Query 019670
Match_columns 337
No_of_seqs 237 out of 1321
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 7.8E-50 2.7E-54 385.8 18.6 280 11-299 2-299 (403)
2 3hx3_A Retinaldehyde-binding p 100.0 5.1E-49 1.8E-53 368.1 20.9 236 18-258 54-306 (316)
3 1r5l_A Alpha-TTP, protein (alp 100.0 4.3E-49 1.5E-53 359.2 16.5 249 15-271 2-258 (262)
4 3q8g_A CRAL-TRIO domain-contai 100.0 3.6E-47 1.2E-51 355.8 20.7 229 11-246 29-283 (320)
5 1aua_A Phosphatidylinositol tr 100.0 2.8E-46 9.5E-51 346.8 20.9 232 9-246 18-268 (296)
6 3pg7_A Neurofibromin; SEC lipi 99.3 5.1E-12 1.8E-16 113.7 7.4 137 87-235 4-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 1E-10 3.4E-15 106.9 4.5 131 93-234 28-162 (290)
8 2dal_A Protein KIAA0794; FAS a 87.0 2.8 9.5E-05 28.3 6.9 47 11-67 5-51 (62)
9 1wgl_A TOLL-interacting protei 86.9 1.4 4.8E-05 29.6 5.3 39 23-69 10-48 (59)
10 2dam_A ETEA protein; KIAA0887, 85.9 3.5 0.00012 28.3 7.1 45 15-68 12-56 (67)
11 1ufz_A Hypothetical protein BA 84.9 1.9 6.4E-05 30.9 5.3 39 25-70 37-75 (83)
12 2dhy_A CUE domain-containing p 84.4 1.9 6.5E-05 29.7 5.1 42 21-70 17-58 (67)
13 2di0_A Activating signal coint 83.4 4.1 0.00014 28.3 6.4 46 16-69 7-52 (71)
14 2cp8_A NEXT to BRCA1 gene 1 pr 81.4 3.6 0.00012 27.0 5.2 28 42-69 20-47 (54)
15 1z96_A DNA-damage, UBA-domain 72.3 6 0.00021 23.6 4.2 23 45-67 17-39 (40)
16 2knz_A Ubiquilin-4; cytoplasm, 72.0 7.4 0.00025 25.2 4.8 28 42-69 22-49 (53)
17 1v92_A NSFL1 cofactor P47; 3-h 71.8 6.7 0.00023 24.3 4.5 37 22-67 5-41 (46)
18 2dzl_A Protein FAM100B; UBA-li 69.3 19 0.00067 24.4 6.7 47 11-67 6-53 (66)
19 2bwb_A Ubiquitin-like protein 69.0 4.9 0.00017 25.3 3.3 26 43-68 19-44 (46)
20 2dah_A Ubiquilin-3; UBA domain 66.9 6.8 0.00023 25.6 3.8 28 43-70 21-48 (54)
21 2dna_A Unnamed protein product 65.1 7.9 0.00027 26.6 3.9 29 42-70 30-58 (67)
22 1wr1_B Ubiquitin-like protein 64.8 6.1 0.00021 26.3 3.3 27 43-69 29-55 (58)
23 1oai_A Nuclear RNA export fact 63.5 29 0.001 22.9 6.9 45 17-71 3-47 (59)
24 1otr_A Protein CUE2; protein-p 61.9 9.1 0.00031 24.5 3.5 26 44-69 18-43 (49)
25 1vej_A Riken cDNA 4931431F19; 59.3 9.5 0.00032 26.7 3.6 27 43-69 41-67 (74)
26 3e21_A HFAF1, FAS-associated f 58.1 17 0.00056 22.8 4.2 36 22-66 5-41 (45)
27 2cwb_A Chimera of immunoglobul 56.8 13 0.00046 28.0 4.3 28 42-69 77-104 (108)
28 2jy5_A Ubiquilin-1; UBA, alter 55.8 11 0.00039 24.2 3.3 26 43-68 24-49 (52)
29 2jp7_A MRNA export factor MEX6 54.6 39 0.0013 22.2 5.8 43 17-69 2-44 (57)
30 2cp9_A EF-TS, EF-TSMT, elongat 44.3 45 0.0015 22.5 4.9 38 24-70 11-48 (64)
31 1ify_A HHR23A, UV excision rep 43.6 18 0.00063 22.8 2.8 26 44-69 20-45 (49)
32 1wji_A Tudor domain containing 40.1 35 0.0012 22.9 3.9 27 44-70 21-47 (63)
33 1q02_A Sequestosome 1; helical 39.7 24 0.00084 22.7 2.8 24 45-68 25-48 (52)
34 2g3q_A Protein YBL047C; endocy 38.4 29 0.001 21.0 3.1 25 44-68 16-40 (43)
35 1vg5_A RSGI RUH-014, rhomboid 35.9 30 0.001 24.1 3.1 26 44-69 41-66 (73)
36 3lay_A Zinc resistance-associa 35.5 28 0.00095 28.6 3.4 62 15-77 66-129 (175)
37 1veg_A NEDD8 ultimate buster-1 34.6 46 0.0016 23.7 3.9 27 44-70 41-67 (83)
38 1vdl_A Ubiquitin carboxyl-term 33.3 75 0.0026 22.1 4.6 40 22-69 24-63 (80)
39 1wj7_A Hypothetical protein (R 33.3 77 0.0026 23.6 5.1 26 44-69 52-77 (104)
40 2qsf_X RAD23, UV excision repa 30.1 73 0.0025 26.0 5.0 43 15-68 124-166 (171)
41 2d9s_A CBL E3 ubiquitin protei 30.0 74 0.0025 20.6 3.9 27 44-70 21-47 (53)
42 1p3q_Q VPS9P, vacuolar protein 29.5 31 0.0011 22.5 2.1 25 44-68 26-50 (54)
43 2dae_A KIAA0733 protein; mitog 28.4 93 0.0032 21.4 4.4 40 23-70 11-50 (75)
44 1dv0_A DNA repair protein HHR2 26.7 98 0.0033 19.2 4.1 24 44-67 16-39 (47)
45 2ahq_A Sigma-54, RNA polymeras 26.5 1.1E+02 0.0036 21.4 4.6 52 14-70 13-65 (76)
46 1wgn_A UBAP1, ubiquitin associ 26.3 77 0.0026 21.2 3.6 45 15-70 13-57 (63)
47 2dak_A Ubiquitin carboxyl-term 26.3 68 0.0023 21.2 3.5 26 45-70 22-47 (63)
48 2ka5_A Putative anti-sigma fac 26.0 1.3E+02 0.0043 22.4 5.6 51 147-201 53-104 (125)
49 2ooa_A E3 ubiquitin-protein li 25.7 99 0.0034 19.9 3.9 27 44-70 23-49 (52)
50 2lva_A Ubiquitin carboxyl-term 31.0 15 0.00052 28.2 0.0 42 20-69 16-57 (129)
51 1wiv_A UBP14, ubiquitin-specif 24.9 62 0.0021 22.3 3.2 25 45-69 42-66 (73)
52 1sbo_A Putative anti-sigma fac 23.4 1.5E+02 0.0053 20.8 5.5 85 105-201 11-96 (110)
53 3o39_A Periplasmic protein rel 23.3 1.7E+02 0.006 21.7 5.7 58 15-74 16-73 (108)
54 2oo3_A Protein involved in cat 22.9 34 0.0012 30.4 1.8 27 182-208 238-264 (283)
55 2kln_A Probable sulphate-trans 22.9 1.5E+02 0.0052 22.0 5.6 50 147-200 49-99 (130)
56 3itf_A Periplasmic adaptor pro 22.0 2.5E+02 0.0085 22.0 6.7 59 16-76 45-103 (145)
57 3sbx_A Putative uncharacterize 21.8 2E+02 0.0067 23.7 6.3 61 163-230 122-187 (189)
58 3ct6_A PTS-dependent dihydroxy 21.7 1.3E+02 0.0045 23.1 4.9 43 145-200 59-101 (131)
59 2q3l_A Uncharacterized protein 21.6 2.3E+02 0.0078 21.3 6.3 81 121-207 31-111 (126)
60 3llo_A Prestin; STAS domain, c 20.7 1.8E+02 0.006 22.0 5.6 51 147-201 65-116 (143)
61 4dgh_A Sulfate permease family 20.4 1.9E+02 0.0063 21.5 5.6 50 147-200 50-100 (130)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=7.8e-50 Score=385.82 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=233.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhccc-CCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCccchhhHH
Q 019670 11 NGYEKPLPSEEQQRKINEVRRLLGLLS-GRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDEIAN 89 (337)
Q Consensus 11 ~~~~~~lt~e~~~~~i~~lr~~l~~~~-~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~d~i~~~~v~~ 89 (337)
.|+.++|+ ++++++|++||+||.+.+ +++ ..+|.+|+|||||++||+++|.++|+++++||++++++.+......+
T Consensus 2 ~g~~~~l~-~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 78 (403)
T 1olm_A 2 SGRVGDLS-PRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPE 78 (403)
T ss_dssp CSBTTBCC-HHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCH
T ss_pred CCCccCCC-HHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHH
Confidence 47889999 889999999999999874 333 48999999999999999999999999999999999887764311111
Q ss_pred HHhc-CceEeccccCCCCCeEEEEccCCCCC------CChHHHHHHHHHHHHHHHHhCCC-------CcccEEEEEeCCC
Q 019670 90 EAET-GKIYRLNYVDKYGRAVLVMRPSCQNT------KSTKGQIRYLVYCMENAILNLPP-------HQEQMVWLIDFQG 155 (337)
Q Consensus 90 ~~~~-~~~~~~~~~Dk~GrpV~i~r~~~~~~------~~~~~~~r~~~~~~E~~~~~~~~-------~~~~~v~IiDl~g 155 (337)
.+.. ...+. +|+|++||||++++++++++ .+.++++|+.++++|.+++.+.. .+.|+++|+|++|
T Consensus 79 ~~~~~~~~~~-~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g 157 (403)
T 1olm_A 79 VIQQYLSGGM-CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEG 157 (403)
T ss_dssp HHHHHCCBEE-EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCcee-eccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCC
Confidence 1111 11222 46899999999999999875 37899999999999999886542 4689999999999
Q ss_pred CCCCCCC---HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCc
Q 019670 156 FNLSHIS---VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDM 232 (337)
Q Consensus 156 ~s~~~~~---~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~ 232 (337)
++++|++ ++.++.++.++|++||+||+++||||+|++|.++|+++||||+++|++||+|++++ +.+.|.++||+
T Consensus 158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~---~~~~L~~~I~~ 234 (403)
T 1olm_A 158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN---WKEVLLKHISP 234 (403)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTT---HHHHHTTTSCG
T ss_pred CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChh---HHHHHHhhcCh
Confidence 9999985 77899999999999999999999999999999999999999999999999999763 67899999999
Q ss_pred ccchhhcCCCCCCCCChHHHHHHhhhcCCCcccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 019670 233 DQLESAFGGNDRVGFNINKYAERMREDDKKMPSFWAMETTPSEASQPSLTMATSSDSPNLNSDSDTS 299 (337)
Q Consensus 233 ~~LP~e~GG~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (337)
++||++|||++++......|...+..++.+|.+||..+..... -...++|++|+...+++.++++
T Consensus 235 ~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~--~~~~~~V~~g~~~~v~~~v~~~ 299 (403)
T 1olm_A 235 DQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ--YEHSVQISRGSSHQVEYEILFP 299 (403)
T ss_dssp GGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCC--CSEEEEECTTCEEEEEEEECST
T ss_pred hhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccc--cceEEEEcCCCEEEEEEEEcCC
Confidence 9999999999998655555667788899999999987762211 1122568999999988888743
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.1e-49 Score=368.09 Aligned_cols=236 Identities=21% Similarity=0.330 Sum_probs=209.7
Q ss_pred CcHHHHHHHHHHHHHHhcccCCCC----------CCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCC--CCccch
Q 019670 18 PSEEQQRKINEVRRLLGLLSGRLS----------IYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKP--EEIRWD 85 (337)
Q Consensus 18 t~e~~~~~i~~lr~~l~~~~~~~~----------~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~--d~i~~~ 85 (337)
+|+.++++|++||+||.++|++.+ ...+|.+|+||||||+||+++|.++|++|++||+.++. +.+..+
T Consensus 54 ~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~ 133 (316)
T 3hx3_A 54 REETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPE 133 (316)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHH
Confidence 457788999999999999988631 34799999999999999999999999999999999852 445666
Q ss_pred hhHHHHhcCceEeccccCCCCCeEEEEccCCCCCC--ChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCC--
Q 019670 86 EIANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTK--STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHI-- 161 (337)
Q Consensus 86 ~v~~~~~~~~~~~~~~~Dk~GrpV~i~r~~~~~~~--~~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~-- 161 (337)
++...+..|..++++|+|++||||++++++++++. +.++++++.++++|.++...+.++.|+++|+|++|++++|+
T Consensus 134 ~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~ 213 (316)
T 3hx3_A 134 AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 213 (316)
T ss_dssp HHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhcc
Confidence 77778889998888889999999999999999875 57899999999999988765556789999999999999885
Q ss_pred -CHHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCcccchhhcC
Q 019670 162 -SVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFG 240 (337)
Q Consensus 162 -~~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~LP~e~G 240 (337)
++..++.++.++|++||+|++++||||+|++|..+|+++||||+++|++||+|++++ .+.|.++||+++||++||
T Consensus 214 ~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~----~~~L~~~I~~~~LP~eyG 289 (316)
T 3hx3_A 214 LRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD----LSGFYQEIDENILPSDFG 289 (316)
T ss_dssp CCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC----CHHHHHHSCGGGSBGGGT
T ss_pred CChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC----HHHHHhhCCHhhCcHhhC
Confidence 488999999999999999999999999999999999999999999999999999764 468999999999999999
Q ss_pred CCCCCCCChHHHHHHhhh
Q 019670 241 GNDRVGFNINKYAERMRE 258 (337)
Q Consensus 241 G~~~~~~d~~~~~~~~~~ 258 (337)
|++++ +|++.|++.+..
T Consensus 290 G~~~~-~d~~~~~~~l~~ 306 (316)
T 3hx3_A 290 GTLPK-YDGKAVAEQLFG 306 (316)
T ss_dssp SSBCC-CCHHHHHHHHC-
T ss_pred CCCCC-cChhHHHHHHcC
Confidence 99986 789999988765
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=4.3e-49 Score=359.16 Aligned_cols=249 Identities=21% Similarity=0.308 Sum_probs=208.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccC-CCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCC--CCccchhhHHHH
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSG-RLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKP--EEIRWDEIANEA 91 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~-~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~--d~i~~~~v~~~~ 91 (337)
.+|| +.++++|++||+++++.+. ..+..++|.+|+|||||++||+++|.++|+++++||+.++. ..+..+.+...+
T Consensus 2 ~~ls-~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 2 SHMS-PLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLL 80 (262)
T ss_dssp --------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHH
T ss_pred CCcc-HHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHH
Confidence 4788 7788999999999998753 33456899999999999999999999999999999999841 334555677778
Q ss_pred hcCceEeccccCCCCCeEEEEccCCCCCC--ChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCC---CHHHH
Q 019670 92 ETGKIYRLNYVDKYGRAVLVMRPSCQNTK--STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHI---SVKVT 166 (337)
Q Consensus 92 ~~~~~~~~~~~Dk~GrpV~i~r~~~~~~~--~~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~---~~~~~ 166 (337)
..|...+++|+|++||||++++++++++. +..+++++.++++|.++...+.+..|+++|+|++|++++|+ +++.+
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~ 160 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVA 160 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHH
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHH
Confidence 88888778889999999999999999876 56789999999999877654455689999999999999986 48999
Q ss_pred HHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhccCCcccchhhcCCCCCCC
Q 019670 167 RETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQLESAFGGNDRVG 246 (337)
Q Consensus 167 k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~LP~e~GG~~~~~ 246 (337)
+.++.++|++||+|++++||||+|++|..+|+++||||+++|++||+|++++ +.+.|.++|| ++||++|||++++.
T Consensus 161 k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~---~~~~L~~~i~-~~LP~~yGG~~~~~ 236 (262)
T 1r5l_A 161 KKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN---YKQSLLQHFP-DILPLEYGGEEFSM 236 (262)
T ss_dssp HHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS---CHHHHHHHST-TTSCGGGTCSSCCH
T ss_pred HHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCC---cHHHHHHHhh-hhCcHhhCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999764 5789999999 99999999999887
Q ss_pred CChHHHHHHhhhcCCCcccccccCC
Q 019670 247 FNINKYAERMREDDKKMPSFWAMET 271 (337)
Q Consensus 247 ~d~~~~~~~~~~~~~~~~~~~~~~~ 271 (337)
.++.++|...... .++|+..-+
T Consensus 237 ~~~~~~w~~~l~~---~~~~~~~~~ 258 (262)
T 1r5l_A 237 EDICQEWTNFIMK---SEDYLSSIS 258 (262)
T ss_dssp HHHHHHHHHHHHH---THHHHHHTC
T ss_pred HHHHHHHHHHHHH---HHHHHHHhc
Confidence 7776677655443 444555433
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=3.6e-47 Score=355.83 Aligned_cols=229 Identities=25% Similarity=0.347 Sum_probs=197.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCccchh-h--
Q 019670 11 NGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDE-I-- 87 (337)
Q Consensus 11 ~~~~~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~d~i~~~~-v-- 87 (337)
.|+.+.|| ++|+++|++||+||++.+. +..+||.+|+||||||+||+++|.++|+++++||++++++.+..+. .
T Consensus 29 ~g~~~~lt-~~q~~~l~~lR~~l~~~~~--~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~ 105 (320)
T 3q8g_A 29 PGTPGNLT-KEQEEALLQFRSILLEKNY--KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNK 105 (320)
T ss_dssp TTSTTCCC-HHHHHHHHHHHHHHHHTTC--CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTH
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccccc
Confidence 68999999 8889999999999999874 3468999999999999999999999999999999999888764221 1
Q ss_pred ------HHHHh-cCceEeccccCCCCCeEEEEccCCCCCC------ChHHHHHHHHHHHHHHHHh--------CCCCccc
Q 019670 88 ------ANEAE-TGKIYRLNYVDKYGRAVLVMRPSCQNTK------STKGQIRYLVYCMENAILN--------LPPHQEQ 146 (337)
Q Consensus 88 ------~~~~~-~~~~~~~~~~Dk~GrpV~i~r~~~~~~~------~~~~~~r~~~~~~E~~~~~--------~~~~~~~ 146 (337)
...+. .+..+ ++|+|++||||+|+++|++++. +.+++++++++.+|.++.. ....+++
T Consensus 106 ~~~~~e~~~~~~~~~~~-~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~ 184 (320)
T 3q8g_A 106 EAEDKERIKLAKMYPQY-YHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIET 184 (320)
T ss_dssp HHHHHHHHHHHTTSCEE-EEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCC
T ss_pred ccchhHHHHHHHhCCce-ecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcce
Confidence 11222 33334 3468999999999999998864 5688999999999987642 1223578
Q ss_pred EEEEEeCCCCCCCCCC--HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHH
Q 019670 147 MVWLIDFQGFNLSHIS--VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRR 224 (337)
Q Consensus 147 ~v~IiDl~g~s~~~~~--~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~ 224 (337)
+++|+|++|+++++++ ++.++.++.++|++||+||+++||||+|++|..+|+++||||+++|++||+|++++ +.+
T Consensus 185 ~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~---~~~ 261 (320)
T 3q8g_A 185 SCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS---YKK 261 (320)
T ss_dssp EEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTT---HHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCC---cHH
Confidence 8999999999999986 78899999999999999999999999999999999999999999999999999764 578
Q ss_pred HHhccCCcccchhhcCCCCCCC
Q 019670 225 IMEDLFDMDQLESAFGGNDRVG 246 (337)
Q Consensus 225 ~L~~~i~~~~LP~e~GG~~~~~ 246 (337)
.|.++||+++||++|||++++.
T Consensus 262 ~L~~~i~~~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 262 ELLKQIPIENLPVKYGGTSVLH 283 (320)
T ss_dssp HHHHHSCGGGSBGGGTSCBCCS
T ss_pred HHHhhCChhhCChhhCCCCCCC
Confidence 9999999999999999999884
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.8e-46 Score=346.78 Aligned_cols=232 Identities=25% Similarity=0.339 Sum_probs=198.3
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCccchh--
Q 019670 9 TTNGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEYKPEEIRWDE-- 86 (337)
Q Consensus 9 ~~~~~~~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~~~d~i~~~~-- 86 (337)
...|+.+.|+ ++++++|++||+||++.+. +..++|.+|+|||||++||+++|.++|+++++||+.++++.+....
T Consensus 18 ~~~~~~~~l~-~~q~~~l~~lr~~l~~~~~--~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~ 94 (296)
T 1aua_A 18 ALPGTPGNLD-SAQEKALAELRKLLEDAGF--IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94 (296)
T ss_dssp SCTTSTTTCC-TTHHHHHHHHHHHHHHTTC--CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCC
T ss_pred cCCCCCCCCC-HHHHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhcccc
Confidence 4578888998 6778999999999998763 4568999999999999999999999999999999999887764221
Q ss_pred -hHHHHhcCceEeccccCCCCCeEEEEccCCCCC------CChHHHHHHHHHHHHHHHHhC--------CCCcccEEEEE
Q 019670 87 -IANEAETGKIYRLNYVDKYGRAVLVMRPSCQNT------KSTKGQIRYLVYCMENAILNL--------PPHQEQMVWLI 151 (337)
Q Consensus 87 -v~~~~~~~~~~~~~~~Dk~GrpV~i~r~~~~~~------~~~~~~~r~~~~~~E~~~~~~--------~~~~~~~v~Ii 151 (337)
..+.+.......++|+|++||||+|+++|++++ .+.+++++++++.+|.++..+ ...++++++|+
T Consensus 95 ~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~ 174 (296)
T 1aua_A 95 DEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIM 174 (296)
T ss_dssp TTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEE
T ss_pred CcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEE
Confidence 112222222222446899999999999999864 467899999999999876532 23468999999
Q ss_pred eCCCCCCCCCC--HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhcccCCHhhhcceEEEcCCCcchHHHHhcc
Q 019670 152 DFQGFNLSHIS--VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVKPFLELKTQNKVKFVYSDDINTRRIMEDL 229 (337)
Q Consensus 152 Dl~g~s~~~~~--~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~ 229 (337)
|++|++++|++ ++.++.++.++|++||+||+++||||+|++|.++|+++||||+++|++||+|++++ +.+.|.++
T Consensus 175 D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~---~~~~L~~~ 251 (296)
T 1aua_A 175 DLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKELLKQ 251 (296)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSC---CHHHHTTT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcc---cHHHHHhh
Confidence 99999999987 78999999999999999999999999999999999999999999999999999764 57889999
Q ss_pred CCcccchhhcCCCCCCC
Q 019670 230 FDMDQLESAFGGNDRVG 246 (337)
Q Consensus 230 i~~~~LP~e~GG~~~~~ 246 (337)
||+++||++|||++++.
T Consensus 252 i~~~~LP~~yGG~~~~~ 268 (296)
T 1aua_A 252 IPAENLPVKFGGKSEVD 268 (296)
T ss_dssp SCSSSSBGGGTSCBCCC
T ss_pred CCHhhCcHHhCCCCCCC
Confidence 99999999999999875
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.27 E-value=5.1e-12 Score=113.75 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=105.4
Q ss_pred hHHHHhcCceEeccccCCCCCeEEEEccCCCCCCC--hHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCC-H
Q 019670 87 IANEAETGKIYRLNYVDKYGRAVLVMRPSCQNTKS--TKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHIS-V 163 (337)
Q Consensus 87 v~~~~~~~~~~~~~~~Dk~GrpV~i~r~~~~~~~~--~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~~-~ 163 (337)
+.+.-+.+.+|.. |.|++||||+++.+++++... .+.++.+.+..++..+ ...+.+|+|+.|++..+.+ .
T Consensus 4 ~~~i~~~~ify~~-G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p~~ 76 (256)
T 3pg7_A 4 FKALKTLSIFYQA-GTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKT 76 (256)
T ss_dssp TTTHHHHTSEEEE-EECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCH
T ss_pred hhHHHHcCCEEEc-CcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCCcH
Confidence 3334445555544 589999999999999987643 3444444444444221 2579999999999987665 8
Q ss_pred HHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHH-hcccCCHhhhcceEEEcCCCcchHHHHhccCCcccc
Q 019670 164 KVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTV-VKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQL 235 (337)
Q Consensus 164 ~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~l-vkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~L 235 (337)
++++.+..++...|...++++||+|++++|...|+. .++|.+.+..+|+.++.+ ..+|.++|+.++|
T Consensus 77 ~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s-----l~eL~~~i~~~~L 144 (256)
T 3pg7_A 77 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS-----TTGGGGTSCGGGC
T ss_pred HHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC-----HHHHHhhcCHHHc
Confidence 999999999999999999999999999999977665 466777788899999966 4679999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=106.89 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCceEeccccCCCCCeEEEEccCCCCCCC--hHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCC-HHHHHHH
Q 019670 93 TGKIYRLNYVDKYGRAVLVMRPSCQNTKS--TKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHIS-VKVTRET 169 (337)
Q Consensus 93 ~~~~~~~~~~Dk~GrpV~i~r~~~~~~~~--~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~~-~~~~k~~ 169 (337)
.+.++..+|.|++|+||+++.+++++... .+.++-+.+..++.. - ...+++|+|+.|++..+-+ .++++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~----~--~~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY----Y--AKPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT----T--TSCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHh----c--CCCeEEEEEcCCCCccCCChHHHHHHH
Confidence 44556666789999999999999987543 333444444433322 1 2589999999999987655 9999999
Q ss_pred HHHHhhhhhcccceEEEEcCCcchHHHH-HHhcccCCHhhhcceEEEcCCCcchHHHHhccCCccc
Q 019670 170 AHVLQDHYPERLGLAILYNPPKFFEPFW-TVVKPFLELKTQNKVKFVYSDDINTRRIMEDLFDMDQ 234 (337)
Q Consensus 170 ~~~lq~~YPerl~~i~ivN~P~~~~~~~-~lvkpfL~~kt~~KI~~~~~~~~~~~~~L~~~i~~~~ 234 (337)
..++...|+.+++++|++|++.+|...+ ...++|.+.+..+|+.++.+- ..|..++++++
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~-----~~L~~~i~~~~ 162 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP-----GKLAEHIEHEQ 162 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS-----CC---------
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH-----HHHHhhCCHHH
Confidence 9999999999999999999999998755 577888888899999888553 33777777664
No 8
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.96 E-value=2.8 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHH
Q 019670 11 NGYEKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKML 67 (337)
Q Consensus 11 ~~~~~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l 67 (337)
......++ ..+.+.|.++...-+ ++......||..++||++.|+..+
T Consensus 5 ~~~~~~~s-~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 5 SSGGSAAS-SALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCCCSSC-HHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred ccchhhcC-ccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33445676 667778888776543 357889999999999999998765
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=86.85 E-value=1.4 Score=29.58 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 23 QRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 23 ~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
++.++.|++.+-. .+...|..-|+++++|++.|...|..
T Consensus 10 ee~l~~L~emFP~--------ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPN--------MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSS--------SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--------CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3567888877633 58899999999999999999999865
No 10
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.86 E-value=3.5 Score=28.29 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
..|+ .++++.|.++...-+- .+......||..++||++.|+..+-
T Consensus 12 ~~Ls-~~~~e~i~qF~~ITg~--------~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLT-QEQTEKLLQFQDLTGI--------ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCC-HHHHHHHHHHHHHHCC--------SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcC-hhHHHHHHHHHHHhCC--------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4788 5677888888887752 2567889999999999999987753
No 11
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=84.86 E-value=1.9 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 25 KINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 25 ~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
+++++|..|+.. +.|..|.+-...++||+++|+..+-+-
T Consensus 37 CLd~iR~VlGds-------V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 37 CLDHMREVLGDA-------VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHTTTT-------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccc-------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 456778777752 678999999999999999999987653
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.39 E-value=1.9 Score=29.73 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 21 EQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 21 ~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
+.++.+++|++.+-. .+...|..-|+++++|++.|.+.|...
T Consensus 17 ~~~~~v~~L~~MFP~--------lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPN--------MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSS--------SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC--------CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456778888887643 578899999999999999999987653
No 13
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=83.43 E-value=4.1 Score=28.33 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 16 PLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 16 ~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
.++..+-+..|.++++.+-. +.+.++.+.|..++.|+|.+...|-.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPd--------LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPD--------LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCS--------SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHccc--------CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 34556777888888888743 68899999999999999999988765
No 14
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.36 E-value=3.6 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 42 IYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 42 ~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
.|++...=.+-|+.+++|+++|+..|.+
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5788899999999999999999988765
No 15
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=72.30 E-value=6 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.2
Q ss_pred CHHHHHHHhhccCCCHHHHHHHH
Q 019670 45 SDASIARHLRAQNWNVKKATKML 67 (337)
Q Consensus 45 ~D~~LlRFLra~~~dvekA~~~l 67 (337)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667889999999999998765
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=72.00 E-value=7.4 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 42 IYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 42 ~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
+|.+....++-|+++++|+++|++.|..
T Consensus 22 GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 22 GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3457888899999999999999998764
No 17
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=71.77 E-value=6.7 Score=24.32 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHH
Q 019670 22 QQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKML 67 (337)
Q Consensus 22 ~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l 67 (337)
+++.|.++...-+ ++......||..++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG---------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC---------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556666665443 367889999999999999998765
No 18
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.33 E-value=19 Score=24.41 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCCCCCCCcH-HHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHH
Q 019670 11 NGYEKPLPSE-EQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKML 67 (337)
Q Consensus 11 ~~~~~~lt~e-~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l 67 (337)
.+.-...+ + .+++.|.++-..-+ +++.....||.+++||++.|+..+
T Consensus 6 ~~~~~~m~-~~~~q~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 6 SGMSVNMD-ELRHQVMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCSCCCH-HHHHHHHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhhhHHhh-cCccHHHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444555 3 33366777765542 467889999999999999998775
No 19
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=68.97 E-value=4.9 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 43 YCSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 43 ~~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
+.++...++-|+++++|+++|++.|-
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45677789999999999999998774
No 20
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.86 E-value=6.8 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 43 YCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 43 ~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
|.++...++-|+++++|+++|++.|-..
T Consensus 21 F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 21 FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566677999999999999999988654
No 21
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.05 E-value=7.9 Score=26.56 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 42 IYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 42 ~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.|.++...++-|+++++|+++|++.|..+
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35677788999999999999999988653
No 22
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.83 E-value=6.1 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 43 YCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 43 ~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
+.++...++-|+++++|+++|++.|-.
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456778899999999999999998864
No 23
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=63.49 E-value=29 Score=22.94 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHH
Q 019670 17 LPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETL 71 (337)
Q Consensus 17 lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l 71 (337)
|+ +++++.|..+.+.-+ ..-.+-.++|..++||.++|.+.+....
T Consensus 3 ls-~~q~~mv~~~s~~Tg---------mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LS-PEQQEMLQAFSTQSG---------MNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56 567777777665443 3567899999999999999999877643
No 24
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=61.89 E-value=9.1 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
++-..+.+-|+.+++|+++|...|-+
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57788999999999999999999865
No 25
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.34 E-value=9.5 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 43 YCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 43 ~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
|.++...++-|++.++|+++|++.|..
T Consensus 41 F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 41 FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456778899999999999999998754
No 26
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=58.15 E-value=17 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCH-HHHHHHhhccCCCHHHHHHH
Q 019670 22 QQRKINEVRRLLGLLSGRLSIYCSD-ASIARHLRAQNWNVKKATKM 66 (337)
Q Consensus 22 ~~~~i~~lr~~l~~~~~~~~~~~~D-~~LlRFLra~~~dvekA~~~ 66 (337)
+.+.|.++...-+ .+| .....||.+++||++.|+..
T Consensus 5 ~de~ia~F~~iTG---------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG---------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4566777776544 244 67888999999999999753
No 27
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=56.78 E-value=13 Score=27.96 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 42 IYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 42 ~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
++.++...++-|+++++|+++|++.|..
T Consensus 77 GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 77 GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456778999999999999999998864
No 28
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=55.80 E-value=11 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 43 YCSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 43 ~~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
|.+....++-|+++++|+++|++.|.
T Consensus 24 F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 24 FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45778889999999999999998774
No 29
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=54.57 E-value=39 Score=22.21 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 17 LPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 17 lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
|+ +.+++.|.+|...-+ ..-.+-.++|..++||.++|...+..
T Consensus 2 l~-~~q~~mv~~~s~~T~---------Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 2 LN-PVQLELLNKLHLETK---------LNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CC-HHHHHHHHHHHHHHC---------SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55 556666666655432 45678999999999999999999877
No 30
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=44.26 E-value=45 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 24 RKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 24 ~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
+.|.+||+..+- .-...-.-|..+++|+++|...|++-
T Consensus 11 ~~Vk~LRe~TGa---------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGY---------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCC---------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 568999988764 22345678999999999999999864
No 31
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.61 E-value=18 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
.+.....+-|+++++|+++|++.|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46788899999999999999987754
No 32
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.13 E-value=35 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.+.....+-|+++++|+++|+.-|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 355667889999999999999877654
No 33
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=39.67 E-value=24 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CHHHHHHHhhccCCCHHHHHHHHH
Q 019670 45 SDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 45 ~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
.-.+|-|.|.+.++|+.+|++.|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 446899999999999999998874
No 34
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.37 E-value=29 Score=20.98 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
.+.....+-|+++++|++.|..-|-
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3556778899999999999988764
No 35
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=35.92 E-value=30 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
.+.....+-|+.+++|+++|++.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46778888999999999999987754
No 36
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.54 E-value=28 Score=28.61 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccC-CC-CCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHc
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSG-RL-SIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAEY 77 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~-~~-~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~~ 77 (337)
-.|| ++|++.+.+|++...+.-. +. .......-|-..+.+-+||.+++.+..++.-..|.+.
T Consensus 66 LnLT-~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 66 SPLT-TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp --CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4699 7788999999877654311 10 0011234566677789999999999998888888766
No 37
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.56 E-value=46 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.+.....+-|+++++|+++|++.|-.+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467788899999999999999988765
No 38
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.33 E-value=75 Score=22.05 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 22 QQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 22 ~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
.+-.|++||+.-+- .|-.+|.--|.+.+.|+..|+..|..
T Consensus 24 ~q~lLnQLrEITGi--------qD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREITGI--------NDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHSCC--------CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--------CcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 34578888887654 36678999999999999999988753
No 39
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.31 E-value=77 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=18.7
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
++......-|..|+||+++|+..|..
T Consensus 52 ~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 52 KNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45666777788888888888777654
No 40
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=30.06 E-value=73 Score=25.96 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
-.+| ++++++|+.|.+. . .+....++-|.+|++|++.|...|-
T Consensus 124 i~~t-pee~eaI~rL~~m---------G-F~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 124 VDYT-PEDDQAISRLCEL---------G-FERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCC-HHHHHHHHHHHTT---------T-CCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCC-ccHHHHHHHHHHc---------C-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4778 4556777665532 1 4667788899999999999988764
No 41
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.01 E-value=74 Score=20.56 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.+.....|-|...++|++.|...|+.+
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 467788999999999999999998865
No 42
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=29.49 E-value=31 Score=22.48 Aligned_cols=25 Identities=12% Similarity=-0.022 Sum_probs=18.0
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLK 68 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~ 68 (337)
.|...+-.-|++++++++.|+..|-
T Consensus 26 lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 26 MDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp SCHHHHHHHHHHSCC--CGGGC---
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6888999999999999998887664
No 43
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.39 E-value=93 Score=21.41 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 23 QRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 23 ~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.+.+.+||+.+-.. -|..+-.+++.++.|.+.+..+|.+-
T Consensus 11 ~qvfheLkQrFPEv--------Pd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPEV--------PEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSSS--------CHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccC--------cHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 56788888888653 46899999999999999999998764
No 44
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=26.72 E-value=98 Score=19.19 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKML 67 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l 67 (337)
.+....++-|.+|++|++.|..-|
T Consensus 16 F~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 16 FPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp CCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 567778889999999999998765
No 45
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=26.50 E-value=1.1e+02 Score=21.36 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHH-HHHHHHHH
Q 019670 14 EKPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKK-ATKMLKET 70 (337)
Q Consensus 14 ~~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvek-A~~~l~~~ 70 (337)
++..+.+ +--..++++|....... .++|.-|...|...+.++.+ ++.++++.
T Consensus 13 g~~~S~~---~Ik~~Ik~lI~~Ed~~k--PlSD~~I~~~L~~~Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 13 AEGLTQG---ELMKLIKEIVENEDKRK--PYSDQEIANILKEKGFKVARRTVAKYREM 65 (76)
T ss_dssp CCSCCHH---HHHHHHHHHGGGCCSSS--CCCHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred CccccHH---HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 4456633 34556777887764433 38999999999999888754 55554443
No 46
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.33 E-value=77 Score=21.20 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
..|+ ..++++|+.|-.. -.++....+-|++++.|+++|++=|-.+
T Consensus 13 ~~ls-~se~e~V~~LvsM----------GFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 13 QMLS-PSERQCVETVVNM----------GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HTCC-HHHHHHHHHHHHH----------HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhC-cchHHHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3566 3445666655421 1477889999999999999998866443
No 47
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.31 E-value=68 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.3
Q ss_pred CHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 45 SDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 45 ~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
+.....+-|+++++|++.|++-|-.+
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45677888999999999999887665
No 48
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=25.99 E-value=1.3e+02 Score=22.42 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred EEEEEeCCCCCCCCCC-HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhc
Q 019670 147 MVWLIDFQGFNLSHIS-VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVK 201 (337)
Q Consensus 147 ~v~IiDl~g~s~~~~~-~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvk 201 (337)
-.+|+|+++++.-..+ +..+..+...++. +=..+.++|++.-+.-++.+..
T Consensus 53 ~~vvlDls~V~~iDSsGl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 53 NKIFLVLSDVESIDSFSLGVIVNILKSISS----SGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp CEEEEECTTCSCCCHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCCEEcHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHcC
Confidence 3589999998865544 5555555555443 3468899999988877777654
No 49
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=25.71 E-value=99 Score=19.87 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCHHHHHHHhhccCCCHHHHHHHHHHH
Q 019670 44 CSDASIARHLRAQNWNVKKATKMLKET 70 (337)
Q Consensus 44 ~~D~~LlRFLra~~~dvekA~~~l~~~ 70 (337)
.+....++-|+..++|++.|...|..+
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 577889999999999999999988765
No 50
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.96 E-value=15 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 20 EEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 20 e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
...+-.|++||+.-+-. |-.+|.--|.++++|+.+|+.+|..
T Consensus 16 ~~~Q~lLNQLrEITGIq--------D~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 16 FQGQMLLNQLREITGIQ--------DPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 45666899999887753 3467888999999999999998865
No 51
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.91 E-value=62 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.9
Q ss_pred CHHHHHHHhhccCCCHHHHHHHHHH
Q 019670 45 SDASIARHLRAQNWNVKKATKMLKE 69 (337)
Q Consensus 45 ~D~~LlRFLra~~~dvekA~~~l~~ 69 (337)
+.....+-|+++++|+++|++-|-.
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5567788889999999999887654
No 52
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=23.40 E-value=1.5e+02 Score=20.81 Aligned_cols=85 Identities=8% Similarity=-0.038 Sum_probs=46.9
Q ss_pred CCCeEEEEccCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCC-HHHHHHHHHHHhhhhhcccce
Q 019670 105 YGRAVLVMRPSCQNTKSTKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHIS-VKVTRETAHVLQDHYPERLGL 183 (337)
Q Consensus 105 ~GrpV~i~r~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~~-~~~~k~~~~~lq~~YPerl~~ 183 (337)
.|..+++.-.|.++..+...+...+. ..+... ..-.+|+|+++++.-... +..+..+...++ .+=..
T Consensus 11 ~~~~~vv~l~G~l~~~~~~~l~~~l~----~~~~~~----~~~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~ 78 (110)
T 1sbo_A 11 QDDKAIVRVQGDIDAYNSSELKEQLR----NFISTT----SKKKIVLDLSSVSYMDSAGLGTLVVILKDAK----INGKE 78 (110)
T ss_dssp CSSEEEEEEESCBSTTTTTHHHHHHH----THHHHC----SCSEEEEECTTCCCBCHHHHHHHHHHHHHHH----HTTCE
T ss_pred eCCEEEEEEeeEEccccHHHHHHHHH----HHHhcC----CCcEEEEECCCCcEEccHHHHHHHHHHHHHH----HcCCE
Confidence 34444444467776665544433321 112111 102479999998754433 555555544444 23467
Q ss_pred EEEEcCCcchHHHHHHhc
Q 019670 184 AILYNPPKFFEPFWTVVK 201 (337)
Q Consensus 184 i~ivN~P~~~~~~~~lvk 201 (337)
+.++|++.-+..++.+..
T Consensus 79 l~l~~~~~~v~~~l~~~g 96 (110)
T 1sbo_A 79 FILSSLKESISRILKLTH 96 (110)
T ss_dssp EEEESCCHHHHHHHHHTT
T ss_pred EEEEeCCHHHHHHHHHhC
Confidence 889999887776666543
No 53
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=23.28 E-value=1.7e+02 Score=21.67 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 019670 15 KPLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWR 74 (337)
Q Consensus 15 ~~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR 74 (337)
-.|| +++++.|..|++.-...-.. +.......+...+.+-+||..++...+.....-.
T Consensus 16 L~LT-d~Qk~qir~L~~~~r~~~~~-~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~ 73 (108)
T 3o39_A 16 LNLT-DAQKQQIREIMKGQRDQMKR-PPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQR 73 (108)
T ss_dssp SCCC-HHHHHHHHHHHHTTTTSCCC-CCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3789 88989999998887664221 1111234577788899999888777776544433
No 54
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=22.94 E-value=34 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.093 Sum_probs=21.3
Q ss_pred ceEEEEcCCcchHHHHHHhcccCCHhh
Q 019670 182 GLAILYNPPKFFEPFWTVVKPFLELKT 208 (337)
Q Consensus 182 ~~i~ivN~P~~~~~~~~lvkpfL~~kt 208 (337)
..++|||+||-+.-..+-+.|+|.+..
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 579999999999888877777665543
No 55
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=22.86 E-value=1.5e+02 Score=22.01 Aligned_cols=50 Identities=4% Similarity=-0.063 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCCCCCC-HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHh
Q 019670 147 MVWLIDFQGFNLSHIS-VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVV 200 (337)
Q Consensus 147 ~v~IiDl~g~s~~~~~-~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lv 200 (337)
-.+|+||++++.-..+ +..+..+.+.++. +=..++++|++.-+.-++...
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 99 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELLR----RGIVFAMARVKQDLRESLRAA 99 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHHT----TTEEEEEECCSSHHHHHHHHC
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHHHHHc
Confidence 4689999999875554 6666666666553 446788999988776666654
No 56
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=22.04 E-value=2.5e+02 Score=22.00 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 019670 16 PLPSEEQQRKINEVRRLLGLLSGRLSIYCSDASIARHLRAQNWNVKKATKMLKETLKWRAE 76 (337)
Q Consensus 16 ~lt~e~~~~~i~~lr~~l~~~~~~~~~~~~D~~LlRFLra~~~dvekA~~~l~~~l~wR~~ 76 (337)
.|| +++++.|..|++.-...-.. .......-+...+.+-+||..++...+.....-+..
T Consensus 45 ~LT-deQkqqir~L~~~~r~~~~~-~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 45 SLT-EHQRQQMRDLMQQARHEQPP-VNVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHSCC-CCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 678 88999999998877654221 111123457778889999988887777665554443
No 57
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=21.81 E-value=2e+02 Score=23.69 Aligned_cols=61 Identities=5% Similarity=-0.069 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhc-----ccCCHhhhcceEEEcCCCcchHHHHhccC
Q 019670 163 VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVK-----PFLELKTQNKVKFVYSDDINTRRIMEDLF 230 (337)
Q Consensus 163 ~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvk-----pfL~~kt~~KI~~~~~~~~~~~~~L~~~i 230 (337)
++.+.+++...|-.+- -+.|+++|..-+.+.++.++. -|++++.++.+.+..+ .+++.+++
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~ee~~~~l 187 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN-----LDDALQAC 187 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS-----HHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC-----HHHHHHHh
Confidence 4555555555565442 368999999888887776553 4899999999988743 45555544
No 58
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=21.73 E-value=1.3e+02 Score=23.07 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=25.1
Q ss_pred ccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHh
Q 019670 145 EQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVV 200 (337)
Q Consensus 145 ~~~v~IiDl~g~s~~~~~~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lv 200 (337)
.|++++.|+ |-+..+ ..+.+.. .. .++.|+|.|.+...+...+
T Consensus 59 dgVlvltDL-Ggsp~N-------~~~al~~-~~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMN-------LDLVSEM-TD----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESS-GGGHHH-------HHHHHHT-CS----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHH-------HHHHHHh-cC----CCEEEEEhhHHHHHHHHHH
Confidence 699999999 533211 1111111 11 3788889999866665443
No 59
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=21.57 E-value=2.3e+02 Score=21.27 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHh
Q 019670 121 STKGQIRYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVV 200 (337)
Q Consensus 121 ~~~~~~r~~~~~~E~~~~~~~~~~~~~v~IiDl~g~s~~~~~~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lv 200 (337)
+.+++.. +.-.+|..+..-. ...+.+++|++.+ .-.++..+..-++.--.| -..+.++=||-.+.|.+.+.+++
T Consensus 31 t~~d~~~-l~~~l~~~l~~~~--~~~i~ll~~~~~f--~G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~~ 104 (126)
T 2q3l_A 31 THEDYEQ-MTPLLESALAGIK--TPEIVALIDITEL--DGLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRVA 104 (126)
T ss_dssp CHHHHHH-HHHHHHHHTTTCC--SSCEEEEEEEEEE--EEECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHHhCC--CceEEEEEEecCC--CCCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHHH
Confidence 4455554 5556666554321 1125666665432 122233333333322233 37889999999999999999999
Q ss_pred cccCCHh
Q 019670 201 KPFLELK 207 (337)
Q Consensus 201 kpfL~~k 207 (337)
.+|++..
T Consensus 105 ~~~~~~e 111 (126)
T 2q3l_A 105 NWFTPGE 111 (126)
T ss_dssp HHHCSSE
T ss_pred hhccCCc
Confidence 9997654
No 60
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.69 E-value=1.8e+02 Score=22.01 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCCCCC-HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHhc
Q 019670 147 MVWLIDFQGFNLSHIS-VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVVK 201 (337)
Q Consensus 147 ~v~IiDl~g~s~~~~~-~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lvk 201 (337)
-.+|+||++++.-..+ +..+..+...++ .+=..++++|++.-+.-++....
T Consensus 65 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 116 (143)
T 3llo_A 65 HTVILDFTQVNFMDSVGVKTLAGIVKEYG----DVGIYVYLAGCSAQVVNDLTSNR 116 (143)
T ss_dssp SEEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHHTT
T ss_pred eEEEEECCCCccccHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHhCC
Confidence 4699999997754433 555554444443 45678999999877766666543
No 61
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=20.42 E-value=1.9e+02 Score=21.51 Aligned_cols=50 Identities=6% Similarity=0.076 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCCCCC-HHHHHHHHHHHhhhhhcccceEEEEcCCcchHHHHHHh
Q 019670 147 MVWLIDFQGFNLSHIS-VKVTRETAHVLQDHYPERLGLAILYNPPKFFEPFWTVV 200 (337)
Q Consensus 147 ~v~IiDl~g~s~~~~~-~~~~k~~~~~lq~~YPerl~~i~ivN~P~~~~~~~~lv 200 (337)
-.+|+||++++.-..+ +..+..+...++ .+=..+++.|++.-+.-++...
T Consensus 50 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPFMDITGIQTLEEMIQSFH----KRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCcccHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 4689999998755433 555555554444 4567899999987776666654
Done!