||+|||+||+||++
T Consensus 49 ~v~~ig~~~~g~~~Ps~f~CLL~KLl~l~pt~~~v~~~l~~~d~kYiralg~lYlR~~~~p~~~~~~lep~l~D~rkl~~ 128 (172)
T PF03371_consen 49 IVRYIGPWYGGNRRPSPFFCLLYKLLQLRPTKEQVKELLNNDDFKYIRALGFLYLRYVGPPEELYKWLEPYLNDYRKLRV 128 (172)
T ss_pred HhhhhhcccCCCCCCchHHHHHHHHHhcccCHHHHHHHHcCCCccHHHHHHHHHheeeCCHHHHHHHHHHHhccceeeee
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeeeHHHHHHHHHhccccccccCCCcccchhHhHhccC
Q 019667 82 KSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNLETVGAL 126 (337)
Q Consensus 82 ~~~dg~~~~~~~defvd~LL~~~~~~~i~LPRip~R~~lE~~~~L 126 (337)
+..+|. ++|||||||++||++++||||+|||||++.++|+.++|
T Consensus 129 ~~~~~~-~~~~~de~vd~LL~~~~~~~~~LPrlp~r~~~e~~~~~ 172 (172)
T PF03371_consen 129 RNDGGD-KITHMDEFVDDLLTKDRYCGTILPRLPKRIVLEIDDEL 172 (172)
T ss_pred ecCCCc-eeEEHHHHHHHHhhhCcEecccCCCCCchHHHHhhccC
Confidence 988664 89999999999999999999999999999999998876
No 3
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=316.02 Aligned_cols=128 Identities=23% Similarity=0.447 Sum_probs=116.5
Q ss_pred cccccCCccCCC-------------CCC------CchhHHHHHHhccCCCHHHHHHHhcCCCcceeeecccchhhhccch
Q 019667 2 ELDHLGGTFGGN-------------RKP------TPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTD 62 (337)
Q Consensus 2 ~l~~iGg~~g~~-------------~~P------s~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p 62 (337)
.|+||.||.+|+ +-| |++||||||||+|++|.+||++||+|.+++|||||||||||||.+|
T Consensus 92 qVkHvEPWekGsrkt~gqtgmCggvRGvgaggivSTAyCLLYklftlklTrKQ~~gllnhtdSpYIRalGFmYiRYtqpp 171 (453)
T KOG2888|consen 92 QVKHVEPWEKGSRKTQGQTGMCGGVRGVGAGGIVSTAYCLLYKLFTLKLTRKQLIGLLNHTDSPYIRALGFMYIRYTQPP 171 (453)
T ss_pred HHhccCchhcCCccccccccccccccccCcCcchhhHHHHHHHHHHHHhHHHHHHHHhhcCCchhhhhheeeEEeecCCh
Confidence 467777775444 445 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCceeeeeHHHHHHHHHhccccccccCCCcccchhHhHhccCCCccc
Q 019667 63 IDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKKRWNLETVGALEPRKS 131 (337)
Q Consensus 63 ~ely~~lEp~l~DyrKlr~~~~dg~~~~~~~defvd~LL~~~~~~~i~LPRip~R~~lE~~~~LepR~s 131 (337)
.+||.||||||+|.+.|.++...| .+|||+++|..|||+..||+|.|||||++++..+...|+.++.
T Consensus 172 ~dLw~WyEpyldDdeeidpkaggG--~vmTiGqmvr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~r 238 (453)
T KOG2888|consen 172 ADLWDWYEPYLDDDEEIDPKAGGG--DVMTIGQMVRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERKR 238 (453)
T ss_pred hHHHHHhhhhccchhhcCCcCCCC--ceeeHHHHHHHHHhhhhHHhccCCCCCchHHHHHHHHHHhccc
Confidence 999999999999999999987655 6999999999999999999999999999999998888776654
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.14 E-value=0.0006 Score=69.21 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.9
Q ss_pred CChhHHHHH
Q 019667 316 PDPEIAEAN 324 (337)
Q Consensus 316 ~d~~~~~~~ 324 (337)
.++.-++++
T Consensus 124 ~~~~~~~~~ 132 (509)
T TIGR01642 124 VTADQAKAS 132 (509)
T ss_pred cchHHHhhc
Confidence 344444444
No 5
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.82 E-value=0.00057 Score=68.72 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=2.5
Q ss_pred HHHhcC
Q 019667 37 VEFIKN 42 (337)
Q Consensus 37 ~~~L~~ 42 (337)
.++|+|
T Consensus 68 aQhLtn 73 (479)
T KOG4676|consen 68 AQHLTN 73 (479)
T ss_pred Hhhhcc
Confidence 344443
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.78 E-value=0.0013 Score=66.74 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q 019667 318 PEIAEANRIRA 328 (337)
Q Consensus 318 ~~~~~~~~~~~ 328 (337)
..+..++...+
T Consensus 121 ~~~~~~~~~~~ 131 (509)
T TIGR01642 121 YELVTADQAKA 131 (509)
T ss_pred ccccchHHHhh
Confidence 33444444433
No 7
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=0.0017 Score=63.36 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=57.8
Q ss_pred CCCCCCchhHHHHHHhccCCCHHHHH-HHhcCCCcceeeecccchhhhccchHHHHHHhhhhhhhhhhhhhccCCC
Q 019667 12 GNRKPTPFMCLVMKMLQIQPEKDIVV-EFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRQKSGDG 86 (337)
Q Consensus 12 ~~~~Ps~f~CLL~KLlqi~P~~~iv~-~~L~~~d~KYlRaLg~lYlRltg~p~ely~~lEp~l~DyrKlr~~~~dg 86 (337)
.|.+-.||.+||+-.|.++.+..-|. +|..++.+|-|++|-.. +|++|. .|+|++.-..-..+..++.++|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~---vTgksk-GYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK---VTGKSK-GYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec---ccCCcc-ceEEEEeccHHHHHHHHHhccC
Confidence 44556899899999999999998887 78899999999999887 889886 8999986655556666666665
No 8
>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function of the domain is not known.
Probab=96.15 E-value=0.0052 Score=50.65 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=16.4
Q ss_pred CccccchhhhhHHHhhhhhhcc
Q 019667 128 PRKSVLEDDFEEEEEKEENDQL 149 (337)
Q Consensus 128 pR~s~Le~~~Ee~eeeeEee~~ 149 (337)
|++++|+.+|++....+|+.+.
T Consensus 1 p~~s~l~~d~~~~~~~~Ee~~~ 22 (97)
T PF12871_consen 1 PRVSALEEDLDDEESGEEETAR 22 (97)
T ss_pred Cccccccccccccccccccccc
Confidence 6789999999887766655444
No 9
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=95.57 E-value=0.013 Score=53.30 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=10.4
Q ss_pred CCCChhHHHHHHHH
Q 019667 314 DHPDPEIAEANRIR 327 (337)
Q Consensus 314 ~~~d~~~~~~~~~~ 327 (337)
.+..+|++||-+|=
T Consensus 137 eg~eeEeiEMmk~M 150 (196)
T KOG3263|consen 137 EGKEEEEIEMMKIM 150 (196)
T ss_pred cCCCHHHHHHHHHh
Confidence 45688999887763
No 10
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=95.26 E-value=0.014 Score=62.14 Aligned_cols=21 Identities=52% Similarity=0.841 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHhcCCCCCC
Q 019667 316 PDPEIAEANRIRASLGLKPLK 336 (337)
Q Consensus 316 ~d~~~~~~~~~~~~~~~~~~~ 336 (337)
.--.|-|-|+|||+||||||-
T Consensus 51 dslSIeETNklRakLGlkPle 71 (705)
T KOG2217|consen 51 DSLSIEETNKLRAKLGLKPLE 71 (705)
T ss_pred cccchhHhHHHHHhcCCCccc
Confidence 356899999999999999983
No 11
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.61 E-value=0.024 Score=56.41 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=10.4
Q ss_pred eHHHHHHHHHhccccccc
Q 019667 92 HVDEVIDELLTKDYSCDI 109 (337)
Q Consensus 92 ~~defvd~LL~~~~~~~i 109 (337)
++=.|.+..|.++.-+++
T Consensus 173 dLw~WyEpyldDdeeidp 190 (453)
T KOG2888|consen 173 DLWDWYEPYLDDDEEIDP 190 (453)
T ss_pred HHHHHhhhhccchhhcCC
Confidence 344566666766665554
No 12
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=81.49 E-value=1.3 Score=47.27 Aligned_cols=9 Identities=22% Similarity=0.139 Sum_probs=3.6
Q ss_pred HHhcccccc
Q 019667 100 LLTKDYSCD 108 (337)
Q Consensus 100 LL~~~~~~~ 108 (337)
++..--||+
T Consensus 511 ~iPn~py~d 519 (757)
T KOG4368|consen 511 LIPNVPYFD 519 (757)
T ss_pred cCCCCcccc
Confidence 333334444
No 13
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=76.79 E-value=1.3 Score=44.01 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=7.1
Q ss_pred eeeHHHHHHHHHhc
Q 019667 90 LTHVDEVIDELLTK 103 (337)
Q Consensus 90 ~~~~defvd~LL~~ 103 (337)
+..+++.|..||.+
T Consensus 124 v~~l~e~I~~~l~~ 137 (319)
T KOG0796|consen 124 VHELEEKIGKLLEK 137 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 14
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=76.05 E-value=1.5 Score=43.54 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=3.6
Q ss_pred HHhhhhhhh
Q 019667 67 RYLEPLYND 75 (337)
Q Consensus 67 ~~lEp~l~D 75 (337)
.+|+.+++|
T Consensus 86 ~~l~~~v~d 94 (319)
T KOG0796|consen 86 EILERFVAD 94 (319)
T ss_pred HHHHHHHHH
Confidence 333444433
No 15
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=68.88 E-value=5.6 Score=39.47 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=4.8
Q ss_pred HHHHHhccCC
Q 019667 22 LVMKMLQIQP 31 (337)
Q Consensus 22 LL~KLlqi~P 31 (337)
-|++||...|
T Consensus 8 nllaLF~pRp 17 (335)
T KOG0113|consen 8 NLLALFAPRP 17 (335)
T ss_pred cHHHhcCCCC
Confidence 3455555443
No 16
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=59.18 E-value=6.7 Score=42.99 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.7
Q ss_pred HHHHHh
Q 019667 22 LVMKML 27 (337)
Q Consensus 22 LL~KLl 27 (337)
||++-|
T Consensus 470 ci~eSl 475 (877)
T KOG0151|consen 470 CITESL 475 (877)
T ss_pred HHHHHH
Confidence 444433
No 17
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=54.48 E-value=7.7 Score=42.12 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCCcceeeec
Q 019667 33 KDIVVEFIKNDDYKYVRVL 51 (337)
Q Consensus 33 ~~iv~~~L~~~d~KYlRaL 51 (337)
..+..+++.++..++-..+
T Consensus 430 v~~~aE~Vaq~Gl~~e~S~ 448 (878)
T KOG1847|consen 430 VIIRAEDVAQEGLAVEDSK 448 (878)
T ss_pred HHHHHHHHHhhchhhhhhh
Confidence 3444566666555544333
No 18
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=47.57 E-value=26 Score=37.25 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcc
Q 019667 93 VDEVIDELLTKD 104 (337)
Q Consensus 93 ~defvd~LL~~~ 104 (337)
|++.++.+|...
T Consensus 5 ~~~d~Ea~lE~p 16 (549)
T KOG0147|consen 5 LDSDIEAMLEAP 16 (549)
T ss_pred hhhHHHHHhhhh
Confidence 445555555443
No 19
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=46.14 E-value=19 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCCchhHHHHHHhccCCCHHHHHHHhc
Q 019667 14 RKPTPFMCLVMKMLQIQPEKDIVVEFIK 41 (337)
Q Consensus 14 ~~Ps~f~CLL~KLlqi~P~~~iv~~~L~ 41 (337)
+-++-|.|||+..|+-+|+.+.|.+.|.
T Consensus 222 glh~dFacll~~~l~~kp~~~ri~eII~ 249 (344)
T KOG1567|consen 222 GLHCDFACLLFSHLKKKPNEERIEEIIT 249 (344)
T ss_pred CCcccHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4688999999999999999999987775
No 20
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=39.40 E-value=29 Score=28.79 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=28.1
Q ss_pred chHHHHHHhhhhhhhhhhhhhccCCCceeeeeH-----------HHHHHHHHhccccccccC
Q 019667 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHV-----------DEVIDELLTKDYSCDIAL 111 (337)
Q Consensus 61 ~p~ely~~lEp~l~DyrKlr~~~~dg~~~~~~~-----------defvd~LL~~~~~~~i~L 111 (337)
++.+.|.||++.|.- |. .+..|.+++| -+|+..++.++.|+-++|
T Consensus 17 sSkeTyeWL~aal~R--Ky----p~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~ 72 (93)
T PF07315_consen 17 SSKETYEWLEAALKR--KY----PDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV 72 (93)
T ss_dssp -HHHHHHHHHHHHHH--H-----TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE
T ss_pred CchhHHHHHHHHHhC--cC----CCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE
Confidence 347889999987752 32 2223444443 489999999998875543
No 21
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=37.65 E-value=18 Score=36.54 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=5.6
Q ss_pred ccccCCCcc
Q 019667 107 CDIALPRIK 115 (337)
Q Consensus 107 ~~i~LPRip 115 (337)
+.|+||-.|
T Consensus 197 ~eIpLp~~P 205 (367)
T KOG0835|consen 197 LEIPLPFQP 205 (367)
T ss_pred hcCCCCCCc
Confidence 356666666
No 22
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=36.50 E-value=23 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCCCchhHHHHHHhccCCCHHHHH---HHhcC--------CCcceeeecccchh
Q 019667 14 RKPTPFMCLVMKMLQIQPEKDIVV---EFIKN--------DDYKYVRVLGAFYL 56 (337)
Q Consensus 14 ~~Ps~f~CLL~KLlqi~P~~~iv~---~~L~~--------~d~KYlRaLg~lYl 56 (337)
.-|.-+|--.+.-||+-|..++++ .|++. -..+.+.|+|.+||
T Consensus 139 ~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyL 192 (367)
T KOG0835|consen 139 EHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYL 192 (367)
T ss_pred eccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHH
Confidence 456666677777788888876655 33331 23345566666665
No 23
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=35.46 E-value=18 Score=40.53 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=11.2
Q ss_pred ccCCCcccchhHhHhccC
Q 019667 109 IALPRIKKRWNLETVGAL 126 (337)
Q Consensus 109 i~LPRip~R~~lE~~~~L 126 (337)
+-+|-+|.+|.-.....|
T Consensus 190 ~Ynpsmpfkwnaqriq~l 207 (1194)
T KOG4246|consen 190 DYNPSMPFKWNAQRIQHL 207 (1194)
T ss_pred ccCCCCCccccHHHHHhc
Confidence 446777777776655443
No 24
>PF06762 LMF1: Lipase maturation factor; InterPro: IPR009613 This family, which includes bacterial and eukaryotic members, represents a conserved region located towards the C-terminal end of a number of hypothetical proteins of unknown function. These are possibly integral membrane proteins.
Probab=35.09 E-value=46 Score=33.88 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=30.1
Q ss_pred CCchhH-HHHHHhccCCCHHHHHHHhcCCCc------ceeeecccchhhhcc
Q 019667 16 PTPFMC-LVMKMLQIQPEKDIVVEFIKNDDY------KYVRVLGAFYLRLTG 60 (337)
Q Consensus 16 Ps~f~C-LL~KLlqi~P~~~iv~~~L~~~d~------KYlRaLg~lYlRltg 60 (337)
-.++|| |++||||=+| .|..+|.++.| +||||.-..| ++|.
T Consensus 312 ~~pWf~~ll~rLL~n~~---~Vl~LL~~nPF~~~~pP~~iRa~lY~Y-~Ft~ 359 (384)
T PF06762_consen 312 QNPWFLSLLYRLLQNDP---EVLSLLDHNPFQPDKPPKYIRASLYRY-RFTK 359 (384)
T ss_pred CCchHHHHHHHHHcCCH---HHHHHhccCCCCCCCCCcEEEeEEEEE-ecCC
Confidence 456666 8899999764 47788888888 8999985554 4443
No 25
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=34.74 E-value=19 Score=40.29 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=4.5
Q ss_pred HHhccCCCHHH
Q 019667 25 KMLQIQPEKDI 35 (337)
Q Consensus 25 KLlqi~P~~~i 35 (337)
||-..+|+..|
T Consensus 117 ~ls~~qP~~q~ 127 (1194)
T KOG4246|consen 117 KLSGYQPVDQR 127 (1194)
T ss_pred cccCCCchhhh
Confidence 33344444443
No 26
>PF07280 DUF1443: Protein of unknown function (DUF1443); InterPro: IPR009903 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf110; it is a family of uncharacterised viral proteins.
Probab=34.40 E-value=21 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=25.3
Q ss_pred chhHHHHHHhccCCCHHHHHHHhcCCCccee
Q 019667 18 PFMCLVMKMLQIQPEKDIVVEFIKNDDYKYV 48 (337)
Q Consensus 18 ~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYl 48 (337)
-|+||++=|+.+..+..|+..+|=+ .+|||
T Consensus 6 ifv~~~~~l~~L~lN~~q~~~~L~Y-QykyI 35 (43)
T PF07280_consen 6 IFVVCVYVLYILKLNRGQERRLLYY-QYKYI 35 (43)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-Hhccc
Confidence 4889999999999999999988854 66776
No 27
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=29.55 E-value=34 Score=37.41 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 019667 321 AEANRIRAS 329 (337)
Q Consensus 321 ~~~~~~~~~ 329 (337)
+--.+|+|+
T Consensus 856 qvs~~~~~~ 864 (878)
T KOG1847|consen 856 QVSDELRAK 864 (878)
T ss_pred hhHHHHHHH
Confidence 334444444
No 28
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.89 E-value=47 Score=33.03 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHhcc--CCCHHHHHHHhcCCCcceeeecccchhhh
Q 019667 24 MKMLQI--QPEKDIVVEFIKNDDYKYVRVLGAFYLRL 58 (337)
Q Consensus 24 ~KLlqi--~P~~~iv~~~L~~~d~KYlRaLg~lYlRl 58 (337)
+|+||+ .+..-.|++++.....+++++-+.|||=|
T Consensus 67 ikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf 103 (376)
T KOG0669|consen 67 IKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVF 103 (376)
T ss_pred HHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeH
Confidence 367777 67777788889889999999888888743
No 29
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.91 E-value=62 Score=27.96 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCcceeeecccchhhhccchHHHHHHhh
Q 019667 43 DDYKYVRVLGAFYLRLTGTDIDIYRYLE 70 (337)
Q Consensus 43 ~d~KYlRaLg~lYlRltg~p~ely~~lE 70 (337)
+|-.||+ |-+.|+.++..|.++|++|.
T Consensus 64 nD~RyLk-iWi~ya~~~~dp~~if~~L~ 90 (125)
T smart00777 64 NDPRYLK-IWLKYADNCDEPRELFQFLY 90 (125)
T ss_pred CCHHHHH-HHHHHHHhcCCHHHHHHHHH
Confidence 6777876 45689999999999999996
No 30
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=27.51 E-value=89 Score=33.95 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=4.8
Q ss_pred HHHHHHHHHhcc
Q 019667 93 VDEVIDELLTKD 104 (337)
Q Consensus 93 ~defvd~LL~~~ 104 (337)
.+++-..+++..
T Consensus 48 ~~k~K~~~k~h~ 59 (752)
T KOG0670|consen 48 EKKDKKHKKHHD 59 (752)
T ss_pred hhhhhhcccccc
Confidence 344444444333
No 31
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=27.02 E-value=44 Score=30.28 Aligned_cols=6 Identities=67% Similarity=1.315 Sum_probs=3.6
Q ss_pred ccCCcc
Q 019667 5 HLGGTF 10 (337)
Q Consensus 5 ~iGg~~ 10 (337)
-|||||
T Consensus 9 avGGTF 14 (158)
T COG1019 9 AVGGTF 14 (158)
T ss_pred Eecccc
Confidence 456666
No 32
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=53 Score=27.61 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=29.0
Q ss_pred chHHHHHHhhhhhhhhhhhhhccCCCceeeeeH-----------HHHHHHHHhcccccccc
Q 019667 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHV-----------DEVIDELLTKDYSCDIA 110 (337)
Q Consensus 61 ~p~ely~~lEp~l~DyrKlr~~~~dg~~~~~~~-----------defvd~LL~~~~~~~i~ 110 (337)
++.+.|.||++.+.- +-.+..|..++| -+|++.++.++.|+-++
T Consensus 24 tsKdt~eWLeaalkR------Kyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPli 78 (106)
T COG4837 24 TSKDTYEWLEAALKR------KYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLI 78 (106)
T ss_pred cchhHHHHHHHHHhc------cCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEE
Confidence 447899999987642 223334554444 46888888888876544
No 33
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=26.30 E-value=29 Score=37.00 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=7.5
Q ss_pred eeeeHHHHHHHHHhccccc
Q 019667 89 ILTHVDEVIDELLTKDYSC 107 (337)
Q Consensus 89 ~~~~~defvd~LL~~~~~~ 107 (337)
.-|.-+.|+..|.....||
T Consensus 124 ~~vSE~~~L~qiy~~e~~g 142 (653)
T KOG2548|consen 124 KKVSEKHYLKQIYDHERRG 142 (653)
T ss_pred hcccHHHHHHHHHHHHHhc
Confidence 3333344444444433333
No 34
>KOG2226 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=26.18 E-value=1.3e+02 Score=33.30 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=61.3
Q ss_pred CCCCCCchhHHHHHHhccCCCHHHHHH----HhcC---CCcceeeecccc-----------hhhhccch---------HH
Q 019667 12 GNRKPTPFMCLVMKMLQIQPEKDIVVE----FIKN---DDYKYVRVLGAF-----------YLRLTGTD---------ID 64 (337)
Q Consensus 12 ~~~~Ps~f~CLL~KLlqi~P~~~iv~~----~L~~---~d~KYlRaLg~l-----------YlRltg~p---------~e 64 (337)
.++.+-..|-++++-||..-+..+|.. +|.+ ..+-||...+.+ .+=++..+ .+
T Consensus 299 ~g~~~kN~f~~ylSrlhr~~DF~fil~gi~RLL~nPl~s~s~yi~~s~k~~~~~~E~Liflw~~i~yNkrF~~~li~t~~ 378 (786)
T KOG2226|consen 299 EGQHIKNYFINYLSRLHRTEDFLFILKGITRLLSNPLKSESQYIPNSTKRKRCHPELLIFLWLLITYNKRFTDYLIKTSD 378 (786)
T ss_pred CccchhhHHHHHHHHhccchhHHHHHHHHHHHhcchhhcccccccccchhhhhhHHHHHHHHHHHhccHHHHHHHhcCcc
Confidence 445677788889999999988888863 3333 344455544432 11111111 11
Q ss_pred HHHHhhhhhhhhhhhhhccCCCceeeeeHHHHHHHHHhccccccccCCC
Q 019667 65 IYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPR 113 (337)
Q Consensus 65 ly~~lEp~l~DyrKlr~~~~dg~~~~~~~defvd~LL~~~~~~~i~LPR 113 (337)
+-.+|-|++ |--+++++..+.+.++||..||--+|+.+++|+..|.+
T Consensus 379 a~d~li~iL--y~~~~yr~D~~~~gl~~l~vfil~~Ls~Ek~f~~rLNk 425 (786)
T KOG2226|consen 379 ALDILIPIL--YHHVKYRGDTERSGLSHLCVFILLLLSGEKNFCKRLNK 425 (786)
T ss_pred HHHHHHHHH--HHHHHhcCCccccchHHHHHHHHHHHhhhHHHHHHhcc
Confidence 111111111 22334455567789999999999999999999988877
No 35
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=24.40 E-value=46 Score=29.12 Aligned_cols=7 Identities=57% Similarity=1.132 Sum_probs=4.9
Q ss_pred ccCCccC
Q 019667 5 HLGGTFG 11 (337)
Q Consensus 5 ~iGg~~g 11 (337)
.+||+|.
T Consensus 3 ~~GGtFD 9 (143)
T cd02164 3 AVGGTFD 9 (143)
T ss_pred EEcccCC
Confidence 4688884
No 36
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=24.25 E-value=51 Score=32.94 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=7.8
Q ss_pred eecccchhhhccchHHHH
Q 019667 49 RVLGAFYLRLTGTDIDIY 66 (337)
Q Consensus 49 RaLg~lYlRltg~p~ely 66 (337)
-+||+.-.=+++.|.-+|
T Consensus 110 P~LgLYS~vMtWtPipC~ 127 (377)
T PF07420_consen 110 PILGLYSSVMTWTPIPCF 127 (377)
T ss_pred hhhhhhhhheecccccee
Confidence 344433334455554444
No 37
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=21.91 E-value=53 Score=33.55 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.8
Q ss_pred CCCCchhHHHHHHhccCCCHHHHH
Q 019667 14 RKPTPFMCLVMKMLQIQPEKDIVV 37 (337)
Q Consensus 14 ~~Ps~f~CLL~KLlqi~P~~~iv~ 37 (337)
..|+ ++-||+|||++.|.+.|-.
T Consensus 309 k~~~-a~~LL~klL~yDP~kRIta 331 (438)
T KOG0666|consen 309 KDPS-ALDLLQKLLTYDPIKRITA 331 (438)
T ss_pred CCch-HHHHHHHHhccCchhhccH
Confidence 3445 9999999999999988744
Done!