Citrus Sinensis ID: 019668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccccHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHcccccccccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvfssvpvyldppnwqqqqpthhqpqgggggidgsqlplppmlpmgsgggstgairpnsmTERArmakmpqpetalkcprcestntkfcyfnnyslsqprhfcKTCRrywtrggalrnvpvgggcrrnkrskgrnsrskspavtegqatagtssssalssrniigrmqnpqqqipmlpnlhhlndynssdiglnfggiqipsqgvacngndigfqvangtsnsgsilSSGLVEQWklqqfpflsngleqvtglypfdteimepqsytigqlrsksaaLDSEATQFANvkmedntqslnlsrnflginsandhqywgtnnnawsdlsgftssstshll
Flexible Loop (DISEMBL)
MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYfnnyslsqprhFCKTCRRYWtrggalrnvpvgggcrrnkrskgrnsrskspavtegqatagtssssaLSSRNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL
Low Complexity Region (SEG)
MVFSSVPVYLDPPNWqqqqpthhqpqgggggIDGSQlplppmlpmgsgggsTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVgggcrrnkrskgrnsrsksPAVTEGQATAGTssssalssRNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWsdlsgftssstshll
Disordered region (IsUnstruct)
*****************************************************************************CPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGG*****************************************************PNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTI******************************LSRNFLGINSANDHQYWGTNNNAWS**************
Disordered Region (DISOPRED)
*VFSSVPVYLD********************************************************************RCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN**********************************************************************************************************************LQQFPFLS*********************************************************************YWGTNNNAWSD*************
Disordered Region (DISEMBL)
MVFSSVPVYLDPPN****************GIDGSQLPLPPMLPMGSGGGSTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGG**********************************SSRNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSG**********
Disordered Region (DISPRO)
***SSVPVY*D**NWQ****************************************************MPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGC****************************************RMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIM*************************NVK****TQSLNLSRNFLGINSANDHQYWGTNNNAWSDL************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q9M2U1	323	Dof zinc finger protein D	no	no	0.863	0.900	0.459	1e-57
O80928	330	Dof zinc finger protein D	no	no	0.857	0.875	0.355	3e-43
Q9ZV33	340	Dof zinc finger protein D	no	no	0.857	0.85	0.397	4e-42
Q9LZ56	399	Dof zinc finger protein D	no	no	0.851	0.719	0.346	2e-39
Q8L9V6	331	Dof zinc finger protein D	no	no	0.724	0.737	0.388	3e-34
Q84TE9	257	Dof zinc finger protein D	no	no	0.252	0.330	0.633	2e-28
Q9LSL6	316	Dof zinc finger protein D	no	no	0.231	0.246	0.679	3e-27
Q8LDR0	307	Dof zinc finger protein D	no	no	0.237	0.260	0.662	7e-27
O24463	328	Dof zinc finger protein P	N/A	no	0.183	0.189	0.758	5e-26
O82155	194	Dof zinc finger protein D	no	no	0.486	0.845	0.382	7e-26

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 168/366 (45%), Positives = 200/366 (54%), Gaps = 75/366 (20%)

Query: 1   MVFSSVPV-YLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNS 59
           MVFSS+PV   D  NWQQQ   H            + L      P     GS+ A R NS
Sbjct: 1   MVFSSLPVNQFDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVAGSSQA-RVNS 59

Query: 60  MTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 119
           M ERAR+AK+P PE AL CPRC+STNTKFCYFNNYSL+QPRHFCKTCRRYWTRGG+LRNV
Sbjct: 60  MVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNV 119

Query: 120 PVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTS------SSSALSSRNIIGRMQNPQQQ 173
           PVGGG RRNKRSK   SRSKS  V     T  TS      S S  S  +  G++      
Sbjct: 120 PVGGGFRRNKRSK---SRSKSTVVVSTDNTTSTSSLTSRPSYSNPSKFHSYGQIPEFNSN 176

Query: 174 IPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVE 233
           +P+LP L  L DYNSS+ GL+FGG QI +             + +G S+SG     G+++
Sbjct: 177 LPILPPLQSLGDYNSSNTGLDFGGTQISN-------------MISGMSSSG-----GILD 218

Query: 234 QWKL------QQFPFLSN--GLEQVT-GLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQ 284
            W++      QQFPFL N  GL Q +  LYP    ++E                   ATQ
Sbjct: 219 AWRIPPSQQAQQFPFLINTTGLVQSSNALYP----LLEG---------------GVSATQ 259

Query: 285 FANVKMEDNTQSL--------NLSRNFLG---INSANDHQY--WGTNNNAWSDLSGFTS- 330
             NVK E+N Q          NLSRNFLG   INS  + +Y  WG N    S  +GFTS 
Sbjct: 260 TRNVKAEENDQDRGRDGDGVNNLSRNFLGNININSGRNEEYTSWGGN----SSWTGFTSN 315

Query: 331 SSTSHL 336
           +ST HL
Sbjct: 316 NSTGHL 321

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Arabidopsis thaliana (taxid: 3702)

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 82/371 (22%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQL-------------PLPPMLPMGS 47
           MVFSS+  YLD  NWQQ  P+++   G G   +G  +                P    G 
Sbjct: 1   MVFSSIQAYLDSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGG 60

Query: 48  GGGSTGAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCR 107
           GGG  G+IR  SM +RAR A +  PE ALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCR
Sbjct: 61  GGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCR 120

Query: 108 RYWTRGGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSS------- 160
           RYWTRGGALRNVPVGGGCRRN+R+K  ++ + +   T    +  + ++S +S+       
Sbjct: 121 RYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTILSSHYG 180

Query: 161 ---RNIIGRMQNPQQQIPMLPNLHHLNDYNSSDIG------LNFGGIQIPSQGVACNGND 211
               +I+ ++ +P +   M P  +HL D  S+         LN+GG+    + +      
Sbjct: 181 GNQESILSQILSPARL--MNPTYNHLGDLTSNTKTDNNMSLLNYGGLSQDLRSI-----H 233

Query: 212 IGFQVANGTSNSGSILSSGLVEQWK----LQQFPFLSNGLEQ-------VTGLYPFDTEI 260
           +G       ++ GS++S   V++W+     QQ       LE          G Y F++  
Sbjct: 234 MG-------ASGGSLMS--CVDEWRSASYHQQSSMGGGNLEDSSNPNPSANGFYSFESPR 284

Query: 261 MEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNN 320
           +           + ++   + A+QF++VK+EDN         ++ +N          N +
Sbjct: 285 I-----------TSASISSALASQFSSVKVEDNPYK------WVNVNG---------NCS 318

Query: 321 AWSDLSGFTSS 331
           +W+DLS F SS
Sbjct: 319 SWNDLSAFGSS 329

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 169/347 (48%), Gaps = 58/347 (16%)

Query: 1   MVFSSVPVYLDPP-NWQQ-----QQPTHHQPQGGGGGIDGSQLPLPPMLPMGSG------ 48
           MVFSSV  +LDPP NW Q       P HHQ Q  G  + G    L    P          
Sbjct: 1   MVFSSVSSFLDPPINWPQSANPNNHPHHHQLQENGSLVSGHHQVLSHHFPQNPNPNHHHV 60

Query: 49  -GGSTGAIRPNSM----TERARMAKMPQP-ETALKCPRCESTNTKFCYFNNYSLSQPRHF 102
              +   + P+S+     ERAR+AK  QP E ALKCPRC+S NTKFCYFNNY+L+QPRHF
Sbjct: 61  ETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHF 120

Query: 103 CKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRN 162
           CK CRRYWTRGGALRNVPVGGGCRRNK+ K       S + +  Q    TS  +A S  N
Sbjct: 121 CKACRRYWTRGGALRNVPVGGGCRRNKKGK----SGNSKSSSSSQNKQSTSMVNATSPTN 176

Query: 163 IIGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNG----NDIGFQVAN 218
                     Q P LP L +L       IGLN   I   + G         ND+GF    
Sbjct: 177 TSNVQLQTNSQFPFLPTLQNLTQL--GGIGLNLAAINGNNGGNGNTSSSFLNDLGFFHGG 234

Query: 219 GTS-------NSGSILSS-GLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQ 270
            TS       N  ++++S G    + L          ++  GLY F  E+    S +IG 
Sbjct: 235 NTSGPVMGNNNENNLMTSLGSSSHFAL---------FDRTMGLYNFPNEVNMGLS-SIGA 284

Query: 271 LRSKSAALDSEATQFANVKMEDNTQSLNLSRNFLGINSAND--HQYW 315
            R          +Q A VKMEDN    N+SR   G+ S  +  +QYW
Sbjct: 285 TR---------VSQTAQVKMEDNHLG-NISRPVSGLTSPGNQSNQYW 321

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 180/395 (45%), Gaps = 108/395 (27%)

Query: 1   MVFSSVPVYLD-PPNWQQQQPTHHQPQGGGGGIDGSQL-------------PLPPMLPMG 46
           MVFSS P Y D   NWQQQ    HQP     G  G+ +                    + 
Sbjct: 1   MVFSSFPTYPDHSSNWQQQ----HQPITTTVGFTGNNINQQFLPHHPLPPQQQQTPPQLH 56

Query: 47  SGGGSTGA---------IRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLS 97
              G+ G          IRP SM ERAR+A +P PETALKCPRC+STNTKFCYFNNYSL+
Sbjct: 57  HNNGNGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLT 116

Query: 98  QPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSA 157
           QPRHFCK CRRYWTRGGALR+VPVGGGCRRNKR+K  +        +    +  +++S+ 
Sbjct: 117 QPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTKNSSGGGGGSTSSGNSKSQDSATSND 176

Query: 158 LSSRNIIGRMQNPQQQIP----------------MLPNLHHLNDYN-------------- 187
                    M N Q   P                ++P   H ++ N              
Sbjct: 177 QYHHRA---MANNQMGPPSSSSSLSSLLSSYNAGLIPGHDHNSNNNNILGLGSSLPPLKL 233

Query: 188 ------SSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFP 241
                 + +  L +G +  PS  +    +     + NG             +QW+   FP
Sbjct: 234 MPPLDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNG------------FDQWR---FP 278

Query: 242 FLSNGLEQVTGLYPFDTEI-MEPQS--YTI----GQLRSKS--------------AALDS 280
             +N L  + GL PFD +  ME Q+  Y +    GQ R K+              A + +
Sbjct: 279 -ATNQLP-LGGLDPFDQQHQMEQQNPGYGLVTGSGQYRPKNIFHNLISSSSSASSAMVTA 336

Query: 281 EATQFANVKMEDNTQSLNLSRNFLGINSANDHQYW 315
            A+Q A+VKMED+   LNLSR   G    ++ Q W
Sbjct: 337 TASQLASVKMEDSNNQLNLSRQLFG----DEQQLW 367

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 142/291 (48%), Gaps = 47/291 (16%)

Query: 59  SMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 118
           SM ERAR A +P     LKCPRC+S+NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRN
Sbjct: 60  SMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRN 119

Query: 119 VPVGGGCRRNKRSKGRN---SRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIP 175
           VPVGGGCRRN + KG+N     S S +       A + SS  L +            Q P
Sbjct: 120 VPVGGGCRRNNK-KGKNGNLKSSSSSSKQSSSVNAQSPSSGQLRT----------NHQFP 168

Query: 176 MLPNLHHLNDYNSSDIGLNF----GGIQIPSQGVACNGNDIGFQVANGTSN--SGSILSS 229
             P L++L       IGLN     G  Q    G +   +D+GF     TS   +G+I  +
Sbjct: 169 FSPTLYNLTQL--GGIGLNLAATNGNNQAHQIGSSLMMSDLGFLHGRNTSTPMTGNIHEN 226

Query: 230 G---------LVEQWKLQQFPFLSNGLEQVTGLYPF--DTEIMEPQSYTIGQLRSKSAAL 278
                     +     L  F       +  TGLY F  D  I       +G   S ++ +
Sbjct: 227 NNNNNNENNLMASVGSLSPFAL----FDPTTGLYAFQNDGNIGN----NVGISGSSTSMV 278

Query: 279 DSEATQFANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAW--SDLSG 327
           DS   Q   VKME+     NLSR   G+ S  +     TN   W  SD SG
Sbjct: 279 DSRVYQTPPVKMEEQPNLANLSRPVSGLTSPGNQ----TNQYFWPGSDFSG 325

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 5/90 (5%)

Query: 64  ARMAKMPQP-ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVG 122
           A     PQP E AL+CPRC+STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRN+PVG
Sbjct: 42  ATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVG 101

Query: 123 GGCRRNKRSKGRNSRS----KSPAVTEGQA 148
           GGCR+NKRS    +RS      PA  +G+ 
Sbjct: 102 GGCRKNKRSTSSAARSLRTTPEPASHDGKV 131

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 63/78 (80%)

Query: 59  SMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 118
           S T++   + + Q +  LKCPRC S NTKFCY+NNYSLSQPRHFCK+CRRYWTRGGALRN
Sbjct: 24  SQTKKPPSSSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRN 83

Query: 119 VPVGGGCRRNKRSKGRNS 136
           VP+GGGCR+ K+S   NS
Sbjct: 84  VPIGGGCRKTKKSIKPNS 101

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 60/80 (75%)

Query: 63  RARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVG 122
           RA    +     +LKCPRC S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LRNVPVG
Sbjct: 38  RAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVG 97

Query: 123 GGCRRNKRSKGRNSRSKSPA 142
           GGCR+ KRSK +   S S A
Sbjct: 98  GGCRKAKRSKTKQVPSSSSA 117

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%)

Query: 70  PQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNK 129
           PQ   ALKCPRC+S NTKFCY+NNYS+SQPR+FCK CRRYWT GG LRNVP+GGGCR+NK
Sbjct: 54  PQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNK 113

Query: 130 RS 131
            +
Sbjct: 114 HA 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 14/178 (7%)

Query: 67  AKMPQPE----TALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVG 122
           AK  QPE      LKCPRC+S NTKFCY+NNY+LSQPRHFCK CRRYWT+GGALRN+PVG
Sbjct: 20  AKQNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVG 79

Query: 123 GGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIPMLPNLHH 182
           GG R++ +  G +  S     T  +      S S      + G+  NP + +  LP    
Sbjct: 80  GGTRKSNKRSGSSPSSNLKNQTVAEKPDHHGSGSEEKEERVSGQEMNPTRMLYGLP---- 135

Query: 183 LNDYNSSDIG------LNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQ 234
           + D N +         +  GG+   S      G D+G      + ++ + L+   +E+
Sbjct: 136 VGDPNGASFSSLLASNMQMGGLVYESGSRWLPGMDLGLGSVRRSDDTWTDLAMNRMEK 193

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
147846631	338	hypothetical protein VITISV_020749 [Viti	0.955	0.952	0.597	3e-89
224113471	337	f-box family protein [Populus trichocarp	0.961	0.961	0.602	3e-87
225449501	338	PREDICTED: dof zinc finger protein DOF3.	0.955	0.952	0.592	4e-85
296086231	337	unnamed protein product [Vitis vinifera]	0.949	0.949	0.572	8e-81
224098409	334	f-box family protein [Populus trichocarp	0.958	0.967	0.560	1e-78
255580021	338	zinc finger protein, putative [Ricinus c	0.949	0.946	0.591	2e-76
224059504	332	f-box family protein [Populus trichocarp	0.958	0.972	0.518	3e-76
356542453	307	PREDICTED: dof zinc finger protein DOF3.	0.902	0.990	0.491	3e-74
225440336	333	PREDICTED: dof zinc finger protein DOF5.	0.943	0.954	0.522	2e-72
297740387	323	unnamed protein product [Vitis vinifera]	0.872	0.910	0.518	1e-71

>gi|147846631|emb|CAN79495.1| hypothetical protein VITISV_020749 [Vitis vinifera]

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 211/353 (59%), Positives = 240/353 (67%), Gaps = 31/353 (8%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTG-----AI 55
           MVFSSVPVYLDPPNWQQQ   +HQP   GG  D   LP     P     G  G      I
Sbjct: 1   MVFSSVPVYLDPPNWQQQ--ANHQP---GGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTI 55

Query: 56  RPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGA 115
           RP SM +RAR+AK+PQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGA
Sbjct: 56  RPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGA 115

Query: 116 LRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSR----NIIGRM--QN 169
           LRNVPVGGGCRRNKRSKG  +RSKSP   E Q   G+SS+SA+ S     ++IG +    
Sbjct: 116 LRNVPVGGGCRRNKRSKG--NRSKSPVTGERQ--GGSSSASAVPSNSCTSDMIGHLPPPP 171

Query: 170 PQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIP--SQGVACNGNDIGFQVANGTSNSGSIL 227
           P  Q+  LP LHHL DY + DIGLNFGGIQ P    G   +G DI F + + +   G IL
Sbjct: 172 PPPQLSFLPXLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 228 SSGLVEQWKL---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQ 284
           S GL EQW+L   QQFPFL+ GLE  +GLY F+ E  EP SY  G    ++ ALDS  TQ
Sbjct: 232 SGGLAEQWRLQQVQQFPFLA-GLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 285 FANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
              VK+E+N Q LNLSRNFLG+   ND QYW  + N W+DLSGF SS+TSHLL
Sbjct: 291 MTAVKIEEN-QGLNLSRNFLGL-PGND-QYW--SGNTWNDLSGFNSSTTSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113471|ref|XP_002332583.1| f-box family protein [Populus trichocarpa] gi|222832921|gb|EEE71398.1| f-box family protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 245/350 (70%), Gaps = 26/350 (7%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTG--AIRPN 58
           MVFSS+PVYLDPPNWQQQ   ++QP  G G  +    P       G  GG T   +IRP 
Sbjct: 1   MVFSSIPVYLDPPNWQQQH--NNQPPAGAGNENPQLPPPSGPPTGGGDGGGTTAGSIRPG 58

Query: 59  SMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 118
           SMT+RAR+AK+P PE ALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTRGGALRN
Sbjct: 59  SMTDRARLAKIPLPEMALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRN 118

Query: 119 VPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIPMLP 178
           VPVGGGCRRNKRSKG + RSKSP   +  +++    SS   + +I G M  P   +P+ P
Sbjct: 119 VPVGGGCRRNKRSKG-SGRSKSPV--KAGSSSSGGLSSNGGTTDITGNMTTPPPLLPIFP 175

Query: 179 NLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNS---GSILSSGLVEQW 235
            LHHL DYNS DIGLNFGGI       A  G  + FQ+ N TS++   GS+LSSGLVEQW
Sbjct: 176 PLHHLGDYNSPDIGLNFGGILPSVGATAGGGGGVEFQMENSTSSNSVGGSVLSSGLVEQW 235

Query: 236 KL-------QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSE-ATQFAN 287
           +L       QQ+PFLSN LE  +GLY F+   + P +Y  GQ+RS+   LDS   +Q A+
Sbjct: 236 RLQQVQHQVQQYPFLSN-LEPSSGLYSFEGGGIGPSNYA-GQIRSR--PLDSTGVSQLAS 291

Query: 288 VKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
           VKME N Q LNLSRNFLGI S ND QYWG  NNAW+DL GFTSSSTSHLL
Sbjct: 292 VKMEGN-QGLNLSRNFLGI-SGND-QYWG-GNNAWTDLPGFTSSSTSHLL 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449501|ref|XP_002278642.1| PREDICTED: dof zinc finger protein DOF3.6 [Vitis vinifera]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 209/353 (59%), Positives = 236/353 (66%), Gaps = 31/353 (8%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTG-----AI 55
           MVFSSVPVYLDPPNWQQQ   +HQP   GG  D   LP     P     G  G      I
Sbjct: 1   MVFSSVPVYLDPPNWQQQ--ANHQP---GGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTI 55

Query: 56  RPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGA 115
           RP SM +RAR+AK+PQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGA
Sbjct: 56  RPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGA 115

Query: 116 LRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRM------QN 169
           LRNVPVGGGCRRNKRSKG  +RSKSP   E Q   G+SS+SA+ S +    M        
Sbjct: 116 LRNVPVGGGCRRNKRSKG--NRSKSPVTGERQ--GGSSSASAVPSNSCTSDMIGHLPPPP 171

Query: 170 PQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIP--SQGVACNGNDIGFQVANGTSNSGSIL 227
           P  Q+  LP LHHL DY + DIGLNFGGIQ P    G   +G DI F + + +   G IL
Sbjct: 172 PPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 228 SSGLVEQWKL---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQ 284
           S GL E W+L   QQFPFL+ GLE  +GLY F+ E  EP SY  G    ++ ALDS  TQ
Sbjct: 232 SGGLAEHWRLQQVQQFPFLA-GLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 285 FANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
              VK+E+N Q LNLSRNFLG+   ND QYW  + N W+DLSGF SS+TSHLL
Sbjct: 291 MTAVKIEEN-QGLNLSRNFLGL-PGND-QYW--SGNTWNDLSGFNSSTTSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086231|emb|CBI31672.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 201/351 (57%), Positives = 230/351 (65%), Gaps = 31/351 (8%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTG-----AI 55
           MVFSSVPVYLDPPNWQQQ   +HQP   GG  D   LP     P     G  G      I
Sbjct: 1   MVFSSVPVYLDPPNWQQQ--ANHQP---GGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTI 55

Query: 56  RPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGA 115
           RP SM +RAR+AK+PQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGA
Sbjct: 56  RPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGA 115

Query: 116 LRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRM------QN 169
           LRNVPVGGGCRRNKRSKG  +RSKSP   E Q   G+SS+SA+ S +    M        
Sbjct: 116 LRNVPVGGGCRRNKRSKG--NRSKSPVTGERQ--GGSSSASAVPSNSCTSDMIGHLPPPP 171

Query: 170 PQQQIPMLPNLHHLNDYNSSDIGLNFGGIQIP--SQGVACNGNDIGFQVANGTSNSGSIL 227
           P  Q+  LP LHHL DY + DIGLNFGGIQ P    G   +G DI F + + +   G IL
Sbjct: 172 PPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPIL 231

Query: 228 SSGLVEQWKL---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQ 284
           S GL E W+L   QQFPFL+ GLE  +GLY F+ E  EP SY  G    ++ ALDS  TQ
Sbjct: 232 SGGLAEHWRLQQVQQFPFLA-GLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQ 290

Query: 285 FANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSH 335
              VK+E+N Q LNLSRNFLG+   ND QYW  + N W+DLSG   + ++ 
Sbjct: 291 MTAVKIEEN-QGLNLSRNFLGL-PGND-QYW--SGNTWNDLSGSVKAKSAQ 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098409|ref|XP_002311164.1| f-box family protein [Populus trichocarpa] gi|222850984|gb|EEE88531.1| f-box family protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 195/348 (56%), Positives = 236/348 (67%), Gaps = 25/348 (7%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSM 60
           MVFSS+P YL   NWQQQ   ++QP G G           P    G G GSTG+ RP SM
Sbjct: 1   MVFSSIPAYLGSRNWQQQ--PNNQPPGAGNENPQLPPQPAPPPGGGYGDGSTGSFRPGSM 58

Query: 61  TERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 120
           T+RAR+AK+  PETALKCPRC+S NTKFCYFNNYSLSQPRHFCKTCRRYWT GGALRNVP
Sbjct: 59  TDRARLAKVQLPETALKCPRCQSPNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVP 118

Query: 121 VGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIPMLPNL 180
           VGGGCRRNKRSKG + RSK P      ++ G +S+   +  +I+G M  P  Q+P+LP L
Sbjct: 119 VGGGCRRNKRSKG-SGRSKFPIKAVSSSSGGLASNCCTA--DILGHMPPPPPQLPILPPL 175

Query: 181 HHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSN---SGSILSSGLVEQWKL 237
           HHL DYNS+DIGL+FGGIQ      A  G+ + FQ+ + TS+   +GS+LSSGLVEQW+L
Sbjct: 176 HHLGDYNSADIGLDFGGIQHSIGVTAGGGDGVEFQIGSSTSSNGVAGSLLSSGLVEQWRL 235

Query: 238 -------QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSE-ATQFANVK 289
                  QQFPF SN +E  +GL+ F+   +E  +Y  GQ+RSK   LD+   T  A VK
Sbjct: 236 QQVQQQVQQFPFFSN-MEPPSGLFSFEGGGIESSNYA-GQIRSK--PLDTTGVTHLATVK 291

Query: 290 MEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
            E+N Q LNLS+  LGI+  + H  WG  NNAW+DL GFT SSTSHLL
Sbjct: 292 TEEN-QRLNLSKKVLGISGIDQH--WG-GNNAWTDLPGFT-SSTSHLL 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580021|ref|XP_002530844.1| zinc finger protein, putative [Ricinus communis] gi|223529568|gb|EEF31518.1| zinc finger protein, putative [Ricinus communis]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 210/355 (59%), Positives = 245/355 (69%), Gaps = 35/355 (9%)

Query: 1   MVFSSV-PVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGA----- 54
           MVFSS+ PVYLDPPNW QQ  ++ QP G GG  +  QLP PP  P G GG   G      
Sbjct: 1   MVFSSINPVYLDPPNWHQQ--SNQQPGGAGG--ESHQLPPPPPPPGGGGGVGGGGSGGST 56

Query: 55  --IRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 112
             IRP SM ERARMAK+PQPETALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTR
Sbjct: 57  GSIRPGSMAERARMAKVPQPETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTR 116

Query: 113 GGALRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQ 172
           GGALRNVPVGGGCRRNKRSKG N   +S + ++  +++ +   S     +IIG M  P  
Sbjct: 117 GGALRNVPVGGGCRRNKRSKGSN---RSKSPSKAGSSSSSGLVSNSCINDIIGHMPPPPP 173

Query: 173 QIPMLPNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQV----ANGTSNSGSILS 228
            +P+LP LHHL D+NS+DIGLNF GIQ      A  G  + FQ+    + G    GSILS
Sbjct: 174 HLPILPPLHHLTDFNSTDIGLNFSGIQPQVVAPAGGGAGMEFQIGSTSSGGGGGVGSILS 233

Query: 229 SGLVEQWKL---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQF 285
           SGLV+QW+L   QQFPFL N LE   GLY F+ E   P +Y +GQLRSK   L++  TQ 
Sbjct: 234 SGLVDQWRLQQAQQFPFLPN-LE--PGLYHFEGEGAGPPNY-VGQLRSK--PLETGVTQR 287

Query: 286 ANVKMEDNT---QSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
           A+VKME+N    Q LNLS+NF    S ND Q+WG NNNAW+D+ GF SSSTSHLL
Sbjct: 288 ASVKMEENNHHHQGLNLSKNFF---SGND-QFWGGNNNAWTDIPGFNSSSTSHLL 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059504|ref|XP_002299879.1| f-box family protein [Populus trichocarpa] gi|222847137|gb|EEE84684.1| f-box family protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 179/345 (51%), Positives = 216/345 (62%), Gaps = 22/345 (6%)

Query: 1   MVFSSVPVYLDPPNWQQQ----QPTHHQPQGGGGGIDGSQLPLPPMLPMGSGG-GSTGAI 55
           MVFSSVP YLDPPNWQQQ         QP    G  + S    P   P   GG G+ G I
Sbjct: 1   MVFSSVPFYLDPPNWQQQPLNFSILQQQPSQQPGASNESPQLPPLPPPTHVGGSGTAGTI 60

Query: 56  RPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGA 115
           RP SM +RAR+AK+PQPE ALKCPRCESTNTKFCYFNNY+LSQPRHFCKTCRRYWTRGGA
Sbjct: 61  RPGSMADRARLAKIPQPEVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGA 120

Query: 116 LRNVPVGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIP 175
           LR+VPVGGGCRRNK+ K ++S       +E Q  + +SS+SAL S+ +IG +   Q Q+P
Sbjct: 121 LRSVPVGGGCRRNKKRKVQSSSKSP-VSSERQVGSTSSSTSALPSQ-VIGHLPQQQSQLP 178

Query: 176 MLPNLHHLNDYNSSDIGLNFGGI--QIPSQGVACNGNDIGFQV-ANGTSNSGSILSSGLV 232
            + +LH+L  +   +IGLNFGGI  Q+ S   A    D+GFQ+ +N   NS +ILS+G V
Sbjct: 179 YMTSLHNLAQFGEGNIGLNFGGIQGQLGSTSGASGQTDMGFQIGSNSGMNSSAILSAGGV 238

Query: 233 EQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMED 292
                 QFPF         GLYP  +E  E      G  + +S    S  +Q A VK E 
Sbjct: 239 H-----QFPFFE---FSPAGLYPLQSEGAETPISVHGDNQLQSMTSSSRVSQLAPVKTEG 290

Query: 293 NTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
           N Q LNLS+ +LG    N+  YWG   N W+DLSG  SSSTSHLL
Sbjct: 291 N-QGLNLSKPYLGA-PQNNQYYWG--GNTWADLSGLNSSSTSHLL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542453|ref|XP_003539681.1| PREDICTED: dof zinc finger protein DOF3.6-like [Glycine max]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/340 (49%), Positives = 223/340 (65%), Gaps = 36/340 (10%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSM 60
           MVFSS+PV++DPPNWQQQ P H  PQ    G D SQL  P        GGS G+IRP SM
Sbjct: 1   MVFSSIPVFVDPPNWQQQ-PNH--PQASNNGGDNSQLLPPLPPHQPHVGGSVGSIRPGSM 57

Query: 61  TERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 120
            +RAR+AK+P PE ALKCPRC+STNTKFCYFNNYSLSQPRHFCKTCRRYWT GGALRNVP
Sbjct: 58  ADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVP 117

Query: 121 VGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSS--SALSSRNIIGRMQNPQQQIPMLP 178
           VGGGCRRNK++K   SRSKSPA +E Q  +G++S+  S  ++  ++G++  P   +P + 
Sbjct: 118 VGGGCRRNKKNK--RSRSKSPASSEKQTLSGSTSATPSGGTTHELVGQLPQP-PNLPFMA 174

Query: 179 NLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQ 238
           +L +LN Y   ++GL    I   ++       ++GFQ+ N ++  G +      +QW++Q
Sbjct: 175 SLQNLNRYAVGNMGLGLREIHGQNE-------NMGFQIGNSSAAGGGM------DQWRIQ 221

Query: 239 QFPFLSNGLEQVT-GLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNTQSL 297
           Q PFL NG E  + G YPF  E +E  S   G +     A +S  +Q  +VKME+ + +L
Sbjct: 222 QVPFL-NGFESTSAGSYPFQNEGIETPSGFGGDI-----ATNSRVSQMPSVKMEE-SGAL 274

Query: 298 NLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
           NLSR+ L  N + ++QY+     +W+D+SG  SSS +HLL
Sbjct: 275 NLSRSTL--NVSENNQYY-----SWTDMSGLASSSATHLL 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440336|ref|XP_002270031.1| PREDICTED: dof zinc finger protein DOF5.1-like [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 184/352 (52%), Positives = 220/352 (62%), Gaps = 34/352 (9%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSM 60
           MVFSS+P YLDP NWQQ     H  + G  G+     P PP  P   GGG TG+IRP SM
Sbjct: 1   MVFSSMPSYLDPANWQQP----HNHEAGSSGLPNQPPPPPPPPPQPHGGGGTGSIRPGSM 56

Query: 61  TERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 120
            +RAR+A +P PE ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP
Sbjct: 57  ADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 116

Query: 121 VGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIP---ML 177
           VGGGCRRNKRSKG +S+S      +    AG+SS+ A+ S      +     QIP    +
Sbjct: 117 VGGGCRRNKRSKGSSSKSPVSGDRQ----AGSSSTGAIHSNCSTAEILGLAPQIPPMRFM 172

Query: 178 PNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQV---------ANGTSNSGSILS 228
             LHHL DY + DIGLN+ GI     G      D+ FQ+                GS LS
Sbjct: 173 APLHHLADYGAGDIGLNYSGIPTAVGGTG----DMNFQIGSHLGGGSSGGAGGVGGSFLS 228

Query: 229 SGLVEQWKL---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQF 285
            G +EQW+L   QQFPFL  GL+   GLYP +  + EP +Y  G  + +     S  +Q 
Sbjct: 229 VGGLEQWRLQQTQQFPFLG-GLDPPPGLYPLEGGV-EPSNYVGGSSQVRPKLTGSGLSQV 286

Query: 286 ANVKMEDNTQSLNLSRNFLGINSANDHQYWGTNNNAWSDLSGFTSSSTSHLL 337
           A+VKMEDN + +N++R FLGI   ND QYWG   NAW+DL+ F+SSSTSH L
Sbjct: 287 ASVKMEDNHE-MNVARQFLGI-PGND-QYWG--GNAWTDLASFSSSSTSHPL 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740387|emb|CBI30569.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 172/332 (51%), Positives = 207/332 (62%), Gaps = 38/332 (11%)

Query: 1   MVFSSVPVYLDPPNWQQQQPTHHQPQGGGGGIDGSQLPLPPMLPMGSGGGSTGAIRPNSM 60
           MVFSS+P YLDP NWQQ     H  + G  G+     P PP  P   GGG TG+IRP SM
Sbjct: 1   MVFSSMPSYLDPANWQQP----HNHEAGSSGLPNQPPPPPPPPPQPHGGGGTGSIRPGSM 56

Query: 61  TERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 120
            +RAR+A +P PE ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP
Sbjct: 57  ADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 116

Query: 121 VGGGCRRNKRSKGRNSRSKSPAVTEGQATAGTSSSSALSSRNIIGRMQNPQQQIP---ML 177
           VGGGCRRNKRSKG +S+S      +    AG+SS+ A+ S      +     QIP    +
Sbjct: 117 VGGGCRRNKRSKGSSSKSPVSGDRQ----AGSSSTGAIHSNCSTAEILGLAPQIPPMRFM 172

Query: 178 PNLHHLNDYNSSDIGLNFGGIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKL 237
             LHHL DY + DIGLN+ GI     G      D+ FQ+             G +EQW+L
Sbjct: 173 APLHHLADYGAGDIGLNYSGIPTAVGGTG----DMNFQI-------------GSLEQWRL 215

Query: 238 ---QQFPFLSNGLEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNT 294
              QQFPFL  GL+   GLYP +  + EP +Y  G  + +     S  +Q A+VKMEDN 
Sbjct: 216 QQTQQFPFLG-GLDPPPGLYPLEGGV-EPSNYVGGSSQVRPKLTGSGLSQVASVKMEDNH 273

Query: 295 QSLNLSRNFLGINSANDHQYWGTNNNAWSDLS 326
           + +N++R FLGI   ND QYWG   NAW+DL+
Sbjct: 274 E-MNVARQFLGI-PGND-QYWG--GNAWTDLA 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.204	0.172	0.840	2.9e-41
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.694	0.688	0.384	7.3e-38
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.727	0.742	0.375	4e-37
TAIR|locus:2026595	339	OBP2 [Arabidopsis thaliana (ta	0.186	0.185	0.746	6.9e-32
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.189	0.181	0.646	2.1e-25
TAIR|locus:2094746	204	DOF2 "DOF zinc finger protein	0.181	0.299	0.692	5.6e-25
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.204	0.239	0.611	1e-23
TAIR|locus:2039959	369	DAG2 "DOF AFFECTING GERMINATIO	0.189	0.173	0.646	1.1e-23
TAIR|locus:2159275	307	OBP4 "OBF binding protein 4" [	0.175	0.192	0.694	2.1e-23
TAIR|locus:2155755	316	AT5G65590 [Arabidopsis thalian	0.198	0.212	0.671	6.1e-23

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 2.9e-41, Sum P(3) = 2.9e-41
 Identities = 58/69 (84%), Positives = 63/69 (91%)

Query:    53 GAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 112
             G IRP SM ERAR+A +P PETALKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTR
Sbjct:    72 GLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTR 131

Query:   113 GGALRNVPV 121
             GGALR+VPV
Sbjct:   132 GGALRSVPV 140

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 101/263 (38%), Positives = 131/263 (49%)

Query:    62 ERARMAKMPQP-ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVP 120
             ERAR+AK  QP E ALKCPRC+S NTKFCYFNNY+L+QPRHFCK CRRYWTRGGALRNVP
Sbjct:    79 ERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVP 138

Query:   121 VXXXXXXXXXXXXXXXXXXXPAVTEGQATAGTXXXXXXXXRNIIGRMQNPQQQIPMLPNL 180
             V                    +  + Q+T+           N+  ++Q    Q P LP L
Sbjct:   139 VGGGCRRNKKGKSGNSKSSSSSQNK-QSTSMVNATSPTNTSNV--QLQT-NSQFPFLPTL 194

Query:   181 HHLNDYNSSDIGLNFGGIQIPSQGVACNG----NDIGFQVANGTSNSGSILSSGLVEQWK 236
              +L       IGLN   I   + G         ND+GF   +G + SG ++ +   E   
Sbjct:   195 QNLTQLGG--IGLNLAAINGNNGGNGNTSSSFLNDLGF--FHGGNTSGPVMGNNN-ENNL 249

Query:   237 LQQFPFLSNG--LEQVTGLYPFDTEIMEPQSYTIGQLRSKSAALDSEATQFANVKMEDNT 294
             +      S+    ++  GLY F  E+    S +IG  R          +Q A VKMEDN 
Sbjct:   250 MTSLGSSSHFALFDRTMGLYNFPNEVNMGLS-SIGATR---------VSQTAQVKMEDNH 299

Query:   295 QSLNLSRNFLGINSAND--HQYW 315
                N+SR   G+ S  +  +QYW
Sbjct:   300 LG-NISRPVSGLTSPGNQSNQYW 321

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 107/285 (37%), Positives = 144/285 (50%)

Query:    53 GAIRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 112
             G+IR  SM +RAR A +  PE ALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTR
Sbjct:    66 GSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTR 125

Query:   113 GGALRNVPVXXXXXXXXXXXXXXXXXXXPAVTEGQAT--AGTXXXXXXXXRNIIGRMQNP 170
             GGALRNVPV                      T    +  +G          +  G  Q  
Sbjct:   126 GGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTILSSHYGGNQES 185

Query:   171 -QQQI--P---MLPNLHHLNDYNSS---DIG---LNFGGIQIPSQGVACNGNDIGFQVAN 218
                QI  P   M P  +HL D  S+   D     LN+GG+   SQ +          +  
Sbjct:   186 ILSQILSPARLMNPTYNHLGDLTSNTKTDNNMSLLNYGGL---SQDLR--------SIHM 234

Query:   219 GTSNSGSILSSGLVEQWKLQQFPFLSNGLEQVTGLYPFDTEIMEPQS---YTIGQLRSKS 275
             G S  GS++S   V++W+   +   S+    + G    D+    P +   Y+    R  S
Sbjct:   235 GASG-GSLMSC--VDEWRSASYHQQSS----MGGGNLEDSSNPNPSANGFYSFESPRITS 287

Query:   276 AALDSE-ATQFANVKMEDNTQS-LNLSRNFLGINSANDHQYWGTN 318
             A++ S  A+QF++VK+EDN    +N++ N    +S ND   +G++
Sbjct:   288 ASISSALASQFSSVKVEDNPYKWVNVNGN---CSSWNDLSAFGSS 329

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2026595 OBP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query:    59 SMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 118
             SM ERAR A +P     LKCPRC+S+NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRN
Sbjct:    68 SMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRN 127

Query:   119 VPV 121
             VPV
Sbjct:   128 VPV 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 42/65 (64%), Positives = 51/65 (78%)

Query:    57 PNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAL 116
             P+  T   R A+ P+ + AL CPRC S NTKFCY+NNYSL+QPR+FCK CRRYWT GG+L
Sbjct:    31 PSPATPVERKAR-PEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query:   117 RNVPV 121
             RN+PV
Sbjct:    90 RNIPV 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2094746 DOF2 "DOF zinc finger protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 45/65 (69%), Positives = 53/65 (81%)

Query:    61 TERARMAKMPQPETA----LKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAL 116
             T  A+  +  QP+ A    LKCPRC+S NTKFCY+NNY+LSQPRHFCK+CRRYWT+GGAL
Sbjct:    10 TMMAKQQQQQQPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGAL 69

Query:   117 RNVPV 121
             RNVPV
Sbjct:    70 RNVPV 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 44/72 (61%), Positives = 51/72 (70%)

Query:    53 GAIRPNSMTERARMAKMPQPET---ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRY 109
             G+   N   E     K+ + E    A  CPRCES NTKFCY+NNYSLSQPR+FCK+CRRY
Sbjct:    22 GSNNNNKKMEEEMKKKVSRGELGGEAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRY 81

Query:   110 WTRGGALRNVPV 121
             WT+GG LRNVPV
Sbjct:    82 WTKGGTLRNVPV 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2039959 DAG2 "DOF AFFECTING GERMINATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 42/65 (64%), Positives = 51/65 (78%)

Query:    58 NSMTERARMA-KMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAL 116
             N+    A +A +  +P+  L CPRC STNTKFCY+NNYSL+QPR+FCK CRRYWT GG+L
Sbjct:    61 NNNNNTAVVAERKARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSL 120

Query:   117 RNVPV 121
             RNVPV
Sbjct:   121 RNVPV 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2159275 OBP4 "OBF binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 41/59 (69%), Positives = 46/59 (77%)

Query:    63 RARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 121
             RA    +     +LKCPRC S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LRNVPV
Sbjct:    38 RAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 96

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2155755 AT5G65590 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 45/67 (67%), Positives = 53/67 (79%)

Query:    55 IRPNSMTERARMAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGG 114
             I   S T++   + + Q +  LKCPRC S NTKFCY+NNYSLSQPRHFCK+CRRYWTRGG
Sbjct:    20 ISGTSQTKKPPSSSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGG 79

Query:   115 ALRNVPV 121
             ALRNVP+
Sbjct:    80 ALRNVPI 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	4e-40

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  135 bits (341), Expect = 4e-40
 Identities = 48/63 (76%), Positives = 56/63 (88%)

Query: 71  QPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKR 130
           +P+ ALKCPRC+S NTKFCY+NNY+L+QPR+FCK CRRYWT GGALRNVPVGGG R+NKR
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 131 SKG 133
           S  
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	95.08
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.48
COG3677	129	Transposase and inactivated derivatives [DNA repli	91.88
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.65
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	88.43
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.82

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.2e-37  Score=238.47  Aligned_cols=63  Identities=78%  Similarity=1.575  Sum_probs=60.4

Q ss_pred             CCcccCCCCCCCCCCcceeeeccccCCCCcccchhcccccccCcccccccCCCCcccCCCCCC
Q 019668           71 QPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKG  133 (337)
Q Consensus        71 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnvPvGgG~Rknkr~~~  133 (337)
                      .||+.++||||+|+||||||||||+++||||||++|+||||+||+||||||||||||+|++++
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            478999999999999999999999999999999999999999999999999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=95.08  E-value=0.014  Score=51.54  Aligned_cols=34  Identities=24%  Similarity=0.705  Sum_probs=27.3

Q ss_pred             cCCCCCCCCCCcceeeecccc--CCCCcccchhccccc
Q 019668           75 ALKCPRCESTNTKFCYFNNYS--LSQPRHFCKTCRRYW  110 (337)
Q Consensus        75 ~~~CPRC~S~~Tkfcy~NNy~--~~QPR~fCk~CrRyW  110 (337)
                      ...||||.|.+|+.  .+.|-  .++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            47999999999997  56664  457779999998644

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.48  E-value=0.097  Score=37.46  Aligned_cols=36  Identities=33%  Similarity=0.787  Sum_probs=25.9

Q ss_pred             hcCCCCCcccCCCCCCCCCCcceeeeccccCCCCcccchhccc
Q 019668           66 MAKMPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR  108 (337)
Q Consensus        66 ~a~~p~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR  108 (337)
                      |+.+-=|+. ..||+|.+.  +...+.+    ..++.|++|++
T Consensus        10 l~~~RW~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   10 LEEIRWPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             HHHhcCCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            344444453 669999998  6555555    78899999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.88  E-value=0.11  Score=45.06  Aligned_cols=36  Identities=31%  Similarity=0.652  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCCcceeeeccccCCCCcccchhccccccc
Q 019668           75 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR  112 (337)
Q Consensus        75 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~  112 (337)
                      ...||+|.+.+.+  =++-+.....|+.|++|++-|+.
T Consensus        30 ~~~cP~C~s~~~~--k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          30 KVNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             cCcCCCCCcccee--eECCccccccccccCCcCcceee
Confidence            3789999999922  25555555999999999998874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.65  E-value=0.1  Score=36.60  Aligned_cols=30  Identities=43%  Similarity=0.782  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCcceeeeccccC-CCCcccchhcc
Q 019668           76 LKCPRCESTNTKFCYFNNYSL-SQPRHFCKTCR  107 (337)
Q Consensus        76 ~~CPRC~S~~Tkfcy~NNy~~-~QPR~fCk~Cr  107 (337)
                      +.||+|.+++.-  |=|-.+. -..||+|++|+
T Consensus         6 v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            789999998721  1334433 35899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=88.43  E-value=0.44  Score=33.70  Aligned_cols=37  Identities=24%  Similarity=0.719  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCcceeeeccccCCCC---cccchhccccccc
Q 019668           76 LKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWTR  112 (337)
Q Consensus        76 ~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT~  112 (337)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|..
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999988777755555655555   4999999999963

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.82  E-value=0.61  Score=32.72  Aligned_cols=36  Identities=28%  Similarity=0.768  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCcceeeeccccCCCCc---ccchhcccccc
Q 019668           76 LKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWT  111 (337)
Q Consensus        76 ~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT  111 (337)
                      .+||.|...+..|=-.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999988776545555555553   89999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 38/302 (12%), Positives = 71/302 (23%), Gaps = 89/302 (29%)

Query: 59  SMTERARMAKMPQPETALK------CPRCESTNTKF---CYFNNYS--LSQPRHFCK--- 104
           S  E   +       +           + E    KF       NY   +S  +   +   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 105 -------TCR-RYWTRGGAL--RNVPVGGGCRRNKRSKGRNS----RSKSPAVTEGQATA 150
                    R R +         NV      R     K R +    R     + +G   +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 151 GTSS--SSALSSRNI------------IGRMQNPQQQIPMLPNLHHLNDYNSSDIGLNFG 196
           G +        S  +            +    +P+  + ML  L +  D           
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----------- 210

Query: 197 GIQIPSQGVACNGNDIGFQVANGTSNSGSILSSGLVEQWKLQQFPFLSNGL---EQVTGL 253
                      N        +N      SI  + L    K + +    N L     V   
Sbjct: 211 ----------PNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYE---NCLLVLLNV--- 253

Query: 254 YPFDTEIMEP---QSYTIGQLRSKSAALDSEATQFANVKMEDN------TQSLNLSRNFL 304
              + +           +   R K       A    ++ ++ +       +  +L   +L
Sbjct: 254 --QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 305 GI 306
             
Sbjct: 312 DC 313

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
1tfi_A	50	Transcriptional elongation factor SII; transcripti	81.09

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=81.09  E-value=1.1  Score=32.05  Aligned_cols=37  Identities=22%  Similarity=0.675  Sum_probs=28.2

Q ss_pred             cCCCCCCCCCCcceeeeccccCCCCc---ccchhcccccc
Q 019668           75 ALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWT  111 (337)
Q Consensus        75 ~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT  111 (337)
                      ..+||+|...+..|--.+..+...|-   |.|..|..-|.
T Consensus         9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            47899999888777555555555553   89999998885

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	89.08
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	89.03
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	80.75

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.08  E-value=0.16  Score=37.50  Aligned_cols=45  Identities=20%  Similarity=0.496  Sum_probs=33.5

Q ss_pred             CCcccCCCCCCCCCCcceeeeccccCCCCc---ccchhcccccccCcc
Q 019668           71 QPETALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTRGGA  115 (337)
Q Consensus        71 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~GG~  115 (337)
                      +|..-..||+|...+.-|-+.+-.+..-|-   |.|..|.-.|+.-.+
T Consensus        19 lp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          19 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            445558999999888777666665554444   899999999998443

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.13  Score=35.78  Aligned_cols=37  Identities=22%  Similarity=0.674  Sum_probs=31.2

Q ss_pred             ccCCCCCCCCCCcceeeeccccCCCCc---ccchhccccc
Q 019668           74 TALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYW  110 (337)
Q Consensus        74 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyW  110 (337)
                      ..++||+|.+.+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            457999999999887777777777776   8999999888

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=80.75  E-value=0.4  Score=33.82  Aligned_cols=42  Identities=21%  Similarity=0.633  Sum_probs=31.1

Q ss_pred             CCcccCCCCCCCCCCcceeeeccccCCCCc---ccchhccccccc
Q 019668           71 QPETALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTR  112 (337)
Q Consensus        71 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~  112 (337)
                      +|-...+||+|...+.-|--.+-.+..-|-   +.|..|.--|..
T Consensus        11 ~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             CCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            344458999999988887655555555554   899999999864