BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019670
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 43 YCSDASIARHLRAQNWNVKKATKMLKETLKWRAEY--------KPEEIRWDEIANEAETG 94
+ + R+LRA W +K + TL WR E+ ++I D +A E E+G
Sbjct: 84 WLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESG 143
Query: 95 KIYRLNYVDKYGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQ 154
K L Y + R +L ++P QNTK++ Q+++LV+ +E I +P Q+ + LIDF+
Sbjct: 144 KQVILGYEND-ARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFK 202
Query: 155 GF--------NLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLEL 206
+ N + V +E H+LQ HYPERLG A+L N P F ++ PF++
Sbjct: 203 DYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDP 262
Query: 207 KTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVGFNINKY 252
T+ K+ F D+ + + + ++L+S +GG+ + +N + Y
Sbjct: 263 LTREKLVF---DEPFVKYVPK-----NELDSLYGGDLKFKYNHDVY 300
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 19/203 (9%)
Query: 51 RHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEA-----ETGKIYRLNYVDKY 105
R +RA+ +NV +A ++L+ + +R +Y PE +D ++ EA E G L+ DKY
Sbjct: 97 RFIRARKFNVGRAYELLRGYVNFRLQY-PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 106 GRAVLVMR-PSCQNTKSTKGQIRYLVYC--MENAILNLPPHQEQMVWLIDFQGFNLSHIS 162
GR V++ + Q+ + T +I YC +E + N + +F+GF + +
Sbjct: 154 GRVVMLFNIENWQSQEITFDEI-LQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAA 212
Query: 163 VKVT---RETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDD 219
T R+ +LQD +P R + P +F + VVKPFL+ K +V FV+ DD
Sbjct: 213 SLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FVHGDD 271
Query: 220 INTRRIMEDLFDMDQLESAFGGN 242
++ D + L S FGG
Sbjct: 272 LSG---FYQEIDENILPSDFGGT 291
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWD-EIANEAE------TGKIYR 98
D+++ R LRA+ +++ + +M ET +WR EY I D E EAE K+Y
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 99 LNY--VDKYGRAVLVMRPSCQNTK------STKGQIRYLVYCME-NAILNLPPHQEQMVW 149
Y VDK GR + N K + K +R LV E A +P + +
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGY 180
Query: 150 LI-------DFQGFNLS---HISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTV 199
LI D +G +LS H+ + ++ A + Q++YPER+G + + P F + +
Sbjct: 181 LIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 200 VKPFLELKTQNKV 212
VKPFL+ T +K+
Sbjct: 240 VKPFLDPVTVSKI 252
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWD-EIANEAE------TGKIYR 98
D+++ R LRA+ +++ + +M ET +WR EY I D E EAE K+Y
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 99 LNY--VDKYGRAVLVMRPSCQNTK------STKGQIRYLVYCME-NAILNLPPHQEQMVW 149
Y VDK GR + N K + K +R LV E A +P + +
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGY 180
Query: 150 LI-------DFQGFNLS---HISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTV 199
LI D +G +LS H+ + ++ A + Q++YPER+G + + P F + +
Sbjct: 181 LIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 200 VKPFLELKTQNKV 212
VKPFL+ T +K+
Sbjct: 240 VKPFLDPVTVSKI 252
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEAE-TGKIYRLNY--V 102
D+++ R LRA+ ++V+ A +M + KWR +Y + I D +E K Y Y
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111
Query: 103 DKYGRAVLVMRPSCQN------TKSTKGQIRYLVYCMENAI-LNLPPHQ-------EQMV 148
DK GR V N S + ++ LV+ E+ + LP E
Sbjct: 112 DKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSC 171
Query: 149 WLIDFQGFNLS--HISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLEL 206
++D +G ++S + + RE +++ Q++YPER+G + N P F + + KPFL+
Sbjct: 172 TIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDP 231
Query: 207 KTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRV 245
T +K+ F+ + + + L FGG V
Sbjct: 232 VTVSKI-FILGSSYQKELLKQ--IPAENLPVKFGGKSEV 267
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 51 RHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIANEA-----ETGKIYRLNYVDKY 105
R +RA+ +NV +A ++L+ + +R +Y PE +D ++ EA E G L+ DKY
Sbjct: 97 RFIRARKFNVGRAYELLRGYVNFRLQY-PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 106 GRAVLVMR-PSCQNTKSTKGQIRYLVYC--MENAILNLPPHQEQMVWLIDFQGFNLSHIS 162
GR V + + Q+ + T +I YC +E + N + +F+GF +
Sbjct: 154 GRVVXLFNIENWQSQEITFDEI-LQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAA 212
Query: 163 VKVT---RETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDD 219
T R+ LQD +P + P +F + VVKPFL+ K +V FV+ DD
Sbjct: 213 SLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FVHGDD 271
Query: 220 INTRRIMEDLFDMDQLESAFGGN 242
++ D + L S FGG
Sbjct: 272 LSG---FYQEIDENILPSDFGGT 291
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 44 CSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPE---EIRWDEIANEAETGKIYRLN 100
+D+ + R LRA+++++ A ++LK KWRAE PE ++ I + G L
Sbjct: 47 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PEISADLHPRSIIGLLKAGYHGVLR 105
Query: 101 YVDKYGRAVLVMRPSCQNTK--STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNL 158
D G VL+ R + + K + R + E + + + + + D +G+
Sbjct: 106 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF 165
Query: 159 SH---ISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKV 212
SH I+ V ++ A VL D +P ++ L N P F ++++KPFL K + ++
Sbjct: 166 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 44 CSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPE---EIRWDEIANEAETGKIYRLN 100
+D+ + R LRA+++++ A ++LK KWRAE PE ++ I + G L
Sbjct: 31 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PEISADLHPRSIIGLLKAGYHGVLR 89
Query: 101 YVDKYGRAVLVMRPSCQNTK--STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNL 158
D G VL+ R + + K + R + E + + + + + D +G+
Sbjct: 90 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF 149
Query: 159 SH---ISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKV 212
SH I+ V ++ A VL D +P ++ L N P F ++ +KPFL K + ++
Sbjct: 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERI 206
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 19/213 (8%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEI-RWD--EIANEAETGKI--YRLN 100
D + R LRA++++++K+ ML++ +++R + + I W E+ + +G + Y L+
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 101 ----YVDKYG---RAVLVMRPSCQNTKSTK-GQIRYLVYCMENAILNLPPHQEQMVWLID 152
+ D G L+ S Q+ TK + L+ + L E + + D
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYD 154
Query: 153 FQGFNLSHI---SVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQ 209
+G L H+ +V+ E + +++YPE L + PK F + ++KPFL T+
Sbjct: 155 CEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTR 214
Query: 210 NKVKFVYSDDINTRRIMEDLFDMDQLESAFGGN 242
K+ + + N + ++ DQ+ +GG
Sbjct: 215 KKIMVLGA---NWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 19/213 (8%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEI-RWD--EIANEAETGKI--YRLN 100
D + R LRA++++++K+ ML++ +++R + + I W E+ + +G + Y L+
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 101 ----YVDKYG---RAVLVMRPSCQNTKSTK-GQIRYLVYCMENAILNLPPHQEQMVWLID 152
+ D G L+ S Q+ TK + L+ + L E + + D
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYD 154
Query: 153 FQGFNLSHI---SVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQ 209
+G L H+ +V+ E + +++YPE L + PK F + ++KPFL T+
Sbjct: 155 CEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTR 214
Query: 210 NKVKFVYSDDINTRRIMEDLFDMDQLESAFGGN 242
K+ + + N + ++ DQ+ +GG
Sbjct: 215 KKIMVLGA---NWKEVLLKHISPDQVPVEYGGT 244
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 19/213 (8%)
Query: 46 DASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEI-RWD--EIANEAETGKI--YRLN 100
D + R LRA++++++K+ L++ +++R + + I W E+ + +G Y L+
Sbjct: 35 DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGYDLD 94
Query: 101 ----YVDKYG---RAVLVMRPSCQNTKSTKG-QIRYLVYCMENAILNLPPHQEQMVWLID 152
+ D G L+ S Q+ TK + L+ + L E + + D
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECELLLQECAHQTTKLGRKVETITIIYD 154
Query: 153 FQGFNLSHI---SVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQ 209
+G L H+ +V+ E +++YPE L + PK F + ++KPFL T+
Sbjct: 155 CEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTR 214
Query: 210 NKVKFVYSDDINTRRIMEDLFDMDQLESAFGGN 242
K+ + + N + ++ DQ+ +GG
Sbjct: 215 KKIXVLGA---NWKEVLLKHISPDQVPVEYGGT 244
>pdb|1W0R|A Chain A, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0R|B Chain B, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|A Chain A, Solution Structure Of Trimeric Form Of Properdin By
X-Ray Solution Scattering And Analytical
Ultracentrifugation
pdb|1W0S|B Chain B, Solution Structure Of Trimeric Form Of Properdin By
X-Ray Solution Scattering And Analytical
Ultracentrifugation
pdb|1W0S|C Chain C, Solution Structure Of Trimeric Form Of Properdin By
X-Ray Solution Scattering And Analytical
Ultracentrifugation
Length = 442
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 42 IYCSDASIARHLRAQNWNVKKATKMLKETLKWR 74
+ CS+ S R+ R WN + + K+ TL+W+
Sbjct: 64 VTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQ 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,172,313
Number of Sequences: 62578
Number of extensions: 345489
Number of successful extensions: 765
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 15
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)