BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019671
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 29/279 (10%)
Query: 14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYV 70
++ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 2 SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71 SVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F
Sbjct: 61 LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 112
Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
+R L E + + DD L + C V VV++ + Q + + VP + L L E+
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172
Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLF 245
D V + F+AHK ILAARSPVF A F + + ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
Query: 246 IYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 284
IYT K P++ M LLAAAD Y ++R
Sbjct: 233 IYTGKAPNL------------DKMADDLLAAADKYALER 259
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL 226
+ VP + L L E+ D V + F+AHK ILAARSPVF A F + +
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 227 DKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIXXXXXXXXXXNMVQHLLAAADLYNVDR 284
++V + DVEP +FK M+ FIYT K P++ M LLAAAD Y ++R
Sbjct: 65 NRVEINDVEPEVFKEMMCFIYTGKAPNL------------DKMADDLLAAADKYALER 110
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL 226
+ VP + L L E+ D V + F+AHK ILAARSPVF A F +
Sbjct: 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKK 73
Query: 227 DKVVVKDVEPSIFKAMLLFIYTDKFPD 253
++V + DVEP +FK FIYT K P+
Sbjct: 74 NRVEINDVEPEVFKEXXCFIYTGKAPN 100
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 9 TSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPED 65
+S S + V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 2 SSGSSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES 60
Query: 66 GALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWG 125
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG
Sbjct: 61 KDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWG 112
Query: 126 YKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRL 159
+K+F +R L E + + DD L + C V VV++ +
Sbjct: 113 FKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV 148
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
+ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 72 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFK 131
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F +
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 117
Query: 132 RTSL--ETSDYIKDDCLLINCTVGVVRN 157
R L E + + DD L + C V VV++
Sbjct: 118 RDFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
+ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 72 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFK 131
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F +
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIR 117
Query: 132 RTSL--ETSDYIKDDCLLINCTVGVVRN 157
R L E + + DD L + C V VV++
Sbjct: 118 RGFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 184 SEIGCDIVFEVG----DETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIF 239
+E+ D+ F VG T AHK +LA S VF A FYG + + ++ + DVEP+ F
Sbjct: 5 NELXADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVK-SEIHIPDVEPAAF 63
Query: 240 KAMLLFIYTDK 250
+L + Y+D+
Sbjct: 64 LILLKYXYSDE 74
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR 224
Y V +++ GL D + +I CD+ V + F+AH+ +LAA S F + LVG
Sbjct: 10 YESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF---WQALVGQT 66
Query: 225 NLDKVVV--KDVEPSIFKAMLLFIYTDKF 251
D VV ++V F +L F YT K
Sbjct: 67 KNDLVVSLPEEVTARGFGPLLQFAYTAKL 95
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVV 230
SD+ L L +I D+V V E F+AHK +L A S +F + F + RNL +
Sbjct: 13 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-RNLSVIN 71
Query: 231 VK-DVEPSIFKAMLLFIYTDKF 251
+ ++ P F +L F+YT +
Sbjct: 72 LDPEINPEGFNILLDFMYTSRL 93
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLV-GD 223
Y V +++ L D + ++ CD+ V + F+AH+ +LAA S F ++ G G+
Sbjct: 7 YESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE 66
Query: 224 RNL---DKVVVKDVEPSIFKAMLLFIYTDKF 251
N+ ++V VK EP ++ F YT K
Sbjct: 67 LNITLPEEVTVKGFEP-----LIQFAYTAKL 92
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR 224
Y V +++ L D + ++ CD+ V + F+AH+ +LAA S F ++ G D
Sbjct: 14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT-DA 72
Query: 225 NLDKVVVKDVEPSIFKAMLLFIYTDKF 251
L + ++V F+ ++ F YT K
Sbjct: 73 ELTVTLPEEVTVKGFEPLIQFAYTAKL 99
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV 231
SD+ L L +I D+V V E F+AHK +L A S + FY + D+ + V
Sbjct: 17 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL----FYSIFTDQLKCNLSV 72
Query: 232 KDVEPSI----FKAMLLFIYTDKF 251
+++P I F +L F+YT +
Sbjct: 73 INLDPEINPEGFCILLDFMYTSRL 96
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK---DVEPSIFKAMLL 244
CD+ V FKAH+ +LAA S FR F N VV+ V+P F+ +L
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFRDLF------NNSRSAVVELPAAVQPQSFQQILS 87
Query: 245 FIYTDKF 251
F YT +
Sbjct: 88 FCYTGRL 94
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD+V V + F AH+ +LA S +F F+ RN + + P F+ +L + Y
Sbjct: 28 CDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTFQQILEYAY 82
Query: 248 T 248
T
Sbjct: 83 T 83
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD+V V + F AH+ +LA S +F F+ RN + + P F+ +L + Y
Sbjct: 29 CDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTFQQILEYAY 83
Query: 248 T 248
T
Sbjct: 84 T 84
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD+ V D F+AHK IL+A S F Q + + G V + + IF +L +IY
Sbjct: 34 CDVTVIVEDRKFRAHKNILSASSTYFH-QLFSVAG----QVVELSFIRAEIFAEILNYIY 88
Query: 248 TDKFPDV 254
+ K V
Sbjct: 89 SSKIVRV 95
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD+ V D F+AHK IL+A S F Q + + G V + + IF +L +IY
Sbjct: 32 CDVTVIVEDRKFRAHKNILSASSTYFH-QLFSVAG----QVVELSFIRAEIFAEILNYIY 86
Query: 248 TDKFPDV 254
+ K V
Sbjct: 87 SSKIVRV 93
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD + VG + F AH L+LA S Q G G L + + PS F +L F+Y
Sbjct: 31 CDTLITVGSQEFPAHSLVLAGVS-----QQLGRRGQWALG----EGISPSTFAQLLNFVY 81
Query: 248 TD 249
+
Sbjct: 82 GE 83
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 153 GVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPV 212
G + ++GP P SD+ GL + + CD+V V F H+ +LAA S
Sbjct: 1 GSMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY 60
Query: 213 FRAQFY--GLVGDRNLDKVVVKDVEPSIFKAMLLFIYT 248
F+ F +V +N+ + + V A++ F YT
Sbjct: 61 FKKLFTSGAVVDQQNVYE--IDFVSAEALTALMDFAYT 96
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTD------VRALFELTLVDQSGKGKHKV 102
GY + + + A Y+S+F+ D + LT++DQS + V
Sbjct: 40 GYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQS---EAPV 96
Query: 103 HSHFDRALESGPYTLKYRGSM-------WGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154
+ + +++ P L ++ +GY F +L +IKDD LL+ C V
Sbjct: 97 RQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 155
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTD------VRALFELTLVDQSGKGKHKV 102
GY + + + A Y+S+F+ D + LT++DQS + V
Sbjct: 39 GYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQS---EAPV 95
Query: 103 HSHFDRALESGPYTLKYRGSM-------WGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154
+ + +++ P L ++ +GY F +L +IKDD LL+ C V
Sbjct: 96 RQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 154
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD +VG FKAH +LA S F++ L GD + VV+ IF +L F Y
Sbjct: 25 CDATLDVGGLVFKAHWSVLACCSHFFQS----LYGDGSGGSVVLPAGFAEIFGLLLDFFY 80
Query: 248 T 248
T
Sbjct: 81 T 81
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRN--LDKVVVKDVEPSIFKAMLLF 245
CD +G+ FKAH+ +LA+ S F A Y + N LD+ VK F+ +L F
Sbjct: 23 CDCTIVIGEFQFKAHRNVLASFSEYFGA-IYRSTSENNVFLDQSQVK---ADGFQKLLEF 78
Query: 246 IYT 248
IYT
Sbjct: 79 IYT 81
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY 247
CD +VG FKAH +LA S F+ + GD VV+ IF +L F Y
Sbjct: 26 CDATLDVGGLVFKAHWSVLACCSHFFQR----IYGDGTGGSVVLPAGFAEIFGLLLDFFY 81
Query: 248 T 248
T
Sbjct: 82 T 82
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 167 IPVP--PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFY--GLVG 222
IP P SD+ GL + + CD+V V F H+ +LAA S F+ F +V
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 62
Query: 223 DRNLDKVVVKDVEPSIFKAMLLFIYT 248
+N+ + + V A++ F YT
Sbjct: 63 QQNVYE--IDFVSAEALTALMDFAYT 86
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDV-----RALFELTLVDQSGKGKHKVH 103
GY Y +G G F+ + E + R L L+DQSGK H V
Sbjct: 59 GYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVE 118
Query: 104 SHFDRALESGPYTLKYR---GSM---WGYKRFFKRTSLETSD--YIKDDCLLINCTVGVV 155
+ ++ P + ++ G M G RF ++LE S YIKDD L + V +
Sbjct: 119 T-----FKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 161 GPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQF 217
GP P + + L + + CD F V FKAHK +LAA S F+ F
Sbjct: 1 GPLGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQF 217
CD F V FKAHK +LAA S F+ F
Sbjct: 26 CDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 28 YSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE------DGALYVSVFIALASEG 80
Y L++ MGPG G W +FYP+ +PE DG L VF +L E
Sbjct: 242 YGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEA 300
>pdb|4AM5|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM5|B Chain B, Bacterioferritin From Blastochloris Viridis
pdb|4AM2|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM2|B Chain B, Bacterioferritin From Blastochloris Viridis
pdb|4AM4|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM4|B Chain B, Bacterioferritin From Blastochloris Viridis
Length = 159
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 97 KGKHKVHSHFDRALES-----GPYTLKYRG-SMWGYKRFFKRTSLETSDYIKDDCLLINC 150
KG KV + +R L S Y L YR WGYK K+ E+ + + +
Sbjct: 2 KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLEDWGYKDLAKKWRAESIEEMAHADKFVER 61
Query: 151 TVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCD 189
+ LEG + P +GQ +K++LES++ +
Sbjct: 62 ILF-----LEGLPNLQ-TLDPLRIGQTVKEVLESDLAAE 94
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 80 GTDVRALFELTLVDQSGKGKHKVHS------------HFDRALESGPYTLKYRGSMWGYK 127
G + +FEL + QS +GKH + H LE Y LK R M Y+
Sbjct: 203 GFKIPGIFELGISSQSDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYE 262
Query: 128 --RFFKRTSLETS 138
+ KR LE S
Sbjct: 263 FLQRVKRLPLEYS 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,537,953
Number of Sequences: 62578
Number of extensions: 392294
Number of successful extensions: 664
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 34
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)