Query 019667
Match_columns 337
No_of_seqs 264 out of 393
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xg8a_ c.47.1.17 (A:) Hypothe 26.2 21 0.0016 27.3 3.0 45 61-111 27-84 (111)
2 d2zkmx1 a.39.1.7 (X:142-311) P 21.2 10 0.00076 29.9 0.3 17 89-105 143-159 (170)
3 d2qswa1 d.58.18.13 (A:256-345) 14.2 22 0.0016 25.5 0.5 57 2-70 17-75 (90)
4 d1w7jb1 a.39.1.5 (B:11-149) My 13.6 1.6E+02 0.012 20.7 5.6 27 15-42 18-44 (139)
5 d1ggwa_ a.39.1.5 (A:) Cdc4p {F 12.7 1.5E+02 0.011 21.3 5.3 26 17-42 24-49 (140)
6 d1r8ja1 a.186.1.1 (A:177-282) 12.3 50 0.0036 24.9 2.1 53 61-116 7-59 (106)
7 d2fcta1 b.82.2.9 (A:3-310) Syr 10.9 85 0.0062 25.8 3.6 34 28-70 2-35 (308)
8 d1oyza_ a.118.1.16 (A:) Hypoth 9.1 69 0.0051 24.7 2.1 35 27-62 15-49 (276)
9 d1weza_ d.58.7.1 (A:) Heteroge 9.0 30 0.0022 24.6 -0.2 33 11-43 7-39 (102)
10 d1puee_ a.4.5.21 (E:) Transcri 8.4 70 0.0051 23.2 1.7 21 91-111 2-22 (88)
No 1
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=26.20 E-value=21 Score=27.30 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=29.4
Q ss_pred chHHHHHHhhhhhhhhhhhhhccCCCceeee-------------eHHHHHHHHHhccccccccC
Q 019667 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILT-------------HVDEVIDELLTKDYSCDIAL 111 (337)
Q Consensus 61 ~p~ely~~lEp~l~DyrKlr~~~~dg~~~~~-------------~~defvd~LL~~~~~~~i~L 111 (337)
++.+.|.||++.|. ||.. +..|.++ |-.+|+..++.++.|+-++|
T Consensus 27 SSkeTyEWLqaal~--RKyp----~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~ 84 (111)
T d1xg8a_ 27 TSKDIYDWLQPLLK--RKYP----NISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLIT 84 (111)
T ss_dssp CHHHHHHHHHHHHH--HHCT----TSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEE
T ss_pred CchhHHHHHHHHHh--CcCC----CCceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEE
Confidence 34788999998875 2332 2233333 33369999999998875544
No 2
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.18 E-value=10 Score=29.86 Aligned_cols=17 Identities=6% Similarity=-0.189 Sum_probs=13.7
Q ss_pred eeeeHHHHHHHHHhccc
Q 019667 89 ILTHVDEVIDELLTKDY 105 (337)
Q Consensus 89 ~~~~~defvd~LL~~~~ 105 (337)
..+++++|+.-|+.++.
T Consensus 143 ~~ls~d~F~~fL~S~en 159 (170)
T d2zkmx1 143 GQLSPEGMVWFLCGPEN 159 (170)
T ss_dssp --CCHHHHHHHHHSTTS
T ss_pred CeECHHHHHHHHcCccC
Confidence 47999999999999874
No 3
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=14.16 E-value=22 Score=25.53 Aligned_cols=57 Identities=19% Similarity=0.398 Sum_probs=38.1
Q ss_pred cccccCCccCCCCCCCchhHHHHHHhccCCCHHHHHHHhcCCCccee--eecccchhhhccchHHHHHHhh
Q 019667 2 ELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYV--RVLGAFYLRLTGTDIDIYRYLE 70 (337)
Q Consensus 2 ~l~~iGg~~g~~~~Ps~f~CLL~KLlqi~P~~~iv~~~L~~~d~KYl--RaLg~lYlRltg~p~ely~~lE 70 (337)
.|.|.|.. .-.|.++-|.|-|.+.++ | =++...+| .++|.|++.++|.+..+-+.+.
T Consensus 17 rl~f~g~~-----a~~Pvis~l~r~~~i~vn--I-----L~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~ 75 (90)
T d2qswa1 17 RLLFHGEQ-----AKLPIISHIVQEYQVEVS--I-----IQGNIQQTKQGAVGSLYIQLLGEEQNILAAIE 75 (90)
T ss_dssp EEEEESCS-----CSSCHHHHHHHHHTCEEE--E-----EEEEEEEETTEEEEEEEEEEESCHHHHHHHHH
T ss_pred EEEEcCCc-----cCccHHHHHHHHhCCcEE--E-----EEEEeEEeCCccEEEEEEEEECCHHHHHHHHH
Confidence 35555544 346888888888877643 1 13444555 5789999999999976655444
No 4
>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.55 E-value=1.6e+02 Score=20.74 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred CCCchhHHHHHHhccCCCHHHHHHHhcC
Q 019667 15 KPTPFMCLVMKMLQIQPEKDIVVEFIKN 42 (337)
Q Consensus 15 ~Ps~f~CLL~KLlqi~P~~~iv~~~L~~ 42 (337)
.++. ++-+|+.|-+.|+..+|..++..
T Consensus 18 ~~~e-l~~~l~~lg~~~t~~e~~~~~~~ 44 (139)
T d1w7jb1 18 LYSQ-CGDVMRALGQNPTNAEVLKVLGN 44 (139)
T ss_dssp ESTT-HHHHHHHTTCCCCHHHHHHHTTC
T ss_pred CHHH-HHHHHHHhccCCCHHHHHHHHHH
Confidence 3444 45566778899999999988865
No 5
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=12.68 E-value=1.5e+02 Score=21.30 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=20.7
Q ss_pred CchhHHHHHHhccCCCHHHHHHHhcC
Q 019667 17 TPFMCLVMKMLQIQPEKDIVVEFIKN 42 (337)
Q Consensus 17 s~f~CLL~KLlqi~P~~~iv~~~L~~ 42 (337)
..=|+.+++.|-+.|+...|..+..+
T Consensus 24 ~~el~~~l~~lg~~~t~~ei~~~~~~ 49 (140)
T d1ggwa_ 24 KTSIGDLLRACGQNPTLAEITEIEST 49 (140)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhcc
Confidence 34456777888999999999988765
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=12.28 E-value=50 Score=24.90 Aligned_cols=53 Identities=9% Similarity=0.270 Sum_probs=37.0
Q ss_pred chHHHHHHhhhhhhhhhhhhhccCCCceeeeeHHHHHHHHHhccccccccCCCccc
Q 019667 61 TDIDIYRYLEPLYNDYRKLRQKSGDGRFILTHVDEVIDELLTKDYSCDIALPRIKK 116 (337)
Q Consensus 61 ~p~ely~~lEp~l~DyrKlr~~~~dg~~~~~~~defvd~LL~~~~~~~i~LPRip~ 116 (337)
+|.+--.+++.+-.+|+.|-..--.. -.++-+-|+++.+.-.|.||+.|+|-.
T Consensus 7 ~p~ErqeLL~~Lk~~YR~IlLsYF~~---d~~~nq~id~fVn~aFfadi~v~~ivE 59 (106)
T d1r8ja1 7 PAYESQKLHQAMQTSYREIVLSYFSP---NSNLNQSIDNFVNMAFFADVPVTKVVE 59 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTST---TCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 67778889999999999985442221 235667777777777787777666543
No 7
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=10.89 E-value=85 Score=25.76 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=22.7
Q ss_pred ccCCCHHHHHHHhcCCCcceeeecccchhhhccchHHHHHHhh
Q 019667 28 QIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTDIDIYRYLE 70 (337)
Q Consensus 28 qi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p~ely~~lE 70 (337)
++.+|.+|+..|-+++ ||.+..+| ++.+|-.++.
T Consensus 2 ~~~Lt~eq~~~f~~~G---yl~i~~~~------s~~ei~~i~~ 35 (308)
T d2fcta1 2 KFALTAEQRASFEKNG---FIGPFDAY------SPEEMKETWK 35 (308)
T ss_dssp TTCCCHHHHHHHHHHS---EEEEEESS------CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC---EEECcCcc------CHHHHHHHHH
Confidence 4678999999998874 55555444 6666644443
No 8
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=9.08 E-value=69 Score=24.72 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=20.1
Q ss_pred hccCCCHHHHHHHhcCCCcceeeecccchhhhccch
Q 019667 27 LQIQPEKDIVVEFIKNDDYKYVRVLGAFYLRLTGTD 62 (337)
Q Consensus 27 lqi~P~~~iv~~~L~~~d~KYlRaLg~lYlRltg~p 62 (337)
..-+...++|..+|+ ..++.||..++.+|-..+++
T Consensus 15 ~~~~~~~~~L~~~L~-d~~~~vR~~A~~~L~~~~~~ 49 (276)
T d1oyza_ 15 QCKKLNDDELFRLLD-DHNSLKRISSARVLQLRGGQ 49 (276)
T ss_dssp HHHTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCCH
T ss_pred ccccCCHHHHHHHhc-CCCHHHHHHHHHHHHhhCCH
Confidence 333455556666665 35566666666666555554
No 9
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=30 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCCCCCCchhHHHHHHhccCCCHHHHHHHhcCC
Q 019667 11 GGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKND 43 (337)
Q Consensus 11 g~~~~Ps~f~CLL~KLlqi~P~~~iv~~~L~~~ 43 (337)
|....+++-.||.++-|-...|++.|..|....
T Consensus 7 ~~~~~~~~~~~v~v~nLp~~~te~dl~~~F~~~ 39 (102)
T d1weza_ 7 GSSFQSTTGHCVHMRGLPYRATENDIYNFFSPL 39 (102)
T ss_dssp CSSCCCSSSCEEEEESCCTTCCHHHHHHSSCSC
T ss_pred CCCCcCCCCCEEEEeCCCCcCCHHHHHHHHhcc
Confidence 445677788899999999999999999988753
No 10
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.39 E-value=70 Score=23.25 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=16.6
Q ss_pred eeHHHHHHHHHhccccccccC
Q 019667 91 THVDEVIDELLTKDYSCDIAL 111 (337)
Q Consensus 91 ~~~defvd~LL~~~~~~~i~L 111 (337)
|++=+|+-.||+++.++++|-
T Consensus 2 i~LwqFL~~LL~d~~~~~~I~ 22 (88)
T d1puee_ 2 IRLYQFLLDLLRSGDMKDSIW 22 (88)
T ss_dssp CCHHHHHHHHHHHTCCTTTEE
T ss_pred ccHHHHHHHHHcCccCCCceE
Confidence 567789999999988876653
Done!