Query 019671
Match_columns 337
No_of_seqs 256 out of 2195
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 1E-26 2.2E-31 222.4 13.9 151 171-337 9-161 (557)
2 PHA02790 Kelch-like protein; P 99.9 2.8E-26 6.2E-31 216.3 11.7 146 175-336 10-157 (480)
3 PHA03098 kelch-like protein; P 99.9 1.3E-25 2.9E-30 215.8 13.5 136 184-337 6-143 (534)
4 KOG4350 Uncharacterized conser 99.9 5.1E-26 1.1E-30 196.9 8.8 154 172-336 29-182 (620)
5 KOG4441 Proteins containing BT 99.9 4.3E-25 9.4E-30 210.6 13.7 154 170-337 19-172 (571)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 2.2E-24 4.9E-29 169.4 12.9 131 19-153 1-148 (148)
7 cd03777 MATH_TRAF3 Tumor Necro 99.9 3.6E-24 7.7E-29 174.3 13.4 133 17-153 37-184 (186)
8 cd03774 MATH_SPOP Speckle-type 99.9 6.6E-24 1.4E-28 167.3 13.8 131 16-156 2-138 (139)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 5.2E-24 1.1E-28 170.0 11.9 133 19-153 1-154 (154)
10 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.1E-23 2.3E-28 164.7 11.7 128 19-153 1-147 (147)
11 cd03772 MATH_HAUSP Herpesvirus 99.9 2.1E-23 4.5E-28 163.9 13.3 126 18-156 2-134 (137)
12 cd03776 MATH_TRAF6 Tumor Necro 99.9 5.3E-24 1.2E-28 169.2 9.9 131 19-153 1-147 (147)
13 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.4E-23 3E-28 167.6 10.8 131 19-153 1-149 (149)
14 cd03771 MATH_Meprin Meprin fam 99.9 6.7E-23 1.4E-27 163.1 12.6 132 18-153 1-167 (167)
15 cd03773 MATH_TRIM37 Tripartite 99.9 6.5E-23 1.4E-27 160.3 12.0 124 18-153 4-130 (132)
16 cd03775 MATH_Ubp21p Ubiquitin- 99.9 2.5E-22 5.4E-27 157.0 12.4 118 20-153 2-134 (134)
17 cd03778 MATH_TRAF2 Tumor Necro 99.8 3.7E-20 8E-25 146.2 12.6 135 16-153 16-164 (164)
18 cd00121 MATH MATH (meprin and 99.8 1.3E-19 2.8E-24 140.2 14.1 120 19-153 1-126 (126)
19 PF00651 BTB: BTB/POZ domain; 99.8 1.4E-20 3.1E-25 142.6 8.4 107 178-296 1-110 (111)
20 KOG4591 Uncharacterized conser 99.8 3.6E-20 7.8E-25 146.0 8.3 147 172-333 51-200 (280)
21 KOG2075 Topoisomerase TOP1-int 99.8 2E-19 4.4E-24 159.6 12.9 156 167-336 94-255 (521)
22 PF00917 MATH: MATH domain; I 99.8 4.2E-18 9.2E-23 130.6 9.4 113 25-154 1-119 (119)
23 smart00225 BTB Broad-Complex, 99.7 1.3E-17 2.8E-22 120.8 8.9 90 189-290 1-90 (90)
24 KOG0783 Uncharacterized conser 99.7 3.1E-18 6.7E-23 160.3 5.7 142 186-336 709-852 (1267)
25 cd03783 MATH_Meprin_Alpha Mepr 99.7 3.4E-17 7.4E-22 128.6 10.0 132 19-153 2-167 (167)
26 cd03782 MATH_Meprin_Beta Mepri 99.7 7.2E-17 1.6E-21 126.0 10.2 134 18-153 1-167 (167)
27 KOG4682 Uncharacterized conser 99.6 7.6E-16 1.7E-20 134.0 9.6 142 178-334 60-205 (488)
28 smart00061 MATH meprin and TRA 99.6 1.1E-14 2.4E-19 106.8 9.4 89 21-130 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 1.1E-13 2.3E-18 123.4 10.6 225 23-335 8-239 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.1 1.1E-10 2.5E-15 109.4 7.3 124 16-156 36-172 (1089)
31 KOG0783 Uncharacterized conser 99.0 6E-10 1.3E-14 105.6 7.5 85 169-253 536-636 (1267)
32 KOG2838 Uncharacterized conser 98.7 1.5E-08 3.3E-13 84.6 5.1 134 172-305 220-396 (401)
33 KOG0511 Ankyrin repeat protein 98.4 7.3E-07 1.6E-11 78.0 6.1 124 197-335 301-434 (516)
34 KOG2716 Polymerase delta-inter 98.3 5.9E-06 1.3E-10 69.0 9.5 96 190-296 7-104 (230)
35 KOG2838 Uncharacterized conser 98.3 6.8E-07 1.5E-11 74.9 3.9 105 169-282 112-218 (401)
36 PF02214 BTB_2: BTB/POZ domain 98.0 7E-06 1.5E-10 59.7 3.9 88 190-289 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.4 0.0016 3.4E-08 46.0 7.7 84 190-281 19-111 (112)
38 KOG0511 Ankyrin repeat protein 97.0 0.0005 1.1E-08 60.7 2.5 103 174-290 133-239 (516)
39 PF11822 DUF3342: Domain of un 96.9 0.0038 8.3E-08 54.7 7.4 116 197-324 14-141 (317)
40 smart00512 Skp1 Found in Skp1 96.9 0.0053 1.1E-07 45.4 7.2 92 190-282 4-104 (104)
41 KOG2714 SETA binding protein S 96.8 0.0052 1.1E-07 55.5 7.6 93 188-292 11-110 (465)
42 PF03931 Skp1_POZ: Skp1 family 96.7 0.0088 1.9E-07 39.5 6.6 56 190-248 3-59 (62)
43 KOG1665 AFH1-interacting prote 96.6 0.0073 1.6E-07 49.7 6.6 92 189-291 10-105 (302)
44 KOG1724 SCF ubiquitin ligase, 96.4 0.032 6.9E-07 44.5 8.8 112 195-307 13-137 (162)
45 KOG1863 Ubiquitin carboxyl-ter 96.2 0.0061 1.3E-07 63.6 4.9 106 39-156 42-153 (1093)
46 KOG0297 TNF receptor-associate 95.4 0.01 2.3E-07 54.7 2.7 78 16-94 277-365 (391)
47 COG5201 SKP1 SCF ubiquitin lig 95.3 0.17 3.7E-06 37.9 8.0 111 189-302 3-127 (158)
48 KOG1778 CREB binding protein/P 94.0 0.023 5.1E-07 50.3 1.1 127 189-326 28-155 (319)
49 KOG2715 Uncharacterized conser 92.0 0.58 1.3E-05 37.0 6.1 97 188-296 21-121 (210)
50 PF01466 Skp1: Skp1 family, di 91.6 0.34 7.3E-06 33.6 4.0 48 267-314 13-63 (78)
51 smart00875 BACK BTB And C-term 89.1 0.27 5.8E-06 35.5 2.0 24 272-295 3-26 (101)
52 KOG2723 Uncharacterized conser 77.0 6.6 0.00014 33.0 5.4 95 187-292 7-105 (221)
53 PF07707 BACK: BTB And C-termi 74.9 3.3 7.2E-05 29.9 3.0 25 302-326 1-25 (103)
54 PF11822 DUF3342: Domain of un 73.2 0.87 1.9E-05 40.3 -0.6 41 295-337 70-110 (317)
55 KOG3840 Uncharaterized conserv 71.0 7.3 0.00016 34.1 4.4 87 185-282 93-184 (438)
56 PF00651 BTB: BTB/POZ domain; 69.9 3.2 6.8E-05 30.4 1.8 29 298-326 80-108 (111)
57 PF07707 BACK: BTB And C-termi 64.0 16 0.00035 26.1 4.6 55 271-326 2-71 (103)
58 PHA03098 kelch-like protein; P 51.4 12 0.00026 36.3 2.7 30 297-326 73-102 (534)
59 PHA02713 hypothetical protein; 48.4 23 0.00049 34.7 4.0 30 297-326 91-120 (557)
60 PHA02790 Kelch-like protein; P 40.9 16 0.00035 34.9 1.8 30 297-326 88-117 (480)
61 PF11459 DUF2893: Protein of u 40.3 1.1E+02 0.0025 20.5 6.8 63 240-318 5-67 (69)
62 KOG2075 Topoisomerase TOP1-int 39.8 22 0.00048 33.4 2.3 30 297-326 185-214 (521)
63 smart00875 BACK BTB And C-term 37.6 34 0.00075 24.1 2.7 28 306-335 5-32 (101)
64 KOG4682 Uncharacterized conser 29.1 47 0.001 30.7 2.5 30 267-296 172-201 (488)
65 KOG4441 Proteins containing BT 25.9 55 0.0012 32.2 2.6 31 296-326 101-131 (571)
66 PF01466 Skp1: Skp1 family, di 24.5 1.6E+02 0.0034 20.1 4.0 34 291-326 7-40 (78)
67 COG4393 Predicted membrane pro 22.8 1.7E+02 0.0036 26.4 4.6 58 137-215 342-402 (405)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=1e-26 Score=222.43 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=140.6
Q ss_pred CCchhhhHHHhhhcCCCCCeEEEeC-CeEEeeehHHHHhcCHHHHHHhcccccCCC-CCcEEecCCCHHHHHHHhhhhcc
Q 019671 171 PSDMGQGLKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKAMLLFIYT 248 (337)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~Dv~~~v~-~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iY~ 248 (337)
...+++.|++++.++.++||+|.|+ |++|+|||.|||++|+||++||.++|+|.. ..+|.|.++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 4567899999999999999999997 899999999999999999999999999864 78899999999999999999999
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCc
Q 019671 249 DKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATP 328 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 328 (337)
+.+ .. +++.+||.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|++.|.+||+
T Consensus 89 ~~i--~~------------~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~-- 152 (557)
T PHA02713 89 RHI--SS------------MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM-- 152 (557)
T ss_pred CCC--CH------------HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--
Confidence 974 32 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcC
Q 019671 329 ANLGGACCS 337 (337)
Q Consensus 329 ~~~~~i~~s 337 (337)
+||.++.++
T Consensus 153 ~~f~~v~~~ 161 (557)
T PHA02713 153 SNIPTLITT 161 (557)
T ss_pred HHHHHHhCC
Confidence 999988764
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=2.8e-26 Score=216.35 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=133.4
Q ss_pred hhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEe--cCCCHHHHHHHhhhhccCCCC
Q 019671 175 GQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV--KDVEPSIFKAMLLFIYTDKFP 252 (337)
Q Consensus 175 ~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iY~~~~~ 252 (337)
-+++-.+..++.++||++.+ |++|+|||.|||+.||||++||.++|+|+.. +|.+ .++++++++.+|+|+||+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 34556667788999998865 5699999999999999999999999999854 5665 389999999999999999999
Q ss_pred CcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChh
Q 019671 253 DVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLG 332 (337)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~ 332 (337)
+.. +++.+||.+|+.|+++.+++.|++||.+.|+++||+.++.+|+.|++.+|++.+.+||. +||.
T Consensus 88 it~------------~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF~ 153 (480)
T PHA02790 88 IDS------------HNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHFL 153 (480)
T ss_pred Eec------------ccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhHH
Confidence 886 79999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhhc
Q 019671 333 GACC 336 (337)
Q Consensus 333 ~i~~ 336 (337)
++.+
T Consensus 154 ~v~~ 157 (480)
T PHA02790 154 ELED 157 (480)
T ss_pred HHhc
Confidence 8875
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=215.83 Aligned_cols=136 Identities=20% Similarity=0.297 Sum_probs=129.0
Q ss_pred cCCCCCeEEEe--CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCC
Q 019671 184 SEIGCDIVFEV--GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTT 261 (337)
Q Consensus 184 ~~~~~Dv~~~v--~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~ 261 (337)
++.++||+|.+ +|++|+|||.||+++|+||++||.++++ ..+|.|.+ ++++|+.+|+|+||+.+.+..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~------ 75 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS------ 75 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH------
Confidence 67899999998 9999999999999999999999999887 56799999 999999999999999998765
Q ss_pred CccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhhhhcC
Q 019671 262 SMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS 337 (337)
Q Consensus 262 ~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~~s 337 (337)
+++.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|+.|++.+|++.|.+||+ .||.++.++
T Consensus 76 ------~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~ 143 (534)
T PHA03098 76 ------NNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYND 143 (534)
T ss_pred ------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999 999888764
No 4
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=5.1e-26 Score=196.86 Aligned_cols=154 Identities=29% Similarity=0.404 Sum_probs=145.1
Q ss_pred CchhhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCC
Q 019671 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKF 251 (337)
Q Consensus 172 ~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~ 251 (337)
..+.+++.+++.+++.+||+|+|++++|+|||+|||+||.||++|+.|+|.|+.+..|++.+...++|+.+|+||||+.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCCh
Q 019671 252 PDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANL 331 (337)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 331 (337)
.... ..++.+.+.|.+|++|++..|.....++|.+.+..+|+..++..|..|++.+|.+.|+.|+. +|.
T Consensus 109 ~l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA 177 (620)
T KOG4350|consen 109 DLAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNA 177 (620)
T ss_pred eccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCH
Confidence 8765 33588999999999999999999999999999999999999999999999999999999999 888
Q ss_pred hhhhc
Q 019671 332 GGACC 336 (337)
Q Consensus 332 ~~i~~ 336 (337)
.+++.
T Consensus 178 ~~lL~ 182 (620)
T KOG4350|consen 178 DQLLE 182 (620)
T ss_pred Hhhhc
Confidence 88764
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=4.3e-25 Score=210.58 Aligned_cols=154 Identities=28% Similarity=0.438 Sum_probs=147.2
Q ss_pred CCCchhhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccC
Q 019671 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTD 249 (337)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~ 249 (337)
+...+.+.++.+...+.++||++.+++++|+|||.||||.||||++||.++++|+.+.+|.+.++++++++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcC
Q 019671 250 KFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPA 329 (337)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 329 (337)
.+.+.. +++.+||.+|+.|+++.+.+.|.+||.+.+.+.||+.+..+|+.|++..|.+.+-.|+. .
T Consensus 99 ~i~i~~------------~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~ 164 (571)
T KOG4441|consen 99 KLEISE------------DNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--Q 164 (571)
T ss_pred eEEech------------HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--H
Confidence 999876 89999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ChhhhhcC
Q 019671 330 NLGGACCS 337 (337)
Q Consensus 330 ~~~~i~~s 337 (337)
||.++.++
T Consensus 165 ~F~~v~~~ 172 (571)
T KOG4441|consen 165 HFAEVSKT 172 (571)
T ss_pred HHHHHhcc
Confidence 99988754
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.92 E-value=2.2e-24 Score=169.44 Aligned_cols=131 Identities=27% Similarity=0.427 Sum_probs=104.3
Q ss_pred eEEEEEEccccccc-CCCCCC--eeeeccc--eecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 019671 19 GSHQFTVKGYSLAK-GMGPGK--CLSSDVF--TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (337)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~--~~~S~~f--~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~~~~ 87 (337)
|.++|+|.+|+.++ .++.|+ ++.|++| .++||+|+|++||||.+.+.++ |||+||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGT-HLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCccccccCcceEEEE
Confidence 57999999999886 467888 8999999 8999999999999999877777 99999999865 89999999
Q ss_pred EEEEeecCCCCccceecccccccccCccccccc----CcccCccceeeccccccC--CCcCCCeEEEEEecc
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYR----GSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 153 (337)
+|+|+||++++.+....... ......|... +..||+++|+++++|+.+ +|+.||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~~~---~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKA---DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceeeec---CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 99999998764431111100 0001233222 457999999999999864 999999999999873
No 7
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.92 E-value=3.6e-24 Score=174.26 Aligned_cols=133 Identities=26% Similarity=0.384 Sum_probs=105.3
Q ss_pred eeeEEEEEEccccccc-CCCCCC--eeeeccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEE
Q 019671 17 VNGSHQFTVKGYSLAK-GMGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRA 85 (337)
Q Consensus 17 ~~~~~~w~I~~fs~~~-~~~~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~~ 85 (337)
..|+|+|+|.+|+..+ .++.|+ +++||+|.+| ||.|+|++||||.+.+.++ |||+||++..+ .|++.+
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~-~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGT-HLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCCceeE
Confidence 4799999999999876 467777 8999999999 9999999999999877767 99999999854 699999
Q ss_pred EEEEEEeecCCCCccceecccccccccCccccc-cc---CcccCccceeeccccccCCCcCCCeEEEEEecc
Q 019671 86 LFELTLVDQSGKGKHKVHSHFDRALESGPYTLK-YR---GSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (337)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 153 (337)
+++|+|+||++........- ..... ...|. +. +..||+++|++++.|+.++|+.||++.|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~-~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAF-KPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCcccccccee-ccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEe
Confidence 99999999986322211100 00000 02232 22 557999999999999999999999999999885
No 8
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.91 E-value=6.6e-24 Score=167.25 Aligned_cols=131 Identities=27% Similarity=0.592 Sum_probs=106.5
Q ss_pred ceeeEEEEEEcccccccCCCCCCeeeeccceecCe---eEEEEEEcCCCCCCCCCceEEEEEEecC-CCceEEEEEEEEE
Q 019671 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTL 91 (337)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lsl~L~~~~-~~~~~~~~~~~~l 91 (337)
+...+|.|+|+||+.+++ ..|+++.|++|.+||+ +|+|.+||+|...+..+ |+|+||++.+ ..+++.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~-~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCC-eEEEEEEEccCCCCcEEEEEEEEE
Confidence 568899999999998865 5688999999999995 99999999998766556 9999999874 4578999999999
Q ss_pred eecCCCCccceecccccccccCcccccccCcccCccceeeccccc--cCCCcCCCeEEEEEecceec
Q 019671 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 156 (337)
+|++++...... ....+.|. ....|||..|+++++|. .+||+.||+|+|+|+|+|..
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999876432111 11124453 35789999999999995 57899999999999999864
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.91 E-value=5.2e-24 Score=170.02 Aligned_cols=133 Identities=23% Similarity=0.381 Sum_probs=103.2
Q ss_pred eEEEEEEcccccccCC--C-CCCeeeeccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 019671 19 GSHQFTVKGYSLAKGM--G-PGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (337)
Q Consensus 19 ~~~~w~I~~fs~~~~~--~-~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~~~~ 87 (337)
|.|+|+|.+|+.++++ . .|+.+.|++|.+| ||.|+|++||||...+.++ |+|+||++..+ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~-~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGS-HLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCC-EEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999988763 3 5789999999999 9999999999998877666 99999999853 79999999
Q ss_pred EEEEeecCCCCccceeccccccccc--Cccccc--------ccCcccCccceeeccccccCCCcCCCeEEEEEecc
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALES--GPYTLK--------YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 153 (337)
+|+|+||.+...... .+....+.+ ....|. ..+.+||+..|+++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~-~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKP-QHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccC-cceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 999999987521100 000011111 112232 23457999999999999989999999999999874
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.91 E-value=1.1e-23 Score=164.67 Aligned_cols=128 Identities=22% Similarity=0.398 Sum_probs=100.0
Q ss_pred eEEEEEEccccccc-CCCCC--Ceeeeccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 019671 19 GSHQFTVKGYSLAK-GMGPG--KCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (337)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~--~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~~~~ 87 (337)
|.++|+|.||+... +...| ..++||+|..+ ||.|+|++||||.+.+.++ |||+||++..+ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~-~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGT-HISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCC-EEEEEEEEecCCcccccCcceEEEE
Confidence 57999999998543 33333 47999999865 9999999999999877767 99999999854 79999999
Q ss_pred EEEEeecCCCCccceecccccccccC--ccccc----ccCcccCccceeeccccccC--CCcCCCeEEEEEecc
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALESG--PYTLK----YRGSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 153 (337)
+|+|+||++.+... .. +.+. ...|. ..+..||+++|+++++|+.+ +|+.||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~-~~-----~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI-DA-----FRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc-Ee-----ecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998654321 11 1111 12343 23457999999999999875 999999999999874
No 11
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.91 E-value=2.1e-23 Score=163.92 Aligned_cols=126 Identities=16% Similarity=0.254 Sum_probs=101.1
Q ss_pred eeEEEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCC-CCCceEEEEEEecC----CCceEEEEEEEEEe
Q 019671 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE-DGALYVSVFIALAS----EGTDVRALFELTLV 92 (337)
Q Consensus 18 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~-~~~~~lsl~L~~~~----~~~~~~~~~~~~l~ 92 (337)
.++|.|+|+||+.+ ++.++||.|.+||++|+|.+||+|.... ...+++|+||.|.. ..|++.|+|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 46899999999987 4689999999999999999999996542 12239999999972 36999999999999
Q ss_pred ecCCCCccceecccccccccCcccccccCcccCccceeeccccc--cCCCcCCCeEEEEEecceec
Q 019671 93 DQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (337)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 156 (337)
|+.+....... . ..+.|......|||++|++|++|. .+|||.||+++|+|+|++..
T Consensus 77 ~~~~~~~~~~~-----~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSR-----R---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEE-----e---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 99853221111 1 123454556789999999999995 68999999999999998875
No 12
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.90 E-value=5.3e-24 Score=169.16 Aligned_cols=131 Identities=22% Similarity=0.326 Sum_probs=101.2
Q ss_pred eEEEEEEccccccc-CCCCCCe--eeecccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEEEEE
Q 019671 19 GSHQFTVKGYSLAK-GMGPGKC--LSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (337)
Q Consensus 19 ~~~~w~I~~fs~~~-~~~~~~~--~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~~~~ 87 (337)
|+|+|+|.+|+.++ .++.|+. ++||+|.+ |||+|+|++||||...+..+ |||+||++.++ .|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~-~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPN-YISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCcccCCccccee
Confidence 57999999999654 4777885 88999985 79999999999999876666 99999999742 58999999
Q ss_pred EEEEeecCCCCccceecccccccccCccccc-----ccCcccCccceeeccccccCCCcCCCeEEEEEecc
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 153 (337)
+|+|+||.++.......... ......|. .++..|||.+|+++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~~~---~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMS---KPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEc---CCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998743321110000 00012232 13467999999999999988999999999999974
No 13
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.90 E-value=1.4e-23 Score=167.60 Aligned_cols=131 Identities=28% Similarity=0.466 Sum_probs=101.3
Q ss_pred eEEEEEEcccccccC---CCCCCeeeeccceec--CeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEEEEE
Q 019671 19 GSHQFTVKGYSLAKG---MGPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALF 87 (337)
Q Consensus 19 ~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~------~~~~~~~~~ 87 (337)
++|+|+|++|+.+++ .+.++.++||.|.+| |++|+|.+||+|.....++ |||+||++.. ..|++.+++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~-~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGT-HLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCC-EEEEEEEEeccCCCccccCCccceE
Confidence 579999999998865 256789999999999 9999999999998766656 9999999863 359999999
Q ss_pred EEEEeecCCCCccceeccccccccc--Cccccc-----ccCcccCccceeeccccccCCCcCCCeEEEEEecc
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALES--GPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 153 (337)
+|+|+||.++.... . ....+.+ ....|. ....+|||.+|+++++|++.|||.||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~-~--~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRK-H--ITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccC-c--eEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 99999998741100 0 0011100 011222 24578999999999999988999999999999974
No 14
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.90 E-value=6.7e-23 Score=163.08 Aligned_cols=132 Identities=23% Similarity=0.436 Sum_probs=101.6
Q ss_pred eeEEEEEEccccccc-CCCCCCeeeeccc-eecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC------Cce-EEEEEE
Q 019671 18 NGSHQFTVKGYSLAK-GMGPGKCLSSDVF-TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTD-VRALFE 88 (337)
Q Consensus 18 ~~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~-~~~~~~ 88 (337)
+..|+|+|.||+.++ +++.|+.++||+| .+|||+|+|++||||.+. .++ |||+||++.++ .|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~-~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPG-YTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCC-cceEEEEEecCCccccccCcceeEEEE
Confidence 357999999999985 6788999999999 899999999999999987 656 99999999742 488 689999
Q ss_pred EEEeecCCCCccceecccccccccCc---------cc----------cc-------ccCcccCccceeeccccccCCCcC
Q 019671 89 LTLVDQSGKGKHKVHSHFDRALESGP---------YT----------LK-------YRGSMWGYKRFFKRTSLETSDYIK 142 (337)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~----------~~-------~~~~~~G~~~fi~~~~L~~~~~l~ 142 (337)
|+|+||+.+.....+.+ +++.+.+ +. .. .++.+|||+.|++++.|+..+||.
T Consensus 79 ~~LlDQ~~~~~~r~~~~--~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQ--RSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcce--EEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCc
Confidence 99999974222111111 1111111 00 11 144589999999999999888999
Q ss_pred CCeEEEEEecc
Q 019671 143 DDCLLINCTVG 153 (337)
Q Consensus 143 ~d~l~i~~~v~ 153 (337)
||+|.|+++++
T Consensus 157 ~dtl~i~~~~~ 167 (167)
T cd03771 157 GDDLIILLDFE 167 (167)
T ss_pred CCEEEEEEEeC
Confidence 99999998864
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.89 E-value=6.5e-23 Score=160.34 Aligned_cols=124 Identities=28% Similarity=0.541 Sum_probs=99.6
Q ss_pred eeEEEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC-CceEEEEEEEEEeecCC
Q 019671 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSG 96 (337)
Q Consensus 18 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-~~~~~~~~~~~l~~~~~ 96 (337)
.++++|+|+|||.+++ .|+++.|+.|.+||++|+|.+||+|.....++ |||+||.+... .|.+.++++++|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~-~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEVRGN-FLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCCCCC-EEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4679999999998854 57899999999999999999999998766666 99999998753 57888999999999953
Q ss_pred CCccceecccccccccCcccccccCcccCccceeeccccccCCCcCC--CeEEEEEecc
Q 019671 97 KGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKD--DCLLINCTVG 153 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~~~l~~--d~l~i~~~v~ 153 (337)
...... .. ..+.|.. ..+|||..|+++++|+++|||.| |+|+|+|.|.
T Consensus 81 ~~~~~~-~~-------~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNIK-RE-------FASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CccceE-Ee-------ccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 322111 11 1233432 46799999999999988899999 9999999984
No 16
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.88 E-value=2.5e-22 Score=156.97 Aligned_cols=118 Identities=24% Similarity=0.456 Sum_probs=95.8
Q ss_pred EEEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC---------CCceEEEEEEEE
Q 019671 20 SHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS---------EGTDVRALFELT 90 (337)
Q Consensus 20 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~---------~~~~~~~~~~~~ 90 (337)
+|.|+|+||+.+ ++.+.|+.|.+||++|+|.+||+|+.. .+ ++|+||.+.+ .+|.+.|+|+++
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~-~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ--TG-GVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC--CC-eEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999995 468999999999999999999999765 34 9999999852 368899999999
Q ss_pred EeecCCCCccceecccccccccCcccccccCcccCccceeeccccc------cCCCcCCCeEEEEEecc
Q 019671 91 LVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE------TSDYIKDDCLLINCTVG 153 (337)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~------~~~~l~~d~l~i~~~v~ 153 (337)
|+|+.+....... ...+.|......|||.+|+++++|+ ++|||.||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999743221111 1135666566889999999999997 47999999999998863
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.84 E-value=3.7e-20 Score=146.18 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=99.9
Q ss_pred ceeeEEEEEEcccccccCC-CC--CCeeeecccee--cCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEE
Q 019671 16 TVNGSHQFTVKGYSLAKGM-GP--GKCLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVR 84 (337)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~-~~--~~~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~------~~~~~~ 84 (337)
...|.++|+|.||+.+..- .. ...++||+|+. +||+|+|++||||++...+. |||+|+++.. -.||+.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~-~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCC-EEEEEEEEecCCcCcccCCcee
Confidence 3479999999999975442 22 34889999975 58999999999999887777 9999999973 369999
Q ss_pred EEEEEEEeecCCCCccceecccccccccCcc-cc-cccCcccCccceeecccccc-CCCcCCCeEEEEEecc
Q 019671 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPY-TL-KYRGSMWGYKRFFKRTSLET-SDYIKDDCLLINCTVG 153 (337)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~G~~~fi~~~~L~~-~~~l~~d~l~i~~~v~ 153 (337)
.+++|+|+||++.. +..... ........+ .. ...+..|||+.|++.++|.. .+|+.||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r~-hi~~~~-~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNRE-HVIDAF-RPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCC-cceeEE-EcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 99999999997422 221111 000000001 01 22355799999999999974 7999999999999873
No 18
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.83 E-value=1.3e-19 Score=140.25 Aligned_cols=120 Identities=35% Similarity=0.645 Sum_probs=95.7
Q ss_pred eEEEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC-----CceEEEEEEEEEee
Q 019671 19 GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-----GTDVRALFELTLVD 93 (337)
Q Consensus 19 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-----~~~~~~~~~~~l~~ 93 (337)
++|+|+|.+|+. ..++.+.||.|.++|+.|+|.+||+|... .++ ++|+||.|... .|++.++++|.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~-~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGD-YLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCC-EEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999988 34679999999999999999999999866 334 99999999843 59999999999999
Q ss_pred cCCCCccceecccccccccCcccc-cccCcccCccceeeccccccCCCcCCCeEEEEEecc
Q 019671 94 QSGKGKHKVHSHFDRALESGPYTL-KYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (337)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 153 (337)
+++........ ...+ .....+|||.+|++|++|.+..++.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98332211111 1122 244689999999999999866558999999999874
No 19
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.83 E-value=1.4e-20 Score=142.55 Aligned_cols=107 Identities=38% Similarity=0.557 Sum_probs=94.2
Q ss_pred HHHhhhcCCCCCeEEEeC-CeEEeeehHHHHhcCHHHHHHhccc-ccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCc-
Q 019671 178 LKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGL-VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDV- 254 (337)
Q Consensus 178 ~~~~~~~~~~~Dv~~~v~-~~~~~ahk~iLa~~S~~F~~~~~~~-~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~- 254 (337)
|++++.++.++|++|.++ +++|+|||.+|+++||||+.+|.++ +.+.+..++.++++++++|+.+|+|+|++.....
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 467778899999999999 7999999999999999999999887 5666666899999999999999999999998776
Q ss_pred ccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 019671 255 YEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 296 (337)
. +++.+++.+|++|+++.|+..|+++|.+.
T Consensus 81 ~------------~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 D------------ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp T------------TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 4 68999999999999999999999999763
No 20
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.82 E-value=3.6e-20 Score=146.05 Aligned_cols=147 Identities=25% Similarity=0.346 Sum_probs=125.1
Q ss_pred CchhhhHHHhhhcCCCCCeEEEeCC---eEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhcc
Q 019671 172 SDMGQGLKDLLESEIGCDIVFEVGD---ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYT 248 (337)
Q Consensus 172 ~~~~~~~~~~~~~~~~~Dv~~~v~~---~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~ 248 (337)
+.++.-...+++...++|++|.++| +.++|||++||+||.+..- .+. ....+.+..+.|+++++|..+++||||
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~-~dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANG-GDEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh--ccC-CCcchhhhcccccCHHHHHHhheeeec
Confidence 3455556678889999999999984 6799999999999998762 222 122235678899999999999999999
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCc
Q 019671 249 DKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATP 328 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 328 (337)
+++.+-.+ ...+.+++++|.+|+++-|+.+|++.+...+..+||+.++++|++.++.+|...|.+.|+
T Consensus 128 DEidfk~d----------D~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA-- 195 (280)
T KOG4591|consen 128 DEIDFKED----------DEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA-- 195 (280)
T ss_pred cccccccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 99987653 378999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhh
Q 019671 329 ANLGG 333 (337)
Q Consensus 329 ~~~~~ 333 (337)
.++..
T Consensus 196 ~~W~d 200 (280)
T KOG4591|consen 196 GAWDD 200 (280)
T ss_pred hhccc
Confidence 55543
No 21
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=2e-19 Score=159.59 Aligned_cols=156 Identities=31% Similarity=0.428 Sum_probs=139.6
Q ss_pred ccCCCCchhhhHHHhhhcCCCCCeEEEeCC-----eEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHH
Q 019671 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGD-----ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKA 241 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~v~~-----~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~ 241 (337)
.+.+..++......++.+...+|+.|+|++ ++++|||.+||..|.+|.+||++++.+....+|.++|+.|.+|..
T Consensus 94 wq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~ 173 (521)
T KOG2075|consen 94 WQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLA 173 (521)
T ss_pred cccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHH
Confidence 345566777778888899999999999974 689999999999999999999999999878899999999999999
Q ss_pred HhhhhccCCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHH-HHhCCChHHHHH
Q 019671 242 MLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLAL-AEQHQCPQLKAI 320 (337)
Q Consensus 242 ~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~-A~~~~~~~L~~~ 320 (337)
+|+|||++...... +++..+|.+|++|.++.|.+.|.++|...+...|....|-- |..++-++|...
T Consensus 174 ~L~flYsdev~~~~------------dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~ 241 (521)
T KOG2075|consen 174 FLRFLYSDEVKLAA------------DTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISI 241 (521)
T ss_pred HHHHHhcchhhhhH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHH
Confidence 99999999988776 89999999999999999999999999998888876655544 999999999999
Q ss_pred HHHhccCcCChhhhhc
Q 019671 321 CLKFAATPANLGGACC 336 (337)
Q Consensus 321 ~~~~i~~~~~~~~i~~ 336 (337)
|++-|. .+++..+.
T Consensus 242 c~e~id--~~~~~al~ 255 (521)
T KOG2075|consen 242 CLEVID--KSFEDALT 255 (521)
T ss_pred HHHHhh--hHHHhhhC
Confidence 999998 88776553
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.75 E-value=4.2e-18 Score=130.59 Aligned_cols=113 Identities=32% Similarity=0.573 Sum_probs=89.2
Q ss_pred EcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEEEEEEEEEeecCCCC
Q 019671 25 VKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVRALFELTLVDQSGKG 98 (337)
Q Consensus 25 I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~------~~~~~~~~~~~~l~~~~~~~ 98 (337)
|.||+.++ ..+..+.|+.|.++|++|+|.+||+|+ ++ ++++||.|.. ..|++.+++++.+++++|..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~-~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN----GK-YLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES----TT-EEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC----cC-cEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999887 223345569999999999999999987 33 9999999983 38999999999999998775
Q ss_pred ccceecccccccccCcccccccCcccCccceeeccccccCCCcCCCeEEEEEecce
Q 019671 99 KHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154 (337)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~i 154 (337)
...... .+.|.. ..+|||.+|++|++|.+.+|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 134432 3789999999999998766899999999999875
No 23
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.73 E-value=1.3e-17 Score=120.82 Aligned_cols=90 Identities=40% Similarity=0.616 Sum_probs=83.8
Q ss_pred CeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCccchHH
Q 019671 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 268 (337)
Q Consensus 189 Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 268 (337)
|+++.++|++|++||.+|+++|+||++||.+++.+.....+.+++.++++|+.+|+|+|++...... .
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~------------~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE------------E 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH------------H
Confidence 7899999999999999999999999999998877777788999999999999999999999887765 6
Q ss_pred HHHHHHHHhhccChhHHHHHHH
Q 019671 269 MVQHLLAAADLYNVDRLKLLCE 290 (337)
Q Consensus 269 ~~~~ll~~A~~~~~~~l~~~ce 290 (337)
++.+++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999985
No 24
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.73 E-value=3.1e-18 Score=160.26 Aligned_cols=142 Identities=24% Similarity=0.322 Sum_probs=121.3
Q ss_pred CCCCeEEEe-CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhc-cCCCCCcccccCCCCc
Q 019671 186 IGCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIY-TDKFPDVYEITGTTSM 263 (337)
Q Consensus 186 ~~~Dv~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY-~~~~~~~~~~~~~~~~ 263 (337)
..-|+.|.. +|+.+.|||++|++|++||..||..-+.|++.-.+..-.+..+.+..+|+|+| ++......+..
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~----- 783 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLK----- 783 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccc-----
Confidence 445677776 55669999999999999999999998889887556665667999999999999 45444332211
Q ss_pred cchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhhhhc
Q 019671 264 CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACC 336 (337)
Q Consensus 264 ~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~~ 336 (337)
..+.+.++|.+||.|.+.+|+..||..|.+.++..++..+|++|..|+++.|+..|++||| .|+..+++
T Consensus 784 --~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Le 852 (1267)
T KOG0783|consen 784 --ESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLE 852 (1267)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHH
Confidence 1378999999999999999999999999999999999999999999999999999999999 99988764
No 25
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.72 E-value=3.4e-17 Score=128.61 Aligned_cols=132 Identities=21% Similarity=0.398 Sum_probs=97.2
Q ss_pred eEEEEEEcccccccC-CCCCCeeeeccceec-CeeEEEEEEcCCCCC-CCCCceEEEEEEecCC------CceE-EEEEE
Q 019671 19 GSHQFTVKGYSLAKG-MGPGKCLSSDVFTVG-GYDWAIYFYPDGKNP-EDGALYVSVFIALASE------GTDV-RALFE 88 (337)
Q Consensus 19 ~~~~w~I~~fs~~~~-~~~~~~~~S~~f~~~-g~~W~l~~~p~g~~~-~~~~~~lsl~L~~~~~------~~~~-~~~~~ 88 (337)
..++|+|.||+.+.+ ...+..++||+|... ||..++++|+||++. +.+. |+|||+++..+ .||+ .-+++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~-~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGN-YTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCC-EEEEEEEEecccCCCcccCCCcCCEEE
Confidence 468999999986543 246779999999874 999999999999875 4455 99999999854 6995 67999
Q ss_pred EEEeecCCCCccceecccccccccCc----------ccc--------------cccCcccCccceeeccccccCCCcCCC
Q 019671 89 LTLVDQSGKGKHKVHSHFDRALESGP----------YTL--------------KYRGSMWGYKRFFKRTSLETSDYIKDD 144 (337)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------------~~~~~~~G~~~fi~~~~L~~~~~l~~d 144 (337)
|.|+||+.+.....+. .+++++.+ ..| ..++.++||+.|++++.|+.++|+.||
T Consensus 81 l~llDQ~~~~~~r~~~--~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSS--SRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhcccc--ceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCC
Confidence 9999997422211111 01111110 001 124668999999999999999999999
Q ss_pred eEEEEEecc
Q 019671 145 CLLINCTVG 153 (337)
Q Consensus 145 ~l~i~~~v~ 153 (337)
++.|..+++
T Consensus 159 tlfI~~~~~ 167 (167)
T cd03783 159 DLIIFVDFE 167 (167)
T ss_pred eEEEEEecC
Confidence 999988763
No 26
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.71 E-value=7.2e-17 Score=125.98 Aligned_cols=134 Identities=20% Similarity=0.366 Sum_probs=98.6
Q ss_pred eeEEEEEEcccccccC-CCCCCeeeeccce-ecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC------CceEE-EEEE
Q 019671 18 NGSHQFTVKGYSLAKG-MGPGKCLSSDVFT-VGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR-ALFE 88 (337)
Q Consensus 18 ~~~~~w~I~~fs~~~~-~~~~~~~~S~~f~-~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~~~~~-~~~~ 88 (337)
+..++|+|.||+.+.+ .+.+..++||+|. ..||+.++++|+||.+.+ +. |||||+++..+ .||+. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~-~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PG-NLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CC-EEEEEEEEeccCCCccccCCCcCCeEE
Confidence 3569999999987544 3567799999996 469999999999999865 45 99999999854 69998 8999
Q ss_pred EEEeecCCCCccceecc----cccccccC---cc-----------------cccccCcccCccceeeccccccCCCcCCC
Q 019671 89 LTLVDQSGKGKHKVHSH----FDRALESG---PY-----------------TLKYRGSMWGYKRFFKRTSLETSDYIKDD 144 (337)
Q Consensus 89 ~~l~~~~~~~~~~~~~~----~~~~~~~~---~~-----------------~~~~~~~~~G~~~fi~~~~L~~~~~l~~d 144 (337)
|.|+||+.+.....+.. +.....+. .+ +.-+++.++||+.|++++.|+.++|+.||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 99999974222211111 11111111 11 00123678999999999999999999999
Q ss_pred eEEEEEecc
Q 019671 145 CLLINCTVG 153 (337)
Q Consensus 145 ~l~i~~~v~ 153 (337)
++.|-.+++
T Consensus 159 ~ifi~~~~e 167 (167)
T cd03782 159 DVIFLLTME 167 (167)
T ss_pred eEEEEEecC
Confidence 999877653
No 27
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.64 E-value=7.6e-16 Score=134.00 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=131.1
Q ss_pred HHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEec----CCCHHHHHHHhhhhccCCCCC
Q 019671 178 LKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK----DVEPSIFKAMLLFIYTDKFPD 253 (337)
Q Consensus 178 ~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~----~~~~~~f~~~L~~iY~~~~~~ 253 (337)
+..++.+++.+||.+.+-|.+.+.||..|. +|+||.+||.|.++|++...|.++ .++.++|...+.-+|.+++.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 456777899999999999999999999986 899999999999999999887653 589999999999999999998
Q ss_pred cccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhh
Q 019671 254 VYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGG 333 (337)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 333 (337)
.. +.+..+|++|..++++.|.++|.+.+++.++++++...++.|.+|+++.+++.|++.+. .|+-.
T Consensus 139 ~l------------~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 139 KL------------SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred cH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 76 79999999999999999999999999999999999999999999999999999999998 77655
Q ss_pred h
Q 019671 334 A 334 (337)
Q Consensus 334 i 334 (337)
+
T Consensus 205 i 205 (488)
T KOG4682|consen 205 I 205 (488)
T ss_pred h
Confidence 4
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.58 E-value=1.1e-14 Score=106.79 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=70.8
Q ss_pred EEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC-----CCceEEEEEEEEEeecC
Q 019671 21 HQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-----EGTDVRALFELTLVDQS 95 (337)
Q Consensus 21 ~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~-----~~~~~~~~~~~~l~~~~ 95 (337)
++|+|+||+.+ +.|+.+.|++|.++|++|+|.+||++ + |+|+||.|.. ..|++.|+++++|++++
T Consensus 2 ~~~~~~~~~~~---~~~~~~~S~~f~~~g~~W~i~~~p~~------~-~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRL---EEGESYFSPSEEHFNIPWRLKIYRKN------G-FLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhc---ccCceEeCChhEEcCceeEEEEEEcC------C-EEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 57999999876 34789999999999999999999982 3 9999999972 26999999999999999
Q ss_pred CCCccceecccccccccCcccccccCcccCcccee
Q 019671 96 GKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130 (337)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi 130 (337)
|+.... ...+.|.. ..+|||..|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 11345544 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=123.44 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=169.5
Q ss_pred EEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecCC-CceEEEEEEEEEeecCCCCc-c
Q 019671 23 FTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 100 (337)
Q Consensus 23 w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-~~~~~~~~~~~l~~~~~~~~-~ 100 (337)
|.|.+|+... ..++|..|..+|-.|++.+||.|+ ++++|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 8899987664 577899999999999999999985 57888877643 89999999999999975422 1
Q ss_pred ceecccccccccCccccccc--CcccCccceeeccccccCCCcCCCeEEEEEecceeccccCCCCCccccCCCCchhhhH
Q 019671 101 KVHSHFDRALESGPYTLKYR--GSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGL 178 (337)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 178 (337)
.... +...+..+ ...||+..+++...+. .|.
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~------------~~~--------------------------- 108 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLI------------DCS--------------------------- 108 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhh------------ccc---------------------------
Confidence 0000 00111111 2334443333222111 110
Q ss_pred HHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCccccc
Q 019671 179 KDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEIT 258 (337)
Q Consensus 179 ~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~ 258 (337)
++.+.+|+.++++++++|+.++..+..+.....+.+.+..++.++.+..|+|........
T Consensus 109 -----------------~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~--- 168 (297)
T KOG1987|consen 109 -----------------NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSV--- 168 (297)
T ss_pred -----------------CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHH---
Confidence 556999999999999999999987766666666788899999999999999997766543
Q ss_pred CCCCccchHHHHH---HHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhhhh
Q 019671 259 GTTSMCTTTNMVQ---HLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGAC 335 (337)
Q Consensus 259 ~~~~~~~~~~~~~---~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~ 335 (337)
.... .++..|++++...++..|+..++..++..++...++.|..+++..+...|+.++....++..+.
T Consensus 169 ---------~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 169 ---------ERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred ---------HHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 3333 7888999999999999999999999899999999999999999999999999998544665543
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-10 Score=109.41 Aligned_cols=124 Identities=23% Similarity=0.422 Sum_probs=98.7
Q ss_pred ceeeEEEEEEcccccccCCCCCCeeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC--------CCceEEEEE
Q 019671 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS--------EGTDVRALF 87 (337)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~--------~~~~~~~~~ 87 (337)
...-++.|+|.+|+.+.. ...||+|.+||++|+|.++|.|++.. .+++||+... ..|.|.|+|
T Consensus 36 ~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~nq~----~~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 36 LLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNNQC----NVSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCCcc----ccEEEEEeccchhhhhcCcchhhhhhe
Confidence 346789999999998854 67899999999999999999998644 3799999872 238999999
Q ss_pred EEEEeecCCCCccceecccccccccCcccccccCcccCccceeeccccc-----cCCCcCCCeEEEEEecceec
Q 019671 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE-----TSDYIKDDCLLINCTVGVVR 156 (337)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~-----~~~~l~~d~l~i~~~v~i~~ 156 (337)
-|.|-++....... .++..|.|......|||..|+....|. ...|+.+|++.|++.|.|.+
T Consensus 107 af~Is~p~~pti~~--------iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 107 AFDISNPKYPTIEY--------INKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred eeecCCCCCCchhh--------hhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEe
Confidence 99998876422211 122347888889999999999887774 23478899999999999997
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.02 E-value=6e-10 Score=105.59 Aligned_cols=85 Identities=32% Similarity=0.513 Sum_probs=66.6
Q ss_pred CCCCchhhhHHHhhhcC----CCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCC------------CCCcEEec
Q 019671 169 VPPSDMGQGLKDLLESE----IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR------------NLDKVVVK 232 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~----~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~------------~~~~i~l~ 232 (337)
.+.+.+...|..++... .+.||+|.||++.|+|||+||++||++|+++|......+ ....|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 34455667777777543 678999999999999999999999999999996432221 12346689
Q ss_pred CCCHHHHHHHhhhhccCCCCC
Q 019671 233 DVEPSIFKAMLLFIYTDKFPD 253 (337)
Q Consensus 233 ~~~~~~f~~~L~~iY~~~~~~ 253 (337)
++.|..|+.+|+||||+..-.
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~ 636 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLS 636 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccC
Confidence 999999999999999996433
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.72 E-value=1.5e-08 Score=84.55 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=93.1
Q ss_pred CchhhhHHHhhhcC-CCCCeEEEeC-C--------------eEEeeehHHHHhcCHHHHHHhcccccCCC---------C
Q 019671 172 SDMGQGLKDLLESE-IGCDIVFEVG-D--------------ETFKAHKLILAARSPVFRAQFYGLVGDRN---------L 226 (337)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~Dv~~~v~-~--------------~~~~ahk~iLa~~S~~F~~~~~~~~~e~~---------~ 226 (337)
..+..+++.++... .+.|+.+.+. | +++.|||.|.++||++|+.++.....++. .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 45566677776644 4445555542 2 46999999999999999999975444332 2
Q ss_pred CcEEecC-CCHHHHH-HHhhhhccCCCCCcccccCCCC----------------ccchHHHHHHHHHHhhccChhHHHHH
Q 019671 227 DKVVVKD-VEPSIFK-AMLLFIYTDKFPDVYEITGTTS----------------MCTTTNMVQHLLAAADLYNVDRLKLL 288 (337)
Q Consensus 227 ~~i~l~~-~~~~~f~-~~L~~iY~~~~~~~~~~~~~~~----------------~~~~~~~~~~ll~~A~~~~~~~l~~~ 288 (337)
.+|.+.+ +-|..|. .+|.++||+.+..+......++ .+.....+.+|+++|..|.++-|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 4566665 7899999999887643322221 13446788899999999999999999
Q ss_pred HHHHHhccCChhhHHHH
Q 019671 289 CESKLCEELNAETVATT 305 (337)
Q Consensus 289 ce~~l~~~i~~~n~~~~ 305 (337)
|++.+.+....++....
T Consensus 380 ~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHhhhhhhccccc
Confidence 99999887665554433
No 33
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.37 E-value=7.3e-07 Score=78.04 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=96.5
Q ss_pred eEEeeehHHHHhcCHHHHHHhcccccCCCC----CcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCccchHHHHHH
Q 019671 197 ETFKAHKLILAARSPVFRAQFYGLVGDRNL----DKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQH 272 (337)
Q Consensus 197 ~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~----~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (337)
.+++||..++. |.+||..||.|++.|++. +...++.....+.+..|+|+|++...+.. +.+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~------------~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF------------DVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH------------HHHhh
Confidence 35999999986 889999999999998542 22456777889999999999999998876 68889
Q ss_pred HHHHhhccChh--H-HHHHHHHHHhc---cCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhhhh
Q 019671 273 LLAAADLYNVD--R-LKLLCESKLCE---ELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGAC 335 (337)
Q Consensus 273 ll~~A~~~~~~--~-l~~~ce~~l~~---~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~ 335 (337)
++..|+++.+. . |+...--.|.+ .++.-++..++..|-......|...+-.|+. .++..++
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~ 434 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLL 434 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhc
Confidence 99999988654 2 44444433443 2455678889999988888899988888888 7766554
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.29 E-value=5.9e-06 Score=69.00 Aligned_cols=96 Identities=22% Similarity=0.348 Sum_probs=80.1
Q ss_pred eEEEeCCeEEeeehHHHHhcCHHHHHHhccccc-CC-CCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCccchH
Q 019671 190 IVFEVGDETFKAHKLILAARSPVFRAQFYGLVG-DR-NLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTT 267 (337)
Q Consensus 190 v~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~-e~-~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~ 267 (337)
|.+.|||..|..+|.-|.-...+|++|+..++. +. .+..|- -|=+|..|..+|+||-.|.++.+. +.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-IDRSpKHF~~ILNfmRdGdv~LPe----------~~ 75 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-IDRSPKHFDTILNFMRDGDVDLPE----------SE 75 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-ecCChhHHHHHHHhhhcccccCcc----------ch
Confidence 568899999999999999999999999987753 22 223344 467999999999999988887554 25
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 019671 268 NMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (337)
Q Consensus 268 ~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 296 (337)
..+.+|++=|..|.++.|.+.|+..|...
T Consensus 76 kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 76 KELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 78999999999999999999999977654
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.29 E-value=6.8e-07 Score=74.92 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=78.4
Q ss_pred CCCCchhhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCC--CCCcEEecCCCHHHHHHHhhhh
Q 019671 169 VPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR--NLDKVVVKDVEPSIFKAMLLFI 246 (337)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~--~~~~i~l~~~~~~~f~~~L~~i 246 (337)
.+..++.+++....+..-..|+-|+.....|+|||.+|++|||+|+.+.+..-... ....+..-+++-+.|.++|+++
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 34567888888887777888999999999999999999999999999886532111 1233667789999999999999
Q ss_pred ccCCCCCcccccCCCCccchHHHHHHHHHHhhccCh
Q 019671 247 YTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNV 282 (337)
Q Consensus 247 Y~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~ 282 (337)
|+++.-.... .-.++.-|-+++..|+.
T Consensus 192 ~tgEfgmEd~---------~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 192 ITGEFGMEDL---------GFQNSDILEQLCEDFGC 218 (401)
T ss_pred Hhcccchhhc---------CCchHHHHHHHHHhhCC
Confidence 9998754431 11345556666666664
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.99 E-value=7e-06 Score=59.73 Aligned_cols=88 Identities=24% Similarity=0.414 Sum_probs=65.0
Q ss_pred eEEEeCCeEEeeehHHHH-hcCHHHHHHhccc---ccCCCCCcEEecCCCHHHHHHHhhhhcc-CCCCCcccccCCCCcc
Q 019671 190 IVFEVGDETFKAHKLILA-ARSPVFRAQFYGL---VGDRNLDKVVVKDVEPSIFKAMLLFIYT-DKFPDVYEITGTTSMC 264 (337)
Q Consensus 190 v~~~v~~~~~~ahk~iLa-~~S~~F~~~~~~~---~~e~~~~~i~l~~~~~~~f~~~L~~iY~-~~~~~~~~~~~~~~~~ 264 (337)
|.|.|||+.|.+.+..|. ....+|.+|+.+. ........+-| |-+|..|+.+|+|+.+ +.++.+.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~--------- 70 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD--------- 70 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T---------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC---------
Confidence 679999999999999998 5556899998754 22333445544 6899999999999999 5666542
Q ss_pred chHHHHHHHHHHhhccChhHH-HHHH
Q 019671 265 TTTNMVQHLLAAADLYNVDRL-KLLC 289 (337)
Q Consensus 265 ~~~~~~~~ll~~A~~~~~~~l-~~~c 289 (337)
......+++-|+.|+++.+ ++.|
T Consensus 71 --~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 71 --EICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp --TS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred --chhHHHHHHHHHHcCCCccccCCC
Confidence 1467899999999999998 7665
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.36 E-value=0.0016 Score=45.95 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=61.2
Q ss_pred eEEEe-CCeEEeeehHHHHhcCHHHHHHhcccc--cCCCCCcEEecCCCHHHHHHHhhhh-----ccCC-CCCcccccCC
Q 019671 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLV--GDRNLDKVVVKDVEPSIFKAMLLFI-----YTDK-FPDVYEITGT 260 (337)
Q Consensus 190 v~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~--~e~~~~~i~l~~~~~~~f~~~L~~i-----Y~~~-~~~~~~~~~~ 260 (337)
|+++. +|.+|-..|. +|.-|+-.++||.|+. .++..+++.+.+++...++.+.+|+ |++. ..++.
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPe----- 92 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPE----- 92 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCC-----
Confidence 34444 4456666664 5778999999998765 4566788999999999999999887 4443 22221
Q ss_pred CCccchHHHHHHHHHHhhccC
Q 019671 261 TSMCTTTNMVQHLLAAADLYN 281 (337)
Q Consensus 261 ~~~~~~~~~~~~ll~~A~~~~ 281 (337)
.+...+.+.+||.+|+.+.
T Consensus 93 --F~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 93 --FDIPPEMALELLMAANYLE 111 (112)
T ss_pred --CCCCHHHHHHHHHHhhhhc
Confidence 1245699999999999875
No 38
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.96 E-value=0.0005 Score=60.72 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=69.9
Q ss_pred hhhhHHHhhhcC---CCCCeEEEe-CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccC
Q 019671 174 MGQGLKDLLESE---IGCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTD 249 (337)
Q Consensus 174 ~~~~~~~~~~~~---~~~Dv~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~ 249 (337)
...++..++.+. -..|+++.. .|..|-|||.+|++||.+|...+..-+ ....+|+-..+-+.+|..+|+|+|-+
T Consensus 133 ~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 133 PAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred cchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHh
Confidence 345566666554 336888877 456688999999999998865543221 13345665667899999999999987
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHH
Q 019671 250 KFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCE 290 (337)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce 290 (337)
.-..- .+....|+.+..+|+++.+....+
T Consensus 211 ~na~~------------~~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 211 TNAEW------------KDQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhhh------------hhHHHHHHhhhhhccHHHhHHHHh
Confidence 32221 244578888888888766654443
No 39
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.89 E-value=0.0038 Score=54.70 Aligned_cols=116 Identities=12% Similarity=0.218 Sum_probs=86.6
Q ss_pred eEEeeehHHHHhcCHHHHHHhccccc-CCCCCcEEec-CCCHHHHHHHhhhhccCCCCCcccccCCCCccchHHHHHHHH
Q 019671 197 ETFKAHKLILAARSPVFRAQFYGLVG-DRNLDKVVVK-DVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLL 274 (337)
Q Consensus 197 ~~~~ahk~iLa~~S~~F~~~~~~~~~-e~~~~~i~l~-~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ll 274 (337)
+.|.+.+.+|...=+||+..+..... .....+|+|. .-+..+|+-+++|+.+..-.++. .++..+|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~------------~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP------------SNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc------------CcEEEeE
Confidence 56999999999999999999965221 2223446655 46889999999999996555544 7999999
Q ss_pred HHhhccChhHHHHHHHHHHhccCC----------hhhHHHHHHHHHhCCChHHHHHHHHh
Q 019671 275 AAADLYNVDRLKLLCESKLCEELN----------AETVATTLALAEQHQCPQLKAICLKF 324 (337)
Q Consensus 275 ~~A~~~~~~~l~~~ce~~l~~~i~----------~~n~~~~l~~A~~~~~~~L~~~~~~~ 324 (337)
.-|+.++|+.|.+.|-.|+.++++ --|---+..+|+.+.-.+|..+-++.
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~~l~l 141 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAAFLRL 141 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHhhhhh
Confidence 999999999999999999866432 11233456778888777776654444
No 40
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.88 E-value=0.0053 Score=45.40 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred eEEEe-CCeEEeeehHHHHhcCHHHHHHhcccccCC-CCCcEEecCCCHHHHHHHhhhhccCCCCCcccc-----cCC--
Q 019671 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDR-NLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEI-----TGT-- 260 (337)
Q Consensus 190 v~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~-~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~-----~~~-- 260 (337)
++|+. +|.+|.+.+.+. ..|+.++.|+.+...+. ....|++++++..+++.+++|++...-...... ...
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 678899999876 69999999996533222 225799999999999999999986432211100 000
Q ss_pred CCccchHHHHHHHHHHhhccCh
Q 019671 261 TSMCTTTNMVQHLLAAADLYNV 282 (337)
Q Consensus 261 ~~~~~~~~~~~~ll~~A~~~~~ 282 (337)
+......+.+.+|+.||+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 0012345789999999998864
No 41
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.79 E-value=0.0052 Score=55.46 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCeEEEeCCeEEeeehHHHHhcC--HHHHHHhcccccCCC-CCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCcc
Q 019671 188 CDIVFEVGDETFKAHKLILAARS--PVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 264 (337)
Q Consensus 188 ~Dv~~~v~~~~~~ahk~iLa~~S--~~F~~~~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~ 264 (337)
.-|.|.|||+.|.-.+.-|+-.. .+|.+++.+.+.-.. .....+-|=+|+.|..+|+|+-|++++...
T Consensus 11 ~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g--------- 81 (465)
T KOG2714|consen 11 DRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG--------- 81 (465)
T ss_pred ceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc---------
Confidence 35779999999999999997655 699999987664332 222455578999999999999999999864
Q ss_pred chHHHHHHHHH-HhhccChhHHHH---HHHHH
Q 019671 265 TTTNMVQHLLA-AADLYNVDRLKL---LCESK 292 (337)
Q Consensus 265 ~~~~~~~~ll~-~A~~~~~~~l~~---~ce~~ 292 (337)
.....+|. =|.+|++..|.+ .|+..
T Consensus 82 ---~~~~~llhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 82 ---VFPERLLHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred ---CchhhhhhhhhhhcCcHHHHHHhhcCccc
Confidence 23444444 899999998876 45544
No 42
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.73 E-value=0.0088 Score=39.54 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=43.3
Q ss_pred eEEEe-CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhcc
Q 019671 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYT 248 (337)
Q Consensus 190 v~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~ 248 (337)
++|+. +|+.|.+.+.++. .|+.++.|+.+...+.. .|++++++..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 44554 6788999998765 99999999965433322 799999999999999999873
No 43
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.62 E-value=0.0073 Score=49.73 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=75.1
Q ss_pred CeEEEeCCeEEeeehHHHHhcCH--HHHHHhccc--ccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCcc
Q 019671 189 DIVFEVGDETFKAHKLILAARSP--VFRAQFYGL--VGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMC 264 (337)
Q Consensus 189 Dv~~~v~~~~~~ahk~iLa~~S~--~F~~~~~~~--~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~ 264 (337)
=|.+.++|+.|-.-..-|.-|-| -..+||.+. +.+...+-..+-|-+|.-|+.+|.|+-.|.++...+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~-------- 81 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSD-------- 81 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCC--------
Confidence 46788999999888888877766 678888653 333344446677889999999999999999987663
Q ss_pred chHHHHHHHHHHhhccChhHHHHHHHH
Q 019671 265 TTTNMVQHLLAAADLYNVDRLKLLCES 291 (337)
Q Consensus 265 ~~~~~~~~ll~~A~~~~~~~l~~~ce~ 291 (337)
....++|+.|+.|++-+|++..|+
T Consensus 82 ---i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 82 ---IDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred ---ccHHHHHHHhhHHhhHhHHhHHhh
Confidence 578999999999999999999988
No 44
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.032 Score=44.45 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCccc-c----cCCC--------
Q 019671 195 GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYE-I----TGTT-------- 261 (337)
Q Consensus 195 ~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~-~----~~~~-------- 261 (337)
+|+.|.+-..+. ..|..+.+++...--......|+|+.++..+|..+++|++.-..+.... . ....
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 677788877654 5788888887432111111579999999999999999999844321100 0 0000
Q ss_pred CccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHH
Q 019671 262 SMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLA 307 (337)
Q Consensus 262 ~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~ 307 (337)
.......++.+|+.+|++++++.|...|++.+..++.-++.-++..
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~ 137 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIRE 137 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 1123356899999999999999999999999888765555444433
No 45
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0061 Score=63.56 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=83.0
Q ss_pred eeeeccceecCeeEEEEEEcCCCCCCCCCceEEEEEEecC-C---CceEEEEEEEEEeecCCCCccceecccccccccCc
Q 019671 39 CLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS-E---GTDVRALFELTLVDQSGKGKHKVHSHFDRALESGP 114 (337)
Q Consensus 39 ~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
...||.|..|+..|++.+.|+++. .+.+++|+.|.. + .|.+.+++.+.+.| ..+...... .+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~-~~~~~~~~~-------~~~~ 109 (1093)
T KOG1863|consen 42 RALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKN-TIDNLPDPE-------KAIH 109 (1093)
T ss_pred HhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhcccc-CCCCchhhh-------hhhh
Confidence 456899999999999999999873 226899999982 2 38999999999999 333332111 1123
Q ss_pred ccccccCcccCccceeeccccc--cCCCcCCCeEEEEEecceec
Q 019671 115 YTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (337)
Q Consensus 115 ~~~~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 156 (337)
+.|......||+..|+.|+++. ..+|+.+|++.+++.|.+..
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 153 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQ 153 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccceeeeeeeeeec
Confidence 6677778899999999999996 67899999999999998886
No 46
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.43 E-value=0.01 Score=54.70 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=64.7
Q ss_pred ceeeEEEEEEcccccccC---CCCCCeeeeccce--ecCeeEEEEEEcCCCCCCCCCceEEEEEEecC------CCceEE
Q 019671 16 TVNGSHQFTVKGYSLAKG---MGPGKCLSSDVFT--VGGYDWAIYFYPDGKNPEDGALYVSVFIALAS------EGTDVR 84 (337)
Q Consensus 16 ~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~------~~~~~~ 84 (337)
...++..|+|.+|...+. ...+..+.|+.|. ..||.-+.++|-||++.+.+. ++|+|+.... -.|+..
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~-~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGT-HLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcc-eeeeeeeecccCcccccccCCC
Confidence 347899999999954433 2445688899997 469999999999999888887 9999998873 369999
Q ss_pred EEEEEEEeec
Q 019671 85 ALFELTLVDQ 94 (337)
Q Consensus 85 ~~~~~~l~~~ 94 (337)
-++++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 47
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.17 Score=37.94 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=75.7
Q ss_pred CeEEEe-CCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCC------
Q 019671 189 DIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTT------ 261 (337)
Q Consensus 189 Dv~~~v-~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~------ 261 (337)
-+.++. +|+.|.+.+ ..|-||-..+.|+... .+.. -.++++.+...+|+.+++|+-...-....+....+
T Consensus 3 ~i~l~s~dge~F~vd~-~iAerSiLikN~l~d~-~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDE-NIAERSILIKNMLCDS-TACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehH-HHHHHHHHHHHHhccc-cccC-CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 345554 667787776 4577888888876321 1111 23677899999999999999766554443322110
Q ss_pred ---C----ccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhH
Q 019671 262 ---S----MCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETV 302 (337)
Q Consensus 262 ---~----~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~ 302 (337)
+ ++...+++.++..+|+++.++.|.+.|++.+...+...+.
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 0 1334578889999999999999999999988776655444
No 48
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.98 E-value=0.023 Score=50.34 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=100.3
Q ss_pred CeEEEeCCeEEeeehHHHHhcCHHHHHHhcccccCCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCccchHH
Q 019671 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSMCTTTN 268 (337)
Q Consensus 189 Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 268 (337)
|..+...+..+.+|+.+|...|+.|..+....-..+....+.+..+....+..+.+++|.. +.... ...
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e----------~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHE----------MVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhH----------HHH
Confidence 4444456667999999999999999988765533344455778888999999999999988 32221 246
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhc-cCChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 269 MVQHLLAAADLYNVDRLKLLCESKLCE-ELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 269 ~~~~ll~~A~~~~~~~l~~~ce~~l~~-~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
....++.+...|.++..+..|...+.. .++..++...+..+..+....|...+...+.
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~ 155 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM 155 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 677788888889999999999887776 5688899999999999999999988887776
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.02 E-value=0.58 Score=36.95 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCeEEEeCCeEEeeehHHHHhcCHHHHHHh-ccccc---CCCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCCc
Q 019671 188 CDIVFEVGDETFKAHKLILAARSPVFRAQF-YGLVG---DRNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTSM 263 (337)
Q Consensus 188 ~Dv~~~v~~~~~~ahk~iLa~~S~~F~~~~-~~~~~---e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~~ 263 (337)
.=|.|.|||..|..-|.-|..-+.-|-..| ...+. .....---+-|-+|.-|..+|+|+-.|.+.+..
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-------- 92 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-------- 92 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--------
Confidence 346778999999999999998886665555 33211 112222446678999999999999999987654
Q ss_pred cchHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 019671 264 CTTTNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (337)
Q Consensus 264 ~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 296 (337)
-.-..+|+-|+.|.++.|+++..+.|...
T Consensus 93 ----l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 93 ----LSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ----hhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 23457888999999999999988887764
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.56 E-value=0.34 Score=33.60 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHhccCC---hhhHHHHHHHHHhCCC
Q 019671 267 TNMVQHLLAAADLYNVDRLKLLCESKLCEELN---AETVATTLALAEQHQC 314 (337)
Q Consensus 267 ~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~---~~n~~~~l~~A~~~~~ 314 (337)
...+.+|+.+|++++++.|.+.|.+.+...+. ++-+..++.+...+.-
T Consensus 13 ~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 13 NDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 47899999999999999999999999877654 4445555555555443
No 51
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=89.14 E-value=0.27 Score=35.50 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=14.4
Q ss_pred HHHHHhhccChhHHHHHHHHHHhc
Q 019671 272 HLLAAADLYNVDRLKLLCESKLCE 295 (337)
Q Consensus 272 ~ll~~A~~~~~~~l~~~ce~~l~~ 295 (337)
+++.+|+.|+.+.|...|.+++.+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHH
Confidence 345556666666666666666654
No 52
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=77.01 E-value=6.6 Score=33.05 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCCe-EEEeCCeEEeeehH-HHHhcCHHHHHHhcccccC--CCCCcEEecCCCHHHHHHHhhhhccCCCCCcccccCCCC
Q 019671 187 GCDI-VFEVGDETFKAHKL-ILAARSPVFRAQFYGLVGD--RNLDKVVVKDVEPSIFKAMLLFIYTDKFPDVYEITGTTS 262 (337)
Q Consensus 187 ~~Dv-~~~v~~~~~~ahk~-iLa~~S~~F~~~~~~~~~e--~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~~~ 262 (337)
..|+ .+.|||..|..-.. +.+-.-....+||.+...- .......| |=+-..|+.+|+|+-+..+..+.+
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~------ 79 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED------ 79 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh------
Confidence 3444 45577765554333 3344445666777652211 11122222 456678999999999955544431
Q ss_pred ccchHHHHHHHHHHhhccChhHHHHHHHHH
Q 019671 263 MCTTTNMVQHLLAAADLYNVDRLKLLCESK 292 (337)
Q Consensus 263 ~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~ 292 (337)
..+...|...|+.|+++.+...+.+.
T Consensus 80 ----f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 80 ----FAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred ----hhhHHHHHHHHHHHccccHHHHHhcc
Confidence 26788999999999999877766553
No 53
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=74.90 E-value=3.3 Score=29.87 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 302 VATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 302 ~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
|+.++.+|..|++..|.+.|.+||.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~ 25 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA 25 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH
Confidence 4567777777777777777777764
No 54
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=73.15 E-value=0.87 Score=40.27 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.7
Q ss_pred ccCChhhHHHHHHHHHhCCChHHHHHHHHhccCcCChhhhhcC
Q 019671 295 EELNAETVATTLALAEQHQCPQLKAICLKFAATPANLGGACCS 337 (337)
Q Consensus 295 ~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~~s 337 (337)
..+++.|++.+|.-++-..++.|.+.|+.|+. .|+.+|+.+
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~ 110 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVAS 110 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcC
Confidence 35899999999999999999999999999999 999999865
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.04 E-value=7.3 Score=34.14 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCCCeEEEeCCeEEeeehHHHHhcCH-HHHHHhccccc---CCCCCcEEe-cCCCHHHHHHHhhhhccCCCCCcccccC
Q 019671 185 EIGCDIVFEVGDETFKAHKLILAARSP-VFRAQFYGLVG---DRNLDKVVV-KDVEPSIFKAMLLFIYTDKFPDVYEITG 259 (337)
Q Consensus 185 ~~~~Dv~~~v~~~~~~ahk~iLa~~S~-~F~~~~~~~~~---e~~~~~i~l-~~~~~~~f~~~L~~iY~~~~~~~~~~~~ 259 (337)
+...-++..+.+..|-+.+.+|.+.-. -.-.||.+++. .....+.++ ++++..+|+++|+|--+|.+..+.
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~---- 168 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS---- 168 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC----
Confidence 455668888899999999988876543 23445544332 223345666 479999999999999998766544
Q ss_pred CCCccchHHHHHHHHHHhhccCh
Q 019671 260 TTSMCTTTNMVQHLLAAADLYNV 282 (337)
Q Consensus 260 ~~~~~~~~~~~~~ll~~A~~~~~ 282 (337)
.-.+.+|-+++|++.+
T Consensus 169 -------~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 169 -------SVSVSELREACDYLLV 184 (438)
T ss_pred -------CCchHHHHhhcceEEe
Confidence 1357777777777654
No 56
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=69.86 E-value=3.2 Score=30.38 Aligned_cols=29 Identities=41% Similarity=0.619 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 298 NAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 298 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
+.+++..++.+|+.++++.|++.|.+++.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 48889999999999999999999999986
No 57
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=63.98 E-value=16 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhccC------------ChhhHHHHHHHHHhC---CChHHHHHHHHhcc
Q 019671 271 QHLLAAADLYNVDRLKLLCESKLCEEL------------NAETVATTLALAEQH---QCPQLKAICLKFAA 326 (337)
Q Consensus 271 ~~ll~~A~~~~~~~l~~~ce~~l~~~i------------~~~n~~~~l~~A~~~---~~~~L~~~~~~~i~ 326 (337)
.+++.+|+.|+.+.|...|.+++..++ +.+.+..++. .+.. +-.++.+.+++++.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~-~~~l~v~~E~~v~~av~~W~~ 71 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS-SDDLNVSSEDDVFEAVLRWLK 71 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH-TSS--ECTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh-ccccccccHHHHHHHHHHHHH
Confidence 468899999999999999999998752 2233333333 2222 33567888888876
No 58
>PHA03098 kelch-like protein; Provisional
Probab=51.43 E-value=12 Score=36.27 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 297 LNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
++.+|+.++|..|+.+.++.|+..|.+|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 688899999999999999999999999998
No 59
>PHA02713 hypothetical protein; Provisional
Probab=48.40 E-value=23 Score=34.68 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 297 LNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
++.+|+.++|..|+.+.++.|++.|.+||.
T Consensus 91 i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 91 ISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998
No 60
>PHA02790 Kelch-like protein; Provisional
Probab=40.95 E-value=16 Score=34.90 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 297 LNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
|+.+|+..+|..|..++.+.+++.|.+|+.
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~ 117 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFIL 117 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 688999999999999999999999999998
No 61
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=40.26 E-value=1.1e+02 Score=20.50 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=40.6
Q ss_pred HHHhhhhccCCCCCcccccCCCCccchHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhCCChHHH
Q 019671 240 KAMLLFIYTDKFPDVYEITGTTSMCTTTNMVQHLLAAADLYNVDRLKLLCESKLCEELNAETVATTLALAEQHQCPQLK 318 (337)
Q Consensus 240 ~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~i~~~n~~~~l~~A~~~~~~~L~ 318 (337)
+++|+.+|.-.-..+. +.+.+|++-..-+.-..|....+ ..-+.+-..-++.+|++++....+
T Consensus 5 rA~LE~l~~~p~~~s~------------e~a~~l~egL~nLrp~~lq~LL~----~C~svKvkRLfl~lA~~~~h~W~~ 67 (69)
T PF11459_consen 5 RAILELLSEVPKRQSF------------EEADELMEGLRNLRPRVLQELLE----HCTSVKVKRLFLYLAERAGHPWFK 67 (69)
T ss_pred HHHHHHHHhCCccCCH------------HHHHHHHHHHhhcCHHHHHHHHH----HCccHHHHHHHHHHHHHcCCchHh
Confidence 5788888866555443 67778877776665544433332 333555556678999999887654
No 62
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=39.83 E-value=22 Score=33.41 Aligned_cols=30 Identities=43% Similarity=0.585 Sum_probs=28.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 297 LNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 297 i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
+..+|++.+|..|.+|....|++.|++||.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr 214 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR 214 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578999999999999999999999999997
No 63
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=37.63 E-value=34 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.155 Sum_probs=13.2
Q ss_pred HHHHHhCCChHHHHHHHHhccCcCChhhhh
Q 019671 306 LALAEQHQCPQLKAICLKFAATPANLGGAC 335 (337)
Q Consensus 306 l~~A~~~~~~~L~~~~~~~i~~~~~~~~i~ 335 (337)
+.+|+.|++..|.+.|.+||. .|+..+.
T Consensus 5 ~~~a~~~~~~~L~~~~~~~i~--~nf~~~~ 32 (101)
T smart00875 5 RRFAELYGLEELLEKALRFIL--KNFLEVA 32 (101)
T ss_pred HHHHHHhChHHHHHHHHHHHH--HHHHHHh
Confidence 344444445555555555544 4444443
No 64
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.10 E-value=47 Score=30.66 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 019671 267 TNMVQHLLAAADLYNVDRLKLLCESKLCEE 296 (337)
Q Consensus 267 ~~~~~~ll~~A~~~~~~~l~~~ce~~l~~~ 296 (337)
+.++...+++|.+|+++.++..|.+.|..+
T Consensus 172 pkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 172 PKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 479999999999999999999999998764
No 65
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=25.89 E-value=55 Score=32.16 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 296 ELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 296 ~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
.|+.+|+.++|..|..+++..+.+.|.+|+.
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~ 131 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLE 131 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3688999999999999999999999999998
No 66
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=24.50 E-value=1.6e+02 Score=20.12 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=27.2
Q ss_pred HHHhccCChhhHHHHHHHHHhCCChHHHHHHHHhcc
Q 019671 291 SKLCEELNAETVATTLALAEQHQCPQLKAICLKFAA 326 (337)
Q Consensus 291 ~~l~~~i~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 326 (337)
+|+ .++...+..++..|...+...|.+.|.++|+
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA 40 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIA 40 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 445 4588889999999999999999999999886
No 67
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=1.7e+02 Score=26.41 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=38.2
Q ss_pred cCCCc-CCCeEE-EEEecceeccccCCC-CCccccCCCCchhhhHHHhhhcCCCCCeEEEeCCeEEeeehHHHHhcCHHH
Q 019671 137 TSDYI-KDDCLL-INCTVGVVRNRLEGP-KQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVF 213 (337)
Q Consensus 137 ~~~~l-~~d~l~-i~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~ahk~iLa~~S~~F 213 (337)
+.||+ .||.++ ++|.|.+...++..+ +..+++ +.-+.+|.++..||.-|.+-+.||
T Consensus 342 d~GYv~e~dqvICv~C~VrmfipSIGk~GGCNPvP---------------------leye~ddnki~Idkasleag~nyF 400 (405)
T COG4393 342 DQGYVMEGDQVICVRCDVRMFIPSIGKKGGCNPVP---------------------LEYEIDDNKIIIDKASLEAGKNYF 400 (405)
T ss_pred ccceEeECCEEEEEEccEEEEcccCCCCCCCCCCc---------------------eeEEecCcEEEEEHHHhhhccccc
Confidence 35666 455544 799999987554432 211211 234557888999999999999998
Q ss_pred HH
Q 019671 214 RA 215 (337)
Q Consensus 214 ~~ 215 (337)
..
T Consensus 401 st 402 (405)
T COG4393 401 ST 402 (405)
T ss_pred cc
Confidence 54
Done!