Query 019669
Match_columns 337
No_of_seqs 131 out of 1325
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.4 3E-05 1E-09 74.5 19.5 64 96-162 190-253 (445)
2 4djk_A Probable glutamate/gamm 98.3 0.00011 3.6E-09 72.1 21.6 60 100-162 204-263 (511)
3 3gia_A Uncharacterized protein 97.9 0.00094 3.2E-08 64.0 19.1 63 95-160 186-248 (444)
4 2jln_A MHP1; hydantoin, transp 83.5 33 0.0011 33.0 18.4 34 24-58 143-176 (501)
5 3mp7_B Preprotein translocase 29.8 58 0.002 21.8 3.6 29 123-157 22-50 (61)
6 2ww9_B Protein transport prote 23.3 76 0.0026 22.5 3.4 33 119-157 35-67 (80)
7 2wwb_B SEC61gamma, protein tra 20.7 56 0.0019 22.5 2.2 31 121-157 23-53 (68)
8 1rh5_B Preprotein translocase 20.4 83 0.0028 22.0 3.1 30 122-157 25-54 (74)
9 1afo_A Glycophorin A; integral 9.1 3.6E+02 0.012 16.2 4.1 22 303-324 13-34 (40)
10 3dh4_A Sodium/glucose cotransp 8.0 1.3E+03 0.043 21.8 21.7 34 25-58 135-168 (530)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.35 E-value=3e-05 Score=74.54 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669 96 IWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 96 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
..+...++....|+|.|........+|+|||+ |+.+|++..+...+.++|...........+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34677889999999999999999999999984 78999999999999999999988776666654
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.27 E-value=0.00011 Score=72.07 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 019669 100 FQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL 162 (337)
Q Consensus 100 ~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG~~ 162 (337)
..++....|+|.|.......-+|+|||+ |+.+|++..+...+.++|....+.-....+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3457778999999999999999999995 78999999999999999999988777666655
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.87 E-value=0.00094 Score=64.00 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHhcCcceehhhhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 019669 95 KIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 160 (337)
Q Consensus 95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~~fG 160 (337)
++.+.+.++....|+|.|........+|+|||+ |+.+|++..+...+.++|....+......+
T Consensus 186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 186 AVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334677888888999999999999999999993 679999999999999999988776555444
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=83.46 E-value=33 Score=33.02 Aligned_cols=34 Identities=15% Similarity=0.510 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 019669 24 NPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 58 (337)
Q Consensus 24 ~~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~ 58 (337)
..+.+++.++.+++. ..-++.+.++..++....+
T Consensus 143 ~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 143 PLWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHH
Confidence 455666777777777 4457777777777654433
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=29.80 E-value=58 Score=21.83 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=16.6
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019669 123 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 123 M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
-++| +.+.|.++...+.+- ..++|++||.
T Consensus 22 ~~KP--d~~Ef~~iak~~~iG----~~i~G~iGf~ 50 (61)
T 3mp7_B 22 TKKP--NWATYKRAAKITGLG----IILIGLIGML 50 (61)
T ss_dssp SCCC--CTTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3565 668888765543322 2455666664
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=23.26 E-value=76 Score=22.53 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=19.5
Q ss_pred hhhhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019669 119 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 119 i~~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
+..--++| +.+.|.++...+.+ =..++|++||.
T Consensus 35 vlk~~~KP--dr~Ef~~iak~t~i----G~~imG~IGfi 67 (80)
T 2ww9_B 35 FLAKCKKP--DLKEYTKIVKAVGI----GFIAVGIIGYA 67 (80)
T ss_dssp HHHSCCCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33444666 66788876554332 23567777775
No 7
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.69 E-value=56 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=18.2
Q ss_pred hhcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019669 121 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 121 ~~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
+--++| +.+.|.++...+.+ =..++|++||.
T Consensus 23 k~~~KP--dr~Ef~~iak~~~i----G~~i~G~IGf~ 53 (68)
T 2wwb_B 23 KRCTKP--DRKEFQKIAMATAI----GFAIMGFIGFF 53 (68)
T ss_dssp HHCCCC--CTHHHHHHHHHSSH----HHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 334665 66788876554332 23566777775
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=20.39 E-value=83 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=17.4
Q ss_pred hcCCCCccchhhhhHHHHHHHHHHHHHHHHHhHHhh
Q 019669 122 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 157 (337)
Q Consensus 122 ~M~~P~~s~~~f~~~l~~s~~~~~~iY~~vg~~gY~ 157 (337)
--++| +.+.|.++...+.+ -..++|++||.
T Consensus 25 ~~~KP--dr~EF~~iak~~~i----G~~imG~IGfi 54 (74)
T 1rh5_B 25 VLKKP--TKDEYLAVAKVTAL----GISLLGIIGYI 54 (74)
T ss_dssp SEECC--CHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33565 66788876554432 23556777765
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=9.12 E-value=3.6e+02 Score=16.24 Aligned_cols=22 Identities=9% Similarity=-0.001 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019669 303 ILSVACLIITIAAAAGSIAGVV 324 (337)
Q Consensus 303 ~i~v~~ii~gv~gt~~si~~ii 324 (337)
.+.++++..|+.|++-.+.--|
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888885554433
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.95 E-value=1.3e+03 Score=21.76 Aligned_cols=34 Identities=9% Similarity=0.307 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 019669 25 PYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 58 (337)
Q Consensus 25 ~~~ii~~~~~~pLs~~r~l~~ls~~S~ia~~~~~ 58 (337)
.-+++.++++..-+..-=++...|.-.+=.+..+
T Consensus 135 ~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 135 YSILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777777655443
Done!