Query 019667
Match_columns 337
No_of_seqs 264 out of 393
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 97.9 8E-06 2.7E-10 81.3 4.9 13 60-72 114-126 (437)
2 3pgw_S U1-70K; protein-RNA com 97.7 2.3E-05 7.8E-10 78.0 4.9 14 66-79 116-129 (437)
3 3plv_C 66 kDa U4/U6.U5 small n 97.3 0.0001 3.4E-09 44.2 2.3 19 319-337 3-21 (21)
4 3u21_A Nuclear factor related 29.3 19 0.00064 30.3 1.3 32 11-42 3-36 (127)
5 2kxe_A DNA polymerase II small 28.0 14 0.00048 28.0 0.3 16 91-106 2-17 (75)
6 1xg8_A Hypothetical protein SA 19.9 72 0.0025 26.1 3.0 45 61-111 27-84 (111)
7 4h0a_A Uncharacterized protein 16.5 55 0.0019 31.0 1.8 13 323-335 213-225 (323)
8 3twe_A Alpha4H; unknown functi 15.3 80 0.0028 19.2 1.7 23 60-82 1-23 (27)
9 2lqt_A Coiled-coil-helix-coile 12.8 96 0.0033 24.3 2.0 30 305-334 55-84 (85)
10 4aez_C MAD3, mitotic spindle c 11.5 60 0.0021 29.5 0.5 62 3-70 79-141 (223)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.89 E-value=8e-06 Score=81.34 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=8.4
Q ss_pred cchHHHHHHhhhh
Q 019667 60 GTDIDIYRYLEPL 72 (337)
Q Consensus 60 g~p~ely~~lEp~ 72 (337)
.+..+|..+|.+|
T Consensus 114 ~te~~L~~~F~~~ 126 (437)
T 3pgw_S 114 TTESKLRREFEVY 126 (437)
T ss_pred CCHHHHHHHHHHc
Confidence 3456677777764
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.71 E-value=2.3e-05 Score=78.02 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=8.6
Q ss_pred HHHhhhhhhhhhhh
Q 019667 66 YRYLEPLYNDYRKL 79 (337)
Q Consensus 66 y~~lEp~l~DyrKl 79 (337)
...|..++..|-.|
T Consensus 116 e~~L~~~F~~~G~I 129 (437)
T 3pgw_S 116 ESKLRREFEVYGPI 129 (437)
T ss_pred HHHHHHHHHHcCCe
Confidence 55666666666544
No 3
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0001 Score=44.19 Aligned_cols=19 Identities=53% Similarity=0.704 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCCCCCC.....
Q 019667 319 EIAEANRIRASLGLKPLKL..... 337 (337)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~..... 337 (337)
.|.|+|+||++|||||+-+
T Consensus 3 siEEtnk~r~~lGLkplp~..... 21 (21)
T 3plv_C 3 SIEETNELRASLGLKLIPPxxxxx 26 (26)
T ss_dssp CHHHHHHHHHHTTCCCCCC.....
T ss_pred cHHHHHHHHHHcCCCCCCC.....
Confidence 5889999999999999864
No 4
>3u21_A Nuclear factor related to kappa-B-binding protein; DNA/RNA-binding 3-helical bundle, winged-HTH domain, structu genomics; HET: MSE MLY; 2.18A {Homo sapiens}
Probab=29.34 E-value=19 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCCCCCCchhHHHHHHhccC--CCHHHHHHHhcC
Q 019667 11 GGNRKPTPFMCLVMKMLQIQ--PEKDIVVEFIKN 42 (337)
Q Consensus 11 g~~~~Ps~f~CLL~KLlqi~--P~~~iv~~~L~~ 42 (337)
|-+-.|+.|||||.-+|..+ .+...|.+.+..
T Consensus 3 ~~~e~~~sFFsLLrdif~s~~r~s~~~Le~~v~~ 36 (127)
T 3u21_A 3 GINEISSSFFSLLLEILLLESQASLPMLEERVLD 36 (127)
T ss_dssp -CCSCCSCHHHHHHHHHHTTSEEEHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 45678999999999988665 566777777764
No 5
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=27.95 E-value=14 Score=27.99 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=12.7
Q ss_pred eeHHHHHHHHHhcccc
Q 019667 91 THVDEVIDELLTKDYS 106 (337)
Q Consensus 91 ~~~defvd~LL~~~~~ 106 (337)
.|||+||.+|+...+.
T Consensus 2 ~~MdelVk~L~~n~YL 17 (75)
T 2kxe_A 2 SHMDEFVKGLMKNGYL 17 (75)
T ss_dssp --CCHHHHHHHTTTCE
T ss_pred ccHHHHHHHHHHCCce
Confidence 4899999999998865
No 6
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=19.89 E-value=72 Score=26.11 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=28.6
Q ss_pred chHHHHHHhhhhhhhhhhhhhccCCCceeee-------------eHHHHHHHHHhccccccccC
Q 019667 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILT-------------HVDEVIDELLTKDYSCDIAL 111 (337)
Q Consensus 61 ~p~ely~~lEp~l~DyrKlr~~~~dg~~~~~-------------~~defvd~LL~~~~~~~i~L 111 (337)
++.+-|.||++.|.- |. .+..|.++ |--+|+..++.++.|+-+++
T Consensus 27 SSkeTyEWLqAal~R--Ky----p~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~ 84 (111)
T 1xg8_A 27 TSKDIYDWLQPLLKR--KY----PNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLIT 84 (111)
T ss_dssp CHHHHHHHHHHHHHH--HC----TTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEE
T ss_pred CchhHHHHHHHHHhC--cC----CCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEE
Confidence 447889999988752 32 12222222 23479999999998875443
No 7
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=16.46 E-value=55 Score=30.95 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=7.0
Q ss_pred HHHHHHhcCCCCC
Q 019667 323 ANRIRASLGLKPL 335 (337)
Q Consensus 323 ~~~~~~~~~~~~~ 335 (337)
+|++||+.||.||
T Consensus 213 iN~~R~~~GL~pL 225 (323)
T 4h0a_A 213 TNEMRKLKGLKPL 225 (323)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHcCCccc
Confidence 4555555555555
No 8
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=15.27 E-value=80 Score=19.24 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=18.4
Q ss_pred cchHHHHHHhhhhhhhhhhhhhc
Q 019667 60 GTDIDIYRYLEPLYNDYRKLRQK 82 (337)
Q Consensus 60 g~p~ely~~lEp~l~DyrKlr~~ 82 (337)
|.+.++|+-||.+-.-.+||+-+
T Consensus 1 gnadelykeledlqerlrklrkk 23 (27)
T 3twe_A 1 GNADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999998888888754
No 9
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=12.83 E-value=96 Score=24.30 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.8
Q ss_pred hhcccCCCCCCCChhHHHHHHHHHhcCCCC
Q 019667 305 KKEKKDDGTDHPDPEIAEANRIRASLGLKP 334 (337)
Q Consensus 305 ~k~kk~~~~~~~d~~~~~~~~~~~~~~~~~ 334 (337)
.++.+.+|-....|.++|-.+|.++||-+|
T Consensus 55 ~~eRRr~Gi~P~~P~~~eR~~I~~~~~~~p 84 (85)
T 2lqt_A 55 VMQRRKNGVKPFMPTAAERDEILRAVGNMP 84 (85)
T ss_dssp HHHHHTTCCSCSSCCHHHHHHHHHHHTSCC
T ss_pred HHHHHHCCCCCCCcCHHHHHHHHHHhccCC
Confidence 455566677778999999999999999777
No 10
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=11.52 E-value=60 Score=29.50 Aligned_cols=62 Identities=16% Similarity=0.376 Sum_probs=0.0
Q ss_pred ccccCCcc-CCCCCCCchhHHHHHHhccCCCHHHHHHHhcCCCcceeeecccchhhhccchHHHHHHhh
Q 019667 3 LDHLGGTF-GGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLE 70 (337)
Q Consensus 3 l~~iGg~~-g~~~~Ps~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p~ely~~lE 70 (337)
|+.|.-.| .|..+-|-.+.||-+.++.=-+.+. =.+|-.||+ |.+.|+.++..|.+||.||.
T Consensus 79 IkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~r-----YknD~RyLk-lWl~Ya~~~~~p~~if~~L~ 141 (223)
T 4aez_C 79 IKWTLDNFPQGETKTSGLVTLLERCTREFVRNPL-----YKDDVRYLR-IWMQYVNYIDEPVELFSFLA 141 (223)
T ss_dssp HHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGG-----GTTCHHHHH-HHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhCcCCCcchhhHHHHHHHHHHHhccccc-----ccCCHHHHH-HHHHHHHccCCHHHHHHHHH
Done!